Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTA1	58	genome.wustl.edu	37	1	229567787	229567787	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	1	229567787	229567787	G	T	SNP	ACTA1	NM_001100.3	human	genbank	58_37c	-1	reviewed	missense	c.762	p.N254K	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_1,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
AMAC1L2	83650	genome.wustl.edu	37	8	11188822	11188822	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	8	11188822	11188822	G	A	SNP	AMAC1L2	NM_054028.1	human	genbank	58_37c	+1	reviewed	silent	c.207	p.S69	1.000	HMMPfam_DUF6	HMMPfam_DUF6,superfamily_SSF103481	-	no_errors
C12orf51	283450	genome.wustl.edu	37	12	112687979	112687979	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	12	112687979	112687979	G	A	SNP	C12orf51	NM_001109662.2	human	genbank	58_37c	-1	validated	missense	c.2653	p.R885C	1.000	NULL	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	-	no_errors
DUSP6	1848	genome.wustl.edu	37	12	89744753	89744753	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	12	89744753	89744753	A	G	SNP	DUSP6	NM_001946.2	human	genbank	58_37c	-1	reviewed	silent	c.450	p.N150	1.000	superfamily_Rhodanese/Cell cycle control phosphatase	HMMPfam_DSPc,HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
ELMOD1	55531	genome.wustl.edu	37	11	107518302	107518302	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	11	107518302	107518302	G	C	SNP	ELMOD1	NM_018712.3	human	genbank	58_37c	+1	validated	missense	c.529	p.G177R	1.000	HMMPfam_ELMO_CED12	HMMPfam_ELMO_CED12	-	no_errors
ENSG00000168738	0	genome.wustl.edu	37	18	10855367	10855367	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	18	10855367	10855367	T	C	SNP	ENSG00000168738	ENST00000302079	human	ensembl	58_37c	-1	known	missense	c.517	p.N173D	0.206	NULL	NULL	-	no_errors
ENSG00000246198	0	genome.wustl.edu	37	12	110811920	110811920	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	12	110811920	110811920	G	A	SNP	ANAPC7	ENST00000481473	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-110811920	NULL	0.918	-	-	-	no_coding_region
ENSG00000248034	0	genome.wustl.edu	37	2	88857216	88857216	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	2	88857216	88857216	T	C	SNP	EIF2AK3	NM_004836.5	human	genbank	58_37c	-1	reviewed	3_prime_untranslated_region	c.*38	NULL	0.000	-	-	-	no_errors
FAM160A1	729830	genome.wustl.edu	37	4	152571037	152571037	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	4	152571037	152571037	A	C	SNP	FAM160A1	NM_001109977.1	human	genbank	58_37c	+1	predicted	missense	c.1844	p.K615T	0.099	NULL	HMMPfam_RAI16-like	-	no_errors
FER1L6	654463	genome.wustl.edu	37	8	125047696	125047696	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	8	125047696	125047696	G	A	SNP	FER1L6	NM_001039112.2	human	genbank	58_37c	+1	validated	splice_site	c.2464+1	e18+1	1.000	-	-	-	no_errors
FER1L6	654463	genome.wustl.edu	37	8	125076805	125076805	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	8	125076805	125076805	A	G	SNP	FER1L6	NM_001039112.2	human	genbank	58_37c	+1	validated	silent	c.3546	p.G1182	0.000	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
GPR63	81491	genome.wustl.edu	37	6	97247418	97247418	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	6	97247418	97247418	T	C	SNP	GPR63	NM_001143957.1	human	genbank	58_37c	-1	validated	missense	c.190	p.T64A	1.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
HIF3A	64344	genome.wustl.edu	37	19	46815779	46815779	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	19	46815779	46815779	G	A	SNP	HIF3A	NM_152795.2	human	genbank	58_37c	+1	reviewed	silent	c.894	p.Q298	1.000	HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)	HMMSmart_SM00091,HMMSmart_SM00353,HMMSmart_SM00086,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
INHBE	83729	genome.wustl.edu	37	12	57849486	57849486	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	12	57849486	57849486	A	C	SNP	INHBE	NM_031479.3	human	genbank	58_37c	+1	validated	missense	c.167	p.H56P	0.997	NULL	HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1,superfamily_SSF57501	-	no_errors
