Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTS17	0	genome.wustl.edu	37	15	100672248	100672248	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	15	100672248	100672248	C	T	SNP	ADAMTS17	NM_139057.2	human	genbank	58_37c	-1	reviewed	missense	c.1685	p.G562E	1.000	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMSmart_SM00608,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADAMTS19	0	genome.wustl.edu	37	5	128797315	128797316	+	In_Frame_Ins	INS	-	-	CCCGGC	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	5	128797315	128797316	-	CCCGGC	INS	ADAMTS19	NM_133638.3	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.594_595	p.202in_frame_insPG	0.000:0.016	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMSmart_SM00608,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AKAP9	0	genome.wustl.edu	37	7	91570457	91570457	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	7	91570457	91570457	C	T	SNP	AKAP9	NM_005751.4	human	genbank	58_37c	+1	reviewed	missense	c.44	p.A15V	1.000	NULL	PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil	-	no_errors
ALG8	0	genome.wustl.edu	37	11	77812019	77812019	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	11	77812019	77812019	C	T	SNP	ALG8	NM_024079.4	human	genbank	58_37c	-1	reviewed	silent	c.1572	p.K524	0.994	NULL	HMMPfam_Alg6_Alg8	-	no_errors
ANTXR1	0	genome.wustl.edu	37	2	69472437	69472437	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	2	69472437	69472437	G	A	SNP	ANTXR1	NM_032208.2	human	genbank	58_37c	+1	reviewed	silent	c.1515	p.S505	0.111	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Ant_C,HMMPfam_Anth_Ig,superfamily_vWA-like	-	no_errors
AP3B1	0	genome.wustl.edu	37	5	77511985	77511985	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	5	77511985	77511985	C	T	SNP	AP3B1	NM_003664.3	human	genbank	58_37c	-1	reviewed	missense	c.680	p.R227H	1.000	HMMPfam_Adaptin_N,superfamily_ARM repeat	HMMPfam_Adaptin_N,superfamily_ARM repeat	-	no_errors
ATP13A5	0	genome.wustl.edu	37	3	193068973	193068974	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	3	193068973	193068974	AT	-	DEL	ATP13A5	NM_198505.2	human	genbank	58_37c	-1	provisional	frame_shift_del	c.624_623	p.Y208fs	0.891:0.997	superfamily_SSF81665	HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665	-	no_errors
ATP7B	0	genome.wustl.edu	37	13	52548306	52548306	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	13	52548306	52548306	C	T	SNP	ATP7B	NM_000053.2	human	genbank	58_37c	-1	reviewed	silent	c.1050	p.P350	0.000	NULL	HMMPfam_Hydrolase,HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,HMMPfam_E1-E2_ATPase,PatternScan_HMA_1,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
C1orf173	0	genome.wustl.edu	37	1	75037178	75037178	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	1	75037178	75037178	C	T	SNP	C1orf173	NM_001002912.4	human	genbank	58_37c	-1	validated	missense	c.4216	p.E1406K	0.782	NULL	NULL	-	no_errors
CAMK4	0	genome.wustl.edu	37	5	110679796	110679796	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	5	110679796	110679796	A	C	SNP	CAMK4	NM_001744.3	human	genbank	58_37c	+1	reviewed	missense	c.236	p.K79T	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CDH3	0	genome.wustl.edu	37	16	68732208	68732208	+	Missense_Mutation	SNP	G	G	A	rs144117679	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	16	68732208	68732208	G	A	SNP	CDH3	NM_001793.4	human	genbank	58_37c	+1	reviewed	missense	c.2395	p.A799T	0.621	HMMPfam_Cadherin_C	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
CNTROB	0	genome.wustl.edu	37	17	7847523	7847523	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	17	7847523	7847523	C	T	SNP	CNTROB	ENST00000380262	human	ensembl	58_37c	+1	known	nonsense	c.1528	p.R510*	0.881	NULL	NULL	-	no_errors
DAB2	0	genome.wustl.edu	37	5	39383203	39383203	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	5	39383203	39383203	G	A	SNP	DAB2	NM_001343.2	human	genbank	58_37c	-1	validated	silent	c.858	p.F286	1.000	NULL	PatternScan_PFKB_KINASES_1,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like	-	no_errors
