Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB11	0	genome.wustl.edu	37	2	169791842	169791842	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	169791842	169791842	G	A	SNP	ABCB11	NM_003742.2	human	genbank	58_37c	-1	reviewed	missense	c.2908	p.P970S	1.000	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCG4	0	genome.wustl.edu	37	11	119029289	119029289	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	11	119029289	119029289	T	G	SNP	ABCG4	NM_001142505.1	human	genbank	58_37c	+1	reviewed	missense	c.1190	p.M397R	0.998	HMMPfam_ABC2_membrane	HMMPfam_ABC_tran,HMMSmart_SM00382,HMMPfam_ABC2_membrane,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABL2	0	genome.wustl.edu	37	1	179090960	179090960	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	179090960	179090960	G	A	SNP	ABL2	NM_007314.3	human	genbank	58_37c	-1	reviewed	missense	c.730	p.L244F	1.000	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_F_actin_bind,HMMSmart_SM00808,PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain	-	no_errors
ACCN2	0	genome.wustl.edu	37	12	50453668	50453668	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	12	50453668	50453668	C	T	SNP	ACCN2	NM_020039.2	human	genbank	58_37c	+1	reviewed	silent	c.489	p.H163	1.000	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	no_errors
ACSM4	0	genome.wustl.edu	37	12	7480932	7480932	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	12	7480932	7480932	G	A	SNP	ACSM4	NM_001080454.1	human	genbank	58_37c	+1	provisional	missense	c.1706	p.R569H	1.000	superfamily_SSF56801	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_SSF56801	-	no_errors
ACTN4	0	genome.wustl.edu	37	19	39219642	39219642	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	19	39219642	39219642	G	A	SNP	ACTN4	NM_004924.3	human	genbank	58_37c	+1	reviewed	missense	c.2425	p.A809T	0.951	superfamily_SSF47473	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_efhand_Ca_insen,superfamily_Calponin-homology,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473	-	no_errors
AFF3	0	genome.wustl.edu	37	2	100199290	100199290	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	100199290	100199290	G	T	SNP	AFF3	NM_001025108.1	human	genbank	58_37c	-1	reviewed	missense	c.2838	p.S946R	0.583	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
ARID1A	0	genome.wustl.edu	37	1	27106230	27106230	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	27106230	27106230	G	T	SNP	ARID1A	NM_006015.4	human	genbank	58_37c	+1	reviewed	missense	c.5841	p.Q1947H	1.000	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	-	no_errors
B3GALTL	0	genome.wustl.edu	37	13	31891805	31891805	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	13	31891805	31891805	C	T	SNP	B3GALTL	NM_194318.3	human	genbank	58_37c	+1	reviewed	silent	c.1167	p.Y389	0.998	HMMPfam_Fringe	PatternScan_ER_TARGET,HMMPfam_Fringe	-	no_errors
BCAR1	0	genome.wustl.edu	37	16	75267803	75267803	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	16	75267803	75267803	C	A	SNP	BCAR1	NM_014567.3	human	genbank	58_37c	-1	validated	nonsense	c.2041	p.E681*	1.000	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Serine_rich	-	no_errors
BET3L	0	genome.wustl.edu	37	6	116821736	116821736	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	6	116821736	116821736	G	T	SNP	BET3L	NM_001139444.2	human	genbank	58_37c	-1	validated	missense	c.334	p.L112M	0.963	HMMPfam_TRAPP	HMMPfam_TRAPP	-	no_errors
C17orf104	0	genome.wustl.edu	37	17	42744064	42744064	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	42744064	42744064	A	C	SNP	C17orf104	NM_001145080.2	human	genbank	58_37c	+1	validated	missense	c.785	p.E262A	1.000	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
