Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
A2M	2	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	9225307	9225307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ABL1	25	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	133750263	133750263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ADAMTS2	9509	broad.mit.edu;hgsc.bcm.edu	37	5	178771139	178771139	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ADAR	103	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	154574246	154574246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
AHCTF1	25909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	247061603	247061603	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ALDH1B1	219	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	38395753	38395753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ALG13	79868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	110964871	110964871	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ANKK1	255239	broad.mit.edu;hgsc.bcm.edu	37	11	113270032	113270032	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ANKRD50	57182	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	125631599	125631599	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
APOBEC1	339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	7802168	7802168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ARFGEF1	10565	hgsc.bcm.edu;ucsc.edu	37	8	68137214	68137214	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ARID5A	10865	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	97217964	97217964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ARMCX5	64860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	101857826	101857826	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ARMCX6	54470	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	100871360	100871360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ATP10D	57205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	47559972	47559972	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ATP13A1	57130	broad.mit.edu;hgsc.bcm.edu	37	19	19767887	19767887	+	Silent	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ATP1A4	480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	160151511	160151511	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
AXIN1	8312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	396564	396564	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
BAT1	0	broad.mit.edu;hgsc.bcm.edu	37	6	31507024	31507024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
BCKDK	10295	hgsc.bcm.edu;ucsc.edu	37	16	31123280	31123280	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
BCL11B	64919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	99640573	99640573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
C11orf41	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	33565649	33565649	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
C15orf40	123207	hgsc.bcm.edu	37	15	83677271	83677271	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
C1orf14	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	182908433	182908433	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
C9orf5	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	111855820	111855820	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CAMTA2	23125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4872277	4872277	+	Splice_Site	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CANX	821	broad.mit.edu;hgsc.bcm.edu	37	5	179149818	179149818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CASQ2	845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	116243998	116243998	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CCDC116	164592	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	21989453	21989453	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CCT8	10694	broad.mit.edu;hgsc.bcm.edu	37	21	30442596	30442596	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CDH6	1004	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	31299715	31299715	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CDKL5	6792	broad.mit.edu;ucsc.edu	37	X	18622812	18622812	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CDX1	1044	broad.mit.edu;hgsc.bcm.edu	37	5	149563073	149563073	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CEBPG	1054	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	33870405	33870405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
COL6A3	1293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	238280464	238280464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
COQ5	84274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	120954469	120954469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CRYGB	1419	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	209007637	209007637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CSPG4	1464	hgsc.bcm.edu	37	15	75982360	75982360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CYP19A1	1588	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51514629	51514629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
CYP2C19	1557	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	96580386	96580386	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
DEM1	0	hgsc.bcm.edu;ucsc.edu	37	1	40980774	40980783	+	Frame_Shift_Del	DEL	TACAGCCAAG	TACAGCCAAG	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	TACAGCCAAG	TACAGCCAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
DOCK7	85440	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	62973695	62973695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
DOPEY2	9980	hgsc.bcm.edu;ucsc.edu	37	21	37617853	37617854	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
DPPA2	151871	hgsc.bcm.edu;ucsc.edu	37	3	109031497	109031503	+	Frame_Shift_Del	DEL	AAATCAC	AAATCAC	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	AAATCAC	AAATCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
DUS2L	54920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	68071947	68071947	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
EFR3A	23167	broad.mit.edu;hgsc.bcm.edu	37	8	132956999	132956999	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
EIF2AK2	5610	broad.mit.edu;ucsc.edu	37	2	37366825	37366825	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
EIF4G1	1981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	184049812	184049812	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ELMOD3	84173	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	85598666	85598666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
EMILIN2	84034	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	2890714	2890714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
EML5	161436	broad.mit.edu;hgsc.bcm.edu	37	14	89202708	89202708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ENPP3	5169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	131995388	131995388	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
EPB41L4B	54566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	111979310	111979310	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
