Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACIN1	0	genome.wustl.edu	37	14	23548943	23548943	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	14	23548943	23548943	C	A	SNP	ACIN1	NM_014977.3	human	genbank	58_37c	-1	validated	missense	c.1775	p.R592I	1.000	NULL	HMMPfam_SAP,HMMSmart_SM00513,superfamily_RNA-binding domain RBD,superfamily_SAP domain	-	no_errors
AFG3L1	0	genome.wustl.edu	37	16	90048301	90048301	+	RNA	SNP	C	C	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	16	90048301	90048301	C	A	SNP	AFG3L1	NR_003226.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.980	-	-	-	pseudogene
ARHGAP4	0	genome.wustl.edu	37	X	153174974	153174974	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	X	153174974	153174974	C	A	SNP	ARHGAP4	ENST00000454164	human	ensembl	58_37c	-1	known	missense	c.695	p.W232L	0.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_GTPase activation domain GAP	-	no_start_codon:pseudogene:no_stop_codon
ATF6	0	genome.wustl.edu	37	1	161821536	161821537	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	1	161821536	161821537	-	A	INS	ATF6	NM_007348.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1344_1345	p.A449fs	1.000:1.000	NULL	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1	-	no_errors
C12orf42	0	genome.wustl.edu	37	12	103700001	103700001	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	12	103700001	103700001	G	T	SNP	C12orf42	NM_001099336.1	human	genbank	58_37c	-1	validated	missense	c.382	p.R128S	0.000	NULL	NULL	-	no_errors
CCDC89	0	genome.wustl.edu	37	11	85396110	85396110	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	11	85396110	85396110	C	A	SNP	CCDC89	NM_152723.1	human	genbank	58_37c	-1	provisional	missense	c.1064	p.S355I	1.000	NULL	NULL	-	no_errors
CCRN4L	0	genome.wustl.edu	37	4	139964462	139964462	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	4	139964462	139964462	C	T	SNP	CCRN4L	NM_012118.2	human	genbank	58_37c	+1	reviewed	missense	c.425	p.P142L	1.000	NULL	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos	-	no_errors
CLEC9A	0	genome.wustl.edu	37	12	10213790	10213790	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	12	10213790	10213790	G	A	SNP	CLEC9A	NM_207345.2	human	genbank	58_37c	+1	provisional	silent	c.237	p.L79	0.003	NULL	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
CLOCK	0	genome.wustl.edu	37	4	56316278	56316279	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	4	56316278	56316279	GT	-	DEL	CLOCK	NM_004898.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1328_1327	p.T443fs	1.000:1.000	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,HMMSmart_SM00086,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
CPA6	0	genome.wustl.edu	37	8	68346411	68346411	+	Silent	SNP	C	C	T	rs138279913	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	8	68346411	68346411	C	T	SNP	CPA6	NM_020361.4	human	genbank	58_37c	-1	validated	silent	c.903	p.P301	0.518	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors,superfamily_Zn-dependent exopeptidases	-	no_errors
CSNK2A1P	0	genome.wustl.edu	37	11	11374371	11374371	+	RNA	SNP	T	T	G	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	11	11374371	11374371	T	G	SNP	CSNK2A1P	NR_002207.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.998	-	-	-	pseudogene
DENND1B	0	genome.wustl.edu	37	1	197641237	197641240	+	Frame_Shift_Del	DEL	TGTC	TGTC	-	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	TGTC	TGTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	1	197641237	197641240	TGTC	-	DEL	DENND1B	NM_001142795.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.226_223	p.D75fs	1.000:1.000:1.000:1.000	HMMPfam_uDENN,HMMSmart_SM00800	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800	-	no_errors
DYX1C1	0	genome.wustl.edu	37	15	55742419	55742419	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	15	55742419	55742419	C	A	SNP	DYX1C1	NM_130810.2	human	genbank	58_37c	-1	reviewed	splice_site	c.783+1	e5+1	1.000	-	-	-	no_errors
EEF1A1	0	genome.wustl.edu	37	6	74227785	74227786	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	6	74227785	74227786	-	A	INS	EEF1A1	NM_001402.5	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1232_1231	p.C411fs	1.000:1.000	HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,HMMPfam_GTP_EFTU_D3,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EIF4A2	0	genome.wustl.edu	37	3	186507018	186507018	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	3	186507018	186507018	C	T	SNP	EIF4A2	NM_001967.3	human	genbank	58_37c	+1	validated	missense	c.1184	p.T395I	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENPP5	0	genome.wustl.edu	37	6	46135740	46135740	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	6	46135740	46135740	T	A	SNP	ENPP5	NM_021572.4	human	genbank	58_37c	-1	validated	missense	c.260	p.N87I	1.000	