Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CTRC	11330	genome.wustl.edu	37	1	15770022	15770022	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_007272.2	+1	reviewed	p.C155	1.000	43	0%	85	36.5%	1	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ARID1A	8289	genome.wustl.edu	37	1	27107013	27107013	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_006015.4	+1	reviewed	p.Q2209fs	1.000	-	-	-	-	-	-	-	-	-	NULL
SRSF11	9295	genome.wustl.edu	37	1	70710389	70710389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_004768.2	+1	reviewed	p.R275W	0.999	131	0%	238	39.9%	76	39.4%	unknown(0)	deleterious(0.01)	-	NULL
LOC100132733	100132733	genome.wustl.edu	37	1	143265476	143265476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	XM_001715342.2	-1	model	p.D19N	0.248	29	0%	31	16.1%	0	-	-	-	-	NULL
LINGO4	339398	genome.wustl.edu	37	1	151774060	151774060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_001004432.2	-1	provisional	p.R374H	0.000	32	0%	71	31%	0	-	benign(0.015)	tolerated(0.16)	neutral(0.060)	HMMSmart_LRRCT,superfamily_SSF52058
GPA33	10223	genome.wustl.edu	37	1	167042624	167042624	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_005814.1	-1	reviewed	p.T66P	0.001	123	0%	372	26.9%	0	-	benign(0.004)	tolerated(0.12)	neutral(0.261)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
DNAH6	1768	genome.wustl.edu	37	2	84897542	84897542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_001370.1	+1	validated	p.A2133P	0.902	209	1%	138	35.5%	3	0%	benign(0.196)	tolerated(0.22)	neutral(0.060)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
IGKV1-37	28931	genome.wustl.edu	37	2	89597038	89597038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	ENST00000465170	-1	known	p.R112W	0.004	227	0%	298	18.5%	0	-	benign(0.288)	deleterious(0)	deleterious(0.533)	HMMSmart_SM00406,superfamily_Immunoglobulin
HS6ST1	9394	genome.wustl.edu	37	2	129025860	129025860	+	Missense_Mutation	SNP	C	C	T	rs147436494	by1000genomes	TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_004807.2	-1	reviewed	p.R371H	1.000	21	0%	40	25%	8	0%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_HS6ST
PIK3CB	5291	genome.wustl.edu	37	3	138417868	138417868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_006219.1	-1	provisional	p.C551R	1.000	103	0%	115	41.7%	5	100%	benign(0.105)	tolerated(0.33)	neutral(0.032)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
KPNA4	3840	genome.wustl.edu	37	3	160227649	160227649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_002268.3	-1	reviewed	p.G383D	1.000	400	0%	304	40.1%	25	52%	benign(0.344)	tolerated(0.46)	neutral(0.120)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_006218.2	+1	reviewed	p.E545K	1.000	174	0%	105	37.1%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
WDFY3	23001	genome.wustl.edu	37	4	85600284	85600284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_014991.4	-1	reviewed	p.R3312Q	0.392	100	0%	133	41.4%	9	11.1%	benign(0.404)	tolerated(0.41)	neutral(0.145)	superfamily_WD40 repeat-like
CDH18	1016	genome.wustl.edu	37	5	19747280	19747280	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_004934.3	-1	reviewed	p.G98	1.000	213	0%	327	43.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
RAB3C	115827	genome.wustl.edu	37	5	58147161	58147161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_138453.2	+1	provisional	p.P223S	1.000	40	0%	106	43.4%	1	100%	benign(0)	tolerated(1)	-	superfamily_SSF52540
SLC6A7	6534	genome.wustl.edu	37	5	149576810	149576810	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_014228.3	+1	validated	p.C185	0.988	24	0%	70	45.7%	0	-	-	-	-	HMMPfam_SNF
KCND2	3751	genome.wustl.edu	37	7	120381610	120381610	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_012281.2	+1	reviewed	p.R434P	1.000	188	0%	164	39%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
ERCC6	2074	genome.wustl.edu	37	10	50681554	50681554	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_000124.2	-1	reviewed	p.S893*	0.999	318	0%	533	42%	1	0%	-	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
PTEN	5728	genome.wustl.edu	37	10	89720799	89720802	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	TACT	TACT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	ENST00000371953	+1	known	p.T319fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
ADAM12	8038	genome.wustl.edu	37	10	127806693	127806693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_003474.4	-1	reviewed	p.R176W	0.007	241	0%	380	41.6%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
KRAS	3845	genome.wustl.edu	37	12	25398280	25398280	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_033360.2	-1	reviewed	p.G13	1.000	212	0%	296	57.1%	5	40%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
KRAS	3845	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	A	rs112445441	byCluster	TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_033360.2	-1	reviewed	p.G13V	1.000	212	0%	297	54.9%	5	40%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
