Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABHD13	0	genome.wustl.edu	37	13	108882099	108882099	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	13	108882099	108882099	C	G	SNP	ABHD13	NM_032859.2	human	genbank	58_37c	+1	validated	missense	c.533	p.T178S	1.000	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases	-	no_errors
ADAMTS3	0	genome.wustl.edu	37	4	73414439	73414439	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	73414439	73414439	A	T	SNP	ADAMTS3	NM_014243.1	human	genbank	58_37c	-1	reviewed	missense	c.260	p.F87Y	1.000	HMMPfam_Pep_M12B_propep	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADCY8	0	genome.wustl.edu	37	8	131916201	131916201	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	8	131916201	131916201	G	C	SNP	ADCY8	NM_001115.2	human	genbank	58_37c	-1	reviewed	missense	c.1728	p.F576L	1.000	HMMPfam_Guanylate_cyc,superfamily_A/G_cyclase	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
AHCY	0	genome.wustl.edu	37	20	32873245	32873245	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	20	32873245	32873245	C	A	SNP	AHCY	NM_000687.2	human	genbank	58_37c	-1	reviewed	splice_site	c.1167+1	e9+1	1.000	-	-	-	no_errors
AHSA1	0	genome.wustl.edu	37	14	77929072	77929072	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	14	77929072	77929072	A	G	SNP	AHSA1	NM_012111.2	human	genbank	58_37c	+1	validated	missense	c.442	p.M148V	0.465	HMMPfam_Aha1_N,superfamily_Activator of Hsp90 ATPase Aha1	HMMPfam_AHSA1,HMMPfam_Aha1_N,superfamily_Activator of Hsp90 ATPase Aha1,superfamily_Bet v1-like	-	no_errors
ANAPC7	0	genome.wustl.edu	37	12	110815309	110815309	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	110815309	110815309	C	T	SNP	ANAPC7	NM_016238.2	human	genbank	58_37c	-1	reviewed	missense	c.1348	p.V450I	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
ASB11	0	genome.wustl.edu	37	X	15306047	15306047	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	15306047	15306047	G	A	SNP	ASB11	NM_080873.1	human	genbank	58_37c	-1	reviewed	missense	c.803	p.A268V	0.985	superfamily_ANK	HMMPfam_SOCS_box,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
ATP13A3	0	genome.wustl.edu	37	3	194151723	194151723	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	3	194151723	194151723	C	T	SNP	ATP13A3	NM_024524.3	human	genbank	58_37c	-1	validated	missense	c.2573	p.R858H	1.000	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Hydrolase,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
ATP6V1A	0	genome.wustl.edu	37	3	113524322	113524322	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	3	113524322	113524322	C	T	SNP	ATP6V1A	NM_001690.2	human	genbank	58_37c	+1	reviewed	missense	c.1711	p.R571C	1.000	HMMPfam_ATP-synt_ab_C,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase	HMMPfam_ATP-synt_ab,HMMPfam_ATP-synt_ab_C,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase,HMMPfam_ATP-synt_ab_N,superfamily_N-terminal domain of alpha and beta subunits of F1 ATP synthase,PatternScan_ATPASE_ALPHA_BETA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BCAR1	0	genome.wustl.edu	37	16	75267782	75267782	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	75267782	75267782	T	C	SNP	BCAR1	NM_014567.3	human	genbank	58_37c	-1	validated	missense	c.2062	p.I688V	1.000	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Serine_rich	-	no_errors
BIVM	0	genome.wustl.edu	37	13	103459852	103459852	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	13	103459852	103459852	G	T	SNP	BIVM	NM_017693.3	human	genbank	58_37c	+1	validated	missense	c.235	p.A79S	1.000	NULL	NULL	-	no_errors
C11orf41	0	genome.wustl.edu	37	11	33581421	33581421	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	11	33581421	33581421	T	C	SNP	C11orf41	NM_012194.1	human	genbank	58_37c	+1	validated	missense	c.3109	p.F1037L	1.000	NULL	NULL	-	no_errors
C14orf147	0	genome.wustl.edu	37	14	34904481	34904481	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	14	34904481	34904481	C	T	SNP	C14orf147	NM_138288.3	human	genbank	58_37c	-1	validated	missense	c.142	p.A48T	1.000	NULL	NULL	-	no_errors
C14orf153	0	genome.wustl.edu	37	14	104040485	104040485	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	14	104040485	104040485	C	T	SNP	C14orf153	NM_032374.3	human	genbank	58_37c	+1	validated	silent	c.402	p.G134	0.910	HMMPfam_DUF2315	HMMPfam_DUF2315	-	no_errors
C14orf39	0	genome.wustl.edu	37	14	60908795	60908795	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	14	60908795	60908795	T	G	SNP	C14orf39	NM_174978.2	human	genbank	58_37c	-1	validated	missense	c.1558	p.I520L	1.000	NULL	NULL	-	no_errors
C16orf45	0	genome.wustl.edu	37	16	15677024	15677024	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	15677024	15677024	A	C	SNP	C16orf45	NM_033201.2	human	genbank	58_37c	+1	validated	missense	c.431	p.E144A	1.000	NULL	NULL	-	no_errors
CDH7	0	genome.wustl.edu	37	18	63491905	63491905	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	18	63491905	63491905	G	A	SNP	CDH7	NM_004361.2	human	genbank	58_37c	+1	reviewed	silent	c.819	p.E273	0.929	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
