Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
RNF207	388591	broad.mit.edu	37	1	6267454	6267454	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:6267454G>A	uc001amg.2	+	3	381	c.207G>A	c.(205-207)CTG>CTA	p.L69L	RNF207_uc001amf.1_Silent_p.L69L|RNF207_uc001amh.2_5'Flank|RNF207_uc010nzp.1_5'Flank	NM_207396	NP_997279	Q6ZRF8	RN207_HUMAN	ring finger protein 207	69						intracellular	zinc ion binding				0	Ovarian(185;0.0634)	all_cancers(23;1.22e-38)|all_epithelial(116;4.25e-22)|all_lung(118;7.95e-08)|Lung NSC(185;1.6e-06)|all_neural(13;3.18e-06)|all_hematologic(16;8.99e-06)|Acute lymphoblastic leukemia(12;0.000365)|Breast(487;0.000496)|Renal(390;0.0007)|Colorectal(325;0.00104)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)|Medulloblastoma(700;0.211)		Epithelial(90;4.84e-38)|GBM - Glioblastoma multiforme(13;5.77e-32)|OV - Ovarian serous cystadenocarcinoma(86;2.88e-19)|Colorectal(212;6.9e-08)|COAD - Colon adenocarcinoma(227;8.13e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.00311)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.182)		AGACGGTGCTGAAGGGTCCCA	0.672000													8	13					0	0	0	0
CASZ1	54897	broad.mit.edu	37	1	10725203	10725203	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:10725203C>G	uc001aro.2	-	5	762	c.442G>C	c.(442-444)GAG>CAG	p.E148Q	CASZ1_uc001arp.1_Missense_Mutation_p.E148Q|CASZ1_uc009vmx.2_Missense_Mutation_p.E172Q	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	148					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		GAATCCTTCTCCTCCAGGGCA	0.682000													13	20					0	0	0	0
MTOR	2475	broad.mit.edu	37	1	11318648	11318648	+	Missense_Mutation	SNP	C	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:11318648C>A	uc001asd.2	-	3	286	c.165G>T	c.(163-165)ATG>ATT	p.M55I		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	55					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						CCTCTTGACTCATCTGCAAAA	0.428000													11	33					1.58986e-06	1.62126e-06	1	0
MAD2L2	10459	broad.mit.edu	37	1	11736195	11736195	+	Nonsense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:11736195G>C	uc001asp.2	-	6	523	c.335C>G	c.(334-336)TCA>TGA	p.S112*	MAD2L2_uc009vnc.2_Nonsense_Mutation_p.S112*|MAD2L2_uc001asq.3_Nonsense_Mutation_p.S112*	NM_006341	NP_006332	Q9UI95	MD2L2_HUMAN	MAD2 homolog	112	Mediates interaction with REV1 and REV3L and homodimerization.|HORMA.				cell division|DNA damage response, signal transduction resulting in transcription|double-strand break repair|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of mitotic anaphase-promoting complex activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription, DNA-dependent|regulation of cell growth|transcription, DNA-dependent	cytoplasm|nucleoplasm|spindle|zeta DNA polymerase complex	JUN kinase binding				0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.04e-06)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|Kidney(185;0.000733)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CAGCGAGTCTGAGCTGGGAGT	0.622000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					7	18					0	0	0	0
KIAA2013	90231	broad.mit.edu	37	1	11983377	11983377	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:11983377G>A	uc001atk.2	-	2	1397	c.1203C>T	c.(1201-1203)TTC>TTT	p.F401F	KIAA2013_uc001atl.1_Silent_p.F401F	NM_138346	NP_612355	Q8IYS2	K2013_HUMAN	hypothetical protein LOC90231 precursor	401	Extracellular (Potential).					integral to membrane				ovary(1)	1	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00149)|all_lung(284;0.00189)|Breast(348;0.00586)|Colorectal(325;0.0062)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0556)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.88e-06)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CGTGCCCGCTGAAGCAGTGAT	0.647000													16	39					0	0	0	0
VPS13D	55187	broad.mit.edu	37	1	12445358	12445358	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:12445358G>A	uc001atv.2	+	59	11551	c.11410G>A	c.(11410-11412)GAA>AAA	p.E3804K	VPS13D_uc001atw.2_Missense_Mutation_p.E3779K|VPS13D_uc001atx.2_Missense_Mutation_p.E2991K|VPS13D_uc009vnl.2_RNA	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3803					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CCGTTCATATGAAGTGGATGA	0.373000													9	24					0	0	0	0
TMEM51	55092	broad.mit.edu	37	1	15546088	15546088	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:15546088G>A	uc001avw.3	+	4	1130	c.611G>A	c.(610-612)CGA>CAA	p.R204Q	TMEM51_uc010obk.1_Missense_Mutation_p.R204Q|TMEM51_uc001avz.2_3'UTR|TMEM51_uc001avy.2_Missense_Mutation_p.R204Q|TMEM51_uc001avx.2_Missense_Mutation_p.R204Q	NM_001136216	NP_001129688	Q9NW97	TMM51_HUMAN	transmembrane protein 51	204						integral to membrane					0		Renal(390;0.00145)|Breast(348;0.00186)|Colorectal(325;0.00215)|all_lung(284;0.00459)|Lung NSC(340;0.0104)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;2.07e-06)|COAD - Colon adenocarcinoma(227;7.14e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000175)|KIRC - Kidney renal clear cell carcinoma(229;0.00141)|STAD - Stomach adenocarcinoma(313;0.00644)|READ - Rectum adenocarcinoma(331;0.0751)		CTGAAAGTTCGAAGGATTAAA	0.537000													17	32					0	0	0	0
ZBTB17	7709	broad.mit.edu	37	1	16269653	16269653	+	Silent	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:16269653G>T	uc001axl.3	-	13	1973	c.1734C>A	c.(1732-1734)CGC>CGA	p.R578R	ZBTB17_uc010obq.1_Silent_p.R495R|ZBTB17_uc010obr.1_Silent_p.R578R|ZBTB17_uc010obs.1_Silent_p.R502R	NM_003443	NP_003434	Q13105	ZBT17_HUMAN	zinc finger and BTB domain containing 17	578	C2H2-type 10.				negative regulation of cell cycle	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|Colorectal(212;4.12e-07)|COAD - Colon adenocarcinoma(227;2.43e-05)|BRCA - Breast invasive adenocarcinoma(304;9.97e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0649)		TGTCGTGGTGGCGAATATGAT	0.597000													24	85					6.12954e-19	6.42211e-19	1	0
CROCC	9696	broad.mit.edu	37	1	17249276	17249276	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:17249276C>G	uc001azt.2	+	2	248	c.179C>G	c.(178-180)TCC>TGC	p.S60C	CROCC_uc009voy.1_Intron|CROCC_uc009voz.1_5'UTR	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	60					cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		CGCAACCTCTCCCAGCCTGAG	0.612000													28	100					0	0	0	0
KIAA0090	23065	broad.mit.edu	37	1	19559127	19559127	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:19559127C>T	uc001bbo.2	-	15	1816	c.1773G>A	c.(1771-1773)GTG>GTA	p.V591V	KIAA0090_uc001bbp.2_Silent_p.V590V|KIAA0090_uc001bbq.2_Silent_p.V590V|KIAA0090_uc001bbr.2_Silent_p.V569V	NM_015047	NP_055862	Q8N766	K0090_HUMAN	hypothetical protein LOC23065 precursor	591	Extracellular (Potential).					integral to membrane	protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|Breast(348;0.00366)|all_lung(284;0.00519)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;3.84e-05)|Kidney(64;0.000191)|KIRC - Kidney renal clear cell carcinoma(64;0.00274)|GBM - Glioblastoma multiforme(114;0.005)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0656)		CCTTGTCCTTCACCAGCAGGG	0.483000													39	111					0	0	0	0
CDA	978	broad.mit.edu	37	1	20915548	20915548	+	Translation_Start_Site	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:20915548C>G	uc001bdk.2	+	1	105	c.-74C>G	c.(-76--72)ATCGT>ATGGT		CDA_uc001bdl.2_RNA|CDA_uc009vpv.2_RNA	NM_001785	NP_001776	P32320	CDD_HUMAN	cytidine deaminase						cell surface receptor linked signaling pathway|cytosine metabolic process|negative regulation of cell growth|negative regulation of nucleotide metabolic process|protein homotetramerization|pyrimidine nucleoside salvage	cytosol|extracellular region	cytidine deaminase activity|nucleoside binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Lung NSC(340;1.75e-08)|all_lung(284;5.99e-08)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|GBM - Glioblastoma multiforme(114;1.06e-08)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000148)|Kidney(64;0.000184)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.199)	Azacitidine(DB00928)|Capecitabine(DB01101)|Cytarabine(DB00987)|Gemcitabine(DB00441)	GAGCTGCAATCGTGTCTGGGG	0.662000													9	22					0	0	0	0