ITLN1	55600	genome.wustl.edu	37	1	160850420	160850420	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	1	160850420	160850420	C	T	SNP	ITLN1	NM_017625.2	human	genbank	58_37c	-1	validated	missense	c.643	p.D215N	0.962	superfamily_Fibrinogen C-terminal domain-like	superfamily_Fibrinogen C-terminal domain-like	-	no_errors
KDM2A	22992	genome.wustl.edu	37	11	67010479	67010479	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	11	67010479	67010479	G	T	SNP	KDM2A	NM_012308.2	human	genbank	58_37c	+1	reviewed	splice_site	c.1480-1	e12-1	0.999	-	-	-	no_errors
LRIG1	26018	genome.wustl.edu	37	3	66431242	66431242	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	3	66431242	66431242	C	T	SNP	LRIG1	NM_015541.2	human	genbank	58_37c	-1	validated	silent	c.2814	p.V938	0.001	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00365,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
MTPAP	55149	genome.wustl.edu	37	10	30602780	30602780	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	10	30602780	30602780	G	A	SNP	MTPAP	NM_018109.3	human	genbank	58_37c	-1	validated	nonsense	c.1507	p.R503*	0.999	superfamily_PAP/OAS1 substrate-binding domain	HMMPfam_PAP_assoc,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain	-	no_errors
MYH2	4620	genome.wustl.edu	37	17	10436640	10436640	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	17	10436640	10436640	G	T	SNP	MYH2	NM_001100112.1	human	genbank	58_37c	-1	reviewed	missense	c.2403	p.F801L	1.000	HMMPfam_IQ,HMMSmart_IQ,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NEDD9	4739	genome.wustl.edu	37	6	11191135	11191135	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	6	11191135	11191135	C	T	SNP	NEDD9	NM_001142393.1	human	genbank	58_37c	-1	validated	missense	c.967	p.V323I	0.603	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Serine_rich	-	no_errors
PCDHB6	56130	genome.wustl.edu	37	5	140532071	140532071	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	5	140532071	140532071	C	A	SNP	PCDHB6	NM_018939.2	human	genbank	58_37c	+1	reviewed	missense	c.2233	p.Q745K	0.965	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PRKDC	5591	genome.wustl.edu	37	8	48743255	48743255	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	8	48743255	48743255	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	58_37c	-1	known	missense	c.8305	p.V2769I	0.995	superfamily_ARM repeat	HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),HMMPfam_NUC194,superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
SDK1	221935	genome.wustl.edu	37	7	4308309	4308309	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	7	4308309	4308309	G	A	SNP	SDK1	ENST00000420750	human	ensembl	58_37c	+1	known	splice_site	c.1968-1	e17-1	0.004	-	-	-	no_errors
SOX14	8403	genome.wustl.edu	37	3	137483952	137483952	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	3	137483952	137483952	G	A	SNP	SOX14	NM_004189.2	human	genbank	58_37c	+1	reviewed	missense	c.326	p.G109D	1.000	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box	-	no_errors
TTLL8	164714	genome.wustl.edu	37	22	50471725	50471733	+	In_Frame_Del	DEL	GGAACCACT	GGAACCACT	-	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	GGAACCACT	GGAACCACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	22	50471725	50471733	GGAACCACT	-	DEL	TTLL8	NM_001080447.1	human	genbank	58_37c	-1	provisional	in_frame_del	c.1189_1181	p.QWF394in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
UCP3	7352	genome.wustl.edu	37	11	73717218	73717218	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1ET-01A-11D-A135-09	TCGA-BH-A1ET-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bd66613-68ad-42c1-ab43-dac1386027f9	55ca01bf-18c0-48b3-b83f-4e13b5161bde	11	73717218	73717218	C	T	SNP	UCP3	NM_003356.3	human	genbank	58_37c	-1	reviewed	silent	c.333	p.A111	0.000	superfamily_Mitochondrial carrier	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