CDH8	0	genome.wustl.edu	37	16	61823301	61823301	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	61823301	61823301	C	G	SNP	CDH8	NM_001796.2	human	genbank	58_37c	-1	reviewed	missense	c.1363	p.D455H	1.000	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CDH9	0	genome.wustl.edu	37	5	26890044	26890044	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	5	26890044	26890044	G	A	SNP	CDH9	NM_016279.3	human	genbank	58_37c	-1	reviewed	silent	c.1413	p.H471	0.003	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CDK5RAP2	0	genome.wustl.edu	37	9	123201828	123201828	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	9	123201828	123201828	G	C	SNP	CDK5RAP2	NM_018249.4	human	genbank	58_37c	-1	reviewed	missense	c.3571	p.P1191A	0.465	NULL	HMMPfam_Microtub_assoc	-	no_errors
CGN	0	genome.wustl.edu	37	1	151492732	151492732	+	Silent	SNP	C	C	T	rs34671806	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	151492732	151492732	C	T	SNP	CGN	NM_020770.2	human	genbank	58_37c	+1	validated	silent	c.964	p.L322	1.000	NULL	HMMPfam_Myosin_tail_1	-	no_errors
CKB	0	genome.wustl.edu	37	14	103986486	103986486	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	14	103986486	103986486	G	A	SNP	CKB	NM_001823.3	human	genbank	58_37c	-1	reviewed	missense	c.940	p.R314W	1.000	HMMPfam_ATP-gua_Ptrans,superfamily_SSF55931	HMMPfam_ATP-gua_Ptrans,HMMPfam_ATP-gua_PtransN,PatternScan_GUANIDO_KINASE,superfamily_ATP-gua_Ptrans,superfamily_SSF55931	-	no_errors
COMP	0	genome.wustl.edu	37	19	18899673	18899673	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	18899673	18899673	G	A	SNP	COMP	NM_000095.2	human	genbank	58_37c	-1	reviewed	missense	c.578	p.P193L	1.000	HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	HMMSmart_EGF_CA,HMMPfam_TSP_3,HMMSmart_EGF,HMMPfam_TSP_C,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF103647,superfamily_SSF57196	-	no_errors
CTNNA2	0	genome.wustl.edu	37	2	80773158	80773158	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	80773158	80773158	A	C	SNP	CTNNA2	NM_004389.3	human	genbank	58_37c	+1	validated	missense	c.1510	p.T504P	1.000	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	PatternScan_VINCULIN_1,HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
CTU2	0	genome.wustl.edu	37	16	88781476	88781476	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	88781476	88781476	G	A	SNP	CTU2	NM_001012759.1	human	genbank	58_37c	+1	validated	silent	c.1440	p.P480	0.030	NULL	HMMPfam_DUF2392,superfamily_Adenine nucleotide alpha hydrolases-like	-	no_errors
CXorf57	0	genome.wustl.edu	37	X	105879795	105879795	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	105879795	105879795	G	T	SNP	CXorf57	NM_018015.5	human	genbank	58_37c	+1	validated	missense	c.1326	p.Q442H	0.998	NULL	superfamily_Nucleic acid-binding proteins	-	no_errors
DGKI	0	genome.wustl.edu	37	7	137293718	137293718	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	7	137293718	137293718	G	C	SNP	DGKI	NM_004717.2	human	genbank	58_37c	-1	reviewed	silent	c.1161	p.G387	0.999	HMMPfam_DAGK_cat,HMMSmart_DAGKc	HMMPfam_DAGK_acc,HMMSmart_DAGKa,HMMPfam_DAGK_cat,HMMSmart_DAGKc,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1	-	no_errors
DLG3	0	genome.wustl.edu	37	X	69672527	69672527	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	69672527	69672527	C	G	SNP	DLG3	NM_020730.2	human	genbank	58_37c	+1	reviewed	missense	c.56	p.A19G	0.003	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,HMMPfam_Gua_kin_assoc_C,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNTT	0	genome.wustl.edu	37	10	98092226	98092226	+	Missense_Mutation	SNP	G	G	A	rs151142894	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	10	98092226	98092226	G	A	SNP	DNTT	NM_004088.3	human	genbank	58_37c	+1	reviewed	missense	c.1232	p.R411H	0.002	HMMSmart_SM00483,superfamily_Nucleotidyltransferase	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMSmart_SM00483,HMMPfam_NTP_transf_2,superfamily_DNA polymerase beta N-terminal domain-like,HMMPfam_DNA_pol_lambd_f,superfamily_DNA polymerase beta-like second domain,PatternScan_DNA_POLYMERASE_X,superfamily_Nucleotidyltransferase	-	no_errors
DOCK10	0	genome.wustl.edu	37	2	225652079	225652079	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	225652079	225652079	C	T	SNP	DOCK10	NM_014689.2	human	genbank	58_37c	-1	validated	silent	c.5454	p.E1818	0.998	NULL	HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto,superfamily_PH domain-like	-	no_errors
DPP10	0	genome.wustl.edu	37	2	116066924	116066924	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	116066924	116066924	C	G	SNP	DPP10	NM_020868.3	human	genbank	58_37c	+1	validated	missense	c.170	p.T57S	1.000	NULL	HMMPfam_Peptidase_S9,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain	-	no_errors
DSCAM	0	genome.wustl.edu	37	21	41465724	41465724	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	21	41465724	41465724	G	A	SNP	DSCAM	NM_001389.3	human	genbank	58_37c	-1	validated	silent	c.3774	p.S1258	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ELAVL1	0	genome.wustl.edu	37	19	8032481	8032481	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	8032481	8032481	T	G	SNP	ELAVL1	NM_001419.2	human	genbank	58_37c	-1	reviewed	silent	c.624	p.G208	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