C5orf4	0	genome.wustl.edu	37	5	154200094	154200094	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	5	154200094	154200094	C	G	SNP	C5orf4	ENST00000423554	human	ensembl	58_37c	-1	known	missense	c.3	p.M1I	0.250	NULL	NULL	-	no_errors
CAPG	0	genome.wustl.edu	37	2	85628923	85628923	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	85628923	85628923	G	C	SNP	CAPG	NM_001747.2	human	genbank	58_37c	-1	reviewed	missense	c.181	p.L61V	1.000	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins	-	no_errors
CD200R1	0	genome.wustl.edu	37	3	112666767	112666767	+	Silent	SNP	C	C	T	rs145811094	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	3	112666767	112666767	C	T	SNP	CD200R1	NM_138806.3	human	genbank	58_37c	-1	reviewed	silent	c.72	p.A24	0.000	NULL	HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
CDK14	0	genome.wustl.edu	37	7	90585061	90585061	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	7	90585061	90585061	G	C	SNP	CDK14	NM_012395.2	human	genbank	58_37c	+1	validated	silent	c.822	p.V274	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_CYTOCHROME_B5_1	-	no_errors
CDYL2	0	genome.wustl.edu	37	16	80667011	80667011	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	16	80667011	80667011	A	C	SNP	CDYL2	NM_152342.2	human	genbank	58_37c	-1	validated	missense	c.739	p.C247G	1.000	NULL	HMMPfam_Chromo,HMMSmart_CHROMO,PatternScan_CHROMO_1,HMMPfam_ECH,superfamily_Chromodomain-like,superfamily_SSF52096	-	no_errors
CILP	0	genome.wustl.edu	37	15	65494258	65494258	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	15	65494258	65494258	T	C	SNP	CILP	NM_003613.3	human	genbank	58_37c	-1	reviewed	missense	c.1138	p.S380G	1.000	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Carboxypeptidase regulatory domain,HMMPfam_ig,PatternScan_HEXAPEP_TRANSFERASES,superfamily_Immunoglobulin	-	no_errors
COL6A3	0	genome.wustl.edu	37	2	238283417	238283417	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	238283417	238283417	G	A	SNP	COL6A3	NM_004369.3	human	genbank	58_37c	-1	reviewed	missense	c.3317	p.P1106L	0.999	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like	-	no_errors
CR2	0	genome.wustl.edu	37	1	207653332	207653342	+	Frame_Shift_Del	DEL	CAGGTTTGATA	CAGGTTTGATA	-	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	CAGGTTTGATA	CAGGTTTGATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	207653332	207653342	CAGGTTTGATA	-	DEL	CR2	NM_001006658.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.3122_3132	p.G1042fs	0.000:0.000:0.003:0.001:0.000:0.000:0.000:0.000:0.000:0.001:0.000	NULL	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	-	no_errors
CRIPAK	0	genome.wustl.edu	37	4	1388441	1388441	+	Missense_Mutation	SNP	A	A	G	rs144787346	byFrequency	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	4	1388441	1388441	A	G	SNP	CRIPAK	NM_175918.3	human	genbank	58_37c	+1	validated	missense	c.142	p.M48V	0.008	HMMSmart_PostSET	HMMSmart_PostSET	-	no_errors
CSPG4	0	genome.wustl.edu	37	15	75977998	75977998	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	15	75977998	75977998	C	A	SNP	CSPG4	NM_001897.4	human	genbank	58_37c	-1	reviewed	silent	c.3834	p.V1278	0.886	NULL	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
CYP21A2	0	genome.wustl.edu	37	6	32007206	32007206	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	6	32007206	32007206	G	A	SNP	CYP21A2	NM_000500.5	human	genbank	58_37c	+1	reviewed	missense	c.521	p.C174Y	0.603	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DCHS2	0	genome.wustl.edu	37	4	155191053	155191057	+	Frame_Shift_Del	DEL	TGACT	TGACT	-	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	TGACT	TGACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	4	155191053	155191057	TGACT	-	DEL	DCHS2	NM_017639.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.5211_5207	p.K1736fs	1.000:1.000:0.933:0.001:0.002	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
