Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA12	0	genome.wustl.edu	37	2	215818580	215818580	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	2	215818580	215818580	G	A	SNP	ABCA12	NM_173076.2	human	genbank	58_37c	-1	reviewed	silent	c.6645	p.L2215	1.000	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431.1	human	genbank	58_37c	-1	reviewed	missense	c.49	p.E17K	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like	-	no_errors
ALAD	0	genome.wustl.edu	37	9	116155798	116155798	+	Silent	SNP	T	T	C	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	9	116155798	116155798	T	C	SNP	ALAD	NM_000031.5	human	genbank	58_37c	-1	reviewed	silent	c.42	p.P14	0.003	HMMPfam_ALAD,superfamily_SSF51569	HMMPfam_ALAD,PatternScan_D_ALA_DEHYDRATASE,superfamily_SSF51569	-	no_errors
CDC27	0	genome.wustl.edu	37	17	45219311	45219311	+	Missense_Mutation	SNP	T	T	C	rs140737545	byFrequency	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	17	45219311	45219311	T	C	SNP	CDC27	NM_001114091.1	human	genbank	58_37c	-1	reviewed	missense	c.1477	p.I493V	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
CDH23	0	genome.wustl.edu	37	10	73501658	73501658	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	10	73501658	73501658	G	A	SNP	CDH23	NM_022124.5	human	genbank	58_37c	+1	reviewed	missense	c.4825	p.E1609K	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
CRTAC1	0	genome.wustl.edu	37	10	99655057	99655057	+	Silent	SNP	G	G	T	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	10	99655057	99655057	G	T	SNP	CRTAC1	NM_018058.4	human	genbank	58_37c	-1	validated	silent	c.1431	p.I477	0.933	HMMPfam_UnbV_ASPIC	HMMSmart_SM00179,HMMPfam_UnbV_ASPIC,HMMPfam_EGF_CA,HMMPfam_FG-GAP,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Integrin alpha N-terminal domain	-	no_errors
CTCF	0	genome.wustl.edu	37	16	67645412	67645412	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	16	67645412	67645412	A	G	SNP	CTCF	NM_006565.2	human	genbank	58_37c	+1	reviewed	missense	c.677	p.Y226C	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
DCHS1	0	genome.wustl.edu	37	11	6662745	6662746	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	11	6662745	6662746	-	CAG	INS	DCHS1	NM_003737.2	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.100_99	p.33in_frame_insL	1.000:1.000	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
DCP1B	0	genome.wustl.edu	37	12	2062323	2062324	+	In_Frame_Ins	INS	-	-	TGC	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	12	2062323	2062324	-	TGC	INS	DCP1B	NM_152640.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.783_782	p.262in_frame_insQ	0.742:0.836	NULL	HMMPfam_DCP1,superfamily_PH domain-like	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88537249	88537249	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	4	88537249	88537249	T	C	SNP	DSPP	ENST00000432448	human	ensembl	58_37c	+1	known	missense	c.1835	p.V612A	0.924	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_OPT,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_CitMHS,HMMPfam_C4dic_mal_tran,HMMPfam_OPT,HMMPfam_TerC,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1,HMMPfam_DUF2339	-	no_start_codon:no_stop_codon
ENSG00000198938	0	genome.wustl.edu	37	MT	9283	9283	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	MT	9283	9283	T	C	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	missense	c.77	p.L26P	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000210112	0	genome.wustl.edu	37	MT	4435	4435	+	RNA	SNP	A	A	G	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	MT	4435	4435	A	G	SNP	ENSG00000210112	ENST00000387377	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000235048	0	genome.wustl.edu	37	15	29008694	29008694	+	Silent	SNP	C	C	G	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	15	29008694	29008694	C	G	SNP	ENSG00000235048	ENST00000456510	human	ensembl	58_37c	-1	known	silent	c.549	p.S183	0.918	NULL	NULL	-	no_start_codon:no_stop_codon