KRT2	3849	genome.wustl.edu	37	12	53042043	53042043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_000423.2	-1	reviewed	p.D346Y	1.000	255	0%	780	26.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT3	3850	genome.wustl.edu	37	12	53185077	53185077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_057088.2	-1	reviewed	p.R483H	0.523	82	0%	280	48.6%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_Filament
SLC25A21	89874	genome.wustl.edu	37	14	37194792	37194792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_030631.3	-1	validated	p.R141W	1.000	138	0%	125	39.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SSTR1	6751	genome.wustl.edu	37	14	38679057	38679057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_001049.2	+1	reviewed	p.R155C	1.000	44	0%	163	33.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
SERPINA5	5104	genome.wustl.edu	37	14	95056501	95056501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_000624.4	+1	validated	p.R248L	0.001	97	0%	188	40.4%	54	40.7%	possibly_damaging(0.656)	deleterious(0.04)	deleterious(0.580)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
MED24	9862	genome.wustl.edu	37	17	38179608	38179608	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_014815.3	-1	reviewed	p.D676fs	0.998	-	-	-	-	-	-	-	-	-	NULL
MED24	9862	genome.wustl.edu	37	17	38186102	38186102	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_014815.3	-1	reviewed	p.R389*	1.000	330	0%	737	39.6%	16	12.5%	-	-	-	NULL
CNP	1267	genome.wustl.edu	37	17	40120686	40120718	+	In_Frame_Del	DEL	CTCCGCAAAGCCGGCCAGGTCTTCCTGGAAGAG	CTCCGCAAAGCCGGCCAGGTCTTCCTGGAAGAG	-	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	CTCCGCAAAGCCGGCCAGGTCTTCCTGGAAGAG	CTCCGCAAAGCCGGCCAGGTCTTCCTGGAAGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_033133.4	+1	validated	p.RKAGQVFLEEL203in_frame_del	0.826:0.829:0.110:0.022:0.012:0.010:0.231:0.227:0.100:0.078:0.061:0.004:0.961:0.987:0.986:1.000:1.000:1.000:0.999:0.998:0.991:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_CNPase,superfamily_LigT-like
KANSL1	284058	genome.wustl.edu	37	17	44172014	44172017	+	Frame_Shift_Del	DEL	CGGC	CGGC	-	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	CGGC	CGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_015443.2	-1	validated	p.S447fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KANSL1	284058	genome.wustl.edu	37	17	44172019	44172026	+	Frame_Shift_Del	DEL	GACAATAG	GACAATAG	-	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	GACAATAG	GACAATAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_015443.2	-1	validated	p.A444fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ARHGEF18	23370	genome.wustl.edu	37	19	7521237	7521237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_001130955.1	+1	reviewed	p.D522G	0.998	194	0%	415	39.8%	26	65.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
TSHZ3	57616	genome.wustl.edu	37	19	31767496	31767496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_020856.2	-1	validated	p.P1068L	1.000	287	0%	517	35.6%	11	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RYR1	6261	genome.wustl.edu	37	19	38995394	38995394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_000540.2	+1	reviewed	p.D2692N	1.000	35	0%	121	45.5%	0	-	probably_damaging(0.994)	-	-	NULL
CYP2F1	1572	genome.wustl.edu	37	19	41627960	41627960	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_000774.3	+1	reviewed	p.S248	0.000	46	0%	184	47.8%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
SIGLEC10	89790	genome.wustl.edu	37	19	51919315	51919315	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_033130.4	-1	validated	p.S287	1.000	40	0%	46	32.6%	1	100%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ASXL1	171023	genome.wustl.edu	37	20	31022447	31022447	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_015338.5	+1	reviewed	p.G644	1.000	8	0.000	17	0.471	5	20%	-	-	-	NULL
MYH7B	57644	genome.wustl.edu	37	20	33573915	33573915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_020884.3	+1	reviewed	p.K315R	1.000	50	0%	85	38.8%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNQ2	3785	genome.wustl.edu	37	20	62050978	62050978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_172107.2	-1	reviewed	p.R432H	1.000	19	0%	31	29%	0	-	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
SPECC1L	23384	genome.wustl.edu	37	22	24807663	24807663	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_001145468.1	+1	validated	p.S1065	1.000	69	0%	159	34%	25	56%	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
CXorf59	286464	genome.wustl.edu	37	X	36103590	36103590	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	NM_173695.2	+1	validated	p.V192	0.017	153	0%	132	32.6%	2	100%	-	-	-	NULL
LOC729275	729275	genome.wustl.edu	37	X	48434097	48434097	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16O-01A-11D-A12J-09	TCGA-D1-A16O-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8ab825e7-cc0c-4c63-ad5e-ca073d32eaa1	f161d1aa-794b-4faa-a60e-4d2b680f4578	XR_078586.1	-1	model	NULL	0.011	44	0%	92	43.5%	15	0%	-	-	-	-