LDLRAD2	401944	broad.mit.edu	37	1	22142484	22142484	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:22142484C>T	uc001bfg.1	+	3	747	c.560C>T	c.(559-561)TCA>TTA	p.S187L		NM_001013693	NP_001013715	Q5SZI1	LRAD2_HUMAN	low density lipoprotein receptor class A domain	187	Extracellular (Potential).|LDL-receptor class A.					integral to membrane	receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.00166)|all_lung(284;0.00172)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;5.2e-26)|COAD - Colon adenocarcinoma(152;1.13e-05)|GBM - Glioblastoma multiforme(114;1.36e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000544)|KIRC - Kidney renal clear cell carcinoma(1967;0.00598)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.197)		TGCATCCCCTCAAGCCTCGTG	0.627000													18	53					0	0	0	0
HSPG2	3339	broad.mit.edu	37	1	22175513	22175513	+	Silent	SNP	C	G	G	rs146046708		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:22175513C>G	uc001bfj.2	-	58	7498	c.7458G>C	c.(7456-7458)TCG>TCC	p.S2486S	HSPG2_uc009vqd.2_Silent_p.S2487S	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	2486	Ig-like C2-type 10.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GGCGTAGCCTCGAGCCATGCA	0.647000													25	67					0	0	0	0
CNKSR1	10256	broad.mit.edu	37	1	26510743	26510743	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:26510743C>T	uc001bln.3	+	11	1044	c.986C>T	c.(985-987)TCA>TTA	p.S329L	CNKSR1_uc010oex.1_RNA|CNKSR1_uc001blm.3_Missense_Mutation_p.S322L|CNKSR1_uc009vsd.2_Missense_Mutation_p.S64L|CNKSR1_uc009vse.2_Missense_Mutation_p.S64L|CNKSR1_uc001blo.2_Missense_Mutation_p.S64L	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	329	Pro-rich.				Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		GACCTGTCTTCAAACCCCAGT	0.622000													41	140					0	0	0	0
SESN2	83667	broad.mit.edu	37	1	28599970	28599970	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:28599970G>A	uc001bps.2	+	6	1205	c.852G>A	c.(850-852)GAG>GAA	p.E284E		NM_031459	NP_113647	P58004	SESN2_HUMAN	sestrin 2	284					cell cycle arrest	cytoplasm|nucleus				skin(3)|ovary(2)|pancreas(1)|lung(1)	7		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;4.76e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;2.98e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|READ - Rectum adenocarcinoma(331;0.0649)		AGGAGATGGAGAGCCGCTTTG	0.632000													3	9					0	0	0	0
COL16A1	1307	broad.mit.edu	37	1	32158237	32158237	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:32158237C>G	uc001btk.1	-	15	1485	c.1120G>C	c.(1120-1122)GAA>CAA	p.E374Q	COL16A1_uc001btj.1_Missense_Mutation_p.E203Q|COL16A1_uc001btl.3_Missense_Mutation_p.E374Q	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	374	Nonhelical region 10 (NC10).				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		TTCGGGCCTTCTGCACACTGA	0.642000													12	31					0	0	0	0
BAI2	576	broad.mit.edu	37	1	32206008	32206008	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:32206008C>T	uc001btn.2	-	12	2283	c.1929G>A	c.(1927-1929)CTG>CTA	p.L643L	BAI2_uc010ogo.1_Silent_p.L285L|BAI2_uc010ogp.1_Silent_p.L576L|BAI2_uc010ogq.1_Silent_p.L643L|BAI2_uc001bto.2_Silent_p.L643L|BAI2_uc001btq.1_Silent_p.L576L|BAI2_uc010ogr.1_Intron	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	643	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		TGACATTCCTCAGAATGTCCA	0.612000													9	21					0	0	0	0
SPOCD1	90853	broad.mit.edu	37	1	32257955	32257955	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:32257955C>T	uc001bts.1	-	15	2881	c.2823G>A	c.(2821-2823)CAG>CAA	p.Q941Q	SPOCD1_uc001btr.1_Silent_p.Q29Q|SPOCD1_uc001btt.2_Silent_p.Q246Q|SPOCD1_uc001btu.2_Silent_p.Q941Q|SPOCD1_uc001btv.2_Silent_p.Q434Q	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	941	SPOC.				transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		GGCGGCAGTTCTGGGTGTCCC	0.647000													8	23					0	0	0	0
TXLNA	200081	broad.mit.edu	37	1	32660619	32660619	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:32660619G>C	uc001bui.2	+	11	1529	c.1464G>C	c.(1462-1464)CTG>CTC	p.L488L	TXLNA_uc001buj.2_Silent_p.L488L	NM_175852	NP_787048	P40222	TXLNA_HUMAN	taxilin	488	Potential.				cell proliferation|exocytosis	cytoplasm|extracellular region	cytokine activity|high molecular weight B cell growth factor receptor binding			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				TACAGGACCTGAGTGCTGGTG	0.627000													12	34					0	0	0	0
YARS	8565	broad.mit.edu	37	1	33272155	33272155	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:33272155C>G	uc001bvy.1	-	4	1226	c.438G>C	c.(436-438)AAG>AAC	p.K146N		NM_003680	NP_003671	P54577	SYYC_HUMAN	tyrosyl-tRNA synthetase	146					apoptosis|tyrosyl-tRNA aminoacylation	cytosol|extracellular space|nucleus|soluble fraction	ATP binding|interleukin-8 receptor binding|signal transducer activity|tRNA binding|tyrosine-tRNA ligase activity			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)			L-Tyrosine(DB00135)	CTCCAGCCTTCTTGGAATCGT	0.547000													40	93					0	0	0	0
CSMD2	114784	broad.mit.edu	37	1	34008457	34008457	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:34008457C>T	uc001bxn.1	-	57	8737	c.8708G>A	c.(8707-8709)CGA>CAA	p.R2903Q	CSMD2_uc001bxm.1_Missense_Mutation_p.R3047Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2903	Sushi 21.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GAACACAACTCGGGCATTACT	0.517000													11	30					0	0	0	0
UTP11L	51118	broad.mit.edu	37	1	38478530	38478530	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:38478530G>A	uc001ccn.3	+	1	147	c.56G>A	c.(55-57)CGA>CAA	p.R19Q	UTP11L_uc009vvm.2_5'UTR|UTP11L_uc010oil.1_RNA	NM_016037	NP_057121	Q9Y3A2	UTP11_HUMAN	UTP11-like, U3 small nucleolar	19					induction of apoptosis|nerve growth factor receptor signaling pathway|nervous system development|rRNA processing	cytoplasm|extracellular space|nucleolus|small-subunit processome	protein binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				CACAGAGAGCGAAGCCAGGTA	0.612000													43	74					0	0	0	0
C1orf210	149466	broad.mit.edu	37	1	43748554	43748554	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:43748554C>T	uc001cit.3	-	3	478	c.244G>A	c.(244-246)GAA>AAA	p.E82K		NM_182517	NP_872323	Q8IVY1	CA210_HUMAN	hypothetical protein LOC149466	82	Cytoplasmic (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				TCCTCATCTTCAGCCACCTGT	0.607000													21	60					0	0	0	0
KIAA0467	23334	broad.mit.edu	37	1	43895744	43895744	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:43895744C>T	uc001cjk.1	+	15	2136	c.1674C>T	c.(1672-1674)TTC>TTT	p.F558F		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	1457						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCCACTACTTCTTCTATTGCC	0.532000													20	64					0	0	0	0
PTPRF	5792	broad.mit.edu	37	1	44056897	44056897	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:44056897G>A	uc001cjr.2	+	9	1544	c.1204G>A	c.(1204-1206)GAG>AAG	p.E402K	PTPRF_uc001cjs.2_Missense_Mutation_p.E402K|PTPRF_uc001cju.2_5'UTR|PTPRF_uc009vwt.2_5'UTR|PTPRF_uc001cjv.2_5'UTR	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	402	Extracellular (Potential).|Fibronectin type-III 1.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GCCGCCCAGCGAGGCAGTGCG	0.697000													3	10					0	0	0	0
LEPR	3953	broad.mit.edu	37	1	66067149	66067149	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:66067149G>A	uc001dci.2	+	9	1271	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	LEPR_uc001dcg.2_Missense_Mutation_p.E357K|LEPR_uc001dch.2_Missense_Mutation_p.E357K|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.E357K|LEPR_uc001dck.2_Missense_Mutation_p.E357K	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	357	Extracellular (Potential).|Ig-like.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CTATAAGAAGGAAAACAAGAT	0.358000													12	33					0	0	0	0