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	12345	12345	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	MT	12345	12345	G	A	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	silent	c.9	p.M3	NULL	NULL	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000198786	0	genome.wustl.edu	37	MT	12682	12682	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	MT	12682	12682	C	T	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	nonsense	c.346	p.Q116*	NULL	HMMPfam_Oxidored_q1_N	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000198938	0	genome.wustl.edu	37	MT	9364	9364	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	MT	9364	9364	C	T	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	missense	c.158	p.T53I	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000205152	0	genome.wustl.edu	37	16	70268080	70268081	+	Missense_Mutation	DNP	TG	TG	CA	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	16	70268080	70268081	TG	CA	DNP	ENSG00000205152	ENST00000378955	human	ensembl	58_37c	-1	known	missense	c.409_408	p.N137D	1.000:0.997	NULL	NULL	-	no_errors
FAP	0	genome.wustl.edu	37	2	163072473	163072473	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	2	163072473	163072473	G	A	SNP	FAP	NM_004460.2	human	genbank	58_37c	-1	reviewed	silent	c.801	p.I267	0.412	HMMPfam_DPPIV_N,superfamily_SSF82171	HMMPfam_Peptidase_S9,HMMPfam_DPPIV_N,PatternScan_PRO_ENDOPEP_SER,superfamily_SSF53474,superfamily_SSF82171	-	no_errors
FN3K	0	genome.wustl.edu	37	17	80708303	80708303	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	17	80708303	80708303	C	T	SNP	FN3K	NM_022158.3	human	genbank	58_37c	+1	validated	missense	c.602	p.P201L	0.975	superfamily_Kinase_like	superfamily_Kinase_like,HMMPfam_Fructosamin_kin	-	no_errors
GBF1	0	genome.wustl.edu	37	10	104111081	104111081	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	10	104111081	104111081	G	A	SNP	GBF1	NM_004193.1	human	genbank	58_37c	+1	provisional	missense	c.364	p.V122M	1.000	NULL	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7	-	no_errors
GCAT	0	genome.wustl.edu	37	22	38206091	38206091	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	22	38206091	38206091	T	C	SNP	GCAT	NM_014291.3	human	genbank	58_37c	+1	reviewed	missense	c.254	p.I85T	1.000	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major	PatternScan_AA_TRANSFER_CLASS_2,HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major	-	no_errors
GGA1	0	genome.wustl.edu	37	22	38013003	38013003	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	22	38013003	38013003	C	T	SNP	GGA1	NM_013365.4	human	genbank	58_37c	+1	reviewed	missense	c.203	p.T68M	1.000	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288	HMMPfam_VHS,HMMPfam_GAT,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_ENTH/VHS domain,superfamily_Clathrin adaptor appendage domain,HMMSmart_SM00288,superfamily_GAT-like domain	-	no_errors
HKR1	0	genome.wustl.edu	37	19	37854220	37854220	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	19	37854220	37854220	G	A	SNP	HKR1	NM_181786.2	human	genbank	58_37c	+1	provisional	missense	c.1523	p.R508Q	0.006	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
KCND3	0	genome.wustl.edu	37	1	112321061	112321061	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	1	112321061	112321061	G	C	SNP	KCND3	NM_004980.3	human	genbank	58_37c	-1	reviewed	missense	c.1515	p.I505M	1.000	NULL	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
KRT84	0	genome.wustl.edu	37	12	52779276	52779276	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	12	52779276	52779276	G	A	SNP	KRT84	NM_033045.3	human	genbank	58_37c	-1	reviewed	missense	c.94	p.R32W	0.004	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
LOC100130171	0	genome.wustl.edu	37	2	174296171	174296171	+	RNA	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	2	174296171	174296171	G	A	SNP	LOC100130171	XR_038684.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.002	-	-	-	pseudogene
LOC100289289	0	genome.wustl.edu	37	15	62546460	62546461	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	15	62546460	62546461	-	CTC	INS	LOC100289289	XM_002343368.1	human	genbank	58_37c	-1	model	in_frame_ins	c.2320_2319	p.773in_frame_insE	0.998:0.999	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
LOC283685	0	genome.wustl.edu	37	15	23685826	23685828	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	15	23685826	23685828	TCT	-	DEL	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	in_frame_del	c.1585_1583	p.K528in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors
LOC388996	0	genome.wustl.edu	37	2	91801055	91801055	+	RNA	SNP	C	C	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	2	91801055	91801055	C	T	SNP	LOC388996	XR_017571.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.997	-	-	-	pseudogene