DIP2A	0	genome.wustl.edu	37	21	47918525	47918525	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	21	47918525	47918525	C	G	SNP	DIP2A	NM_015151.3	human	genbank	58_37c	+1	reviewed	missense	c.434	p.S145C	1.000	NULL	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like	-	no_errors
DIP2B	0	genome.wustl.edu	37	12	51112558	51112558	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	12	51112558	51112558	G	T	SNP	DIP2B	NM_173602.2	human	genbank	58_37c	+1	validated	missense	c.2918	p.G973V	1.000	superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like	-	no_errors
EHMT1	0	genome.wustl.edu	37	9	140672412	140672412	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	9	140672412	140672412	G	A	SNP	EHMT1	NM_024757.4	human	genbank	58_37c	+1	reviewed	missense	c.2078	p.R693Q	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000198888	0	genome.wustl.edu	37	MT	3760	3760	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	MT	3760	3760	T	C	SNP	ENSG00000198888	ENST00000361390	human	ensembl	58_37c	+1	known	missense	c.454	p.S152P	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_stop_codon:mismatch_between_exon_seq_and_reference
ENSG00000236291	0	genome.wustl.edu	37	12	133032047	133032048	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	12	133032047	133032048	TG	-	DEL	ENSG00000236291	ENST00000446891	human	ensembl	58_37c	-1	known	frame_shift_del	c.210_209	p.T70fs	0.004:0.091	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000245982	0	genome.wustl.edu	37	16	84600696	84600699	+	RNA	DEL	AGTC	AGTC	-	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	AGTC	AGTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	16	84600696	84600699	AGTC	-	DEL	ENSG00000245982	ENST00000499573	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.001	-	-	-	no_errors
EPDR1	0	genome.wustl.edu	37	7	37960263	37960275	+	Frame_Shift_Del	DEL	AGGCAGTGGCAGC	AGGCAGTGGCAGC	-	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	AGGCAGTGGCAGC	AGGCAGTGGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	7	37960263	37960275	AGGCAGTGGCAGC	-	DEL	EPDR1	NM_017549.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.82_94	p.Q31fs	0.174:0.169:0.163:0.158:0.152:0.146:0.139:0.133:0.126:0.118:0.111:0.103:0.095	NULL	HMMPfam_Ependymin,PatternScan_EPENDYMIN_1,PatternScan_EPENDYMIN_2	-	no_errors
EPHB1	0	genome.wustl.edu	37	3	134825375	134825375	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	3	134825375	134825375	G	A	SNP	EPHB1	ENST00000488154	human	ensembl	58_37c	+1	known	missense	c.557	p.R186H	0.035	HMMSmart_EPH_lbd	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like	-	no_errors
FN1	0	genome.wustl.edu	37	2	216262532	216262532	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	2	216262532	216262532	C	A	SNP	FN1	NM_212482.1	human	genbank	58_37c	-1	reviewed	nonsense	c.3388	p.E1130*	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_fn1,HMMSmart_SM00058,PatternScan_FN1_1,HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_EGF_1,superfamily_Kringle-like,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_Fibronectin type I module	-	no_errors
GUSB	0	genome.wustl.edu	37	7	65439687	65439687	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	7	65439687	65439687	C	T	SNP	GUSB	NM_000181.3	human	genbank	58_37c	-1	reviewed	missense	c.1070	p.R357Q	1.000	HMMPfam_Glyco_hydro_2_C,superfamily_(Trans)glycosidases	PatternScan_GLYCOSYL_HYDROL_F2_2,PatternScan_GLYCOSYL_HYDROL_F2_1,HMMPfam_Glyco_hydro_2,superfamily_beta-Galactosidase/glucuronidase domain,HMMPfam_Glyco_hydro_2_C,HMMPfam_Glyco_hydro_2_N,superfamily_Galactose-binding domain-like,superfamily_(Trans)glycosidases	-	no_errors
HRH1	0	genome.wustl.edu	37	3	11301339	11301339	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	3	11301339	11301339	A	G	SNP	HRH1	NM_000861.3	human	genbank	58_37c	+1	reviewed	missense	c.616	p.M206V	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152189242	152189242	+	Silent	SNP	A	G	G	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	1	152189242	152189242	A	G	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	silent	c.4863	p.S1621	0.190	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