EPHX1	2052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	226027665	226027665	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ETV3	2117	broad.mit.edu;hgsc.bcm.edu	37	1	157105442	157105442	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
FAM123C	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	131521736	131521736	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
FAM178A	55719	hgsc.bcm.edu	37	10	102676847	102676847	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
FAM178A	55719	hgsc.bcm.edu;ucsc.edu	37	10	102676845	102676845	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
FAM190B	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	86130950	86130950	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
FAM19A4	151647	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	68788346	68788346	+	Silent	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
FAM5B	57795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	177249817	177249817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
FRYL	285527	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	48566087	48566087	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
FTSJ3	117246	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61898808	61898808	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
GABRE	2564	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	151123262	151123262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
GNA13	10672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	63010386	63010386	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
GPATCH2	55105	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	217665062	217665062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
GPR133	283383	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	131616270	131616270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
GRAMD1A	57655	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	35501012	35501012	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
GSPT1	2935	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	11971401	11971401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
HIVEP1	3096	hgsc.bcm.edu;ucsc.edu	37	6	12161803	12161803	+	Frame_Shift_Del	DEL	C	C	-	rs34103769		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
HJURP	55355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	234754423	234754423	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
HSP90AA1	3320	broad.mit.edu;hgsc.bcm.edu	37	14	102552583	102552583	+	Missense_Mutation	SNP	G	G	C	rs11547522	alternate_allele	TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
HSPH1	10808	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	31729705	31729705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
HTR2C	3358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	113965887	113965887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
INTS8	55656	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	95861709	95861709	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
IRAK1	3654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	153278674	153278674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
KCNJ18	100134444	hgsc.bcm.edu	37	17	21318760	21318760	+	Missense_Mutation	SNP	G	G	T	rs74880280	bycluster;byfrequency	TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
KIAA0913	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	75556685	75556685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
KIAA1409	0	broad.mit.edu;hgsc.bcm.edu	37	14	94129061	94129061	+	Splice_Site	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
KIF27	55582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	86518027	86518027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
LONRF3	79836	broad.mit.edu;hgsc.bcm.edu	37	X	118108850	118108850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
LRP2	4036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	170103247	170103247	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
MAGEE1	57692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	75650469	75650469	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
MAP3K1	4214	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	56160679	56160679	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
MARS2	92935	hgsc.bcm.edu	37	2	198570416	198570416	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
MCCC1	56922	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	182759359	182759359	+	Silent	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
MFN1	55669	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	179096586	179096586	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
MFSD7	84179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	677418	677418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
MKRN3	7681	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	23811293	23811293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
MYH14	79784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	50753042	50753042	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
MYO9B	4650	hgsc.bcm.edu	37	19	17311226	17311226	+	Missense_Mutation	SNP	G	G	A	rs117099942	byfrequency;by1000genomes	TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
N4BP2L2	10443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	33110320	33110320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
NACA	4666	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57114669	57114669	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
NALCN	259232	hgsc.bcm.edu;ucsc.edu	37	13	101797201	101797201	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
NCAPG2	54892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	158447311	158447311	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
NLRP4	147945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56369055	56369055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
NOTCH2	4853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	120462002	120462002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
NPHS1	4868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	36340513	36340513	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
NR3C2	4306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	149356735	149356735	+	Silent	SNP	T	T	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
OGFOD1	55239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	56485531	56485531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
OGG1	4968	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	9792055	9792055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
OR52L1	338751	broad.mit.edu;hgsc.bcm.edu	37	11	6007950	6007950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
OSTalpha	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	195954575	195954575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
PAPPA	5069	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	118982390	118982390	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52651349	52651353	+	Frame_Shift_Del	DEL	CACCA	CACCA	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	CACCA	CACCA	CACCA	-	CACCA	CACCA	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
