Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA13	0	genome.wustl.edu	37	7	48450174	48450174	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	7	48450174	48450174	G	A	SNP	ABCA13	NM_152701.3	human	genbank	58_37c	+1	reviewed	missense	c.12128	p.R4043H	0.469	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431.1	human	genbank	58_37c	-1	reviewed	missense	c.49	p.E17K	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like	-	no_errors
APBA3	0	genome.wustl.edu	37	19	3753892	3753892	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	19	3753892	3753892	G	A	SNP	APBA3	NM_004886.3	human	genbank	58_37c	-1	reviewed	silent	c.882	p.I294	1.000	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729	-	no_errors
C2orf78	0	genome.wustl.edu	37	2	74043504	74043504	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	2	74043504	74043504	G	T	SNP	C2orf78	NM_001080474.1	human	genbank	58_37c	+1	predicted	missense	c.2154	p.L718F	0.779	NULL	NULL	-	no_errors
CAST	0	genome.wustl.edu	37	5	96100942	96100942	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	5	96100942	96100942	C	T	SNP	CAST	ENST00000510500	human	ensembl	58_37c	+1	known	nonsense	c.970	p.R324*	0.006	HMMPfam_Calpain_inhib	HMMPfam_Calpain_inhib	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CDH1	0	genome.wustl.edu	37	16	68844223	68844232	+	Frame_Shift_Del	DEL	GTCATGGAAG	GTCATGGAAG	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	GTCATGGAAG	GTCATGGAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	16	68844223	68844232	GTCATGGAAG	-	DEL	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.811_820	p.M272fs	0.931:0.931:0.020:0.002:0.005:0.033:0.999:1.000:0.981:0.981	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CT47B1	0	genome.wustl.edu	37	X	120008797	120008823	+	In_Frame_Del	DEL	TCCTCTGTGGCCTCCTCTGTGAGCTTC	TCCTCTGTGGCCTCCTCTGTGAGCTTC	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	TCCTCTGTGGCCTCCTCTGTGAGCTTC	TCCTCTGTGGCCTCCTCTGTGAGCTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	X	120008797	120008823	TCCTCTGTGGCCTCCTCTGTGAGCTTC	-	DEL	CT47B1	NM_001145718.1	human	genbank	58_37c	-1	validated	in_frame_del	c.728_702	p.KLTEEATEE235in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.002	NULL	NULL	-	no_errors
ENSG00000173213	0	genome.wustl.edu	37	18	48399	48399	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	18	48399	48399	C	A	SNP	ENSG00000173213	ENST00000308911	human	ensembl	58_37c	-1	known	missense	c.326	p.G109V	1.000	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ	HMMPfam_Tubulin,superfamily_Tub_FtsZ_C,PatternScan_TUBULIN_B_AUTOREG,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin_FtsZ	-	no_errors
ENSG00000197735	0	genome.wustl.edu	37	10	134237230	134237231	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	10	134237230	134237231	GC	-	DEL	ENSG00000197735	ENST00000354756	human	ensembl	58_37c	-1	known	frame_shift_del	c.411_410	p.S137fs	0.463:0.449	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000251705	0	genome.wustl.edu	37	Y	10037842	10037842	+	RNA	SNP	A	A	G	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	Y	10037842	10037842	A	G	SNP	ENSG00000251705	ENST00000515896	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
FAM47C	0	genome.wustl.edu	37	X	37027408	37027408	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	X	37027408	37027408	G	C	SNP	FAM47C	NM_001013736.2	human	genbank	58_37c	+1	validated	missense	c.925	p.E309Q	0.940	NULL	NULL	-	no_errors
FIP1L1	0	genome.wustl.edu	37	4	54319248	54319249	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	4	54319248	54319249	AG	-	DEL	FIP1L1	NM_030917.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1447_1448	p.E486fs	0.975:0.991	NULL	HMMPfam_Fip1	-	no_errors
GAGE8	0	genome.wustl.edu	37	X	49208295	49208296	+	In_Frame_Ins	INS	-	-	TAT	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	X	49208295	49208296	-	TAT	INS	GAGE8	NM_012196.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.24_25	p.9in_frame_insY	0.002:0.002	HMMPfam_GAGE	HMMPfam_GAGE	-	no_errors
GHRLOS	0	genome.wustl.edu	37	3	10334482	10334482	+	RNA	SNP	C	C	A	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	3	10334482	10334482	C	A	SNP	GHRLOS	NR_004431.2	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.001	-	-	-	no_errors