IL12RB2	3595	broad.mit.edu	37	1	67833595	67833595	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:67833595C>G	uc001ddu.2	+	10	1986	c.1346C>G	c.(1345-1347)TCT>TGT	p.S449C	IL12RB2_uc010oqi.1_Missense_Mutation_p.S449C|IL12RB2_uc010oqj.1_Missense_Mutation_p.S449C|IL12RB2_uc010oqk.1_RNA|IL12RB2_uc010oql.1_Missense_Mutation_p.S449C|IL12RB2_uc010oqm.1_Missense_Mutation_p.S449C|IL12RB2_uc010oqn.1_RNA	NM_001559	NP_001550	Q99665	I12R2_HUMAN	interleukin 12 receptor, beta 2 precursor	449	Fibronectin type-III 4.|Extracellular (Potential).				positive regulation of cell proliferation|positive regulation of interferon-gamma production	integral to plasma membrane	cytokine receptor activity			ovary(2)|central_nervous_system(1)	3						AAAGATCCCTCTGCTGTTCAG	0.557000													33	61					0	0	0	0
TNNI3K	51086	broad.mit.edu	37	1	74737282	74737282	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:74737282G>A	uc001dgf.1	+	5	385	c.334G>A	c.(334-336)GAT>AAT	p.D112N	TNNI3K_uc001dgc.1_Missense_Mutation_p.D213N|TNNI3K_uc001dgd.2_Missense_Mutation_p.D213N|TNNI3K_uc001dge.1_Missense_Mutation_p.D213N	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	112	ANK 2.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						TTCCTTACAGGATAATGCAGA	0.428000													43	145					0	0	0	0
COL24A1	255631	broad.mit.edu	37	1	86591780	86591780	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:86591780G>A	uc001dlj.2	-	3	281	c.239C>T	c.(238-240)TCA>TTA	p.S80L	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Missense_Mutation_p.S80L	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	80	TSP N-terminal.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		AATGACTCCTGATTCTGTTAA	0.438000													14	49					0	0	0	0
GBP1	2633	broad.mit.edu	37	1	89523838	89523838	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:89523838G>C	uc001dmx.2	-	6	931	c.711C>G	c.(709-711)GTC>GTG	p.V237V		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	237					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		GCCGATCAAAGACAAAGCATT	0.423000													44	130					0	0	0	0
BRDT	676	broad.mit.edu	37	1	92469996	92469996	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:92469996C>T	uc001dok.3	+	17	2763	c.2414C>T	c.(2413-2415)TCA>TTA	p.S805L	BRDT_uc001dol.3_Missense_Mutation_p.S805L|BRDT_uc010osz.1_Missense_Mutation_p.S809L|BRDT_uc009wdf.2_Missense_Mutation_p.S732L|BRDT_uc010ota.1_Missense_Mutation_p.S759L|BRDT_uc010otb.1_Missense_Mutation_p.S759L|BRDT_uc001dom.3_Missense_Mutation_p.S805L	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	805					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		AATGCAGATTCATGGAAAAGT	0.328000													17	59					0	0	0	0
SASS6	163786	broad.mit.edu	37	1	100551111	100551111	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:100551111C>T	uc001dsu.2	-	16	1989	c.1848G>A	c.(1846-1848)CAG>CAA	p.Q616Q	SASS6_uc009wdz.2_Silent_p.Q449Q	NM_194292	NP_919268	Q6UVJ0	SAS6_HUMAN	spindle assembly abnormal protein 6	616					centriole replication	centriole				upper_aerodigestive_tract(1)|ovary(1)	2		all_epithelial(167;4.58e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.085)|all cancers(265;0.139)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.197)		TAAATAGGTTCTGGCTGAGTC	0.333000													27	51					0	0	0	0
PRMT6	55170	broad.mit.edu	37	1	107599827	107599827	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:107599827G>T	uc010ous.1	+	1	561	c.490G>T	c.(490-492)GAG>TAG	p.E164*		NM_018137	NP_060607	Q96LA8	ANM6_HUMAN	protein arginine methyltransferase 6	164					base-excision repair|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone binding|histone methyltransferase activity (H2A-R3 specific)|histone methyltransferase activity (H3-R2 specific)|histone methyltransferase activity (H4-R3 specific)|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity				0		all_epithelial(167;0.000429)|all_lung(203;0.00122)|Lung NSC(277;0.00185)		Lung(183;0.0305)|Epithelial(280;0.0765)|Colorectal(144;0.0998)|all cancers(265;0.14)|LUSC - Lung squamous cell carcinoma(189;0.173)|BRCA - Breast invasive adenocarcinoma(282;0.242)		ACTCCTGCACGAGTCCATGCT	0.647000													15	71					4.14922e-12	4.27584e-12	1	0
HBXIP	10542	broad.mit.edu	37	1	110950253	110950253	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:110950253G>A	uc001dzr.2	-	1	294	c.236C>T	c.(235-237)TCG>TTG	p.S79L		NM_006402	NP_006393	O43504	HBXIP_HUMAN	hepatitis B virus x-interacting protein	Error:Variant_position_missing_in_O43504_after_alignment					anti-apoptosis|negative regulation of caspase activity|response to virus|viral genome replication	cytosol	protein binding			large_intestine(1)|ovary(1)|pancreas(1)	3		all_cancers(81;4.08e-06)|all_epithelial(167;4.38e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0237)|all cancers(265;0.0675)|Epithelial(280;0.0732)|Colorectal(144;0.102)|LUSC - Lung squamous cell carcinoma(189;0.134)		CCCACCCACCGACCACTCCGG	0.657000													14	33					0	0	0	0
KCNA2	3737	broad.mit.edu	37	1	111146078	111146078	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:111146078C>T	uc001dzu.2	-	2	1823	c.1327G>A	c.(1327-1329)GAC>AAC	p.D443N	KCNA2_uc009wfv.1_Intron|KCNA2_uc009wfw.2_Missense_Mutation_p.D443N	NM_004974	NP_004965	P16389	KCNA2_HUMAN	potassium voltage-gated channel, shaker-related	443						juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(1)	1		all_cancers(81;5.55e-06)|all_epithelial(167;1.87e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Colorectal(144;0.00878)|Lung(183;0.0234)|all cancers(265;0.0492)|Epithelial(280;0.0529)|COAD - Colon adenocarcinoma(174;0.131)|LUSC - Lung squamous cell carcinoma(189;0.133)|READ - Rectum adenocarcinoma(129;0.191)		TTCTTTAGGTCAGGGGAGGAT	0.448000													25	76					0	0	0	0
C1orf103	55791	broad.mit.edu	37	1	111494617	111494617	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:111494617G>C	uc001eaa.2	-	2	1145	c.889C>G	c.(889-891)CTA>GTA	p.L297V	C1orf103_uc001dzz.2_Intron|C1orf103_uc001eab.2_Intron|C1orf103_uc001eac.1_Intron	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	297					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		AAAGGCTGTAGATTATCTTGG	0.353000													20	52					0	0	0	0
VANGL1	81839	broad.mit.edu	37	1	116227957	116227957	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:116227957C>T	uc001efv.1	+	7	1394	c.1123C>T	c.(1123-1125)CTC>TTC	p.L375F	VANGL1_uc009wgy.1_Missense_Mutation_p.L373F	NM_138959	NP_620409	Q8TAA9	VANG1_HUMAN	vang-like 1	375	Cytoplasmic (Potential).				multicellular organismal development	integral to membrane	protein binding			central_nervous_system(1)	1	Lung SC(450;0.211)	all_cancers(81;1.24e-06)|all_epithelial(167;1.02e-06)|all_lung(203;7.95e-06)|Lung NSC(69;4.97e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		CATTCAGCGTCTCCAGGCTGA	0.582000													7	30					0	0	0	0
TRIM45	80263	broad.mit.edu	37	1	117659368	117659368	+	Splice_Site	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:117659368C>T	uc001egz.2	-	3	1811	c.1223_splice	c.e3-1	p.D408_splice	TRIM45_uc009whe.2_Splice_Site_p.D390_splice|TRIM45_uc001eha.2_Splice_Site_p.D304_splice	NM_025188	NP_079464	Q9H8W5	TRI45_HUMAN	tripartite motif-containing 45 isoform 1							cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)	1	Lung SC(450;0.225)	all_cancers(81;0.000979)|all_lung(203;7.65e-05)|all_epithelial(167;0.000134)|Lung NSC(69;0.000389)		Lung(183;0.0537)|Colorectal(144;0.172)|LUSC - Lung squamous cell carcinoma(189;0.187)		CTGTGGAGGTCTGAAAAAGAT	0.483000													12	33					0	0	0	0