ELOVL5	0	genome.wustl.edu	37	6	53140987	53140987	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	6	53140987	53140987	G	C	SNP	ELOVL5	NM_021814.3	human	genbank	58_37c	-1	provisional	nonsense	c.314	p.S105*	0.997	HMMPfam_ELO	HMMPfam_ELO,PatternScan_ELO	-	no_errors
ENSG00000198804	0	genome.wustl.edu	37	MT	6114	6114	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	MT	6114	6114	A	G	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	missense	c.211	p.M71V	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000198938	0	genome.wustl.edu	37	MT	9932	9932	+	Silent	SNP	G	A	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	MT	9932	9932	G	A	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	silent	c.726	p.W242	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
F8	0	genome.wustl.edu	37	X	154133160	154133160	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	154133160	154133160	C	A	SNP	F8	NM_000132.3	human	genbank	58_37c	-1	reviewed	missense	c.5512	p.V1838L	0.931	superfamily_Cupredoxins	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3	-	no_errors
FAM117A	0	genome.wustl.edu	37	17	47793671	47793671	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	17	47793671	47793671	G	A	SNP	FAM117A	NM_030802.3	human	genbank	58_37c	-1	validated	missense	c.917	p.S306F	1.000	NULL	NULL	-	no_errors
FAM75A6	0	genome.wustl.edu	37	9	43630592	43630592	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	9	43630592	43630592	C	A	SNP	FAM75A6	NM_001145196.1	human	genbank	58_37c	-1	predicted	missense	c.110	p.G37V	0.303	NULL	NULL	-	no_errors
FMN2	0	genome.wustl.edu	37	1	240494024	240494024	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	240494024	240494024	C	T	SNP	FMN2	NM_020066.4	human	genbank	58_37c	+1	validated	missense	c.4559	p.P1520L	1.000	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd	HMMSmart_FH2,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
GABRA2	0	genome.wustl.edu	37	4	46264108	46264108	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	46264108	46264108	G	C	SNP	GABRA2	NM_000807.2	human	genbank	58_37c	-1	reviewed	missense	c.894	p.I298M	1.000	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
GARNL3	0	genome.wustl.edu	37	9	130095401	130095401	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	9	130095401	130095401	G	C	SNP	GARNL3	NM_032293.4	human	genbank	58_37c	+1	validated	splice_site	c.769+1	e9+1	1.000	-	-	-	no_errors
GATA3	0	genome.wustl.edu	37	10	8111471	8111472	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	10	8111471	8111472	-	T	INS	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.960_961	p.C320fs	1.000:1.000	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GBAP1	0	genome.wustl.edu	37	1	155187362	155187362	+	RNA	SNP	A	A	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	155187362	155187362	A	G	SNP	GBAP1	NR_002188.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
GBP4	0	genome.wustl.edu	37	1	89658761	89658761	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	89658761	89658761	G	C	SNP	GBP4	NM_052941.4	human	genbank	58_37c	-1	validated	missense	c.496	p.L166V	0.061	HMMPfam_GBP,superfamily_SSF52540	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_GBP,superfamily_SSF52540	-	no_errors
GNPAT	0	genome.wustl.edu	37	1	231411054	231411054	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	231411054	231411054	C	T	SNP	GNPAT	NM_014236.3	human	genbank	58_37c	+1	reviewed	missense	c.1831	p.L611F	0.999	NULL	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593	-	no_errors
GNPDA2	0	genome.wustl.edu	37	4	44709931	44709931	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	44709931	44709931	T	C	SNP	GNPDA2	NM_138335.1	human	genbank	58_37c	-1	provisional	missense	c.607	p.I203V	1.000	HMMPfam_Glucosamine_iso,superfamily_NagB/RpiA/CoA transferase-like	HMMPfam_Glucosamine_iso,PatternScan_GLC_GALNAC_ISOMERASE,superfamily_NagB/RpiA/CoA transferase-like	-	no_errors
GPR17	0	genome.wustl.edu	37	2	128407626	128407626	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	128407626	128407626	C	A	SNP	GPR17	NM_005291.2	human	genbank	58_37c	+1	validated	missense	c.40	p.P14T	0.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
GRIK2	0	genome.wustl.edu	37	6	102483396	102483396	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	6	102483396	102483396	G	C	SNP	GRIK2	NM_021956.4	human	genbank	58_37c	+1	reviewed	missense	c.2266	p.G756R	1.000	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
HIST1H4L	0	genome.wustl.edu	37	6	27841034	27841034	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	6	27841034	27841034	C	T	SNP	HIST1H4L	NM_003546.2	human	genbank	58_37c	-1	reviewed	missense	c.255	p.M85I	1.000	HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold,PatternScan_HISTONE_H4	-	no_errors