PCDH11X	27328	broad.mit.edu;hgsc.bcm.edu	37	X	91873325	91873325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
PDIA2	64714	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	336870	336870	+	Silent	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
PMP22	5376	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	15142905	15142905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
PRDM12	59335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	133542139	133542139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
PRTG	283659	hgsc.bcm.edu;ucsc.edu	37	15	55971529	55971529	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
PTK7	5754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	43107181	43107181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
PTPN18	26469	hgsc.bcm.edu;ucsc.edu	37	2	131128292	131128292	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
PTPN3	5774	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	112172526	112172526	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
PTPRZ1	5803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	121650685	121650685	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
QSER1	79832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	32955024	32955024	+	Silent	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
RAD51	5888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	41022091	41022091	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
RECQL5	9400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	73657711	73657711	+	Silent	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
RIMS4	140730	broad.mit.edu;hgsc.bcm.edu	37	20	43386410	43386410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
RPH3AL	9501	broad.mit.edu;hgsc.bcm.edu	37	17	169255	169255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
RYR2	6262	broad.mit.edu;hgsc.bcm.edu	37	1	237586481	237586481	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
SART3	9733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	108929135	108929136	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
SBF1	6305	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	50903133	50903133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
SCARNA9	619383	broad.mit.edu;hgsc.bcm.edu	37	11	93454688	93454688	+	RNA	SNP	G	G	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
SCN11A	11280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38962724	38962724	+	Silent	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
SEMA4A	64218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156127886	156127886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
SLC16A4	9122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110906399	110906399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
SMC1A	8243	hgsc.bcm.edu;ucsc.edu	37	X	53430820	53430820	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
SNW1	22938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	78184796	78184796	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ST6GAL2	84620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	107460175	107460175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ST6GALNAC3	256435	hgsc.bcm.edu;ucsc.edu	37	1	77094481	77094482	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
SULF1	23213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	70514054	70514054	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
SULT2A1	6822	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	48385434	48385434	+	Silent	SNP	A	A	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
TANC2	26115	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	61498351	61498351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
TECRL	253017	broad.mit.edu;hgsc.bcm.edu	37	4	65274893	65274893	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
TFDP3	51270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	132351883	132351883	+	Silent	SNP	G	G	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
THAP9	79725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	83838940	83838940	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
TMPRSS15	5651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	19698767	19698767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
TRPM6	140803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	77435329	77435329	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
TTC12	54970	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	113230094	113230094	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	179490104	179490104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
UROC1	131669	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	126216954	126216954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
WDR72	256764	hgsc.bcm.edu;ucsc.edu	37	15	53907894	53907895	+	Frame_Shift_Ins	INS	-	-	TTCAT	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
WNK1	65125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	862733	862733	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ZAK	51776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	174131419	174131419	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
AZI1	22994	broad.mit.edu	37	17	79169644	79169644	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
DDX12	0	broad.mit.edu	37	12	9573258	9573258	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
DYNC2H1	79659	broad.mit.edu	37	11	103093809	103093809	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
GUSBP1	728411	broad.mit.edu	37	5	21459810	21459810	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
KRTAP5-4	387267	broad.mit.edu	37	11	1643006	1643006	+	Silent	SNP	G	C	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
POLQ	10721	broad.mit.edu	37	3	121263752	121263752	+	Silent	SNP	T	C	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
TFE3	7030	broad.mit.edu	37	X	48900725	48900725	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
Unknown	0	broad.mit.edu	37	17	18333107	18333107	+	RNA	SNP	G	C	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
Unknown	0	broad.mit.edu	37	4	120116717	120116717	+	Missense_Mutation	SNP	C	A	A	rs149257591	by1000genomes;alternate_allele	TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
VHL	7428	broad.mit.edu	37	3	10183725	10183725	+	Missense_Mutation	SNP	C	T	T	rs5030826	alternate_allele	TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	Illumina Miseq			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
YME1L1	10730	broad.mit.edu	37	10	27437893	27437893	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
ZER1	10444	broad.mit.edu	37	9	131514950	131514950	+	Splice_Site	SNP	A	C	C	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
MSR1	4481	broad.mit.edu	37	8	16026114	16026114	+	Silent	SNP	G	T	T	novel		TCGA-CJ-4920-01A-01D-1429-08	TCGA-CJ-4920-11A-01D-1429-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM	.	.	Illumina GAIIx	12bf3338-f541-45a9-9fb7-e84931ba5ed8	3879491a-93eb-40d1-83ba-d90b98dabffe	
