Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA1	19	genome.wustl.edu	37	9	107568529	107568529	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	9	107568529	107568529	G	A	SNP	ABCA1	NM_005502.2	human	genbank	58_37c	-1	reviewed	missense	c.4457	p.P1486L	1.000	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
AMOTL1	154810	genome.wustl.edu	37	11	94554978	94554978	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	11	94554978	94554978	G	T	SNP	AMOTL1	NM_130847.2	human	genbank	58_37c	+1	reviewed	missense	c.1404	p.K468N	1.000	NULL	NULL	-	no_errors
ANK2	287	genome.wustl.edu	37	4	114158316	114158316	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	4	114158316	114158316	C	T	SNP	ANK2	NM_001148.4	human	genbank	58_37c	+1	reviewed	silent	c.657	p.D219	0.994	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
AR	367	genome.wustl.edu	37	X	66765161	66765161	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	X	66765161	66765161	A	T	SNP	AR	NM_000044.2	human	genbank	58_37c	+1	reviewed	missense	c.173	p.Q58L	0.920	HMMPfam_Androgen_recep	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_Androgen_recep,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
ATP7A	538	genome.wustl.edu	37	X	77268400	77268400	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	X	77268400	77268400	A	G	SNP	ATP7A	NM_000052.4	human	genbank	58_37c	+1	reviewed	missense	c.2197	p.I733V	1.000	NULL	HMMPfam_Hydrolase,HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,HMMPfam_E1-E2_ATPase,PatternScan_HMA_1,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
ATPGD1	57571	genome.wustl.edu	37	11	67187071	67187073	+	In_Frame_Del	DEL	GGA	GGA	-	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	GGA	GGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	11	67187071	67187073	GGA	-	DEL	CARNS1	NM_020811.1	human	genbank	58_37c	+1	validated	in_frame_del	c.597_599	p.E203in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_ATP-grasp_3,PatternScan_CPSASE_2,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
BMP2K	55589	genome.wustl.edu	37	4	79780777	79780777	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	4	79780777	79780777	T	C	SNP	BMP2K	NM_198892.1	human	genbank	58_37c	+1	reviewed	missense	c.923	p.I308T	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors
C17orf53	78995	genome.wustl.edu	37	17	42225492	42225492	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	17	42225492	42225492	C	T	SNP	C17orf53	NM_024032.3	human	genbank	58_37c	+1	validated	silent	c.321	p.S107	0.005	NULL	NULL	-	no_errors
C4orf36	132989	genome.wustl.edu	37	4	87809322	87809322	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	4	87809322	87809322	G	C	SNP	C4orf36	NM_144645.3	human	genbank	58_37c	-1	validated	missense	c.172	p.L58V	0.023	NULL	NULL	-	no_errors
C7orf57	136288	genome.wustl.edu	37	7	48086112	48086112	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	7	48086112	48086112	C	G	SNP	C7orf57	NM_001100159.1	human	genbank	58_37c	+1	validated	missense	c.406	p.Q136E	0.024	NULL	NULL	-	no_errors
COL16A1	1307	genome.wustl.edu	37	1	32124115	32124115	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	1	32124115	32124115	C	T	SNP	COL16A1	NM_001856.3	human	genbank	58_37c	-1	reviewed	missense	c.3994	p.G1332S	1.000	HMMPfam_Collagen	HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
ENSG00000231972	0	genome.wustl.edu	37	15	92294289	92294289	+	Missense_Mutation	SNP	G	G	T	rs112265641	byCluster;byFrequency	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	15	92294289	92294289	G	T	SNP	ENSG00000231972	ENST00000419607	human	ensembl	58_37c	+1	known	missense	c.1338	p.R446S	0.000	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000246271	0	genome.wustl.edu	37	11	47250319	47250319	+	RNA	SNP	C	T	T	rs11039139	byFrequency;by1000genomes	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	11	47250319	47250319	C	T	SNP	DDB2	NM_000107.2	human	genbank	58_37c	+1	reviewed	intronic	c.457-4046	e4-4046	0.038	-	-	-	no_errors
GIPC3	126326	genome.wustl.edu	37	19	3586586	3586586	+	Nonsense_Mutation	SNP	C	C	T	rs138707041	byFrequency	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	19	3586586	3586586	C	T	SNP	GIPC3	NM_133261.2	human	genbank	58_37c	+1	validated	nonsense	c.319	p.R107*	0.990	superfamily_PDZ	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	-	no_errors
GLB1L3	112937	genome.wustl.edu	37	11	134147635	134147635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	11	134147635	134147635	G	A	SNP	GLB1L3	NM_001080407.2	human	genbank	58_37c	+1	validated	missense	c.191	p.R64Q	0.011	superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases	-	no_errors
GNB1	2782	genome.wustl.edu	37	1	1720602	1720602	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	1	1720602	1720602	A	G	SNP	GNB1	NM_002074.2	human	genbank	58_37c	-1	reviewed	missense	c.806	p.I269T	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
GRID1	2894	genome.wustl.edu	37	10	87362239	87362239	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	10	87362239	87362239	G	A	SNP	GRID1	NM_017551.2	human	genbank	58_37c	-1	reviewed	missense	c.2821	p.R941W	1.000	NULL	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