HIST2H2AC	0	genome.wustl.edu	37	1	149858554	149858554	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	149858554	149858554	G	A	SNP	HIST2H2AC	NM_003517.2	human	genbank	58_37c	+1	reviewed	silent	c.30	p.K10	0.991	HMMSmart_SM00414,superfamily_Histone-fold	HMMSmart_SM00414,PatternScan_HISTONE_H2A,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
HMCN1	0	genome.wustl.edu	37	1	185892721	185892721	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	185892721	185892721	C	A	SNP	HMCN1	NM_031935.2	human	genbank	58_37c	+1	reviewed	silent	c.1221	p.G407	1.000	NULL	PatternScan_ASX_HYDROXYL,PatternScan_CECROPIN,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00179,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_I-set,HMMPfam_ig,PatternScan_EGF_CA,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
HPD	0	genome.wustl.edu	37	12	122277893	122277893	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	122277893	122277893	G	A	SNP	HPD	NM_002150.2	human	genbank	58_37c	-1	reviewed	missense	c.1016	p.P339L	1.000	superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	HMMPfam_Glyoxalase,superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	-	no_errors
IFNA2	0	genome.wustl.edu	37	9	21385064	21385064	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	9	21385064	21385064	G	T	SNP	IFNA2	NM_000605.3	human	genbank	58_37c	-1	validated	missense	c.265	p.L89I	0.404	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine	HMMPfam_Interferon,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D,superfamily_4_helix_cytokine	-	no_errors
IKZF4	0	genome.wustl.edu	37	12	56418866	56418866	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	56418866	56418866	G	T	SNP	IKZF4	NM_022465.3	human	genbank	58_37c	+1	validated	missense	c.210	p.E70D	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
IRAK4	0	genome.wustl.edu	37	12	44176271	44176271	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	44176271	44176271	C	A	SNP	IRAK4	NM_001114182.2	human	genbank	58_37c	+1	reviewed	missense	c.1103	p.S368Y	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_DEATH domain,HMMPfam_Pkinase	-	no_errors
KDM6A	0	genome.wustl.edu	37	X	44913106	44913106	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	44913106	44913106	G	C	SNP	KDM6A	NM_021140.2	human	genbank	58_37c	+1	reviewed	missense	c.781	p.D261H	1.000	superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_JmjC,HMMPfam_JmjC,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
KIAA0232	0	genome.wustl.edu	37	4	6863768	6863768	+	Silent	SNP	A	A	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	6863768	6863768	A	T	SNP	KIAA0232	NM_001100590.1	human	genbank	58_37c	+1	validated	silent	c.1659	p.I553	1.000	NULL	NULL	-	no_errors
KIDINS220	0	genome.wustl.edu	37	2	8919137	8919137	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	8919137	8919137	G	A	SNP	KIDINS220	NM_020738.2	human	genbank	58_37c	-1	validated	missense	c.2503	p.R835C	1.000	HMMPfam_KAP_NTPase	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_KAP_NTPase	-	no_errors
KIF16B	0	genome.wustl.edu	37	20	16354954	16354954	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	20	16354954	16354954	T	C	SNP	KIF16B	NM_024704.3	human	genbank	58_37c	-1	validated	missense	c.3298	p.S1100G	0.001	NULL	HMMPfam_FHA,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_LECTIN_LEGUME_BETA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KLHL10	0	genome.wustl.edu	37	17	40004264	40004264	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	17	40004264	40004264	C	G	SNP	KLHL10	NM_152467.3	human	genbank	58_37c	+1	validated	missense	c.1532	p.P511R	1.000	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
KRTAP10-5	0	genome.wustl.edu	37	21	45999699	45999699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	21	45999699	45999699	G	A	SNP	KRTAP10-5	NM_198694.2	human	genbank	58_37c	-1	reviewed	missense	c.757	p.R253C	0.881	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LETM1	0	genome.wustl.edu	37	4	1834627	1834627	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	1834627	1834627	A	G	SNP	LETM1	NM_012318.2	human	genbank	58_37c	-1	reviewed	silent	c.924	p.F308	1.000	HMMPfam_LETM1	HMMPfam_LETM1,PatternScan_EF_HAND_1	-	no_errors
LIPI	0	genome.wustl.edu	37	21	15554120	15554120	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	21	15554120	15554120	G	T	SNP	LIPI	NM_198996.2	human	genbank	58_37c	-1	validated	missense	c.665	p.T222K	0.998	HMMPfam_Lipase,superfamily_SSF53474	HMMPfam_Lipase,superfamily_SSF53474	-	no_errors
LOC729057	0	genome.wustl.edu	37	22	16123194	16123194	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	22	16123194	16123194	G	A	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.002	-	-	-	no_errors
LPIN2	0	genome.wustl.edu	37	18	2937960	2937960	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	18	2937960	2937960	C	G	SNP	LPIN2	NM_014646.2	human	genbank	58_37c	-1	reviewed	missense	c.898	p.V300L	1.000	NULL	HMMPfam_Lipin_N,HMMPfam_LNS2,HMMSmart_LNS2,superfamily_SSF56784	-	no_errors