ANKRD35	148741	broad.mit.edu	37	1	145562415	145562415	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:145562415C>T	uc001eob.1	+	10	2211	c.2103C>T	c.(2101-2103)CTC>CTT	p.L701L	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Silent_p.L544L	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	701										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCAGCGGTCTCCGAGGGCTGT	0.632000													20	16					0	0	0	0
PDZK1	5174	broad.mit.edu	37	1	145762294	145762294	+	Missense_Mutation	SNP	G	C	C	rs2306523		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:145762294G>C	uc001eon.1	+	9	1568	c.1471G>C	c.(1471-1473)GAG>CAG	p.E491Q	NBPF10_uc001emp.3_Intron|PDZK1_uc001eoo.1_Missense_Mutation_p.E491Q|PDZK1_uc010oza.1_Missense_Mutation_p.E380Q	NM_002614	NP_002605	Q5T2W1	NHRF3_HUMAN	PDZ domain containing 1	491					carnitine transport|cell proliferation|drug transport|positive regulation of ion transmembrane transport	brush border membrane|cytoplasm	PDZ domain binding|transporter activity				0	all_hematologic(18;0.00473)|Acute lymphoblastic leukemia(18;0.0786)		KIRC - Kidney renal clear cell carcinoma(6;0.0764)|Kidney(552;0.118)|Colorectal(543;0.229)			AATAGTGGTGGAGTCAAACCA	0.448000													21	41					0	0	0	0
CA14	23632	broad.mit.edu	37	1	150236243	150236243	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:150236243C>T	uc001etx.2	+	10	1222	c.913C>T	c.(913-915)CTC>TTC	p.L305F		NM_012113	NP_036245	Q9ULX7	CAH14_HUMAN	carbonic anhydrase XIV precursor	305	Helical; (Potential).					integral to membrane	carbonate dehydratase activity|metal ion binding			ovary(1)	1	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCTCTGCCTTCTCCTGGCTGT	0.383000													48	143					0	0	0	0
SETDB1	9869	broad.mit.edu	37	1	150933151	150933151	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:150933151G>C	uc001evu.2	+	16	2803	c.2613G>C	c.(2611-2613)GAG>GAC	p.E871D	SETDB1_uc001evv.2_Missense_Mutation_p.E871D|SETDB1_uc009wmg.1_Missense_Mutation_p.E871D	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	871	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			AAGGATATGAGAGTGATGCCC	0.488000													27	54					0	0	0	0
FLG	2312	broad.mit.edu	37	1	152277860	152277860	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:152277860C>G	uc001ezu.1	-	3	9538	c.9502G>C	c.(9502-9504)GAG>CAG	p.E3168Q		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3168	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATTGTTCCTCATTACGTGTT	0.552000									Ichthyosis				83	283					0	0	0	0
LCE1F	353137	broad.mit.edu	37	1	152748864	152748864	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:152748864G>T	uc010pdv.1	+	1	17	c.17G>T	c.(16-18)AGC>ATC	p.S6I		NM_178354	NP_848131	Q5T754	LCE1F_HUMAN	late cornified envelope 1F	6					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGCCAGCAGAGCCAGCAGCAG	0.353000													20	86					3.10358e-05	3.14659e-05	1	0
UBAP2L	9898	broad.mit.edu	37	1	154223770	154223770	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:154223770G>A	uc001fep.3	+	13	1634	c.1467G>A	c.(1465-1467)AAG>AAA	p.K489K	UBAP2L_uc009wot.2_Silent_p.K489K|UBAP2L_uc010pek.1_Silent_p.K481K|UBAP2L_uc010pel.1_Silent_p.K499K|UBAP2L_uc010pen.1_Silent_p.K403K	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	489					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			AACAGCAGAAGAAAAAAGCCT	0.463000													7	37					0	0	0	0
ADAR	103	broad.mit.edu	37	1	154561029	154561029	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:154561029G>A	uc001ffh.2	-	10	3083	c.2883C>T	c.(2881-2883)ATC>ATT	p.I961I	ADAR_uc001ffj.2_Silent_p.I916I|ADAR_uc001ffi.2_Silent_p.I935I|ADAR_uc001ffk.2_Silent_p.I666I	NM_001111	NP_001102	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific isoform a	961	A to I editase.				adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		GTACAGACCTGATATACAGAT	0.453000													30	75					0	0	0	0
KRTCAP2	200185	broad.mit.edu	37	1	155145307	155145307	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:155145307C>T	uc001fho.2	-	2	170	c.144G>A	c.(142-144)GGG>GGA	p.G48G	RAG1AP1_uc010pey.1_Intron|KRTCAP2_uc001fhp.1_Silent_p.G48G|TRIM46_uc009wpe.1_5'Flank|TRIM46_uc010pez.1_5'Flank|TRIM46_uc001fhq.2_5'Flank|TRIM46_uc001fhr.2_5'Flank|TRIM46_uc001fhs.1_5'Flank|TRIM46_uc001fht.1_5'Flank|TRIM46_uc010pfa.1_5'Flank|TRIM46_uc001fhu.1_5'Flank|TRIM46_uc009wpg.1_5'Flank|TRIM46_uc009wpf.2_5'Flank|TRIM46_uc001fhv.3_5'Flank|TRIM46_uc001fhw.1_5'Flank	NM_173852	NP_776251	Q8N6L1	KTAP2_HUMAN	keratinocyte associated protein 2	48						integral to membrane					0	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.18e-10)|all cancers(21;8.39e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			ACATCTGCATCCCAGCAAAGA	0.637000													20	59					0	0	0	0
OR10J1	26476	broad.mit.edu	37	1	159410406	159410406	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:159410406G>A	uc010piv.1	+	1	858	c.858G>A	c.(856-858)GTG>GTA	p.V286V	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	286	Helical; Name=7; (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					TGATCTCGGTGACCTACACTG	0.512000													27	96					0	0	0	0
ATP1A2	477	broad.mit.edu	37	1	160093059	160093059	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:160093059C>G	uc001fvc.2	+	4	366	c.234C>G	c.(232-234)CTC>CTG	p.L78L	ATP1A2_uc001fvb.2_Silent_p.L78L|ATP1A2_uc010piz.1_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	78	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CCAACGCCCTCACACCACCTC	0.632000													72	129					0	0	0	0
PEA15	8682	broad.mit.edu	37	1	160181451	160181451	+	Silent	SNP	C	T	T	rs146555291	byFrequency	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:160181451C>T	uc001fvk.2	+	2	307	c.117C>T	c.(115-117)ATC>ATT	p.I39I	uc001fvj.1_5'Flank|PEA15_uc001fvl.2_Silent_p.I60I|PEA15_uc001fvm.2_Intron	NM_003768	NP_003759	Q15121	PEA15_HUMAN	phosphoprotein enriched in astrocytes 15	39	DED.				anti-apoptosis|apoptosis|carbohydrate transport|negative regulation of glucose import	cytoplasm|microtubule associated complex	protein binding				0	all_cancers(52;3.11e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GTGAGGAGATCACTACTGGCA	0.547000													18	88					0	0	0	0
HSPA6	3310	broad.mit.edu	37	1	161496277	161496277	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:161496277C>T	uc001gap.2	+	2	2489	c.1829C>T	c.(1828-1830)TCC>TTC	p.S610F	HSPA6_uc001gaq.2_Missense_Mutation_p.S610F	NM_002155	NP_002146	P17066	HSP76_HUMAN	heat shock 70kDa protein 6 (HSP70B')	610					response to unfolded protein		ATP binding			skin(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			CCCATCTTCTCCAGGCTCTAT	0.622000													4	6					0	0	0	0
FCGR3B	2215	broad.mit.edu	37	1	161596169	161596169	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:161596169G>A	uc009wul.2	-	4	617	c.343C>T	c.(343-345)CGG>TGG	p.R115W		NM_000570	NP_000561	O75015	FCG3B_HUMAN	low affinity immunoglobulin gamma Fc region	115					immune response	anchored to membrane|extracellular region|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AACACCCACCGAGGGGCCTGG	0.557000													8	21					0	0	0	0
DUSP27	92235	broad.mit.edu	37	1	167097473	167097473	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:167097473G>A	uc001geb.1	+	5	3105	c.3105G>A	c.(3103-3105)GAG>GAA	p.E1035E		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	1035	Ser-rich.				protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CCCGAGAGGAGAGCCCAGAGC	0.592000													7	23					0	0	0	0
TNN	63923	broad.mit.edu	37	1	175049448	175049448	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:175049448G>C	uc001gkl.1	+	4	1047	c.934G>C	c.(934-936)GAG>CAG	p.E312Q	TNN_uc010pmx.1_Missense_Mutation_p.E312Q	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	312	Fibronectin type-III 1.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		AGTGCCCAAGGAGCAGCACAG	0.552000													22	49					0	0	0	0
IER5	51278	broad.mit.edu	37	1	181058848	181058848	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:181058848C>T	uc001got.3	+	1	1211	c.810C>T	c.(808-810)ATC>ATT	p.I270I		NM_016545	NP_057629	Q5VY09	IER5_HUMAN	immediate early response 5	270										pancreas(1)	1						CTAACCTCATCAGCATCTTCG	0.652000													19	21					0	0	0	0
