Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AGAP3	0	genome.wustl.edu	37	7	150840935	150840935	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	7	150840935	150840935	G	A	SNP	AGAP3	NM_031946.4	human	genbank	58_37c	+1	validated	missense	c.2641	p.G881R	0.997	NULL	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Miro,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ALMS1	0	genome.wustl.edu	37	2	73717343	73717343	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	2	73717343	73717343	C	G	SNP	ALMS1	NM_015120.4	human	genbank	58_37c	+1	reviewed	missense	c.8254	p.H2752D	0.998	NULL	NULL	-	no_errors
ALMS1	0	genome.wustl.edu	37	2	73717959	73717959	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	2	73717959	73717959	C	T	SNP	ALMS1	NM_015120.4	human	genbank	58_37c	+1	reviewed	missense	c.8870	p.S2957L	0.398	NULL	NULL	-	no_errors
ALMS1	0	genome.wustl.edu	37	2	73718057	73718057	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	2	73718057	73718057	C	T	SNP	ALMS1	NM_015120.4	human	genbank	58_37c	+1	reviewed	nonsense	c.8968	p.Q2990*	0.944	NULL	NULL	-	no_errors
ARMCX3	0	genome.wustl.edu	37	X	100880821	100880821	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	X	100880821	100880821	A	G	SNP	ARMCX3	NM_016607.3	human	genbank	58_37c	+1	reviewed	silent	c.852	p.Q284	0.991	HMMPfam_DUF634,superfamily_ARM-type_fold	HMMPfam_DUF634,superfamily_ARM-type_fold	-	no_errors
ASMT	0	genome.wustl.edu	37	X	1755428	1755428	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	X	1755428	1755428	G	C	SNP	ASMT	NM_004043.2	human	genbank	58_37c	+1	reviewed	missense	c.885	p.E295D	0.000	HMMPfam_Methyltransf_2,superfamily_SSF53335	HMMPfam_Methyltransf_2,superfamily_SSF46785,superfamily_SSF53335	-	no_errors
C10orf140	0	genome.wustl.edu	37	10	21805466	21805467	+	In_Frame_Ins	INS	-	-	CCTCCT	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	10	21805466	21805467	-	CCTCCT	INS	C10orf140	NM_207371.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.1286_1285	p.429in_frame_insEE	0.998:1.000	NULL	PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain	-	no_errors
C20orf114	0	genome.wustl.edu	37	20	31890728	31890728	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	20	31890728	31890728	G	A	SNP	C20orf114	NM_033197.2	human	genbank	58_37c	+1	reviewed	missense	c.988	p.D330N	0.000	superfamily_Bactericidal permeability-increasing protein BPI	HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI	-	no_errors
CCDC48	0	genome.wustl.edu	37	3	128758648	128758648	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	3	128758648	128758648	C	G	SNP	CCDC48	NM_024768.2	human	genbank	58_37c	+1	validated	missense	c.443	p.S148C	0.003	NULL	NULL	-	no_errors
CFH	0	genome.wustl.edu	37	1	196654268	196654268	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	196654268	196654268	G	A	SNP	CFH	NM_000186.3	human	genbank	58_37c	+1	reviewed	missense	c.865	p.E289K	0.791	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors
CHRDL1	0	genome.wustl.edu	37	X	110035325	110035325	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	X	110035325	110035325	G	C	SNP	CHRDL1	NM_001143981.1	human	genbank	58_37c	-1	reviewed	missense	c.85	p.Q29E	1.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,superfamily_Fibronectin type I module	-	no_errors
CLEC12A	0	genome.wustl.edu	37	12	10137481	10137481	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	12	10137481	10137481	C	T	SNP	CLEC12A	NM_138337.5	human	genbank	58_37c	+1	reviewed	silent	c.654	p.N218	0.001	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	-	no_errors
CR2	0	genome.wustl.edu	37	1	207648485	207648485	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	207648485	207648485	C	G	SNP	CR2	NM_001006658.2	human	genbank	58_37c	+1	reviewed	missense	c.2640	p.I880M	1.000	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	-	no_errors
CSMD2	0	genome.wustl.edu	37	1	34002643	34002643	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	34002643	34002643	C	G	SNP	CSMD2	NM_052896.3	human	genbank	58_37c	-1	validated	missense	c.9426	p.Q3142H	1.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain	-	no_errors