LRTM2	0	genome.wustl.edu	37	12	1940299	1940299	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	1940299	1940299	C	A	SNP	LRTM2	NM_001039029.2	human	genbank	58_37c	+1	validated	missense	c.266	p.A89D	0.997	HMMSmart_SM00369,superfamily_L domain-like	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors
MDH1B	0	genome.wustl.edu	37	2	207625725	207625725	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	207625725	207625725	C	A	SNP	MDH1B	NM_001039845.1	human	genbank	58_37c	-1	validated	missense	c.35	p.C12F	1.000	NULL	superfamily_LDH C-terminal domain-like,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
MIR301A	0	genome.wustl.edu	37	17	57228573	57228573	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	17	57228573	57228573	C	T	SNP	MIR301A	ENST00000385261	human	ensembl	58_37c	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
MLL4	0	genome.wustl.edu	37	19	36220105	36220105	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	36220105	36220105	G	A	SNP	MLL4	NM_014727.1	human	genbank	58_37c	+1	reviewed	missense	c.4825	p.V1609I	0.991	NULL	HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MMD2	0	genome.wustl.edu	37	7	4947132	4947132	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	7	4947132	4947132	G	A	SNP	MMD2	NM_001100600.1	human	genbank	58_37c	-1	validated	silent	c.708	p.H236	0.941	HMMPfam_HlyIII	HMMPfam_HlyIII	-	no_errors
MOBP	0	genome.wustl.edu	37	3	39543701	39543701	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	3	39543701	39543701	T	G	SNP	MOBP	NM_182935.2	human	genbank	58_37c	+1	validated	missense	c.141	p.C47W	0.951	HMMPfam_MOBP	HMMPfam_MOBP	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1268294	1268294	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	11	1268294	1268294	C	A	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.10193	p.T3398N	0.001	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1271076	1271076	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	11	1271076	1271076	C	T	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	silent	c.12975	p.S4325	0.001	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MYD88	0	genome.wustl.edu	37	3	38182756	38182756	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	3	38182756	38182756	C	G	SNP	MYD88	NM_002468.4	human	genbank	58_37c	+1	reviewed	silent	c.909	p.A303	1.000	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain	-	no_errors
MYH8	0	genome.wustl.edu	37	17	10318692	10318692	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	17	10318692	10318692	C	G	SNP	MYH8	NM_002472.2	human	genbank	58_37c	-1	reviewed	missense	c.658	p.E220Q	1.000	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NCKAP1	0	genome.wustl.edu	37	2	183843584	183843584	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	183843584	183843584	C	A	SNP	NCKAP1	NM_205842.1	human	genbank	58_37c	-1	validated	missense	c.1419	p.M473I	1.000	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
NCKAP5	0	genome.wustl.edu	37	2	133483301	133483301	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	133483301	133483301	G	T	SNP	NCKAP5	NM_207363.2	human	genbank	58_37c	-1	validated	missense	c.5612	p.A1871D	1.000	NULL	NULL	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279837	46279839	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	20	46279837	46279839	CAG	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3763_3765	p.Q1258in_frame_del	0.584:0.607:0.598	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
NCOR1	0	genome.wustl.edu	37	17	15989636	15989636	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	17	15989636	15989636	G	T	SNP	NCOR1	NM_006311.2	human	genbank	58_37c	-1	reviewed	nonsense	c.3137	p.S1046*	1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NDUFA6	0	genome.wustl.edu	37	22	42483141	42483141	+	Missense_Mutation	SNP	G	G	A	rs8139803	by2Hit2Allele	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	22	42483141	42483141	G	A	SNP	NDUFA6	NM_002490.3	human	genbank	58_37c	-1	validated	missense	c.256	p.R86W	0.999	HMMPfam_Complex1_LYR	HMMPfam_Complex1_LYR	-	no_errors
NSL1	0	genome.wustl.edu	37	1	212912896	212912896	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	212912896	212912896	C	G	SNP	NSL1	NM_015471.3	human	genbank	58_37c	-1	reviewed	missense	c.547	p.E183Q	0.988	HMMPfam_Mis14	PatternScan_N6_MTASE,HMMPfam_Mis14	-	no_errors
NUMBL	0	genome.wustl.edu	37	19	41175875	41175875	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	41175875	41175875	G	C	SNP	NUMBL	NM_004756.3	human	genbank	58_37c	-1	validated	missense	c.1087	p.L363V	0.954	HMMPfam_NumbF	HMMPfam_PID,HMMSmart_PTB,HMMPfam_NumbF,superfamily_SSF50729	-	no_errors
NUP160	0	genome.wustl.edu	37	11	47869781	47869781	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	11	47869781	47869781	G	C	SNP	NUP160	NM_015231.1	human	genbank	58_37c	-1	validated	silent	c.192	p.V64	0.103	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
OBSCN	0	genome.wustl.edu	37	1	228521396	228521396	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	228521396	228521396	C	A	SNP	OBSCN	NM_001098623.1	human	genbank	58_37c	+1	reviewed	silent	c.15969	p.V5323	0.827	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
