Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ANKRD34C	390616	genome.wustl.edu	37	15	79586581	79586581	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	15	79586581	79586581	A	-	DEL	ANKRD34C	XM_002343327.1	human	genbank	58_37c	+1	model	frame_shift_del	c.955	p.K319fs	0.811	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ANKRD52	0	genome.wustl.edu	37	12	56651611	56651611	+	Splice_Site	DEL	C	C	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	12	56651611	56651611	C	-	DEL	ANKRD52	NM_173595.3	human	genbank	58_37c	-1	validated	splice_site_del	c.111+1	e2+1	1.000	-	-	-	no_errors
BCL9L	283149	genome.wustl.edu	37	11	118769652	118769652	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	118769652	118769652	G	-	DEL	BCL9L	NM_182557.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.3972	p.F1324fs	0.993	NULL	PatternScan_RIBOSOMAL_S6E	-	no_errors
C12orf51	283450	genome.wustl.edu	37	12	112657218	112657218	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	12	112657218	112657218	G	-	DEL	C12orf51	NM_001109662.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.5780	p.P1927fs	1.000	NULL	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	-	no_errors
C17orf68	80169	genome.wustl.edu	37	17	8138378	8138378	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	17	8138378	8138378	C	-	DEL	C17orf68	NM_025099.5	human	genbank	58_37c	-1	validated	frame_shift_del	c.1432	p.A478fs	0.871	NULL	NULL	-	no_errors
COL5A1	1289	genome.wustl.edu	37	9	137687132	137687132	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	9	137687132	137687132	C	T	SNP	COL5A1	NM_000093.3	human	genbank	58_37c	+1	reviewed	missense	c.2770	p.R924W	0.985	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_COLFI,HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2	-	no_errors
CTCF	10664	genome.wustl.edu	37	16	67670628	67670628	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	16	67670628	67670628	G	T	SNP	CTCF	NM_006565.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1873	p.E625*	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
DAB2IP	153090	genome.wustl.edu	37	9	124522318	124522318	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	9	124522318	124522318	G	A	SNP	DAB2IP	NM_032552.2	human	genbank	58_37c	+1	validated	missense	c.686	p.G229D	1.000	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like	-	no_errors
DRD3	1814	genome.wustl.edu	37	3	113890710	113890710	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	3	113890710	113890710	C	T	SNP	DRD3	NM_000796.3	human	genbank	58_37c	-1	reviewed	missense	c.130	p.V44I	0.481	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
EFHA2	286097	genome.wustl.edu	37	8	16944521	16944521	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	8	16944521	16944521	G	C	SNP	EFHA2	NM_181723.2	human	genbank	58_37c	+1	validated	missense	c.826	p.D276H	1.000	superfamily_SSF47473	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
EIF2C1	26523	genome.wustl.edu	37	1	36359982	36359982	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	36359982	36359982	G	A	SNP	EIF2C1	NM_012199.2	human	genbank	58_37c	+1	reviewed	missense	c.851	p.R284H	1.000	HMMPfam_PAZ,superfamily_PAZ domain	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,HMMPfam_DUF1785,superfamily_PAZ domain	-	no_errors
ENSG00000186921	0	genome.wustl.edu	37	7	158415438	158415438	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	7	158415438	158415438	A	C	SNP	ENSG00000186921	ENST00000335132	human	ensembl	58_37c	-1	known	missense	c.234	p.N78K	0.837	NULL	NULL	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2658	2658	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	MT	2658	2658	T	C	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000247765	0	genome.wustl.edu	37	15	21941476	21941476	+	RNA	SNP	T	T	A	rs4603520	byCluster;byFrequency;by2Hit2Allele;byHapmap	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	15	21941476	21941476	T	A	SNP	ENSG00000247765	ENST00000500487	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors
EXTL3	2137	genome.wustl.edu	37	8	28595139	28595139	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	8	28595139	28595139	G	C	SNP	EXTL3	NM_001440.2	human	genbank	58_37c	+1	provisional	missense	c.2380	p.E794Q	1.000	HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Exostosin,HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
FAM83G	644815	genome.wustl.edu	37	17	18891586	18891586	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	17	18891586	18891586	C	-	DEL	FAM83G	NM_001039999.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.664	p.A222fs	1.000	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease	-	no_errors
FANCD2	2177	genome.wustl.edu	37	3	10106486	10106486	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	3	10106486	10106486	C	T	SNP	FANCD2	NM_033084.3	human	genbank	58_37c	+1	reviewed	missense	c.2095	p.L699F	1.000	NULL	NULL	-	no_errors