FAM58B	0	genome.wustl.edu	37	1	200182704	200182727	+	In_Frame_Del	DEL	GAGGACGCCGGAGAGGAGGCCGGA	GAGGACGCCGGAGAGGAGGCCGGA	-	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	GAGGACGCCGGAGAGGAGGCCGGA	GAGGACGCCGGAGAGGAGGCCGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	1	200182704	200182727	GAGGACGCCGGAGAGGAGGCCGGA	-	DEL	FAM58B	NM_001105517.1	human	genbank	58_37c	+1	provisional	in_frame_del	c.13_36	p.GEEAGEDA8in_frame_del	0.000:0.002:0.001:0.001:0.001:0.001:0.002:0.000:0.001:0.001:0.003:0.002:0.001:0.000:0.000:0.001:0.000:0.001:0.003:0.007:0.011:0.029:0.029:0.038	NULL	HMMSmart_CYCLIN,PatternScan_CYCLINS,superfamily_Cyclin_like	-	no_errors
FLNB	0	genome.wustl.edu	37	3	58154202	58154202	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	3	58154202	58154202	G	T	SNP	FLNB	NM_001457.3	human	genbank	58_37c	+1	reviewed	missense	c.7234	p.A2412S	1.000	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin	HMMSmart_IG_FLMN,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,superfamily_Ig_E-set,superfamily_Calponin-homology,HMMPfam_Filamin	-	no_errors
HIST1H1T	0	genome.wustl.edu	37	6	26108248	26108248	+	Missense_Mutation	SNP	C	C	T	rs142806773	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	6	26108248	26108248	C	T	SNP	HIST1H1T	NM_005323.3	human	genbank	58_37c	-1	reviewed	missense	c.74	p.R25Q	0.000	NULL	HMMPfam_Linker_histone,HMMSmart_H15,superfamily_SSF46785	-	no_errors
HTRA1	0	genome.wustl.edu	37	10	124269648	124269648	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	10	124269648	124269648	G	A	SNP	HTRA1	NM_002775.4	human	genbank	58_37c	+1	reviewed	missense	c.1157	p.R386Q	1.000	HMMSmart_PDZ,superfamily_PDZ	HMMSmart_IB,HMMPfam_Trypsin,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_KAZAL,superfamily_Pept_Ser_Cys,HMMPfam_Kazal_2	-	no_errors
IFT140	0	genome.wustl.edu	37	16	1570681	1570681	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	16	1570681	1570681	C	T	SNP	IFT140	NM_014714.3	human	genbank	58_37c	-1	validated	silent	c.3582	p.Q1194	1.000	superfamily_TPR-like	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40,superfamily_TPR-like	-	no_errors
KIF21B	0	genome.wustl.edu	37	1	200969064	200969064	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	1	200969064	200969064	C	T	SNP	KIF21B	NM_017596.2	human	genbank	58_37c	-1	provisional	missense	c.1714	p.A572T	0.841	superfamily_WD40_like	HMMSmart_WD40,HMMPfam_Kinesin,HMMSmart_KISc,superfamily_Prefoldin,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
LOC642587	0	genome.wustl.edu	37	1	209605637	209605648	+	In_Frame_Del	DEL	AGCAGCAGCAGC	AGCAGCAGCAGC	-	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	AGCAGCAGCAGC	AGCAGCAGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	1	209605637	209605648	AGCAGCAGCAGC	-	DEL	LOC642587	NM_001104548.1	human	genbank	58_37c	+1	validated	in_frame_del	c.252_263	p.AAAA88in_frame_del	0.000:0.000:0.000:0.000:0.000:0.002:0.000:0.000:0.000:0.000:0.000:0.000	NULL	NULL	-	no_errors
LOC728026	0	genome.wustl.edu	37	9	97109766	97109766	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	9	97109766	97109766	G	T	SNP	LOC728026	XM_001126659.3	human	genbank	58_37c	-1	model	missense	c.80	p.A27E	0.998	HMMPfam_Prothymosin	HMMPfam_Prothymosin	-	no_errors
LTV1	0	genome.wustl.edu	37	6	144184640	144184640	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	6	144184640	144184640	G	A	SNP	LTV1	NM_032860.3	human	genbank	58_37c	+1	provisional	silent	c.1404	p.K468	0.732	NULL	HMMPfam_LTV	-	no_errors
MAGEL2	0	genome.wustl.edu	37	15	23889494	23889494	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	15	23889494	23889494	G	C	SNP	MAGEL2	NM_019066.4	human	genbank	58_37c	-1	reviewed	missense	c.1587	p.I529M	0.138	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAML3	0	genome.wustl.edu	37	4	140811064	140811066	+	Frame_Shift_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	4	140811064	140811066	TGC	-	DEL	MAML3	ENST00000398940	human	ensembl	58_37c	-1	known	frame_shift_del	c.110_109	p.Q37fs	1.000:1.000	NULL	NULL	-	no_errors