OPTC	0	genome.wustl.edu	37	1	203468972	203468972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	203468972	203468972	C	T	SNP	OPTC	NM_014359.3	human	genbank	58_37c	+1	reviewed	missense	c.725	p.A242V	0.251	superfamily_SSF52058	HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
OR4C45	0	genome.wustl.edu	37	11	48373765	48373765	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	11	48373765	48373765	C	A	SNP	OR4C45	ENST00000415304	human	ensembl	58_37c	-1	known	missense	c.235	p.D79Y	0.814	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PALLD	0	genome.wustl.edu	37	4	169632939	169632939	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	169632939	169632939	C	T	SNP	PALLD	NM_016081.3	human	genbank	58_37c	+1	reviewed	missense	c.1829	p.T610M	0.020	NULL	PatternScan_DEHYDRATASE_SER_THR,HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726	-	no_errors
PDE10A	0	genome.wustl.edu	37	6	165792776	165792776	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	6	165792776	165792776	A	G	SNP	PDE10A	NM_001130690.1	human	genbank	58_37c	-1	validated	missense	c.1892	p.I631T	1.000	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_GAF,HMMSmart_HDc,superfamily_SSF109604,superfamily_SSF55781	-	no_errors
PGA5	0	genome.wustl.edu	37	11	61017398	61017398	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	11	61017398	61017398	G	C	SNP	PGA5	NM_014224.2	human	genbank	58_37c	+1	validated	missense	c.929	p.S310T	0.765	HMMPfam_Asp,superfamily_Pept_Aspartic	HMMPfam_Asp,PatternScan_ASP_PROTEASE,superfamily_Pept_Aspartic,HMMPfam_A1_Propeptide	-	no_errors
PHC1B	0	genome.wustl.edu	37	12	55805942	55805942	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	55805942	55805942	C	G	SNP	PHC1B	ENST00000326184	human	ensembl	58_37c	-1	known	missense	c.2579	p.R860P	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_zf-FCS,superfamily_SAM/Pointed domain	-	no_errors
PHIP	0	genome.wustl.edu	37	6	79725444	79725444	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	6	79725444	79725444	G	T	SNP	PHIP	NM_017934.5	human	genbank	58_37c	-1	validated	missense	c.1292	p.A431D	1.000	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_BROMODOMAIN_1,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
PIGB	0	genome.wustl.edu	37	15	55633010	55633010	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	15	55633010	55633010	G	C	SNP	PIGB	NM_004855.4	human	genbank	58_37c	+1	reviewed	silent	c.1047	p.L349	0.499	HMMPfam_Glyco_transf_22	HMMPfam_Glyco_transf_22	-	no_errors
PLXND1	0	genome.wustl.edu	37	3	129286352	129286352	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	3	129286352	129286352	G	A	SNP	PLXND1	NM_015103.2	human	genbank	58_37c	-1	validated	missense	c.4069	p.R1357C	1.000	HMMPfam_Plexin_cytopl	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat	-	no_errors
POLR3GL	0	genome.wustl.edu	37	1	145457582	145457582	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	145457582	145457582	C	A	SNP	POLR3GL	NM_032305.1	human	genbank	58_37c	-1	provisional	missense	c.348	p.E116D	1.000	NULL	NULL	-	no_errors
PRDM6	0	genome.wustl.edu	37	5	122491625	122491625	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	5	122491625	122491625	A	T	SNP	PRDM6	NM_001136239.1	human	genbank	58_37c	+1	validated	missense	c.948	p.E316D	0.996	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain	HMMPfam_SET,HMMSmart_SM00317,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_SET domain	-	no_errors
PRKCB	0	genome.wustl.edu	37	16	24124299	24124299	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	24124299	24124299	A	T	SNP	PRKCB	NM_002738.6	human	genbank	58_37c	+1	reviewed	missense	c.827	p.K276M	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_Cysteine-rich domain	-	no_errors
PRPF6	0	genome.wustl.edu	37	20	62626765	62626765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	20	62626765	62626765	G	A	SNP	PRPF6	NM_012469.3	human	genbank	58_37c	+1	reviewed	missense	c.701	p.G234D	1.000	NULL	HMMPfam_TPR_1,HMMSmart_HAT,HMMPfam_PRP1_N,superfamily_SSF48452	-	no_errors
RAD51L3	0	genome.wustl.edu	37	17	33443953	33443953	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	17	33443953	33443953	C	T	SNP	RAD51L3	NM_001142571.1	human	genbank	58_37c	-1	reviewed	missense	c.248	p.G83E	0.002	NULL	HMMPfam_HhH-GPD,HMMSmart_AAA,superfamily_SSF52540	-	no_errors
RAI2	0	genome.wustl.edu	37	X	17819682	17819682	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	17819682	17819682	G	T	SNP	RAI2	NM_021785.4	human	genbank	58_37c	-1	reviewed	missense	c.449	p.T150N	0.869	NULL	NULL	-	no_errors
RBP5	0	genome.wustl.edu	37	12	7280866	7280866	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	7280866	7280866	G	A	SNP	RBP5	NM_031491.2	human	genbank	58_37c	-1	provisional	silent	c.222	p.D74	1.000	HMMPfam_Lipocalin,superfamily_Calycin	PatternScan_FABP,HMMPfam_Lipocalin,superfamily_Calycin	-	no_errors
RETSAT	0	genome.wustl.edu	37	2	85570908	85570908	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	85570908	85570908	G	C	SNP	RETSAT	NM_017750.3	human	genbank	58_37c	-1	validated	missense	c.1547	p.T516S	0.003	superfamily_FAD/NAD(P)-binding domain	PatternScan_RCC1_2,HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain	-	no_errors