LRRC37A4	0	genome.wustl.edu	37	17	43591861	43591861	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	17	43591861	43591861	G	A	SNP	LRRC37A4	ENST00000443126	human	ensembl	58_37c	-1	known	missense	c.122	p.P41L	0.012	NULL	NULL	-	no_errors
MLL2	0	genome.wustl.edu	37	12	49427194	49427194	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	12	49427194	49427194	G	C	SNP	MLL2	NM_003482.3	human	genbank	58_37c	-1	validated	missense	c.11294	p.T3765R	0.294	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,PatternScan_RECOMBINASES_2,superfamily_HMG-box,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MSH3	0	genome.wustl.edu	37	5	80088607	80088607	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	5	80088607	80088607	A	G	SNP	MSH3	NM_002439.3	human	genbank	58_37c	+1	reviewed	missense	c.2599	p.I867V	1.000	HMMPfam_MutS_V,HMMSmart_SM00533,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_MutS_V,HMMSmart_SM00534,PatternScan_DNA_MISMATCH_REPAIR_2,HMMPfam_MutS_I,HMMPfam_MutS_III,HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III,HMMPfam_MutS_II,superfamily_DNA repair protein MutS domain II,superfamily_DNA repair protein MutS domain I,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195506579	195506579	+	Missense_Mutation	SNP	T	T	C	rs385805	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	3	195506579	195506579	T	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.11488	p.T3830A	0.255	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MYO18B	0	genome.wustl.edu	37	22	26164533	26164533	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	22	26164533	26164533	G	A	SNP	MYO18B	NM_032608.5	human	genbank	58_37c	+1	reviewed	missense	c.650	p.R217Q	0.000	NULL	HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NCOR2	0	genome.wustl.edu	37	12	124904522	124904522	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	12	124904522	124904522	C	T	SNP	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	missense	c.1463	p.R488Q	1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
OR7C1	0	genome.wustl.edu	37	19	14910637	14910638	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	19	14910637	14910638	-	A	INS	OR7C1	NM_198944.1	human	genbank	58_37c	-1	validated	frame_shift_ins	c.312_311	p.T105fs	0.001:0.017	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178916922	178916930	+	In_Frame_Del	DEL	ACCAGTAGG	ACCAGTAGG	-	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	ACCAGTAGG	ACCAGTAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	3	178916922	178916930	ACCAGTAGG	-	DEL	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.309_317	p.EPVG103in_frame_delD	0.998:1.000:1.000:0.995:1.000:1.000:0.996:1.000:1.000	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3CD	0	genome.wustl.edu	37	1	9784395	9784395	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	1	9784395	9784395	G	A	SNP	PIK3CD	NM_005026.3	human	genbank	58_37c	+1	validated	missense	c.2780	p.R927H	1.000	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like	HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLCE1	0	genome.wustl.edu	37	10	95994013	95994013	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	10	95994013	95994013	G	A	SNP	PLCE1	NM_016341.3	human	genbank	58_37c	+1	reviewed	missense	c.2158	p.A720T	0.992	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RA,HMMSmart_SM00314,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand	-	no_errors
POLQ	0	genome.wustl.edu	37	3	121206799	121206799	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	3	121206799	121206799	G	A	SNP	POLQ	NM_199420.3	human	genbank	58_37c	-1	validated	missense	c.4979	p.S1660L	0.000	NULL	HMMPfam_DNA_pol_A,HMMSmart_SM00482,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,superfamily_Ribonuclease H-like,HMMSmart_SM00487,PatternScan_DNA_POLYMERASE_A,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_DNA/RNA polymerases	-	no_errors
PRAMEF25	0	genome.wustl.edu	37	1	13141354	13141354	+	Silent	SNP	C	C	G	rs1320957	byFrequency	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	1	13141354	13141354	C	G	SNP	PRAMEF25	XM_497653.4	human	genbank	58_37c	+1	model	silent	c.513	p.V171	0.001	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRICKLE3	0	genome.wustl.edu	37	X	49034432	49034432	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	X	49034432	49034432	G	A	SNP	PRICKLE3	NM_006150.3	human	genbank	58_37c	-1	reviewed	missense	c.865	p.R289C	1.000	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_PET,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