LAMA2	3908	genome.wustl.edu	37	6	129813116	129813129	+	Frame_Shift_Del	DEL	GTTAAAAAGCTTTT	GTTAAAAAGCTTTT	-	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	GTTAAAAAGCTTTT	GTTAAAAAGCTTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	6	129813116	129813129	GTTAAAAAGCTTTT	-	DEL	LAMA2	NM_000426.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.7969_7982	p.V2657fs	0.915:0.915:0.529:0.979:0.999:1.000:1.000:1.000:1.000:1.000:1.000:0.959:0.995:0.992	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1	HMMPfam_Laminin_B,HMMSmart_LamG,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF56399,superfamily_SSF57196	-	no_errors
LPAR1	1902	genome.wustl.edu	37	9	113637890	113637890	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	9	113637890	113637890	G	A	SNP	LPAR1	NM_001401.3	human	genbank	58_37c	-1	reviewed	silent	c.906	p.F302	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
MDN1	23195	genome.wustl.edu	37	6	90402199	90402199	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	6	90402199	90402199	T	-	DEL	MDN1	NM_014611.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.10550	p.D3517fs	1.000	NULL	HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like	-	no_errors
MLL3	58508	genome.wustl.edu	37	7	151962208	151962208	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	7	151962208	151962208	G	A	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	missense	c.1099	p.H367Y	1.000	HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MRPL45	84311	genome.wustl.edu	37	17	36476574	36476579	+	In_Frame_Del	DEL	GTTCAA	GTTCAA	-	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	GTTCAA	GTTCAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	17	36476574	36476579	GTTCAA	-	DEL	MRPL45	NM_032351.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.583_588	p.QV196in_frame_del	1.000:1.000:1.000:1.000:1.000:0.980	HMMPfam_Tim44	HMMPfam_Tim44	-	no_errors
NUP205	23165	genome.wustl.edu	37	7	135311088	135311088	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	7	135311088	135311088	G	A	SNP	NUP205	NM_015135.2	human	genbank	58_37c	+1	validated	missense	c.4772	p.R1591H	1.000	NULL	NULL	-	no_errors
OPTN	10133	genome.wustl.edu	37	10	13166055	13166055	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	10	13166055	13166055	G	A	SNP	OPTN	NM_001008211.1	human	genbank	58_37c	+1	reviewed	missense	c.943	p.E315K	0.994	NULL	NULL	-	no_errors
OR6B1	135946	genome.wustl.edu	37	7	143701973	143701982	+	Frame_Shift_Del	DEL	TCAAGGAAGC	TCAAGGAAGC	-	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	TCAAGGAAGC	TCAAGGAAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	7	143701973	143701982	TCAAGGAAGC	-	DEL	OR6B1	NM_001005281.1	human	genbank	58_37c	+1	provisional	frame_shift_del	c.884_893	p.K296fs	0.969:0.871:0.903:0.911:0.907:0.922:0.917:0.913:0.993:0.998	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	rs121913284	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	3	178921553	178921553	T	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1035	p.N345K	1.000	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PXDNL	137902	genome.wustl.edu	37	8	52361599	52361599	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	8	52361599	52361599	G	A	SNP	PXDNL	NM_144651.4	human	genbank	58_37c	-1	validated	silent	c.1329	p.D443	0.002	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_LRR_1,HMMPfam_An_peroxidase,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Heme-dependent peroxidases,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
SGCB	6443	genome.wustl.edu	37	4	52899712	52899712	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	4	52899712	52899712	C	A	SNP	SGCB	NM_000232.4	human	genbank	58_37c	-1	reviewed	missense	c.128	p.G43V	1.000	NULL	HMMPfam_Sarcoglycan_1	-	no_errors
SLC39A13	91252	genome.wustl.edu	37	11	47436878	47436878	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	11	47436878	47436878	C	T	SNP	SLC39A13	NM_001128225.2	human	genbank	58_37c	+1	reviewed	silent	c.1080	p.I360	0.477	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
SVEP1	79987	genome.wustl.edu	37	9	113169227	113169227	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	9	113169227	113169227	C	T	SNP	SVEP1	NM_153366.3	human	genbank	58_37c	-1	validated	missense	c.8653	p.D2885N	0.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Pentaxin,HMMSmart_SM00159,HMMSmart_SM00179,HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_HYR,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,superfamily_Complement control module/SCR domain,PatternScan_EGF_CA,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
TIMM22	29928	genome.wustl.edu	37	17	900500	900500	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	17	900500	900500	C	T	SNP	TIMM22	NM_013337.2	human	genbank	58_37c	+1	provisional	missense	c.118	p.R40W	0.898	NULL	HMMPfam_Tim17	-	no_errors
TSKS	60385	genome.wustl.edu	37	19	50251415	50251415	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HN-01A-11D-A099-09	TCGA-BH-A0HN-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ada199c5-8015-481f-a46e-46fa42646cd8	c86ec88b-34c5-4b99-a6a7-aa0c4b033684	19	50251415	50251415	G	A	SNP	TSKS	NM_021733.1	human	genbank	58_37c	-1	reviewed	missense	c.506	p.S169F	0.829	NULL	NULL	-	no_errors