DEFB133	0	genome.wustl.edu	37	6	49917113	49917113	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	6	49917113	49917113	G	T	SNP	DEFB133	ENST00000398721	human	ensembl	58_37c	-1	known	silent	c.45	p.V15	0.001	NULL	NULL	-	no_errors
DNAH11	0	genome.wustl.edu	37	7	21640549	21640549	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	7	21640549	21640549	G	A	SNP	DNAH11	NM_003777.3	human	genbank	58_37c	+1	reviewed	splice_site	c.3255+1	e16+1	1.000	-	-	-	no_errors
ENSG00000198763	0	genome.wustl.edu	37	MT	5270	5270	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	MT	5270	5270	C	A	SNP	ENSG00000198763	ENST00000361453	human	ensembl	58_37c	+1	known	missense	c.801	p.I267M	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000198786	0	genome.wustl.edu	37	MT	13676	13676	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	MT	13676	13676	A	G	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.1340	p.N447S	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000210082	0	genome.wustl.edu	37	MT	3127	3127	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	MT	3127	3127	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
FAM186A	0	genome.wustl.edu	37	12	50745822	50745822	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	12	50745822	50745822	T	G	SNP	FAM186A	NM_001145475.1	human	genbank	58_37c	-1	provisional	missense	c.4793	p.E1598A	0.000	NULL	NULL	-	no_errors
GALNT7	0	genome.wustl.edu	37	4	174169552	174169552	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	4	174169552	174169552	T	A	SNP	GALNT7	NM_017423.2	human	genbank	58_37c	+1	reviewed	missense	c.548	p.I183N	1.000	superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GIP	0	genome.wustl.edu	37	17	47044526	47044526	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	47044526	47044526	C	G	SNP	GIP	NM_004123.2	human	genbank	58_37c	-1	reviewed	missense	c.69	p.K23N	0.081	NULL	HMMPfam_Hormone_2,HMMSmart_GLUCA,PatternScan_GLUCAGON	-	no_errors
GPRIN3	0	genome.wustl.edu	37	4	90169141	90169141	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	4	90169141	90169141	G	T	SNP	GPRIN3	NM_198281.2	human	genbank	58_37c	-1	validated	silent	c.2121	p.I707	0.705	NULL	NULL	-	no_errors
HGSNAT	0	genome.wustl.edu	37	8	43046629	43046629	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	8	43046629	43046629	C	G	SNP	HGSNAT	NM_152419.2	human	genbank	58_37c	+1	reviewed	missense	c.1141	p.L381V	0.001	HMMPfam_DUF2261	HMMPfam_DUF2261	-	no_errors
HSPD1	0	genome.wustl.edu	37	2	198363501	198363501	+	Silent	SNP	C	C	T	rs78187001	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	198363501	198363501	C	T	SNP	HSPD1	NM_002156.4	human	genbank	58_37c	-1	reviewed	silent	c.72	p.R24	0.995	NULL	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,PatternScan_CHAPERONINS_CPN60,superfamily_SSF52029,superfamily_SSF54849	-	no_errors
IKBKE	0	genome.wustl.edu	37	1	206658614	206658614	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	206658614	206658614	G	T	SNP	IKBKE	NM_014002.2	human	genbank	58_37c	+1	validated	missense	c.1587	p.K529N	0.997	NULL	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
IL5RA	0	genome.wustl.edu	37	3	3144387	3144387	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	3	3144387	3144387	A	T	SNP	IL5RA	NM_000564.3	human	genbank	58_37c	-1	reviewed	missense	c.200	p.V67E	1.000	NULL	HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2,superfamily_Fibronectin type III	-	no_errors