GLT25D2	23127	broad.mit.edu	37	1	183907896	183907896	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:183907896C>T	uc001gqr.2	-	12	2252	c.1880G>A	c.(1879-1881)TGA>TAA	p.*627*	GLT25D2_uc010poj.1_Intron|GLT25D2_uc001gqp.2_Silent_p.*235*|GLT25D2_uc001gqq.2_Silent_p.*364*|GLT25D2_uc001gqs.2_Silent_p.*507*	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	627					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						AGGGAGCCTTCATAGCTCATC	0.507000													18	43					0	0	0	0
HMCN1	83872	broad.mit.edu	37	1	186056718	186056718	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:186056718G>A	uc001grq.1	+	60	9533	c.9304G>A	c.(9304-9306)GAG>AAG	p.E3102K		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3102	Ig-like C2-type 29.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GATGATAACAGAGTCTACTCA	0.428000													48	153					0	0	0	0
HMCN1	83872	broad.mit.edu	37	1	186089237	186089237	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:186089237G>A	uc001grq.1	+	80	12418	c.12189G>A	c.(12187-12189)CCG>CCA	p.P4063P		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4063	Ig-like C2-type 39.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CCCAGAACCCGGCTGGTACAG	0.448000													16	19					0	0	0	0
B3GALT2	8707	broad.mit.edu	37	1	193150607	193150607	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:193150607C>G	uc001gtc.3	-	2	801	c.86G>C	c.(85-87)GGA>GCA	p.G29A	CDC73_uc001gtb.2_Intron	NM_003783	NP_003774	O43825	B3GT2_HUMAN	UDP-Gal:betaGlcNAc beta	29	Helical; Signal-anchor for type II membrane protein; (Potential).				protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)	1						AGAAAGTACTCCAATAAGATG	0.423000													14	55					0	0	0	0
PHLDA3	23612	broad.mit.edu	37	1	201437683	201437683	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:201437683C>T	uc001gwq.2	-	1	617	c.232G>A	c.(232-234)GAA>AAA	p.E78K	PHLDA3_uc009wzx.2_5'UTR	NM_012396	NP_036528	Q9Y5J5	PHLA3_HUMAN	pleckstrin homology-like domain, family A,	78	PH.				anatomical structure morphogenesis|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|negative regulation of protein kinase B signaling cascade	cytoplasm|intracellular membrane-bounded organelle|plasma membrane	identical protein binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylinositol-5-phosphate binding				0						CCGCCCCCTTCGGTCACCAGC	0.667000													26	111					0	0	0	0
MOSC2	54996	broad.mit.edu	37	1	220936311	220936311	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:220936311G>A	uc001hmq.2	+	4	867	c.669G>A	c.(667-669)TTG>TTA	p.L223L	MOSC2_uc001hmr.2_Silent_p.L223L|MOSC2_uc009xdx.2_Silent_p.L223L	NM_017898	NP_060368	Q969Z3	MOSC2_HUMAN	MOCO sulphurase C-terminal domain containing 2	223	MOSC.					mitochondrial outer membrane|peroxisome	molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.00499)|all cancers(67;0.204)		TGGTAGATTTGAATACCAGGA	0.502000													41	38					0	0	0	0
NUP133	55746	broad.mit.edu	37	1	229580736	229580736	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:229580736C>T	uc001htn.2	-	25	3351	c.3259G>A	c.(3259-3261)GAT>AAT	p.D1087N		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	1087					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				TCTTTGCCATCAGAACTGGAC	0.308000													21	76					0	0	0	0
PGBD5	79605	broad.mit.edu	37	1	230473020	230473020	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:230473020C>T	uc010pwb.1	-	4	702	c.702G>A	c.(700-702)CTG>CTA	p.L234L	PGBD5_uc001htv.2_Silent_p.L333L	NM_024554	NP_078830	Q8N414	PGBD5_HUMAN	piggyBac transposable element derived 5	234						integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(184;0.0397)	Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;0.201)		CACCTTCCTTCAGGTGGACAT	0.572000													4	6					0	0	0	0
PGBD5	79605	broad.mit.edu	37	1	230492802	230492802	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:230492802G>A	uc010pwb.1	-	2	390	c.390C>T	c.(388-390)CTC>CTT	p.L130L	PGBD5_uc001htv.2_Silent_p.L229L	NM_024554	NP_078830	Q8N414	PGBD5_HUMAN	piggyBac transposable element derived 5	130						integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(184;0.0397)	Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;0.201)		TGACGAGGGCGAGGCTGCGGT	0.612000													22	25					0	0	0	0
EXOC8	149371	broad.mit.edu	37	1	231472342	231472342	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:231472342C>G	uc001huq.2	-	1	1237	c.1150G>C	c.(1150-1152)GAG>CAG	p.E384Q		NM_175876	NP_787072	Q8IYI6	EXOC8_HUMAN	exocyst complex 84-kDa subunit	384					exocytosis|protein transport	growth cone|nucleus	protein binding			skin(1)	1	Breast(184;0.0871)	all_cancers(173;0.151)|Prostate(94;0.183)				ACTCGCTCCTCCACTTTGGCC	0.517000													39	37					0	0	0	0
C1orf57	84284	broad.mit.edu	37	1	233091354	233091354	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:233091354C>T	uc001hvj.1	+	2	173	c.86C>T	c.(85-87)TCT>TTT	p.S29F	C1orf57_uc001hvi.2_Missense_Mutation_p.S29F|C1orf57_uc009xft.1_Intron	NM_032324	NP_115700	Q9BSD7	NTPCR_HUMAN	nucleoside-triphosphatase C1orf57	29							ATP binding|nucleoside-triphosphatase activity|nucleotide phosphatase activity|transferase activity				0		all_cancers(173;0.0818)|Prostate(94;0.137)				TTAAAATCCTCTGGTGTGCCT	0.393000													15	14					0	0	0	0
C1orf57	84284	broad.mit.edu	37	1	233105696	233105696	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:233105696C>T	uc001hvj.1	+	4	423	c.336C>T	c.(334-336)ATC>ATT	p.I112I	C1orf57_uc001hvi.2_Silent_p.I112I|C1orf57_uc009xft.1_Intron	NM_032324	NP_115700	Q9BSD7	NTPCR_HUMAN	nucleoside-triphosphatase C1orf57	112	ATP (Probable).						ATP binding|nucleoside-triphosphatase activity|nucleotide phosphatase activity|transferase activity				0		all_cancers(173;0.0818)|Prostate(94;0.137)				TGTGCGTCATCGATGAGATTG	0.507000													38	73					0	0	0	0
C1orf57	84284	broad.mit.edu	37	1	233105723	233105723	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:233105723C>T	uc001hvj.1	+	4	450	c.363C>T	c.(361-363)TTC>TTT	p.F121F	C1orf57_uc001hvi.2_Silent_p.F121F|C1orf57_uc009xft.1_Intron	NM_032324	NP_115700	Q9BSD7	NTPCR_HUMAN	nucleoside-triphosphatase C1orf57	121							ATP binding|nucleoside-triphosphatase activity|nucleotide phosphatase activity|transferase activity				0		all_cancers(173;0.0818)|Prostate(94;0.137)				TGGAGCTCTTCAGTCAGCTTT	0.512000													42	80					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237814789	237814789	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:237814789G>A	uc001hyl.1	+	51	7932	c.7812G>A	c.(7810-7812)AAG>AAA	p.K2604K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2604	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AACACGCAAAGATGCCTCTTA	0.323000													3	5					0	0	0	0
AHCTF1	25909	broad.mit.edu	37	1	247040556	247040556	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:247040556C>T	uc001ibu.1	-	21	2716	c.2709G>A	c.(2707-2709)TTG>TTA	p.L903L	AHCTF1_uc001ibv.1_Silent_p.L912L|AHCTF1_uc009xgs.1_5'UTR|AHCTF1_uc001ibw.1_5'Flank	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	903	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			CCTCTATATTCAACCTATTGC	0.358000													18	74					0	0	0	0
OR2B11	127623	broad.mit.edu	37	1	247614691	247614691	+	Silent	SNP	C	T	T	rs141488287		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:247614691C>T	uc010pyx.1	-	1	594	c.594G>A	c.(592-594)GTG>GTA	p.V198V		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	198	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			TGGTGTCATTCACAGCGGTGT	0.572000													17	25					0	0	0	0
OR2M7	391196	broad.mit.edu	37	1	248487312	248487312	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr1:248487312G>A	uc010pzk.1	-	1	559	c.559C>T	c.(559-561)CTC>TTC	p.L187F		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	187	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTGCATGAGAGGATTAGTAGG	0.423000													52	148					0	0	0	0