FMN2	56776	genome.wustl.edu	37	1	240374531	240374531	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	240374531	240374531	A	G	SNP	FMN2	NM_020066.4	human	genbank	58_37c	+1	validated	missense	c.4061	p.K1354R	1.000	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd	HMMSmart_FH2,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
FRY	10129	genome.wustl.edu	37	13	32869412	32869412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	13	32869412	32869412	C	T	SNP	FRY	NM_023037.2	human	genbank	58_37c	+1	validated	missense	c.8857	p.R2953C	1.000	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
GALNT11	63917	genome.wustl.edu	37	7	151807732	151807732	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	7	151807732	151807732	T	A	SNP	GALNT11	NM_022087.2	human	genbank	58_37c	+1	validated	splice_site	c.1080+2	e6+2	1.000	-	-	-	no_errors
GUCY2F	2986	genome.wustl.edu	37	X	108718516	108718516	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	X	108718516	108718516	C	A	SNP	GUCY2F	NM_001522.2	human	genbank	58_37c	-1	reviewed	missense	c.650	p.G217V	1.000	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_ANF_receptor,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_GUANYLATE_CYCLASE_1,superfamily_Periplasmic binding protein-like I	-	no_errors
HAS3	3038	genome.wustl.edu	37	16	69148464	69148464	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	16	69148464	69148464	C	-	DEL	HAS3	NM_005329.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.957	p.L320fs	1.000	superfamily_SSF53448	HMMPfam_Glycos_transf_2,superfamily_SSF53448	-	no_errors
HYOU1	10525	genome.wustl.edu	37	11	118925916	118925916	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	118925916	118925916	C	A	SNP	HYOU1	NM_001130991.1	human	genbank	58_37c	-1	reviewed	missense	c.400	p.V134L	0.999	HMMPfam_HSP70,superfamily_Actin-like ATPase domain	HMMPfam_HSP70,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain,superfamily_Actin-like ATPase domain	-	no_errors
INPP4B	8821	genome.wustl.edu	37	4	143226676	143226676	+	Silent	SNP	G	G	A	rs149685320	byCluster;byFrequency;by1000genomes	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	4	143226676	143226676	G	A	SNP	INPP4B	NM_001101669.1	human	genbank	58_37c	-1	reviewed	silent	c.438	p.G146	0.998	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
KIAA0922	23240	genome.wustl.edu	37	4	154471282	154471282	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	4	154471282	154471282	T	C	SNP	KIAA0922	NM_015196.3	human	genbank	58_37c	+1	validated	silent	c.297	p.D99	1.000	NULL	NULL	-	no_errors
LIF	3976	genome.wustl.edu	37	22	30639826	30639826	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	22	30639826	30639826	G	A	SNP	LIF	ENST00000403987	human	ensembl	58_37c	-1	known	nonsense	c.244	p.R82*	0.000	NULL	NULL	-	no_errors
MADD	8567	genome.wustl.edu	37	11	47303974	47303974	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	47303974	47303974	G	-	DEL	MADD	NM_003682.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1512	p.G505fs	1.000	HMMPfam_dDENN,HMMSmart_SM00801	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800	-	no_errors
MUC17	140453	genome.wustl.edu	37	7	100696339	100696339	+	Silent	SNP	C	C	T	rs141631949	byCluster;byFrequency;by1000genomes	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	7	100696339	100696339	C	T	SNP	MUC17	NM_001040105.1	human	genbank	58_37c	+1	provisional	silent	c.13176	p.Y4392	0.038	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
NFATC2	4773	genome.wustl.edu	37	20	50048860	50048860	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	20	50048860	50048860	G	A	SNP	NFATC2	NM_173091.2	human	genbank	58_37c	-1	reviewed	silent	c.2466	p.C822	0.944	NULL	HMMPfam_TIG,HMMSmart_SM00429,superfamily_p53-like transcription factors,HMMPfam_RHD,superfamily_E set domains	-	no_errors
NTM	50863	genome.wustl.edu	37	11	132180029	132180029	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	132180029	132180029	A	-	DEL	NTM	NM_001144058.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.685	p.K229fs	0.998	superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
OBSCN	84033	genome.wustl.edu	37	1	228444554	228444554	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	228444554	228444554	G	A	SNP	OBSCN	NM_001098623.1	human	genbank	58_37c	+1	reviewed	silent	c.4512	p.A1504	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
PALMD	54873	genome.wustl.edu	37	1	100154698	100154698	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	100154698	100154698	G	A	SNP	PALMD	NM_017734.4	human	genbank	58_37c	+1	validated	silent	c.882	p.L294	0.002	NULL	HMMPfam_Paralemmin	-	no_errors
PARD3	56288	genome.wustl.edu	37	10	34620061	34620061	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	10	34620061	34620061	A	T	SNP	PARD3	NM_019619.3	human	genbank	58_37c	-1	validated	missense	c.2826	p.D942E	0.316	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
PDCD1	5133	genome.wustl.edu	37	2	242793270	242793270	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	2	242793270	242793270	G	A	SNP	PDCD1	NM_005018.2	human	genbank	58_37c	-1	reviewed	silent	c.807	p.D269	0.000	NULL	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