GNRH2	0	genome.wustl.edu	37	20	3026345	3026346	+	Frame_Shift_Ins	INS	-	-	GCCCC	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	20	3026345	3026346	-	GCCCC	INS	GNRH2	NM_001501.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.326_327	p.P113fs	0.010:0.024	NULL	HMMPfam_GnRH,PatternScan_GNRH	-	no_errors
GOLGA8DP	0	genome.wustl.edu	37	15	22709918	22709918	+	Silent	SNP	C	T	T	rs79059912	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	15	22709918	22709918	C	T	SNP	GOLGA8DP	ENST00000341390	human	ensembl	58_37c	-1	known	silent	c.165	p.S55	0.015	NULL	NULL	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168377119	168377119	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	6	168377119	168377119	T	C	SNP	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	missense	c.214	p.M72V	0.765	NULL	NULL	-	no_errors
IL9R	0	genome.wustl.edu	37	X	155239799	155239801	+	In_Frame_Del	DEL	AGC	AGC	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	X	155239799	155239801	AGC	-	DEL	IL9R	NM_002186.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1291_1293	p.S434in_frame_del	0.000:0.001:0.001	NULL	PatternScan_HEMATOPO_REC_S_F1,superfamily_FN_III-like	-	no_errors
KLK13	0	genome.wustl.edu	37	19	51563756	51563756	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	19	51563756	51563756	C	T	SNP	KLK13	NM_015596.1	human	genbank	58_37c	-1	reviewed	missense	c.173	p.R58Q	0.989	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
KRTAP9-9	0	genome.wustl.edu	37	17	39411670	39411671	+	In_Frame_Ins	INS	-	-	ACCTGCTGCAGGACC	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	17	39411670	39411671	-	ACCTGCTGCAGGACC	INS	KRTAP9-9	NM_030975.2	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.33_34	p.15in_frame_insTTCCR	0.053:0.940	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LOC100131754	0	genome.wustl.edu	37	1	565286	565286	+	RNA	SNP	C	T	T	rs140432825	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	1	565286	565286	C	T	SNP	LOC100131754	XR_078214.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC283685	0	genome.wustl.edu	37	15	23685826	23685828	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	15	23685826	23685828	TCT	-	DEL	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	in_frame_del	c.1585_1583	p.K528in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors
LOC391769	0	genome.wustl.edu	37	5	17655423	17655423	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	5	17655423	17655423	G	A	SNP	LOC391769	XM_373079.1	human	genbank	58_37c	-1	model	silent	c.225	p.I75	1.000	HMMSmart_SM00428,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00428,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold	-	pseudogene
LOC642236	0	genome.wustl.edu	37	9	68438558	68438560	+	RNA	DEL	CTT	CTT	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	9	68438558	68438560	CTT	-	DEL	LOC642236	XR_041085.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000:1.000:1.000	-	-	-	no_errors
MST1P9	0	genome.wustl.edu	37	1	17086940	17086941	+	RNA	DEL	AC	AC	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	1	17086940	17086941	AC	-	DEL	MST1P9	NR_002729.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.998:1.000	-	-	-	pseudogene
MTMR4	0	genome.wustl.edu	37	17	56582889	56582889	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	17	56582889	56582889	G	T	SNP	MTMR4	NM_004687.4	human	genbank	58_37c	-1	validated	silent	c.1047	p.I349	1.000	superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_Myotub-related,superfamily_FYVE/PHD zinc finger,PatternScan_TYR_PHOSPHATASE_1,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
MUC2	0	genome.wustl.edu	37	11	1092619	1092620	+	In_Frame_Ins	INS	-	-	CAA	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	11	1092619	1092620	-	CAA	INS	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.4438_4439	p.1484in_frame_insT	0.008:0.067	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
MUC6	0	genome.wustl.edu	37	11	1018316	1018316	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	11	1018316	1018316	G	A	SNP	MUC6	NM_005961.2	human	genbank	58_37c	-1	validated	silent	c.4485	p.S1495	0.053	NULL	HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,HMMSmart_SM00215,HMMPfam_C8,HMMPfam_TIL	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16912164	16912164	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	1	16912164	16912164	C	T	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	missense	c.808	p.V270I	0.093	NULL	HMMPfam_DUF1220	-	no_errors