MAP3K4	0	genome.wustl.edu	37	6	161519351	161519353	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	6	161519351	161519353	CTG	-	DEL	MAP3K4	NM_005922.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3566_3568	p.A1193in_frame_del	0.857:0.937:0.950	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MED15	0	genome.wustl.edu	37	22	20920813	20920814	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	22	20920813	20920814	-	CAG	INS	MED15	NM_001003891.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.750_751	p.254in_frame_insQ	0.993:0.998	NULL	HMMPfam_ARC105_Med_act	-	no_errors
MT-CO2	0	genome.wustl.edu	37	MT	7852	7852	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	MT	7852	7852	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	58_37c	+1	known	silent	c.267	p.E89	NULL	superfamily_Cytochrome c oxidase subunit II-like transmembrane region	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins,HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region	-	mismatch_between_exon_seq_and_reference
MT-CYB	0	genome.wustl.edu	37	MT	15850	15850	+	Silent	SNP	T	T	C	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	MT	15850	15850	T	C	SNP	MT-CYB	ENST00000361789	human	ensembl	58_37c	+1	known	silent	c.1104	p.T368	NULL	superfamily_Cytochrome_b/b6_C	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
MUC12	0	genome.wustl.edu	37	7	100637141	100637141	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	7	100637141	100637141	G	A	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	silent	c.3726	p.E1242	0.001	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
PAPPA	0	genome.wustl.edu	37	9	119106938	119106938	+	Missense_Mutation	SNP	G	G	A	rs142176678	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	9	119106938	119106938	G	A	SNP	PAPPA	NM_002581.3	human	genbank	58_37c	+1	reviewed	missense	c.3728	p.R1243Q	0.158	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module,superfamily_SSF55486	HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_Notch,HMMSmart_NL,PatternScan_ZINC_PROTEASE,HMMSmart_LamGL,HMMPfam_Peptidase_M43,superfamily_ConA_like_lec_gl,superfamily_Complement_control_module,superfamily_SSF55486	-	no_errors
PEX13	0	genome.wustl.edu	37	2	61258802	61258802	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	2	61258802	61258802	C	G	SNP	PEX13	NM_002618.3	human	genbank	58_37c	+1	reviewed	missense	c.341	p.P114R	1.000	HMMPfam_Peroxin-13_N	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Peroxin-13_N	-	no_errors
PRR5L	0	genome.wustl.edu	37	11	36453429	36453429	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	11	36453429	36453429	C	T	SNP	PRR5L	NM_024841.4	human	genbank	58_37c	+1	validated	silent	c.321	p.F107	0.999	HMMPfam_HbrB	HMMPfam_HbrB	-	no_errors
RGSL1	0	genome.wustl.edu	37	1	182517845	182517845	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	1	182517845	182517845	C	A	SNP	RGSL1	NM_001137669.1	human	genbank	58_37c	+1	validated	missense	c.2819	p.P940H	0.970	superfamily_Regulator of G-protein signaling RGS	superfamily_Regulator of G-protein signaling RGS	-	no_errors
RPL14	0	genome.wustl.edu	37	3	40503520	40503521	+	In_Frame_Ins	INS	-	-	CTGCTG	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	3	40503520	40503521	-	CTGCTG	INS	RPL14	NM_001034996.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.445_446	p.153in_frame_insAA	0.019:0.022	NULL	HMMPfam_Ribosomal_L14e	-	no_errors
RPS6KA1	0	genome.wustl.edu	37	1	26882081	26882081	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	1	26882081	26882081	G	A	SNP	RPS6KA1	NM_001006665.1	human	genbank	58_37c	+1	reviewed	missense	c.908	p.R303Q	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