KIAA0649	0	genome.wustl.edu	37	9	138378571	138378571	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	9	138378571	138378571	C	T	SNP	KIAA0649	NM_014811.3	human	genbank	58_37c	+1	validated	missense	c.2215	p.R739W	0.119	NULL	NULL	-	no_errors
KIF26B	0	genome.wustl.edu	37	1	245582982	245582982	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	1	245582982	245582982	G	T	SNP	KIF26B	NM_018012.3	human	genbank	58_37c	+1	provisional	silent	c.1101	p.S367	0.012	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KIR3DL3	0	genome.wustl.edu	37	19	55246750	55246750	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	19	55246750	55246750	G	T	SNP	KIR3DL3	NM_153443.3	human	genbank	58_37c	+1	reviewed	missense	c.980	p.G327V	0.006	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LOC646813	0	genome.wustl.edu	37	11	50379454	50379455	+	RNA	INS	-	-	TTGTTTTGTT	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	11	50379454	50379455	-	TTGTTTTGTT	INS	LOC646813	NR_024504.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
LOC653061	0	genome.wustl.edu	37	15	23609317	23609319	+	In_Frame_Del	DEL	TGG	TGG	-	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	15	23609317	23609319	TGG	-	DEL	LOC653061	XM_002343325.1	human	genbank	58_37c	+1	model	in_frame_del	c.1248_1250	p.G417in_frame_del	0.001:0.004:0.006	NULL	NULL	-	no_errors
LRRC2	0	genome.wustl.edu	37	3	46560544	46560544	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	3	46560544	46560544	G	A	SNP	LRRC2	NM_024512.3	human	genbank	58_37c	-1	validated	missense	c.1076	p.P359L	1.000	NULL	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
MAP2K4	0	genome.wustl.edu	37	17	12032481	12032481	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	17	12032481	12032481	C	G	SNP	MAP2K4	NM_003010.2	human	genbank	58_37c	+1	reviewed	missense	c.917	p.P306R	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MAPK6	0	genome.wustl.edu	37	15	52356190	52356190	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	15	52356190	52356190	G	T	SNP	MAPK6	NM_002748.3	human	genbank	58_37c	+1	reviewed	missense	c.1159	p.D387Y	1.000	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MCCC1	0	genome.wustl.edu	37	3	182810273	182810273	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	3	182810273	182810273	C	T	SNP	MCCC1	NM_020166.3	human	genbank	58_37c	-1	reviewed	missense	c.197	p.R66H	0.997	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like	HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_2,HMMPfam_CPSase_L_chain,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,superfamily_Rudmnt_hyb_motif,superfamily_PreATP-grasp-like,superfamily_SSF56059	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195511523	195511523	+	Missense_Mutation	SNP	C	C	G	rs142766505	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	3	195511523	195511523	C	G	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.6928	p.A2310P	0.376	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NCRNA00164	0	genome.wustl.edu	37	2	133015283	133015283	+	RNA	SNP	G	G	C	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	2	133015283	133015283	G	C	SNP	NCRNA00164	NR_027020.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIPSL	0	genome.wustl.edu	37	10	95718978	95718978	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	10	95718978	95718978	C	T	SNP	PIPSL	NR_002319.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.998	-	-	-	pseudogene
PRSS8	0	genome.wustl.edu	37	16	31143759	31143759	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	16	31143759	31143759	G	A	SNP	PRSS8	NM_002773.3	human	genbank	58_37c	-1	reviewed	silent	c.696	p.D232	0.974	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_SER	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
RIN3	0	genome.wustl.edu	37	14	93043720	93043720	+	Missense_Mutation	SNP	C	C	T	rs144699416	byFrequency	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	14	93043720	93043720	C	T	SNP	RIN3	NM_024832.3	human	genbank	58_37c	+1	validated	missense	c.265	p.R89W	0.675	HMMSmart_SM00252,superfamily_SH2 domain	HMMSmart_SM00252,HMMPfam_VPS9,HMMSmart_SM00167,superfamily_VPS9 domain (Pfam 02204),superfamily_SH2 domain	-	no_errors