RFPL2	0	genome.wustl.edu	37	22	32589028	32589028	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	22	32589028	32589028	G	T	SNP	RFPL2	NM_006605.3	human	genbank	58_37c	-1	validated	nonsense	c.234	p.C78*	0.002	superfamily_RING/U-box	HMMPfam_SPRY,HMMSmart_SM00589,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RPTN	0	genome.wustl.edu	37	1	152128108	152128108	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	152128108	152128108	C	G	SNP	RPTN	NM_001122965.1	human	genbank	58_37c	-1	validated	missense	c.1467	p.K489N	0.001	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
SAMD9	0	genome.wustl.edu	37	7	92731415	92731415	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	7	92731415	92731415	G	C	SNP	SAMD9	NM_017654.2	human	genbank	58_37c	-1	validated	missense	c.3996	p.C1332W	0.000	NULL	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology	-	no_errors
SCYL3	0	genome.wustl.edu	37	1	169825046	169825046	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	169825046	169825046	C	T	SNP	SCYL3	NM_181093.2	human	genbank	58_37c	-1	validated	silent	c.1365	p.L455	0.299	NULL	HMMPfam_HEAT,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat	-	no_errors
SEMG2	0	genome.wustl.edu	37	20	43851891	43851891	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	20	43851891	43851891	C	G	SNP	SEMG2	NM_003008.2	human	genbank	58_37c	+1	reviewed	missense	c.1618	p.H540D	0.000	HMMPfam_Semenogelin	HMMPfam_Semenogelin	-	no_errors
SFRS14	0	genome.wustl.edu	37	19	19112432	19112432	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	19112432	19112432	G	A	SNP	SFRS14	NM_001017392.3	human	genbank	58_37c	-1	reviewed	missense	c.2981	p.S994F	0.996	NULL	HMMPfam_Surp,HMMSmart_SM00648,HMMPfam_G-patch,HMMSmart_SM00443,superfamily_Surp module (SWAP domain Pfam 01805)	-	no_errors
SLC6A13	0	genome.wustl.edu	37	12	368960	368960	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	368960	368960	G	A	SNP	SLC6A13	ENST00000436453	human	ensembl	58_37c	-1	known	missense	c.259	p.L87F	0.043	NULL	HMMPfam_SNF	-	no_errors
SMURF1	0	genome.wustl.edu	37	7	98638117	98638117	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	7	98638117	98638117	G	T	SNP	SMURF1	NM_020429.1	human	genbank	58_37c	-1	reviewed	missense	c.1512	p.H504Q	1.000	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
SP140L	0	genome.wustl.edu	37	2	231266471	231266471	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	231266471	231266471	G	T	SNP	SP140L	NM_138402.4	human	genbank	58_37c	+1	provisional	silent	c.1593	p.G531	0.031	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain	HMMPfam_SAND,HMMSmart_SM00258,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_Sp100,superfamily_SAND domain-like,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
SPDYE7P	0	genome.wustl.edu	37	7	72336982	72336982	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	7	72336982	72336982	C	T	SNP	SPDYE7P	NR_003666.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.089	-	-	-	pseudogene
SRCAP	0	genome.wustl.edu	37	16	30745237	30745237	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	30745237	30745237	G	T	SNP	SRCAP	NM_006662.2	human	genbank	58_37c	+1	validated	nonsense	c.6517	p.E2173*	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,HMMPfam_AT_hook,HMMSmart_SM00384,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
STAM2	0	genome.wustl.edu	37	2	152977211	152977211	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	152977211	152977211	C	T	SNP	STAM2	NM_005843.4	human	genbank	58_37c	-1	reviewed	silent	c.1455	p.V485	1.000	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_VHS,HMMPfam_UIM,HMMSmart_SM00726,superfamily_ENTH/VHS domain,HMMSmart_SM00288	-	no_errors
TBX15	0	genome.wustl.edu	37	1	119467310	119467310	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	119467310	119467310	T	C	SNP	TBX15	NM_152380.2	human	genbank	58_37c	-1	reviewed	missense	c.334	p.K112E	1.000	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TDGF3	0	genome.wustl.edu	37	X	109764333	109764333	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	109764333	109764333	C	G	SNP	TDGF3	NR_002718.2	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.001	-	-	-	pseudogene
TLR3	0	genome.wustl.edu	37	4	187004105	187004105	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	187004105	187004105	T	C	SNP	TLR3	NM_003265.2	human	genbank	58_37c	+1	reviewed	missense	c.1265	p.I422T	0.126	superfamily_SSF52058	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR,HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
TMEM132D	0	genome.wustl.edu	37	12	129558828	129558828	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	129558828	129558828	C	A	SNP	TMEM132D	NM_133448.2	human	genbank	58_37c	-1	validated	missense	c.2892	p.W964C	1.000	NULL	NULL	-	no_errors
TMEM186	0	genome.wustl.edu	37	16	8890208	8890208	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	8890208	8890208	C	T	SNP	TMEM186	NM_015421.3	human	genbank	58_37c	-1	validated	silent	c.243	p.L81	0.965	NULL	NULL	-	no_errors