SCAMP5	0	genome.wustl.edu	37	15	75305052	75305052	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	15	75305052	75305052	C	T	SNP	SCAMP5	NM_138967.3	human	genbank	58_37c	+1	validated	silent	c.42	p.F14	1.000	HMMPfam_SCAMP	HMMPfam_SCAMP	-	no_errors
SELPLG	0	genome.wustl.edu	37	12	109017677	109017678	+	In_Frame_Ins	INS	-	-	CCA	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	12	109017677	109017678	-	CCA	INS	SELPLG	ENST00000228463	human	ensembl	58_37c	-1	known	in_frame_ins	c.407_406	p.P136in_frame_insLA	0.004:0.003	NULL	NULL	-	no_errors
SETD1A	0	genome.wustl.edu	37	16	30982802	30982816	+	In_Frame_Del	DEL	CTCCTCATCCTCCTC	CTCCTCATCCTCCTC	-	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	CTCCTCATCCTCCTC	CTCCTCATCCTCCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	16	30982802	30982816	CTCCTCATCCTCCTC	-	DEL	SETD1A	NM_014712.1	human	genbank	58_37c	+1	provisional	in_frame_del	c.3120_3134	p.SSSSS1044in_frame_del	1.000:0.990:0.991:0.989:0.991:0.983:0.009:0.734:0.781:0.676:0.965:0.998:0.986:0.990:0.979	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET,superfamily_SSF54928,superfamily_SSF82199	-	no_errors
TACC2	0	genome.wustl.edu	37	10	123845984	123845984	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	10	123845984	123845984	G	A	SNP	TACC2	NM_206862.2	human	genbank	58_37c	+1	reviewed	silent	c.3969	p.V1323	0.000	NULL	HMMPfam_TACC	-	no_errors
TARBP1	0	genome.wustl.edu	37	1	234566023	234566023	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	1	234566023	234566023	G	C	SNP	TARBP1	NM_005646.3	human	genbank	58_37c	-1	reviewed	missense	c.2419	p.Q807E	1.000	NULL	HMMPfam_SpoU_methylase,superfamily_ARM-type_fold,superfamily_SSF75217	-	no_errors
TRIP11	0	genome.wustl.edu	37	14	92470730	92470730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	14	92470730	92470730	C	T	SNP	TRIP11	NM_004239.3	human	genbank	58_37c	-1	reviewed	missense	c.3590	p.G1197E	1.000	NULL	NULL	-	no_errors
ULBP2	0	genome.wustl.edu	37	6	150267715	150267715	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	6	150267715	150267715	C	G	SNP	ULBP2	NM_025217.2	human	genbank	58_37c	+1	provisional	nonsense	c.557	p.S186*	0.001	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	-	no_errors
USP36	0	genome.wustl.edu	37	17	76798549	76798554	+	In_Frame_Del	DEL	TTTTTC	TTTTTC	-	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	TTTTTC	TTTTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	17	76798549	76798554	TTTTTC	-	DEL	USP36	NM_025090.3	human	genbank	58_37c	-1	validated	in_frame_del	c.2879_2874	p.KK959in_frame_del	0.178:0.173:0.043:0.038:0.100:0.107	NULL	HMMPfam_UCH,PatternScan_IG_MHC,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
WDR44	0	genome.wustl.edu	37	X	117578415	117578415	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	X	117578415	117578415	G	A	SNP	WDR44	NM_019045.4	human	genbank	58_37c	+1	reviewed	missense	c.2605	p.E869K	0.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ZMYM2	0	genome.wustl.edu	37	13	20625607	20625608	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	13	20625607	20625608	CT	-	DEL	ZMYM2	NM_003453.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.2327_2328	p.L777fs	0.998:0.995	HMMPfam_zf-FCS,HMMSmart_TRASH	HMMPfam_zf-FCS,HMMSmart_TRASH	-	no_errors
ZNF358	0	genome.wustl.edu	37	19	7584348	7584348	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	19	7584348	7584348	G	A	SNP	ZNF358	NM_018083.4	human	genbank	58_37c	+1	validated	missense	c.220	p.D74N	0.001	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF384	0	genome.wustl.edu	37	12	6777070	6777072	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-EW-A1IY-01A-11D-A188-09	TCGA-EW-A1IY-10A-01D-A13O-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	01d3fddf-b447-4925-a5cb-c5fd70c97278	c7f01a5c-5823-4fe9-9231-ea937c354172	12	6777070	6777072	TGC	-	DEL	ZNF384	NM_001135734.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1544_1542	p.Q516in_frame_del	0.291:0.350:0.379	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