SFMBT2	57713	broad.mit.edu	37	10	7217983	7217983	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:7217983C>T	uc009xio.1	-	17	2044	c.1953G>A	c.(1951-1953)GAG>GAA	p.E651E	SFMBT2_uc001ijn.1_Silent_p.E651E|SFMBT2_uc010qay.1_Silent_p.E486E	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	651					regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						TGGAGCAGTTCTCTGGGCAGT	0.423000													37	110					0	0	0	0
ITIH5	80760	broad.mit.edu	37	10	7684025	7684025	+	Nonsense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:7684025G>C	uc001ijq.2	-	3	243	c.164C>G	c.(163-165)TCA>TGA	p.S55*	ITIH5_uc001ijr.1_Nonsense_Mutation_p.S55*	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	55	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						AGACTTCACTGAGAATTCTGT	0.423000													13	48					0	0	0	0
FAM188A	80013	broad.mit.edu	37	10	15828635	15828635	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:15828635C>T	uc001iod.1	-	13	1262	c.1041G>A	c.(1039-1041)ATG>ATA	p.M347I	FAM188A_uc001ioe.1_Missense_Mutation_p.M174I	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	347					apoptosis	nucleus	calcium ion binding			ovary(1)	1						ATTTATTCTTCATGAGATTTA	0.323000													12	30					0	0	0	0
GPR158	57512	broad.mit.edu	37	10	25887024	25887024	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:25887024C>T	uc001isj.2	+	11	2529	c.2469C>T	c.(2467-2469)CAC>CAT	p.H823H	GPR158_uc001isk.2_Silent_p.H198H	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	823	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CTTATGACCACGTGAGAGACC	0.498000													29	88					0	0	0	0
ARMC4	55130	broad.mit.edu	37	10	28250565	28250565	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:28250565G>A	uc009xky.2	-	10	1416	c.1318C>T	c.(1318-1320)CGT>TGT	p.R440C	ARMC4_uc010qds.1_5'UTR|ARMC4_uc010qdt.1_Missense_Mutation_p.R132C|ARMC4_uc001itz.2_Missense_Mutation_p.R440C|ARMC4_uc010qdu.1_Missense_Mutation_p.R132C	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	440							binding			ovary(4)|skin(2)	6						GCTTCCTGACGATGGTCAGGT	0.398000													16	30					0	0	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316127	30316127	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:30316127C>G	uc001iux.2	-	2	3009	c.2950G>C	c.(2950-2952)GAC>CAC	p.D984H	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.D846H|KIAA1462_uc009xle.1_Missense_Mutation_p.D984H	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	984										ovary(4)	4						GGTTTTGCGTCACTTGATCTT	0.527000													23	82					0	0	0	0
KIF5B	3799	broad.mit.edu	37	10	32324561	32324561	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:32324561C>T	uc001iwe.3	-	10	1321	c.851G>A	c.(850-852)AGA>AAA	p.R284K		NM_004521	NP_004512	P33176	KINH_HUMAN	kinesin family member 5B	284	Kinesin-motor.				stress granule disassembly|vesicle transport along microtubule	kinesin complex|microtubule|perinuclear region of cytoplasm|vesicle	ATP binding|microtubule binding|microtubule motor activity		KIF5B/ALK(4)	lung(4)|ovary(1)	5		Prostate(175;0.0137)				TTGAAGGATTCTTGTCATTTT	0.313000													8	23					0	0	0	0
PARD3	56288	broad.mit.edu	37	10	34408651	34408651	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:34408651C>T	uc010qej.1	-	24	3567	c.3567G>A	c.(3565-3567)GCG>GCA	p.A1189A	PARD3_uc010qek.1_Silent_p.A1186A|PARD3_uc010qel.1_Silent_p.A1152A|PARD3_uc010qem.1_Silent_p.A1173A|PARD3_uc010qen.1_Silent_p.A1143A|PARD3_uc010qeo.1_Silent_p.A1106A|PARD3_uc010qep.1_Silent_p.A1099A|PARD3_uc010qeq.1_Silent_p.A1077A	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	1189					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				CGCTCTGCGTCGCCGGCCGTG	0.587000													9	11					0	0	0	0
OGDHL	55753	broad.mit.edu	37	10	50944441	50944441	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:50944441C>G	uc001jie.2	-	21	2858	c.2716G>C	c.(2716-2718)GAC>CAC	p.D906H	OGDHL_uc009xog.2_Missense_Mutation_p.D933H|OGDHL_uc010qgt.1_Missense_Mutation_p.D849H|OGDHL_uc010qgu.1_Missense_Mutation_p.D697H	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	906					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TCCTCCAGGTCCTGGCTGCTC	0.627000													34	102					0	0	0	0
PCDH15	65217	broad.mit.edu	37	10	55663095	55663095	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:55663095C>A	uc001jju.1	-	26	3804	c.3409G>T	c.(3409-3411)GAA>TAA	p.E1137*	PCDH15_uc010qhq.1_Nonsense_Mutation_p.E1142*|PCDH15_uc010qhr.1_Nonsense_Mutation_p.E1137*|PCDH15_uc010qhs.1_Nonsense_Mutation_p.E1149*|PCDH15_uc010qht.1_Nonsense_Mutation_p.E1144*|PCDH15_uc010qhu.1_Nonsense_Mutation_p.E1137*|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Nonsense_Mutation_p.E1137*|PCDH15_uc010qhw.1_Nonsense_Mutation_p.E1100*|PCDH15_uc010qhx.1_Nonsense_Mutation_p.E1066*|PCDH15_uc010qhy.1_Nonsense_Mutation_p.E1142*|PCDH15_uc010qhz.1_Nonsense_Mutation_p.E1137*|PCDH15_uc010qia.1_Nonsense_Mutation_p.E1115*|PCDH15_uc010qib.1_Nonsense_Mutation_p.E1115*	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1137	Cadherin 10.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGATTATTTTCATCCTGAATC	0.388000										HNSCC(58;0.16)			13	36					7.93312e-07	8.09916e-07	1	0
PCDH15	65217	broad.mit.edu	37	10	56287638	56287638	+	Splice_Site	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:56287638C>G	uc001jju.1	-	3	487	c.92_splice	c.e3-1	p.D31_splice	PCDH15_uc010qhq.1_Splice_Site_p.D36_splice|PCDH15_uc010qhr.1_Splice_Site_p.D31_splice|PCDH15_uc010qhs.1_Splice_Site_p.D36_splice|PCDH15_uc010qht.1_Splice_Site_p.D31_splice|PCDH15_uc010qhu.1_Splice_Site_p.D31_splice|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Splice_Site_p.D31_splice|PCDH15_uc010qhw.1_Splice_Site_p.D31_splice|PCDH15_uc010qhx.1_Splice_Site_p.D31_splice|PCDH15_uc010qhy.1_Splice_Site_p.D36_splice|PCDH15_uc010qhz.1_Splice_Site_p.D31_splice|PCDH15_uc010qia.1_Intron|PCDH15_uc010qib.1_Intron|PCDH15_uc001jjw.2_Splice_Site_p.D31_splice	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor						equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				AGTTTGCAATCTAAAGAGAGA	0.328000										HNSCC(58;0.16)			15	29					0	0	0	0
TTC18	118491	broad.mit.edu	37	10	75090940	75090940	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:75090940C>T	uc009xrc.2	-	9	1103	c.982G>A	c.(982-984)GAA>AAA	p.E328K	TTC18_uc001jty.2_Missense_Mutation_p.E328K|TTC18_uc009xrd.1_Missense_Mutation_p.E136K	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	328							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					TTTACCTTTTCAGTTTTGCCA	0.403000													7	11					0	0	0	0
VCL	7414	broad.mit.edu	37	10	75868828	75868828	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:75868828G>A	uc001jwd.2	+	18	2753	c.2659G>A	c.(2659-2661)GAG>AAG	p.E887K	VCL_uc009xrr.2_Missense_Mutation_p.E636K|VCL_uc010qky.1_Missense_Mutation_p.E794K|VCL_uc001jwe.2_Missense_Mutation_p.E887K|VCL_uc010qkz.1_Missense_Mutation_p.E148K	NM_014000	NP_054706	P18206	VINC_HUMAN	vinculin isoform meta-VCL	887	C-terminal tail.				adherens junction assembly|apical junction assembly|cell-matrix adhesion|cellular component movement|epithelial cell-cell adhesion|lamellipodium assembly|morphogenesis of an epithelium|muscle contraction|negative regulation of cell migration|platelet activation|platelet degranulation|protein localization at cell surface	costamere|cytosol|extracellular region|focal adhesion	actin binding|alpha-catenin binding|beta-catenin binding|beta-dystroglycan binding|cadherin binding|structural molecule activity		VCL/ALK(4)	kidney(4)|ovary(1)|central_nervous_system(1)	6	Prostate(51;0.0112)					AGAGTTCCCTGAGCAGAAGGC	0.547000													15	36					0	0	0	0
POLR3A	11128	broad.mit.edu	37	10	79785418	79785418	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:79785418G>A	uc001jzn.2	-	3	374	c.280C>T	c.(280-282)CAT>TAT	p.H94Y		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	94					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			TACCCTACATGAAAACACGGC	0.483000													11	38					0	0	0	0