TMEM64	0	genome.wustl.edu	37	8	91638033	91638033	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	8	91638033	91638033	T	A	SNP	TMEM64	NM_001008495.3	human	genbank	58_37c	-1	validated	missense	c.1009	p.N337Y	1.000	NULL	HMMPfam_SNARE_assoc	-	no_errors
TMPRSS6	0	genome.wustl.edu	37	22	37465386	37465390	+	Splice_Site	DEL	TGGGG	TGGGG	-	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	TGGGG	TGGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	22	37465386	37465390	TGGGG	-	DEL	TMPRSS6	NM_153609.2	human	genbank	58_37c	-1	reviewed	splice_site_del	c.1869-6_1869-2	e16-2	1.000:1.000:0.989:0.978:0.614	-	-	-	no_errors
TNFRSF25	0	genome.wustl.edu	37	1	6522132	6522132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	1	6522132	6522132	G	T	SNP	TNFRSF25	NM_148965.1	human	genbank	58_37c	-1	reviewed	missense	c.874	p.P292T	0.000	NULL	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_TNFR_c6,HMMSmart_TNFR,PatternScan_TNFR_NGFR_1,superfamily_DEATH_like,PatternScan_EGF_2,superfamily_SSF57586	-	no_errors
TNS1	0	genome.wustl.edu	37	2	218745658	218745658	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	218745658	218745658	G	A	SNP	TNS1	ENST00000453356	human	ensembl	58_37c	-1	known	nonsense	c.343	p.R115*	0.028	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TRPM3	0	genome.wustl.edu	37	9	73458041	73458041	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	9	73458041	73458041	C	A	SNP	TRPM3	NM_001007471.2	human	genbank	58_37c	-1	reviewed	missense	c.679	p.V227F	1.000	NULL	HMMPfam_Ion_trans	-	no_errors
TTN	0	genome.wustl.edu	37	2	179438827	179438827	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	179438827	179438827	G	T	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.64322	p.P21441Q	1.000	HMMPfam_fn3	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UGT2B11	0	genome.wustl.edu	37	4	70066051	70066053	+	Splice_Site	DEL	TTG	TTG	-	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	4	70066051	70066053	TTG	-	DEL	UGT2B11	ENST00000339286	human	ensembl	58_37c	-1	known	splice_site_del	c.1590+2_0	e7-1	0.258:0.267:0.309	-	-	-	no_errors
UHRF1BP1L	0	genome.wustl.edu	37	12	100444935	100444935	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	12	100444935	100444935	G	C	SNP	UHRF1BP1L	NM_015054.1	human	genbank	58_37c	-1	validated	missense	c.3489	p.N1163K	0.000	NULL	NULL	-	no_errors
USP9X	0	genome.wustl.edu	37	X	41043849	41043849	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	X	41043849	41043849	C	G	SNP	USP9X	NM_001039590.2	human	genbank	58_37c	+1	reviewed	missense	c.3479	p.T1160S	1.000	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
VAX1	0	genome.wustl.edu	37	10	118891744	118891744	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	10	118891744	118891744	C	G	SNP	VAX1	NM_199131.2	human	genbank	58_37c	-1	reviewed	silent	c.537	p.G179	0.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	no_errors
WDR24	0	genome.wustl.edu	37	16	735108	735109	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	16	735108	735109	-	A	INS	WDR24	NM_032259.2	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.2088_2087	p.V697fs	1.000:1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
XPNPEP3	0	genome.wustl.edu	37	22	41253216	41253216	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	22	41253216	41253216	G	C	SNP	XPNPEP3	NM_022098.2	human	genbank	58_37c	+1	validated	missense	c.31	p.V11L	0.997	NULL	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase,HMMPfam_AMP_N,superfamily_Creatinase/prolidase N-terminal domain	-	no_errors
YSK4	0	genome.wustl.edu	37	2	135756375	135756375	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	2	135756375	135756375	G	T	SNP	YSK4	NM_025052.3	human	genbank	58_37c	-1	validated	missense	c.507	p.N169K	0.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
ZNF354A	0	genome.wustl.edu	37	5	178154017	178154017	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	5	178154017	178154017	C	G	SNP	ZNF354A	NM_005649.2	human	genbank	58_37c	-1	validated	missense	c.143	p.R48T	0.002	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF417	0	genome.wustl.edu	37	19	58420121	58420121	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	58420121	58420121	C	G	SNP	ZNF417	NM_152475.2	human	genbank	58_37c	-1	validated	missense	c.1525	p.V509L	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF606	0	genome.wustl.edu	37	19	58489955	58489955	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	19	58489955	58489955	T	G	SNP	ZNF606	NM_025027.3	human	genbank	58_37c	-1	validated	missense	c.2093	p.H698P	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZSWIM6	0	genome.wustl.edu	37	5	60839621	60839621	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1RF-01A-11D-A159-09	TCGA-E9-A1RF-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	43983619-d863-4816-a334-445f6ca36541	0c36d388-c63d-4ab1-8303-6d5005708525	5	60839621	60839621	A	T	SNP	ZSWIM6	NM_020928.1	human	genbank	58_37c	+1	provisional	missense	c.3125	p.Y1042F	1.000	NULL	HMMPfam_SWIM	-	no_errors