IQCD	0	genome.wustl.edu	37	12	113633598	113633598	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	12	113633598	113633598	G	A	SNP	IQCD	NM_138451.1	human	genbank	58_37c	-1	provisional	nonsense	c.826	p.Q276*	0.986	NULL	HMMPfam_IQ,HMMSmart_IQ	-	no_errors
KIAA1012	0	genome.wustl.edu	37	18	29426707	29426707	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	18	29426707	29426707	T	A	SNP	KIAA1012	NM_014939.3	human	genbank	58_37c	-1	validated	missense	c.3809	p.K1270I	1.000	NULL	superfamily_TPR-like	-	no_errors
KIAA1199	0	genome.wustl.edu	37	15	81212548	81212548	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	15	81212548	81212548	C	A	SNP	KIAA1199	NM_018689.1	human	genbank	58_37c	+1	validated	silent	c.1911	p.T637	1.000	NULL	HMMPfam_G8	-	no_errors
KIF1A	0	genome.wustl.edu	37	2	241710387	241710387	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	241710387	241710387	C	A	SNP	KIF1A	NM_004321.4	human	genbank	58_37c	-1	reviewed	splice_site	c.1314+1	e13+1	1.000	-	-	-	no_errors
KIF22	0	genome.wustl.edu	37	16	29815348	29815348	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	16	29815348	29815348	G	A	SNP	KIF22	NM_007317.1	human	genbank	58_37c	+1	reviewed	missense	c.1639	p.E547K	0.000	NULL	HMMPfam_Kinesin,HMMSmart_KISc,HMMSmart_HhH1,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
KRTAP4-7	0	genome.wustl.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	39240627	39240627	T	C	SNP	KRTAP4-7	ENST00000377731	human	ensembl	58_37c	+1	known	missense	c.169	p.S57P	0.032	PatternScan_TNFR_NGFR_1,HMMPfam_Keratin_B2	PatternScan_TNFR_NGFR_1,HMMPfam_Keratin_B2	-	no_errors
LOC100289317	0	genome.wustl.edu	37	22	45723948	45723948	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	22	45723948	45723948	T	C	SNP	LOC100289317	XM_002343782.1	human	genbank	58_37c	-1	model	silent	c.294	p.P98	0.352	NULL	NULL	-	no_errors
LOC644157	0	genome.wustl.edu	37	17	43663305	43663305	+	RNA	SNP	G	G	A	rs184679980	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	43663305	43663305	G	A	SNP	LOC644157	XR_017515.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.951	-	-	-	pseudogene
LOC646214	0	genome.wustl.edu	37	15	21937749	21937750	+	RNA	INS	-	-	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	15	21937749	21937750	-	A	INS	LOC646214	NR_027053.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.999:1.000	-	-	-	pseudogene
LOC728806	0	genome.wustl.edu	37	17	44552565	44552565	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	44552565	44552565	G	T	SNP	LOC728806	XM_001128535.1	human	genbank	58_37c	+1	model	splice_site	c.1165-1	e10-1	1.000	-	-	-	pseudogene
LST-3TM12	0	genome.wustl.edu	37	12	21207557	21207557	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	12	21207557	21207557	G	A	SNP	LST-3TM12	NM_001009562.4	human	genbank	58_37c	+1	validated	missense	c.1528	p.V510M	0.005	HMMPfam_OATP,superfamily_MFS general substrate transporter	HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors	-	no_errors
MAGEE1	0	genome.wustl.edu	37	X	75649889	75649890	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	X	75649889	75649890	TA	-	DEL	MAGEE1	NM_020932.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1566_1567	p.K523fs	0.022:0.119	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MED12	0	genome.wustl.edu	37	X	70357654	70357654	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	X	70357654	70357654	T	C	SNP	MED12	NM_005120.2	human	genbank	58_37c	+1	reviewed	missense	c.5905	p.S1969P	1.000	NULL	HMMPfam_Med12	-	no_errors
NEBL	0	genome.wustl.edu	37	10	21177025	21177025	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	10	21177025	21177025	C	A	SNP	NEBL	NM_006393.2	human	genbank	58_37c	-1	reviewed	splice_site	c.369+1	e4+1	1.000	-	-	-	no_errors