CYP2B6	0	genome.wustl.edu	37	19	41510050	41510050	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	19	41510050	41510050	C	G	SNP	CYP2B6	NM_000767.4	human	genbank	58_37c	+1	reviewed	missense	c.316	p.P106A	0.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DCP1B	0	genome.wustl.edu	37	12	2062323	2062324	+	In_Frame_Ins	INS	-	-	TGC	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	12	2062323	2062324	-	TGC	INS	DCP1B	NM_152640.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.783_782	p.262in_frame_insQ	0.742:0.836	NULL	HMMPfam_DCP1,superfamily_PH domain-like	-	no_errors
DNTT	0	genome.wustl.edu	37	10	98087355	98087355	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	10	98087355	98087355	G	C	SNP	DNTT	NM_004088.3	human	genbank	58_37c	+1	reviewed	silent	c.1005	p.R335	0.990	HMMSmart_SM00483,HMMPfam_NTP_transf_2,PatternScan_DNA_POLYMERASE_X,superfamily_Nucleotidyltransferase	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMSmart_SM00483,HMMPfam_NTP_transf_2,superfamily_DNA polymerase beta N-terminal domain-like,HMMPfam_DNA_pol_lambd_f,superfamily_DNA polymerase beta-like second domain,PatternScan_DNA_POLYMERASE_X,superfamily_Nucleotidyltransferase	-	no_errors
ENPEP	0	genome.wustl.edu	37	4	111474542	111474542	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	4	111474542	111474542	C	T	SNP	ENPEP	NM_001977.3	human	genbank	58_37c	+1	validated	missense	c.2573	p.S858L	1.000	NULL	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain,superfamily_Leukotriene A4 hydrolase N-terminal domain"	-	no_errors
ENSG00000198695	0	genome.wustl.edu	37	MT	14522	14522	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	MT	14522	14522	A	G	SNP	ENSG00000198695	ENST00000361681	human	ensembl	58_37c	-1	known	missense	c.152	p.M51T	NULL	HMMPfam_Oxidored_q3	HMMPfam_Oxidored_q3	-	mismatch_between_exon_seq_and_reference
ENSG00000198938	0	genome.wustl.edu	37	MT	9532	9532	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	MT	9532	9532	C	T	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	missense	c.326	p.T109I	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000237450	0	genome.wustl.edu	37	14	34955345	34955346	+	Splice_Site	INS	-	-	TG	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	14	34955345	34955346	-	TG	INS	ENSG00000237450	ENST00000393172	human	ensembl	58_37c	+1	known	splice_site_ins	c.NULL	NULL	0.605:0.864	-	-	-	no_coding_region:pseudogene
FAM21A	0	genome.wustl.edu	37	10	51853633	51853633	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	10	51853633	51853633	C	T	SNP	FAM21A	NM_001005751.1	human	genbank	58_37c	+1	validated	missense	c.1136	p.T379M	0.370	NULL	NULL	-	no_errors
FLNB	0	genome.wustl.edu	37	3	58154337	58154337	+	Missense_Mutation	SNP	G	G	A	rs142229998	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	3	58154337	58154337	G	A	SNP	FLNB	NM_001457.3	human	genbank	58_37c	+1	reviewed	missense	c.7369	p.G2457S	1.000	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin	HMMSmart_IG_FLMN,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,superfamily_Ig_E-set,superfamily_Calponin-homology,HMMPfam_Filamin	-	no_errors
FOLH1B	0	genome.wustl.edu	37	11	89420578	89420578	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	11	89420578	89420578	C	T	SNP	FOLH1B	NM_153696.2	human	genbank	58_37c	+1	provisional	missense	c.580	p.P194S	1.000	superfamily_SSF53187	HMMPfam_TFR_dimer,superfamily_Transferrin_rcpt-like_dimerise,HMMPfam_Peptidase_M28,superfamily_SSF53187	-	no_errors
GH2	0	genome.wustl.edu	37	17	61957656	61957656	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	17	61957656	61957656	G	A	SNP	GH2	NM_022558.2	human	genbank	58_37c	-1	reviewed	silent	c.675	p.T225	0.019	NULL	HMMPfam_Hormone_1,superfamily_4_helix_cytokine,PatternScan_SOMATOTROPIN_1	-	no_errors
HDAC1	0	genome.wustl.edu	37	1	32793146	32793146	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	32793146	32793146	G	A	SNP	HDAC1	NM_004964.2	human	genbank	58_37c	+1	reviewed	silent	c.504	p.Q168	1.000	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase	-	no_errors
HDX	0	genome.wustl.edu	37	X	83724462	83724462	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	X	83724462	83724462	C	G	SNP	HDX	NM_144657.4	human	genbank	58_37c	-1	validated	missense	c.269	p.R90P	0.040	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	no_errors