FAM190B	54462	broad.mit.edu	37	10	86259714	86259714	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:86259714G>A	uc001kdh.1	+	10	2603	c.2409G>A	c.(2407-2409)CAG>CAA	p.Q803Q	FAM190B_uc010qmd.1_Intron|FAM190B_uc001kdi.1_Intron|FAM190B_uc010qme.1_Silent_p.Q230Q	NM_018999	NP_061872	Q9H7U1	F190B_HUMAN	granule cell antiserum positive 14	803										ovary(3)|skin(1)	4						ACCGCAGACAGAGTGAGTCTG	0.567000													37	69					0	0	0	0
GLUD1	2746	broad.mit.edu	37	10	88819941	88819941	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:88819941C>T	uc001keh.2	-	9	1352	c.1255G>A	c.(1255-1257)GAG>AAG	p.E419K	GLUD1_uc001keg.2_Missense_Mutation_p.E252K|GLUD1_uc010qmp.1_Missense_Mutation_p.E286K	NM_005271	NP_005262	P00367	DHE3_HUMAN	glutamate dehydrogenase 1 precursor	419					glutamate biosynthetic process|glutamate catabolic process|positive regulation of insulin secretion	mitochondrial matrix	ADP binding|ATP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|identical protein binding|leucine binding|NAD+ binding				0					L-Glutamic Acid(DB00142)|NADH(DB00157)	ATGTTTCTCTCCAGGAAGATC	0.398000													16	60					0	0	0	0
PPP1R3C	5507	broad.mit.edu	37	10	93389941	93389941	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:93389941C>G	uc001kho.2	-	2	829	c.697G>C	c.(697-699)GAG>CAG	p.E233Q		NM_005398	NP_005389	Q9UQK1	PPR3C_HUMAN	protein phosphatase 1, regulatory (inhibitor)	233	Interaction with EPM2A.|CBM21.						protein serine/threonine phosphatase activity			breast(1)	1		Colorectal(252;0.235)				ATGCAGAACTCAATTTTCTGC	0.403000													25	58					0	0	0	0
TNKS2	80351	broad.mit.edu	37	10	93614860	93614860	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:93614860G>C	uc001khp.2	+	22	3187	c.2890G>C	c.(2890-2892)GAG>CAG	p.E964Q		NM_025235	NP_079511	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related	964	PARP catalytic.				positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding			kidney(3)|skin(3)|ovary(1)|lung(1)	8		Colorectal(252;0.162)				TGATGATAAAGAGTTTCAGTC	0.338000													16	29					0	0	0	0
IDE	3416	broad.mit.edu	37	10	94291603	94291603	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:94291603G>A	uc001kia.2	-	4	639	c.563C>T	c.(562-564)TCA>TTA	p.S188L		NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	188					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTCATGTTCTGAATCAACTGC	0.403000													14	23					0	0	0	0
ARHGAP19	84986	broad.mit.edu	37	10	99025847	99025847	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:99025847G>C	uc001knb.2	-	2	121	c.92C>G	c.(91-93)TCT>TGT	p.S31C	ARHGAP19_uc001kmy.2_RNA|ARHGAP19_uc001kna.2_Missense_Mutation_p.S22C|ARHGAP19_uc009xvi.2_RNA|ARHGAP19_uc009xvj.2_Missense_Mutation_p.S31C|ARHGAP19_uc009xvk.2_Intron	NM_032900	NP_116289	Q14CB8	RHG19_HUMAN	Rho GTPase activating protein 19	31					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	GTPase activator activity				0		Colorectal(252;0.0854)		Epithelial(162;7.65e-09)|all cancers(201;4.49e-07)		TCGAAGGGAAGAATCATTGCA	0.393000													9	51					0	0	0	0
EXOSC1	51013	broad.mit.edu	37	10	99205728	99205728	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:99205728C>T	uc001kni.2	-	1	41	c.15G>A	c.(13-15)GTG>GTA	p.V5V	EXOSC1_uc009xvp.1_RNA|ZDHHC16_uc001knp.2_5'Flank|ZDHHC16_uc001knk.2_5'Flank|ZDHHC16_uc001knl.2_5'Flank|ZDHHC16_uc001knm.2_5'Flank|ZDHHC16_uc001knn.2_5'Flank|ZDHHC16_uc010qow.1_5'Flank|ZDHHC16_uc009xvq.2_5'Flank|ZDHHC16_uc001kno.2_5'Flank|ZDHHC16_uc001knj.2_5'Flank	NM_016046	NP_057130	Q9Y3B2	EXOS1_HUMAN	exosomal core protein CSL4	5					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	protein binding|RNA binding				0		Renal(717;0.000147)|Colorectal(252;0.00205)|Ovarian(717;0.00965)		all cancers(201;8.29e-42)|Epithelial(162;5.7e-33)|BRCA - Breast invasive adenocarcinoma(275;0.000315)|Kidney(138;0.000832)|KIRC - Kidney renal clear cell carcinoma(50;0.00269)|STAD - Stomach adenocarcinoma(243;0.202)		TGCAGTATCTCACAGGTGGCG	0.557000											OREG0020413	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	41					0	0	0	0
ZFYVE27	118813	broad.mit.edu	37	10	99510111	99510111	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:99510111C>G	uc001koo.2	+	7	888	c.688C>G	c.(688-690)CTG>GTG	p.L230V	ZFYVE27_uc001kon.2_Missense_Mutation_p.L230V|ZFYVE27_uc001koq.2_Missense_Mutation_p.L144V|ZFYVE27_uc010qpa.1_Missense_Mutation_p.L112V|ZFYVE27_uc001kop.2_Missense_Mutation_p.L230V|ZFYVE27_uc010qpb.1_Missense_Mutation_p.L132V|ZFYVE27_uc010qpc.1_RNA|ZFYVE27_uc010qpd.1_Missense_Mutation_p.L198V|ZFYVE27_uc001kok.1_RNA|ZFYVE27_uc001kol.1_Missense_Mutation_p.L230V|ZFYVE27_uc001kom.1_Missense_Mutation_p.L230V	NM_144588	NP_653189	Q5T4F4	ZFY27_HUMAN	zinc finger, FYVE domain containing 27 isoform	230	Extracellular (Potential).				cell death|nerve growth factor receptor signaling pathway|neuron projection development|protein localization in plasma membrane	axon|dendrite|endoplasmic reticulum membrane|growth cone membrane|integral to membrane|recycling endosome membrane	metal ion binding|protein binding			ovary(1)	1		Colorectal(252;0.0846)		Epithelial(162;7.08e-10)|all cancers(201;5.18e-08)		CAGGGCATCTCTGCAGCAGAG	0.542000													22	51					0	0	0	0
C10orf28	27291	broad.mit.edu	37	10	99968101	99968101	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:99968101G>C	uc001kow.3	+	4	525	c.230G>C	c.(229-231)AGA>ACA	p.R77T	C10orf28_uc001kox.3_Missense_Mutation_p.R77T|C10orf28_uc001koy.3_Missense_Mutation_p.R77T|C10orf28_uc009xvx.2_Missense_Mutation_p.R77T|C10orf28_uc009xvy.2_Intron|C10orf28_uc001koz.3_Intron	NM_014472	NP_055287	Q4KMY3	Q4KMY3_HUMAN	growth inhibition and differentiation related	77							nucleotide binding			large_intestine(1)|skin(1)	2		Colorectal(252;0.234)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)		AATCCTGATAGAAAGGAGCAT	0.348000													15	42					0	0	0	0
LOXL4	84171	broad.mit.edu	37	10	100017517	100017517	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:100017517C>T	uc001kpa.1	-	8	1301	c.1150G>A	c.(1150-1152)GAG>AAG	p.E384K		NM_032211	NP_115587	Q96JB6	LOXL4_HUMAN	lysyl oxidase-like 4 precursor	384	SRCR 3.					extracellular space|membrane	copper ion binding|protein binding|scavenger receptor activity			ovary(3)|breast(1)|skin(1)	5		Colorectal(252;0.234)		Epithelial(162;2.14e-11)|all cancers(201;2.49e-09)		AGGGTCCGCTCATATCCCCTG	0.592000													33	77					0	0	0	0
DNMBP	23268	broad.mit.edu	37	10	101668784	101668784	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:101668784G>C	uc001kqj.2	-	5	2472	c.2380C>G	c.(2380-2382)CAG>GAG	p.Q794E	DNMBP_uc001kqg.2_Missense_Mutation_p.Q82E|DNMBP_uc001kqh.2_Missense_Mutation_p.Q426E	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	794	DH.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		CTTTCTGTCTGAAGAAGTTCT	0.507000													16	20					0	0	0	0
PAX2	5076	broad.mit.edu	37	10	102568884	102568884	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:102568884C>G	uc001krk.3	+	8	1429	c.879C>G	c.(877-879)CTC>CTG	p.L293L	PAX2_uc001krl.3_Silent_p.L270L|PAX2_uc001krm.3_Silent_p.L293L|PAX2_uc001kro.3_Silent_p.L270L|PAX2_uc001krn.3_Silent_p.L270L|PAX2_uc010qps.1_Silent_p.L269L|PAX2_uc001krp.1_Silent_p.L266L	NM_003990	NP_003981	Q02962	PAX2_HUMAN	paired box protein 2 isoform e	293					anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity				0		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		AGTACTCCCTCCCAGCCCTGA	0.567000													30	75					0	0	0	0
GPAM	57678	broad.mit.edu	37	10	113928115	113928115	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:113928115G>C	uc009xxy.1	-	11	1260	c.1062C>G	c.(1060-1062)ATC>ATG	p.I354M	GPAM_uc001kzp.2_Missense_Mutation_p.I354M|GPAM_uc001kzq.1_Missense_Mutation_p.I354M	NM_020918	NP_065969	Q9HCL2	GPAT1_HUMAN	mitochondrial glycerol 3-phosphate	354					phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity			ovary(1)|skin(1)	2				Epithelial(162;0.0306)|all cancers(201;0.123)		GATCATAGGAGATTCCAACAG	0.403000													19	44					0	0	0	0