NFYC	0	genome.wustl.edu	37	1	41236337	41236337	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	41236337	41236337	C	T	SNP	NFYC	ENST00000308733	human	ensembl	58_37c	+1	known	missense	c.1214	p.P405L	0.996	NULL	HMMPfam_CBFD_NFYB_HMF,superfamily_Histone-fold	-	no_errors
NIPAL3	0	genome.wustl.edu	37	1	24768672	24768672	+	Missense_Mutation	SNP	C	C	T	rs150713534	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	24768672	24768672	C	T	SNP	NIPAL3	NM_020448.4	human	genbank	58_37c	+1	validated	missense	c.290	p.A97V	0.999	HMMPfam_DUF803	HMMPfam_DUF803	-	no_errors
NPFFR2	0	genome.wustl.edu	37	4	73013422	73013422	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	4	73013422	73013422	C	G	SNP	NPFFR2	NM_004885.2	human	genbank	58_37c	+1	reviewed	missense	c.1462	p.Q488E	0.012	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
NPHP4	0	genome.wustl.edu	37	1	5940238	5940238	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	5940238	5940238	G	A	SNP	NPHP4	NM_015102.2	human	genbank	58_37c	-1	reviewed	silent	c.2547	p.V849	1.000	NULL	NULL	-	no_errors
NR1H2	0	genome.wustl.edu	37	19	50881822	50881823	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	19	50881822	50881823	-	CAG	INS	NR1H2	NM_007121.4	human	genbank	58_37c	+1	validated	in_frame_ins	c.516_517	p.175in_frame_insQ	0.999:1.000	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
OR10H4	0	genome.wustl.edu	37	19	16060202	16060202	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	19	16060202	16060202	C	A	SNP	OR10H4	NM_001004465.1	human	genbank	58_37c	+1	validated	missense	c.385	p.H129N	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR6P1	0	genome.wustl.edu	37	1	158532878	158532878	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	158532878	158532878	T	A	SNP	OR6P1	ENST00000334632	human	ensembl	58_37c	-1	known	missense	c.517	p.I173F	0.003	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PABPC3	0	genome.wustl.edu	37	13	25671097	25671098	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	13	25671097	25671098	-	T	INS	PABPC3	NM_030979.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.761_762	p.K254fs	1.000:1.000	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_PABP,HMMSmart_SM00517,superfamily_PABC (PABP) domain,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
PDE3B	0	genome.wustl.edu	37	11	14854289	14854289	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	11	14854289	14854289	G	C	SNP	PDE3B	NM_000922.3	human	genbank	58_37c	+1	validated	missense	c.2116	p.D706H	1.000	superfamily_HD-domain/PDEase-like	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like	-	no_errors
PEX11G	0	genome.wustl.edu	37	19	7550870	7550870	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	19	7550870	7550870	G	T	SNP	PEX11G	NM_080662.2	human	genbank	58_37c	-1	provisional	missense	c.103	p.L35M	0.979	HMMPfam_PEX11	HMMPfam_PEX11	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	3	178938934	178938934	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.2176	p.E726K	1.000	superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178951957	178951957	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	3	178951957	178951957	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3012	p.M1004I	1.000	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PKD1L1	0	genome.wustl.edu	37	7	47925506	47925506	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	7	47925506	47925506	C	T	SNP	PKD1L1	NM_138295.2	human	genbank	58_37c	-1	reviewed	missense	c.2983	p.V995M	0.000	NULL	HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel	-	no_errors