SCN9A	0	genome.wustl.edu	37	2	167055875	167055875	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	2	167055875	167055875	G	A	SNP	SCN9A	NM_002977.3	human	genbank	58_37c	-1	reviewed	silent	c.5241	p.V1747	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SERPING1	0	genome.wustl.edu	37	11	57367733	57367733	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	11	57367733	57367733	G	A	SNP	SERPING1	NM_000062.2	human	genbank	58_37c	+1	reviewed	missense	c.433	p.A145T	0.399	HMMPfam_Serpin,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SHANK1	0	genome.wustl.edu	37	19	51217199	51217199	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	19	51217199	51217199	G	T	SNP	SHANK1	NM_016148.2	human	genbank	58_37c	-1	validated	silent	c.648	p.P216	0.888	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_SH3_2	-	no_errors
SLC35A2	0	genome.wustl.edu	37	X	48761929	48761929	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	X	48761929	48761929	G	A	SNP	SLC35A2	NM_001032289.1	human	genbank	58_37c	-1	provisional	missense	c.667	p.R223C	0.000	NULL	HMMPfam_Nuc_sug_transp	-	no_errors
SPHKAP	0	genome.wustl.edu	37	2	228881454	228881454	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	2	228881454	228881454	C	A	SNP	SPHKAP	NM_001142644.1	human	genbank	58_37c	-1	validated	missense	c.4116	p.R1372S	0.022	NULL	HMMPfam_AKAP_110	-	no_errors
SPTB	0	genome.wustl.edu	37	14	65239968	65239968	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	14	65239968	65239968	C	T	SNP	SPTB	NM_001024858.2	human	genbank	58_37c	-1	reviewed	silent	c.5148	p.P1716	0.384	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_Spectrin,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF50729	-	no_errors
TBC1D9B	0	genome.wustl.edu	37	5	179294569	179294569	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	5	179294569	179294569	A	G	SNP	TBC1D9B	ENST00000444477	human	ensembl	58_37c	-1	known	silent	c.600	p.S200	0.156	NULL	HMMPfam_efhand,superfamily_SSF47473	-	no_errors
UEVLD	0	genome.wustl.edu	37	11	18566328	18566328	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	11	18566328	18566328	T	C	SNP	UEVLD	NM_001040697.1	human	genbank	58_37c	-1	validated	missense	c.902	p.Y301C	0.971	HMMPfam_Ldh_1_N,superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_Ldh_1_N,HMMPfam_Ldh_1_C,HMMPfam_UEV,superfamily_LDH C-terminal domain-like,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_UBC-like	-	no_errors
UGT8	0	genome.wustl.edu	37	4	115586882	115586883	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	4	115586882	115586883	AT	-	DEL	UGT8	NM_001128174.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.1012_1013	p.I338fs	0.998:1.000	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
USP34	0	genome.wustl.edu	37	2	61416190	61416190	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	2	61416190	61416190	G	C	SNP	USP34	ENST00000411912	human	ensembl	58_37c	-1	known	missense	c.2917	p.R973G	0.998	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
VSIG10L	0	genome.wustl.edu	37	19	51837454	51837454	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	19	51837454	51837454	G	A	SNP	VSIG10L	ENST00000335624	human	ensembl	58_37c	-1	known	missense	c.1075	p.R359C	0.026	NULL	superfamily_Immunoglobulin	-	no_start_codon
YJEFN3	0	genome.wustl.edu	37	19	19645891	19645891	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	19	19645891	19645891	G	A	SNP	YJEFN3	NM_198537.2	human	genbank	58_37c	+1	validated	missense	c.367	p.V123M	0.962	HMMPfam_YjeF_N,superfamily_YjeF N-terminal domain-like	HMMPfam_YjeF_N,superfamily_YjeF N-terminal domain-like	-	no_errors
ZNF10	0	genome.wustl.edu	37	12	133733005	133733005	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1XY-01A-11D-A14K-09	TCGA-D8-A1XY-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edb6d161-8f50-4c11-8246-487c4ea9a55d	8dea96d9-5017-4872-a84e-33bfd2f37b7a	12	133733005	133733005	T	G	SNP	ZNF10	NM_015394.4	human	genbank	58_37c	+1	reviewed	missense	c.1173	p.H391Q	0.400	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