PRPF39	55015	genome.wustl.edu	37	14	45566145	45566145	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	14	45566145	45566145	A	G	SNP	PRPF39	NM_017922.3	human	genbank	58_37c	+1	validated	missense	c.506	p.Y169C	1.000	HMMSmart_SM00386,superfamily_TPR-like	HMMSmart_SM00386,superfamily_TPR-like	-	no_errors
PSD2	84249	genome.wustl.edu	37	5	139202313	139202313	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	5	139202313	139202313	G	-	DEL	PSD2	NM_032289.2	human	genbank	58_37c	+1	provisional	frame_shift_del	c.1213	p.I406fs	1.000	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
PTPN5	84867	genome.wustl.edu	37	11	18765723	18765723	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	18765723	18765723	C	-	DEL	PTPN5	NM_006906.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.121	p.E41fs	0.975	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RETNLB	84666	genome.wustl.edu	37	3	108474726	108474726	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	3	108474726	108474726	C	T	SNP	RETNLB	NM_032579.2	human	genbank	58_37c	-1	validated	missense	c.235	p.G79S	1.000	HMMPfam_Resistin,superfamily_Resistin	HMMPfam_Resistin,superfamily_Resistin	-	no_errors
RGPD8	727851	genome.wustl.edu	37	2	113161599	113161599	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	2	113161599	113161599	A	T	SNP	RGPD8	ENST00000302558	human	ensembl	58_37c	-1	known	missense	c.1220	p.I407N	0.992	NULL	HMMPfam_Ran_BP1,HMMSmart_SM00160,HMMPfam_GRIP,HMMSmart_SM00755,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_PH domain-like	-	no_errors
SCN11A	11280	genome.wustl.edu	37	3	38938447	38938447	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	3	38938447	38938447	G	A	SNP	SCN11A	NM_014139.2	human	genbank	58_37c	-1	validated	silent	c.2292	p.I764	0.999	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SHROOM4	57477	genome.wustl.edu	37	X	50377366	50377366	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	X	50377366	50377366	C	T	SNP	SHROOM4	NM_020717.3	human	genbank	58_37c	-1	reviewed	silent	c.1707	p.R569	0.000	NULL	HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
SYNE1	23345	genome.wustl.edu	37	6	152652696	152652696	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	6	152652696	152652696	G	-	DEL	SYNE1	NM_182961.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.13124	p.P4375fs	1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
SYNM	23336	genome.wustl.edu	37	15	99672941	99672941	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	15	99672941	99672941	C	T	SNP	SYNM	ENST00000336292	human	ensembl	58_37c	+1	known	missense	c.4373	p.S1458L	0.834	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
TBC1D10C	374403	genome.wustl.edu	37	11	67173127	67173127	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	11	67173127	67173127	G	A	SNP	TBC1D10C	NM_198517.2	human	genbank	58_37c	+1	provisional	missense	c.422	p.R141H	0.998	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC	-	no_errors
THBS2	7058	genome.wustl.edu	37	6	169626380	169626380	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	6	169626380	169626380	T	C	SNP	THBS2	NM_003247.2	human	genbank	58_37c	-1	reviewed	silent	c.2433	p.E811	0.895	HMMPfam_TSP_3,superfamily_SSF103647	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMSmart_TSPN,HMMPfam_TSP_3,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_TSP_C,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_SSF103647,superfamily_SSF57196	-	no_errors
TMEM90A	646658	genome.wustl.edu	37	14	74876345	74876345	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	14	74876345	74876345	G	-	DEL	TMEM90A	NM_001105579.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.103	p.Q35fs	1.000	NULL	HMMPfam_CD225	-	no_errors
TNFAIP3	7128	genome.wustl.edu	37	6	138197170	138197170	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	6	138197170	138197170	C	T	SNP	TNFAIP3	NM_006290.2	human	genbank	58_37c	+1	reviewed	silent	c.672	p.F224	0.655	HMMPfam_OTU	HMMPfam_zf-A20,HMMSmart_ZnF_A20,HMMPfam_OTU	-	no_errors
TRIP10	9322	genome.wustl.edu	37	19	6751229	6751229	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	19	6751229	6751229	C	-	DEL	TRIP10	ENST00000420690	human	ensembl	58_37c	+1	known	frame_shift_del	c.1674	p.Q559fs	0.128	NULL	HMMPfam_FCH,HMMSmart_FCH	-	no_errors
UBR4	23352	genome.wustl.edu	37	1	19491831	19491831	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	1	19491831	19491831	T	C	SNP	UBR4	NM_020765.2	human	genbank	58_37c	-1	validated	silent	c.4224	p.V1408	1.000	superfamily_ARM repeat	HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
UGT1A6	54578	genome.wustl.edu	37	2	234601744	234601744	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15T-01A-11D-A10Y-09	TCGA-E2-A15T-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eff74709-36af-4da4-91c1-01100ddc7735	ffc2b70d-1e0c-4ada-8c9a-3553d8c19b25	2	234601744	234601744	G	T	SNP	UGT1A6	NM_001072.3	human	genbank	58_37c	+1	reviewed	missense	c.94	p.V32F	0.000	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