PKN2	0	genome.wustl.edu	37	1	89294223	89294223	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	89294223	89294223	G	C	SNP	PKN2	NM_006256.2	human	genbank	58_37c	+1	validated	missense	c.2479	p.E827Q	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_C2,HMMPfam_HR1,HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_C2_CaLB,superfamily_Kinase_like,HMMSmart_Hr1,superfamily_PKN_effector,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
PLEK2	0	genome.wustl.edu	37	14	67864511	67864511	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	14	67864511	67864511	C	A	SNP	PLEK2	NM_016445.1	human	genbank	58_37c	-1	provisional	missense	c.75	p.W25C	1.000	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_DEP,HMMSmart_DEP,HMMPfam_PH,HMMSmart_PH,superfamily_SSF46785,superfamily_SSF50729	-	no_errors
PLEKHM1	0	genome.wustl.edu	37	17	43516865	43516865	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	43516865	43516865	A	C	SNP	PLEKHM1	NM_014798.2	human	genbank	58_37c	-1	reviewed	missense	c.3037	p.F1013V	1.000	HMMSmart_C1	HMMPfam_PH,HMMSmart_PH,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_RUN,HMMSmart_RUN,superfamily_SSF50729	-	no_errors
PMFBP1	0	genome.wustl.edu	37	16	72157496	72157496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	16	72157496	72157496	C	T	SNP	PMFBP1	NM_031293.2	human	genbank	58_37c	-1	validated	missense	c.2642	p.R881Q	0.946	NULL	NULL	-	no_errors
RAB4A	0	genome.wustl.edu	37	1	229434758	229434758	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	229434758	229434758	G	A	SNP	RAB4A	NM_004578.2	human	genbank	58_37c	+1	provisional	silent	c.480	p.G160	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RAP1GDS1	0	genome.wustl.edu	37	4	99358139	99358139	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	4	99358139	99358139	A	G	SNP	RAP1GDS1	NM_001100426.1	human	genbank	58_37c	+1	validated	missense	c.1619	p.H540R	1.000	superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	-	no_errors
RBMX	0	genome.wustl.edu	37	X	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	X	135960146	135960147	-	AA	INS	RBMX	NM_002139.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RBM1CTR,superfamily_RNA-binding domain RBD	-	no_errors
RETNLB	0	genome.wustl.edu	37	3	108476001	108476002	+	Frame_Shift_Ins	INS	-	-	GG	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	3	108476001	108476002	-	GG	INS	RETNLB	NM_032579.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.32_31	p.L11fs	0.548:0.547	HMMPfam_Resistin	HMMPfam_Resistin,superfamily_Resistin	-	no_errors
SAFB2	0	genome.wustl.edu	37	19	5587279	5587281	+	In_Frame_Del	DEL	TAC	TAC	-	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	TAC	TAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	19	5587279	5587281	TAC	-	DEL	SAFB2	NM_014649.2	human	genbank	58_37c	-1	validated	in_frame_del	c.2837_2835	p.Y946in_frame_del	0.289:0.024:0.007	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,superfamily_SSF68906	-	no_errors
SAMD14	0	genome.wustl.edu	37	17	48191628	48191628	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	48191628	48191628	G	T	SNP	SAMD14	NM_174920.2	human	genbank	58_37c	-1	provisional	missense	c.949	p.P317T	1.000	NULL	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2	-	no_errors
SDSL	0	genome.wustl.edu	37	12	113875830	113875830	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	12	113875830	113875830	C	A	SNP	SDSL	NM_138432.2	human	genbank	58_37c	+1	provisional	missense	c.936	p.N312K	0.990	superfamily_PyrdxlP-dep_enz_bsu	PatternScan_DEHYDRATASE_SER_THR,HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu	-	no_errors
SERINC2	0	genome.wustl.edu	37	1	31905840	31905840	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	1	31905840	31905840	T	G	SNP	SERINC2	NM_178865.3	human	genbank	58_37c	+1	validated	missense	c.1040	p.V347G	1.000	HMMPfam_Serinc	HMMPfam_Serinc	-	no_errors