HUS1	0	genome.wustl.edu	37	7	48018139	48018139	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	7	48018139	48018139	C	T	SNP	HUS1	NM_004507.2	human	genbank	58_37c	-1	reviewed	missense	c.232	p.E78K	1.000	HMMPfam_Hus1	HMMPfam_Hus1	-	no_errors
IRF8	0	genome.wustl.edu	37	16	85936652	85936652	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	16	85936652	85936652	C	T	SNP	IRF8	NM_002163.2	human	genbank	58_37c	+1	reviewed	nonsense	c.31	p.R11*	0.995	HMMPfam_IRF,HMMSmart_IRF,superfamily_SSF46785	HMMPfam_IRF,HMMSmart_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3,PatternScan_IRF,superfamily_SSF46785	-	no_errors
KIRREL3	0	genome.wustl.edu	37	11	126391325	126391325	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	11	126391325	126391325	C	T	SNP	KIRREL3	NM_032531.3	human	genbank	58_37c	-1	reviewed	silent	c.318	p.L106	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
LOC100129800	0	genome.wustl.edu	37	19	35034303	35034303	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	19	35034303	35034303	C	G	SNP	LOC100129800	XM_002343672.1	human	genbank	58_37c	-1	model	missense	c.536	p.G179A	1.000	HMMSmart_SM00614,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00614,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	pseudogene
LOC100288577	0	genome.wustl.edu	37	12	132423786	132423786	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	12	132423786	132423786	C	T	SNP	LOC100288577	XM_002343226.1	human	genbank	58_37c	-1	model	missense	c.553	p.D185N	1.000	NULL	NULL	-	no_errors
LOC100289317	0	genome.wustl.edu	37	22	45723962	45723962	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	22	45723962	45723962	G	T	SNP	LOC100289317	XM_002343782.1	human	genbank	58_37c	-1	model	missense	c.280	p.R94S	0.000	NULL	NULL	-	no_errors
LOC283685	0	genome.wustl.edu	37	15	23686010	23686011	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	15	23686010	23686011	-	CTC	INS	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	in_frame_ins	c.1438_1437	p.479in_frame_insE	0.002:0.005	NULL	NULL	-	no_errors
LPIN1	0	genome.wustl.edu	37	2	11911646	11911646	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	2	11911646	11911646	C	T	SNP	LPIN1	NM_145693.1	human	genbank	58_37c	+1	reviewed	missense	c.437	p.P146L	0.000	NULL	HMMPfam_Lipin_N,HMMPfam_LNS2,HMMSmart_LNS2,superfamily_SSF56784	-	no_errors
LRP1B	0	genome.wustl.edu	37	2	141819658	141819658	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	2	141819658	141819658	G	A	SNP	LRP1B	NM_018557.2	human	genbank	58_37c	-1	validated	nonsense	c.1198	p.Q400*	0.985	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMPfam_NHL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
MAGEE1	0	genome.wustl.edu	37	X	75651058	75651058	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	X	75651058	75651058	T	C	SNP	MAGEE1	NM_020932.2	human	genbank	58_37c	+1	reviewed	missense	c.2735	p.M912T	0.998	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MGAM	0	genome.wustl.edu	37	7	141754683	141754683	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	7	141754683	141754683	C	T	SNP	MGAM	NM_004668.2	human	genbank	58_37c	+1	reviewed	missense	c.3289	p.R1097C	0.098	NULL	HMMPfam_Glyco_hydro_31,HMMPfam_Trefoil	-	no_errors
MRPL35	0	genome.wustl.edu	37	2	86434315	86434315	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	2	86434315	86434315	C	T	SNP	MRPL35	NM_016622.3	human	genbank	58_37c	+1	reviewed	silent	c.243	p.P81	0.988	NULL	HMMPfam_MRP-L35	-	no_errors
OR8G2	0	genome.wustl.edu	37	11	124095425	124095425	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	11	124095425	124095425	G	T	SNP	OR8G2	NM_001007249.1	human	genbank	58_37c	+1	provisional	missense	c.28	p.D10Y	0.000	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OSBPL5	0	genome.wustl.edu	37	11	3111890	3111890	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	11	3111890	3111890	C	T	SNP	OSBPL5	NM_020896.3	human	genbank	58_37c	-1	reviewed	missense	c.2296	p.D766N	0.999	NULL	HMMPfam_Oxysterol_BP,HMMPfam_PH,HMMSmart_PH,PatternScan_OSBP,superfamily_SSF50729	-	no_errors