NCOA6	0	genome.wustl.edu	37	20	33328692	33328692	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	20	33328692	33328692	T	C	SNP	NCOA6	NM_014071.2	human	genbank	58_37c	-1	reviewed	missense	c.5368	p.T1790A	0.948	NULL	NULL	-	no_errors
NLRP3	0	genome.wustl.edu	37	1	247582326	247582326	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	1	247582326	247582326	C	T	SNP	NLRP3	NM_001079821.2	human	genbank	58_37c	+1	reviewed	missense	c.230	p.A77V	0.003	HMMPfam_PAAD_DAPIN,superfamily_DEATH_like	HMMPfam_LRR_1,HMMSmart_LRR_RI,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047	-	no_errors
PAFAH1B1	0	genome.wustl.edu	37	17	2573487	2573487	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	17	2573487	2573487	C	T	SNP	PAFAH1B1	NM_000430.3	human	genbank	58_37c	+1	reviewed	nonsense	c.430	p.R144*	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,HMMSmart_SM00667,superfamily_WD40 repeat-like,HMMPfam_LisH,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_Lissencephaly-1 protein (Lis-1 PAF-AH alpha) N-terminal domain	-	no_errors
PCDHGB4	0	genome.wustl.edu	37	5	140769310	140769310	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	5	140769310	140769310	G	A	SNP	PCDHGB4	NM_003736.2	human	genbank	58_37c	+1	reviewed	missense	c.1859	p.R620H	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PDZD2	0	genome.wustl.edu	37	5	32088636	32088636	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	5	32088636	32088636	A	C	SNP	PDZD2	NM_178140.2	human	genbank	58_37c	+1	reviewed	missense	c.5082	p.E1694D	0.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
PLCZ1	0	genome.wustl.edu	37	12	18854541	18854552	+	In_Frame_Del	DEL	TCCTCCTCCTCC	TCCTCCTCCTCC	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	TCCTCCTCCTCC	TCCTCCTCCTCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	12	18854541	18854552	TCCTCCTCCTCC	-	DEL	PLCZ1	ENST00000447925	human	ensembl	58_37c	-1	known	in_frame_del	c.257_246	p.EEEE82in_frame_del	0.019:0.025:0.029:0.032:0.034:0.034:0.032:0.029:0.024:0.025:0.024:0.021	superfamily_PLC-like_Pdiesterase_TIM-brl	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors
PLK2	0	genome.wustl.edu	37	5	57751415	57751415	+	Missense_Mutation	SNP	C	C	G	rs140637834	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	5	57751415	57751415	C	G	SNP	PLK2	NM_006622.2	human	genbank	58_37c	-1	validated	missense	c.1576	p.G526R	1.000	HMMPfam_POLO_box,superfamily_SSF82615	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_POLO_box,superfamily_SSF82615	-	no_errors
PTH2	0	genome.wustl.edu	37	19	49926531	49926533	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	19	49926531	49926533	CAG	-	DEL	PTH2	NM_178449.3	human	genbank	58_37c	-1	validated	in_frame_del	c.66_64	p.L22in_frame_del	0.016:0.132:0.132	NULL	NULL	-	no_errors
RBM5	0	genome.wustl.edu	37	3	50155888	50155889	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	3	50155888	50155889	GA	-	DEL	RBM5	NM_005778.1	human	genbank	58_37c	+1	provisional	frame_shift_del	c.2447_2448	p.*816fs	1.000:0.999	NULL	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_RNA-binding domain RBD	-	no_errors
RRP12	0	genome.wustl.edu	37	10	99132555	99132555	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	10	99132555	99132555	C	T	SNP	RRP12	NM_015179.3	human	genbank	58_37c	-1	validated	silent	c.2187	p.V729	1.000	superfamily_ARM repeat	HMMPfam_NUC173,superfamily_ARM repeat	-	no_errors
SEPT12	0	genome.wustl.edu	37	16	4829725	4829725	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	16	4829725	4829725	G	A	SNP	SEPT12	NM_144605.3	human	genbank	58_37c	-1	validated	silent	c.789	p.V263	0.995	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SERPINE1	0	genome.wustl.edu	37	7	100771746	100771746	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	7	100771746	100771746	G	T	SNP	SERPINE1	NM_000602.3	human	genbank	58_37c	+1	reviewed	silent	c.72	p.V24	0.000	NULL	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SETD2	0	genome.wustl.edu	37	3	47098494	47098495	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	3	47098494	47098495	-	T	INS	SETD2	NM_014159.6	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.6780_6779	p.A2261fs	0.162:0.992	NULL	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508,HMMSmart_SM00570,superfamily_Ferritin-like,HMMPfam_SRI_2,PatternScan_ADH_IRON_1,superfamily_SET domain	-	no_errors