PRKDC	0	genome.wustl.edu	37	8	48801132	48801132	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	8	48801132	48801132	C	A	SNP	PRKDC	ENST00000314191	human	ensembl	58_37c	-1	known	missense	c.4357	p.A1453S	0.994	NULL	HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),HMMPfam_NUC194,superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PVRL3	0	genome.wustl.edu	37	3	110841072	110841072	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	3	110841072	110841072	T	G	SNP	PVRL3	NM_015480.1	human	genbank	58_37c	+1	provisional	missense	c.904	p.S302A	1.000	superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
REL	0	genome.wustl.edu	37	2	61149040	61149040	+	Silent	SNP	A	A	G	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	2	61149040	61149040	A	G	SNP	REL	NM_002908.2	human	genbank	58_37c	+1	validated	silent	c.1230	p.S410	0.964	NULL	PatternScan_REL_1,HMMPfam_TIG,HMMSmart_IPT,superfamily_P53_like_DNA_bnd,HMMPfam_RHD,superfamily_Ig_E-set	-	no_errors
SCN5A	0	genome.wustl.edu	37	3	38592337	38592337	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	3	38592337	38592337	C	T	SNP	SCN5A	NM_001099404.1	human	genbank	58_37c	-1	reviewed	missense	c.5526	p.M1842I	1.000	NULL	HMMPfam_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SFRS11	0	genome.wustl.edu	37	1	70716188	70716188	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	1	70716188	70716188	T	C	SNP	SFRS11	NM_004768.2	human	genbank	58_37c	+1	reviewed	splice_site	c.1257+2	e11+2	1.000	-	-	-	no_errors
SLC16A2	0	genome.wustl.edu	37	X	73751293	73751293	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	X	73751293	73751293	C	T	SNP	SLC16A2	NM_006517.3	human	genbank	58_37c	+1	reviewed	nonsense	c.1747	p.Q583*	0.995	superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
SRCAP	0	genome.wustl.edu	37	16	30749899	30749899	+	Silent	SNP	A	A	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	16	30749899	30749899	A	T	SNP	SRCAP	NM_006662.2	human	genbank	58_37c	+1	validated	silent	c.8538	p.G2846	0.421	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,HMMPfam_AT_hook,HMMSmart_SM00384,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SYCP2	0	genome.wustl.edu	37	20	58448924	58448924	+	Missense_Mutation	SNP	C	C	T	rs148375197	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	20	58448924	58448924	C	T	SNP	SYCP2	NM_014258.2	human	genbank	58_37c	-1	reviewed	missense	c.3542	p.R1181Q	0.000	NULL	NULL	-	no_errors
TAF9	0	genome.wustl.edu	37	5	68661327	68661327	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	5	68661327	68661327	C	A	SNP	TAF9	NM_001015892.1	human	genbank	58_37c	-1	validated	missense	c.238	p.D80Y	1.000	HMMPfam_TFIID-31kDa,superfamily_Histone-fold	HMMPfam_TFIID-31kDa,superfamily_Histone-fold	-	no_errors
TLR3	0	genome.wustl.edu	37	4	187004711	187004711	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	4	187004711	187004711	C	T	SNP	TLR3	NM_003265.2	human	genbank	58_37c	+1	reviewed	missense	c.1871	p.S624F	0.032	superfamily_SSF52058	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR,HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	17	7578413	7578413	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.517	p.V173M	0.996	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TSGA13	0	genome.wustl.edu	37	7	130368439	130368439	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	7	130368439	130368439	C	G	SNP	TSGA13	NM_052933.2	human	genbank	58_37c	-1	provisional	missense	c.95	p.S32T	0.000	NULL	NULL	-	no_errors
TTN	0	genome.wustl.edu	37	2	179440959	179440959	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	2	179440959	179440959	C	G	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.62190	p.Q20730H	0.914	HMMPfam_fn3,HMMSmart_SM00060	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TTN	0	genome.wustl.edu	37	2	179587200	179587200	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	2	179587200	179587200	G	T	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	silent	c.18582	p.L6194	0.980	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TUBGCP5	0	genome.wustl.edu	37	15	22869955	22869956	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	15	22869955	22869956	-	G	INS	TUBGCP5	NM_001102610.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.2879_2880	p.A961fs	1.000:1.000	NULL	HMMPfam_Spc97_Spc98	-	no_errors
UNC13D	0	genome.wustl.edu	37	17	73832707	73832707	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	17	73832707	73832707	G	A	SNP	UNC13D	NM_199242.2	human	genbank	58_37c	-1	reviewed	missense	c.1244	p.S415F	0.008	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors
ZNF85	0	genome.wustl.edu	37	19	21132063	21132063	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A26X-01A-31D-A16D-09	TCGA-C8-A26X-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a5bc549a-1a1f-41b4-b548-14c448fed6c7	2b18b271-9411-4e2a-8f37-1e9cd53bef62	19	21132063	21132063	A	G	SNP	ZNF85	NM_003429.3	human	genbank	58_37c	+1	validated	missense	c.743	p.H248R	0.980	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),PatternScan_ZINC_PROTEASE,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