OVCH1	0	genome.wustl.edu	37	12	29649525	29649525	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	12	29649525	29649525	A	G	SNP	OVCH1	NM_183378.2	human	genbank	58_37c	-1	validated	silent	c.147	p.S49	0.018	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
PCSK2	0	genome.wustl.edu	37	20	17446160	17446160	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	20	17446160	17446160	G	C	SNP	PCSK2	NM_002594.2	human	genbank	58_37c	+1	reviewed	missense	c.1392	p.E464D	1.000	superfamily_Galactose-binding domain-like	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Subtilisin-like,HMMPfam_P_proprotein,superfamily_Galactose-binding domain-like,superfamily_Protease propeptides/inhibitors	-	no_errors
PDS5B	0	genome.wustl.edu	37	13	33281097	33281097	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	13	33281097	33281097	C	T	SNP	PDS5B	NM_015032.3	human	genbank	58_37c	+1	reviewed	missense	c.1883	p.S628L	1.000	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat,HMMPfam_AT_hook	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
POTEG	0	genome.wustl.edu	37	14	19571357	19571357	+	Missense_Mutation	SNP	T	T	C	rs2845206	byHapMap	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	14	19571357	19571357	T	C	SNP	POTEG	NM_001005356.2	human	genbank	58_37c	+1	validated	missense	c.1136	p.L379S	0.021	NULL	HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
PROSC	0	genome.wustl.edu	37	8	37633453	37633453	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	8	37633453	37633453	G	A	SNP	PROSC	NM_007198.3	human	genbank	58_37c	+1	validated	silent	c.615	p.R205	0.186	HMMPfam_Ala_racemase_N,superfamily_SSF51419	HMMPfam_Ala_racemase_N,PatternScan_UPF0001,superfamily_SSF51419	-	no_errors
PSMD11	0	genome.wustl.edu	37	17	30781593	30781593	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	17	30781593	30781593	C	G	SNP	PSMD11	NM_002815.2	human	genbank	58_37c	+1	reviewed	missense	c.274	p.L92V	1.000	NULL	"HMMPfam_PCI,HMMSmart_SM00088,HMMSmart_SM00753,superfamily_""Winged helix"" DNA-binding domain,superfamily_TPR-like"	-	no_errors
RERE	0	genome.wustl.edu	37	1	8421432	8421432	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	8421432	8421432	G	T	SNP	RERE	NM_001042681.1	human	genbank	58_37c	-1	reviewed	missense	c.2135	p.S712Y	1.000	HMMPfam_Atrophin-1	HMMPfam_GATA,HMMSmart_SM00401,HMMPfam_ELM2,HMMSmart_SM00717,HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_Atrophin-1,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
RNF40	0	genome.wustl.edu	37	16	30778177	30778177	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	16	30778177	30778177	T	A	SNP	RNF40	NM_014771.2	human	genbank	58_37c	+1	reviewed	missense	c.1409	p.L470Q	1.000	NULL	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RP2	0	genome.wustl.edu	37	X	46696579	46696579	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	X	46696579	46696579	C	G	SNP	RP2	NM_006915.2	human	genbank	58_37c	+1	reviewed	missense	c.44	p.S15W	0.997	NULL	superfamily_NDK,HMMSmart_CARP,HMMPfam_TBCC	-	no_errors
RTN3	0	genome.wustl.edu	37	11	63487595	63487595	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	11	63487595	63487595	G	C	SNP	RTN3	NM_201428.1	human	genbank	58_37c	+1	validated	missense	c.1564	p.E522Q	0.201	NULL	HMMPfam_Reticulon	-	no_errors
RUFY2	0	genome.wustl.edu	37	10	70152941	70152941	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	10	70152941	70152941	T	C	SNP	RUFY2	NM_017987.4	human	genbank	58_37c	-1	validated	missense	c.709	p.I237V	1.000	NULL	HMMPfam_FYVE,HMMSmart_FYVE,HMMPfam_RUN,HMMSmart_RUN,superfamily_FYVE_PHD_ZnF	-	no_errors
SGK3	0	genome.wustl.edu	37	8	67740896	67740896	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	8	67740896	67740896	C	G	SNP	SGK3	NM_001033578.1	human	genbank	58_37c	+1	reviewed	missense	c.425	p.S142C	1.000	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
SHISA4	0	genome.wustl.edu	37	1	201859608	201859608	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	201859608	201859608	C	G	SNP	SHISA4	NM_198149.2	human	genbank	58_37c	+1	validated	nonsense	c.272	p.S91*	0.995	NULL	NULL	-	no_errors
SIGLEC8	0	genome.wustl.edu	37	19	51958011	51958011	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	19	51958011	51958011	C	G	SNP	SIGLEC8	NM_014442.2	human	genbank	58_37c	-1	validated	missense	c.1075	p.V359L	0.003	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