SLC34A1	0	genome.wustl.edu	37	5	176815139	176815139	+	Silent	SNP	T	T	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	5	176815139	176815139	T	A	SNP	SLC34A1	NM_003052.4	human	genbank	58_37c	+1	reviewed	silent	c.789	p.A263	0.998	HMMPfam_Na_Pi_cotrans	HMMPfam_Na_Pi_cotrans	-	no_errors
SLC36A2	0	genome.wustl.edu	37	5	150704868	150704868	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	5	150704868	150704868	C	T	SNP	SLC36A2	NM_181776.2	human	genbank	58_37c	-1	validated	missense	c.989	p.S330N	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SLFN13	0	genome.wustl.edu	37	17	33768644	33768644	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	33768644	33768644	A	C	SNP	SLFN13	NM_144682.5	human	genbank	58_37c	-1	validated	missense	c.1860	p.F620L	0.850	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_AAA_4,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SMEK2	0	genome.wustl.edu	37	2	55825928	55825928	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	2	55825928	55825928	C	G	SNP	SMEK2	NM_001122964.1	human	genbank	58_37c	-1	validated	missense	c.545	p.C182S	1.000	HMMPfam_DUF625,superfamily_ARM repeat	HMMPfam_DUF625,superfamily_ARM repeat,superfamily_PH domain-like	-	no_errors
SMYD4	0	genome.wustl.edu	37	17	1707930	1707930	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	1707930	1707930	C	T	SNP	SMYD4	NM_052928.2	human	genbank	58_37c	-1	validated	missense	c.359	p.G120D	0.999	superfamily_TPR-like	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,superfamily_TPR-like,superfamily_SET domain	-	no_errors
SREBF1	0	genome.wustl.edu	37	17	17721600	17721600	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	17721600	17721600	C	G	SNP	SREBF1	NM_001005291.2	human	genbank	58_37c	-1	reviewed	missense	c.1247	p.S416T	0.996	superfamily_HLH_basic	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
SSX6	0	genome.wustl.edu	37	X	47969393	47969393	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	X	47969393	47969393	A	G	SNP	SSX6	ENST00000304314	human	ensembl	58_37c	+1	known	silent	c.30	p.R10	0.000	NULL	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SSXRD	-	no_errors
STAM	0	genome.wustl.edu	37	10	17686365	17686365	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	10	17686365	17686365	C	T	SNP	STAM	NM_003473.2	human	genbank	58_37c	+1	reviewed	silent	c.27	p.F9	1.000	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_VHS,HMMPfam_UIM,superfamily_ENTH/VHS domain,HMMSmart_SM00288	-	no_errors
STARD8	0	genome.wustl.edu	37	X	67937723	67937723	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	X	67937723	67937723	G	C	SNP	STARD8	NM_001142503.2	human	genbank	58_37c	+1	reviewed	missense	c.967	p.D323H	0.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,superfamily_Bet v1-like	-	no_errors
STXBP2	0	genome.wustl.edu	37	19	7705019	7705020	+	Splice_Site	DEL	TG	TG	-	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	19	7705019	7705020	TG	-	DEL	STXBP2	ENST00000320400	human	ensembl	58_37c	+1	known	splice_site_del	c.214-2_214-1	e4-1	0.000:0.001	-	-	-	no_start_codon
SYNE1	0	genome.wustl.edu	37	6	152671436	152671436	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	6	152671436	152671436	T	G	SNP	SYNE1	NM_182961.2	human	genbank	58_37c	-1	reviewed	missense	c.11768	p.D3923A	1.000	HMMPfam_Spectrin,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
TAF7L	0	genome.wustl.edu	37	X	100530996	100530996	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	X	100530996	100530996	T	A	SNP	TAF7L	NM_024885.3	human	genbank	58_37c	-1	reviewed	missense	c.1276	p.T426S	0.448	NULL	HMMPfam_TAFII55_N	-	no_errors