SETD2	0	genome.wustl.edu	37	3	47098494	47098498	+	Frame_Shift_Del	DEL	CGGCA	CGGCA	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	CGGCA	CGGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	3	47098494	47098498	CGGCA	-	DEL	SETD2	NM_014159.6	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.6780_6776	p.V2259fs	0.162:0.992:0.998:0.996:1.000	NULL	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508,HMMSmart_SM00570,superfamily_Ferritin-like,HMMPfam_SRI_2,PatternScan_ADH_IRON_1,superfamily_SET domain	-	no_errors
SETD2	0	genome.wustl.edu	37	3	47098502	47098509	+	Frame_Shift_Del	DEL	GCAAGACA	GCAAGACA	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	GCAAGACA	GCAAGACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	3	47098502	47098509	GCAAGACA	-	DEL	SETD2	NM_014159.6	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.6772_6765	p.V2256fs	1.000:1.000:1.000:1.000:0.998:1.000:1.000:0.030	NULL	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508,HMMSmart_SM00570,superfamily_Ferritin-like,HMMPfam_SRI_2,PatternScan_ADH_IRON_1,superfamily_SET domain	-	no_errors
SGSH	0	genome.wustl.edu	37	17	78185893	78185893	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	17	78185893	78185893	C	A	SNP	SGSH	NM_000199.3	human	genbank	58_37c	-1	reviewed	missense	c.926	p.S309I	1.000	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core	HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline_phosphatase_core	-	no_errors
SHANK1	0	genome.wustl.edu	37	19	51165693	51165693	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	19	51165693	51165693	G	A	SNP	SHANK1	NM_016148.2	human	genbank	58_37c	-1	validated	silent	c.6015	p.P2005	0.965	NULL	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_SH3_2	-	no_errors
SYNE2	0	genome.wustl.edu	37	14	64635628	64635628	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	14	64635628	64635628	A	T	SNP	SYNE2	NM_182914.2	human	genbank	58_37c	+1	reviewed	missense	c.16939	p.I5647F	0.987	HMMSmart_SPEC,superfamily_Spectrin	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin	-	no_errors
SYT5	0	genome.wustl.edu	37	19	55687114	55687114	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	19	55687114	55687114	G	A	SNP	SYT5	NM_003180.2	human	genbank	58_37c	-1	validated	missense	c.503	p.T168M	0.991	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
TET3	0	genome.wustl.edu	37	2	74274856	74274873	+	In_Frame_Del	DEL	AAAGCCCATTCAGATCAA	AAAGCCCATTCAGATCAA	-	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	AAAGCCCATTCAGATCAA	AAAGCCCATTCAGATCAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	2	74274856	74274873	AAAGCCCATTCAGATCAA	-	DEL	TET3	NM_144993.1	human	genbank	58_37c	+1	provisional	in_frame_del	c.1407_1424	p.PIQIKK471in_frame_del	0.981:1.000:1.000:1.000:0.988:0.978:0.845:0.846:0.995:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors
THBS4	0	genome.wustl.edu	37	5	79374937	79374937	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	5	79374937	79374937	C	T	SNP	THBS4	NM_003248.4	human	genbank	58_37c	+1	reviewed	silent	c.2367	p.T789	0.278	HMMPfam_TSP_C,superfamily_ConA_like_lec_gl	HMMSmart_EGF_CA,HMMSmart_TSPN,HMMPfam_TSP_3,HMMSmart_EGF,HMMPfam_TSP_C,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF103647,superfamily_SSF57196	-	no_errors
THSD7B	0	genome.wustl.edu	37	2	138033556	138033556	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	2	138033556	138033556	G	A	SNP	THSD7B	NM_001080427.1	human	genbank	58_37c	+1	provisional	silent	c.2367	p.T789	0.219	superfamily_TSP-1 type 1 repeat	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	-	no_errors
ZMYM3	0	genome.wustl.edu	37	X	70464640	70464640	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	X	70464640	70464640	C	T	SNP	ZMYM3	NM_005096.3	human	genbank	58_37c	-1	reviewed	silent	c.3111	p.K1037	1.000	NULL	HMMPfam_zf-FCS,HMMSmart_SM00746	-	no_errors
ZNF483	0	genome.wustl.edu	37	9	114293154	114293154	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-D8-A1X8-01A-11D-A14K-09	TCGA-D8-A1X8-10A-01W-A16I-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	78c3c787-5731-4c38-8d7a-e5b503b11c36	66580041-7e6c-4467-9116-d96049f2ab59	9	114293154	114293154	G	C	SNP	ZNF483	NM_133464.2	human	genbank	58_37c	+1	validated	splice_site	c.413-1	e2-1	0.161	-	-	-	no_errors