SLC26A10	0	genome.wustl.edu	37	12	58018733	58018733	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	12	58018733	58018733	G	T	SNP	SLC26A10	NM_133489.2	human	genbank	58_37c	+1	validated	nonsense	c.1312	p.E438*	0.006	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa,HMMPfam_Sulfate_transp,PatternScan_HTH_ARAC_FAMILY_1	-	no_errors
SLC39A4	0	genome.wustl.edu	37	8	145638248	145638248	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	8	145638248	145638248	G	A	SNP	SLC39A4	NM_130849.2	human	genbank	58_37c	-1	reviewed	silent	c.1710	p.F570	0.924	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
SMPD1	0	genome.wustl.edu	37	11	6411931	6411942	+	In_Frame_Del	DEL	CTGGTGCTGGCG	CTGGTGCTGGCG	-	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	CTGGTGCTGGCG	CTGGTGCTGGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	11	6411931	6411942	CTGGTGCTGGCG	-	DEL	SMPD1	NM_000543.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.103_114	p.VLAL36in_frame_del	0.000:0.001:0.001:0.014:0.001:0.001:0.021:0.346:0.520:0.511:0.351:0.301	NULL	HMMPfam_Metallophos,HMMSmart_SM00741,superfamily_Saposin,superfamily_Metallo-dependent phosphatases	-	no_errors
SPPL2A	0	genome.wustl.edu	37	15	51024862	51024862	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	15	51024862	51024862	C	T	SNP	SPPL2A	NM_032802.3	human	genbank	58_37c	-1	reviewed	missense	c.952	p.D318N	1.000	HMMSmart_SM00730,HMMPfam_Peptidase_A22B	HMMPfam_PA,HMMSmart_SM00730,HMMPfam_Peptidase_A22B,superfamily_Transferrin receptor ectodomain apical domain	-	no_errors
SULF1	0	genome.wustl.edu	37	8	70550877	70550877	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	8	70550877	70550877	C	T	SNP	SULF1	NM_001128204.1	human	genbank	58_37c	+1	validated	nonsense	c.2425	p.Q809*	1.000	superfamily_Alkaline_phosphatase_core	HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline_phosphatase_core	-	no_errors
SYNE1	0	genome.wustl.edu	37	6	152558036	152558036	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	6	152558036	152558036	C	T	SNP	SYNE1	NM_182961.2	human	genbank	58_37c	-1	reviewed	silent	c.20115	p.L6705	1.000	HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
TNFRSF9	0	genome.wustl.edu	37	1	7993230	7993231	+	Frame_Shift_Ins	INS	-	-	ATAT	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	7993230	7993231	-	ATAT	INS	TNFRSF9	NM_001561.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.671_670	p.F224fs	0.918:0.008	NULL	HMMPfam_TNFR_c6,HMMSmart_TNFR,PatternScan_TNFR_NGFR_1,superfamily_SSF57586	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578290	7578290	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	17	7578290	7578290	C	G	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	splice_site	c.560-1	e5-1	1.000	-	-	-	no_errors
TRPC7	0	genome.wustl.edu	37	5	135692820	135692820	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	5	135692820	135692820	C	T	SNP	TRPC7	ENST00000513104	human	ensembl	58_37c	-1	known	missense	c.256	p.V86M	1.000	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_Ion_trans,HMMPfam_TRP_2	-	no_errors
WDR78	0	genome.wustl.edu	37	1	67371056	67371056	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	1	67371056	67371056	T	C	SNP	WDR78	NM_024763.4	human	genbank	58_37c	-1	validated	missense	c.173	p.N58S	0.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
XRCC1	0	genome.wustl.edu	37	19	44055732	44055732	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	19	44055732	44055732	G	A	SNP	XRCC1	NM_006297.2	human	genbank	58_37c	-1	reviewed	missense	c.1190	p.P397L	1.000	superfamily_BRCT domain	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMPfam_XRCC1_N,superfamily_Galactose-binding domain-like	-	no_errors
ZNF627	0	genome.wustl.edu	37	19	11728555	11728555	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A208-01A-11D-A159-09	TCGA-BH-A208-11A-51D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ae749fbb-6de7-4c51-b9d6-80a2ce7b5a29	e3c69830-05a7-4679-8d75-37591eade0bc	19	11728555	11728555	C	G	SNP	ZNF627	NM_145295.3	human	genbank	58_37c	+1	validated	missense	c.1237	p.H413D	0.975	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