TAZ	0	genome.wustl.edu	37	X	153642519	153642519	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	X	153642519	153642519	G	A	SNP	TAZ	NM_000116.3	human	genbank	58_37c	+1	reviewed	missense	c.452	p.R151K	0.007	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase	-	no_errors
TLN2	0	genome.wustl.edu	37	15	63097800	63097800	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	15	63097800	63097800	T	G	SNP	TLN2	NM_015059.2	human	genbank	58_37c	+1	reviewed	missense	c.6479	p.V2160G	1.000	NULL	HMMPfam_I_LWEQ,HMMSmart_ILWEQ,HMMPfam_VBS,HMMPfam_Talin_middle,superfamily_Talin_cent,HMMPfam_FERM_N,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF109885,superfamily_SSF50729	-	no_errors
TMEM170A	0	genome.wustl.edu	37	16	75485730	75485730	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	16	75485730	75485730	C	T	SNP	TMEM170A	NM_145254.1	human	genbank	58_37c	-1	provisional	nonsense	c.141	p.W47*	1.000	HMMPfam_Tmemb_170	HMMPfam_Tmemb_170	-	no_errors
TSG101	0	genome.wustl.edu	37	11	18503243	18503243	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	11	18503243	18503243	T	C	SNP	TSG101	NM_006292.2	human	genbank	58_37c	-1	reviewed	silent	c.1017	p.E339	1.000	HMMPfam_Vps23_core	HMMSmart_SM00212,HMMPfam_UEV,superfamily_UBC-like,HMMPfam_Vps23_core	-	no_errors
VAV2	0	genome.wustl.edu	37	9	136649470	136649470	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	9	136649470	136649470	T	G	SNP	VAV2	NM_001134398.1	human	genbank	58_37c	-1	reviewed	missense	c.1603	p.T535P	1.000	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_SH2,HMMSmart_SM00252,PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_SH3_2,superfamily_Calponin-homology domain CH-domain,superfamily_PH domain-like,superfamily_SH2 domain,superfamily_Cysteine-rich domain	-	no_errors
WDFY4	0	genome.wustl.edu	37	10	50036827	50036827	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	10	50036827	50036827	C	G	SNP	WDFY4	NM_020945.1	human	genbank	58_37c	+1	validated	missense	c.6226	p.P2076A	1.000	NULL	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
WDR93	0	genome.wustl.edu	37	15	90270408	90270408	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	15	90270408	90270408	C	A	SNP	WDR93	NM_020212.1	human	genbank	58_37c	+1	provisional	missense	c.901	p.L301M	0.976	NULL	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,PatternScan_WD_REPEATS_1	-	no_errors
XCR1	0	genome.wustl.edu	37	3	46063167	46063167	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	3	46063167	46063167	G	A	SNP	XCR1	NM_001024644.1	human	genbank	58_37c	-1	reviewed	silent	c.273	p.Y91	0.085	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
ZFP91	0	genome.wustl.edu	37	11	58384907	58384907	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	11	58384907	58384907	G	A	SNP	ZFP91	NM_053023.3	human	genbank	58_37c	+1	reviewed	missense	c.1441	p.E481K	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF624	0	genome.wustl.edu	37	17	16526967	16526967	+	Missense_Mutation	SNP	A	A	T	rs147992031	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	17	16526967	16526967	A	T	SNP	ZNF624	NM_020787.2	human	genbank	58_37c	-1	validated	missense	c.1233	p.N411K	0.995	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF790	0	genome.wustl.edu	37	19	37309690	37309690	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JD-01A-11D-A13L-09	TCGA-D8-A1JD-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7df92725-fa63-494d-af9d-65c6ed76e023	c27dea12-3973-44a8-b150-da7a22ff80e3	19	37309690	37309690	G	A	SNP	ZNF790	NM_206894.2	human	genbank	58_37c	-1	validated	missense	c.1556	p.S519L	0.024	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