NRAP	4892	broad.mit.edu	37	10	115364392	115364392	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:115364392C>T	uc001laj.2	-	35	4367	c.4203G>A	c.(4201-4203)AAG>AAA	p.K1401K	NRAP_uc009xyb.2_Silent_p.K190K|NRAP_uc001lak.2_Silent_p.K1366K|NRAP_uc001lal.3_Silent_p.K1401K	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	1401	Nebulin 37.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		CATGGGCTTTCTTGGCCCAGG	0.577000													11	31					0	0	0	0
NRAP	4892	broad.mit.edu	37	10	115372035	115372035	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:115372035C>T	uc001laj.2	-	30	3620	c.3456G>A	c.(3454-3456)CTG>CTA	p.L1152L	NRAP_uc009xyb.2_Intron|NRAP_uc001lak.2_Silent_p.L1117L|NRAP_uc001lal.3_Silent_p.L1152L	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	1152	Nebulin 30.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		AGCTCAGCCTCAGGTCTTCTG	0.557000													13	54					0	0	0	0
AFAP1L2	84632	broad.mit.edu	37	10	116059062	116059062	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:116059062C>G	uc001lbn.2	-	16	2371	c.2070G>C	c.(2068-2070)CGG>CGC	p.R690R	AFAP1L2_uc001lbo.2_Silent_p.R690R|AFAP1L2_uc010qse.1_Silent_p.R743R|AFAP1L2_uc001lbp.2_Silent_p.R718R|AFAP1L2_uc001lbr.1_Silent_p.R689R|AFAP1L2_uc001lbm.2_Silent_p.R129R|AFAP1L2_uc010qsd.1_Silent_p.R256R|AFAP1L2_uc001lbq.1_Silent_p.R212R	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	690	Potential.				inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		GTTTCTCTTTCCGGAGCTGAG	0.562000													14	39					0	0	0	0
ABLIM1	3983	broad.mit.edu	37	10	116251568	116251568	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:116251568C>G	uc010qsg.1	-	7	1063	c.964G>C	c.(964-966)GAG>CAG	p.E322Q	ABLIM1_uc010qsh.1_Missense_Mutation_p.E262Q|ABLIM1_uc010qsi.1_Missense_Mutation_p.E262Q|ABLIM1_uc010qsk.1_Missense_Mutation_p.E246Q|ABLIM1_uc009xyp.2_Missense_Mutation_p.E256Q|ABLIM1_uc010qsf.1_Missense_Mutation_p.E6Q|ABLIM1_uc009xyn.2_5'UTR|ABLIM1_uc010qsj.1_5'UTR|ABLIM1_uc009xyo.2_Missense_Mutation_p.E170Q	NM_002313	NP_002304	O14639	ABLM1_HUMAN	actin-binding LIM protein 1 isoform a	322	LIM zinc-binding 4.				axon guidance|cytoskeleton organization|organ morphogenesis|visual perception	actin cytoskeleton|cytoplasm	actin binding|zinc ion binding			breast(1)	1		Colorectal(252;0.0373)|Breast(234;0.231)		Epithelial(162;0.0132)|all cancers(201;0.0383)		TACATTTCCTCTCCTTCTGTG	0.453000													30	67					0	0	0	0
FAM160B1	57700	broad.mit.edu	37	10	116620558	116620558	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:116620558C>T	uc001lcb.2	+	15	2333	c.1998C>T	c.(1996-1998)CTC>CTT	p.L666L	FAM160B1_uc001lcc.2_Silent_p.L666L	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	666										lung(1)	1						GACTTTCTCTCTTCCCTCATC	0.398000													47	99					0	0	0	0
BTBD16	118663	broad.mit.edu	37	10	124050611	124050611	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:124050611G>A	uc001lgc.1	+	7	743	c.492G>A	c.(490-492)CTG>CTA	p.L164L	BTBD16_uc001lgd.1_Silent_p.L163L	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	164	BTB.									skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				CCACGGCCCTGAAGAACCTCT	0.597000													43	130					0	0	0	0
CTBP2	1488	broad.mit.edu	37	10	126681792	126681792	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:126681792C>T	uc009yak.2	-	9	1305	c.1018G>A	c.(1018-1020)GAG>AAG	p.E340K	CTBP2_uc009yal.2_Missense_Mutation_p.E340K|CTBP2_uc001lif.3_Missense_Mutation_p.E340K|CTBP2_uc001lih.3_Missense_Mutation_p.E340K|CTBP2_uc001lid.3_Missense_Mutation_p.E408K|CTBP2_uc001lie.3_Missense_Mutation_p.E880K	NM_001329	NP_001320	P56545	CTBP2_HUMAN	C-terminal binding protein 2 isoform 1	340					negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent|viral genome replication|white fat cell differentiation	cell junction|synapse|transcriptional repressor complex	NAD binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein binding				0		all_lung(145;0.0132)|Lung NSC(174;0.0193)|all_neural(114;0.116)|Colorectal(57;0.173)		Colorectal(40;0.00572)|COAD - Colon adenocarcinoma(40;0.0127)|GBM - Glioblastoma multiforme(135;0.147)		CGGCGGATCTCGGTGGCAGCT	0.632000													6	17					0	0	0	0
UROS	7390	broad.mit.edu	37	10	127503692	127503692	+	Missense_Mutation	SNP	T	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:127503692T>A	uc001liw.3	-	3	288	c.155A>T	c.(154-156)CAT>CTT	p.H52L	UROS_uc001liv.3_5'UTR|UROS_uc010quh.1_RNA|UROS_uc001lix.3_Missense_Mutation_p.H52L|UROS_uc001liy.3_RNA|UROS_uc001liz.2_RNA	NM_000375	NP_000366	P10746	HEM4_HUMAN	uroporphyrinogen III synthase	52					heme biosynthetic process|uroporphyrinogen III biosynthetic process	cytosol|mitochondrion	uroporphyrinogen-III synthase activity				0		all_lung(145;0.00756)|Lung NSC(174;0.0116)|Colorectal(57;0.0855)|all_neural(114;0.0937)|Breast(234;0.203)				ATCTTCAGGATGAGAAAGCTG	0.428000													6	17					0	0	0	0
DOCK1	1793	broad.mit.edu	37	10	128840976	128840976	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:128840976C>G	uc001ljt.2	+	20	2099	c.2035C>G	c.(2035-2037)CTG>GTG	p.L679V	DOCK1_uc010qun.1_Missense_Mutation_p.L700V	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	679					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		CTTTGATGCTCTGGTAAGAGA	0.488000													26	45					0	0	0	0
LRDD	55367	broad.mit.edu	37	11	802015	802015	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:802015C>T	uc001lro.1	-	7	1394	c.1252G>A	c.(1252-1254)GAC>AAC	p.D418N	LRDD_uc009yck.1_RNA|LRDD_uc001lrk.1_Missense_Mutation_p.D418N|LRDD_uc001lrl.1_Missense_Mutation_p.D272N|LRDD_uc001lrm.1_Missense_Mutation_p.D105N|LRDD_uc001lrn.1_Missense_Mutation_p.D272N|LRDD_uc001lrp.1_5'UTR	NM_145886	NP_665893	Q9HB75	PIDD_HUMAN	leucine rich repeat and death domain containing	418	ZU5 1.				apoptosis|signal transduction	cytoplasm|nucleus	death receptor binding				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CAGCTGTTGTCATTCCGGGTC	0.662000													9	14					0	0	0	0
RPLP2	6181	broad.mit.edu	37	11	812802	812802	+	Nonsense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:812802C>G	uc001lrq.1	+	5	419	c.314C>G	c.(313-315)TCA>TGA	p.S105*	RPLP2_uc001lrr.1_Nonsense_Mutation_p.S105*	NM_001004	NP_000995	P05387	RLA2_HUMAN	ribosomal protein P2	105					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TCTGAAGAGTCAGATGATGAC	0.478000													10	27					0	0	0	0
OR52I1	390037	broad.mit.edu	37	11	4616129	4616129	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:4616129C>T	uc010qyi.1	+	1	861	c.861C>T	c.(859-861)ATC>ATT	p.I287I		NM_001005169	NP_001005169	Q8NGK6	O52I1_HUMAN	olfactory receptor, family 52, subfamily I,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;7.98e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGTACGTGATCATCCCAGCCA	0.498000													37	103					0	0	0	0
OR10A4	283297	broad.mit.edu	37	11	6898070	6898070	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:6898070C>T	uc010rat.1	+	1	192	c.192C>T	c.(190-192)CTC>CTT	p.L64L		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ACTTCTTCCTCAGAAACTTGT	0.438000													38	91					0	0	0	0
OR5P3	120066	broad.mit.edu	37	11	7846617	7846617	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:7846617C>T	uc010rbg.1	-	1	903	c.903G>A	c.(901-903)CTG>CTA	p.L301L		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GCTCTCTCTTCAGAGCCCCCT	0.373000													15	17					0	0	0	0
OR5P3	120066	broad.mit.edu	37	11	7846842	7846842	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:7846842C>T	uc010rbg.1	-	1	678	c.678G>A	c.(676-678)CTG>CTA	p.L226L		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGTGCATCTTCAGGATGGTGA	0.468000													21	38					0	0	0	0
DBX1	120237	broad.mit.edu	37	11	20178090	20178090	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:20178090C>T	uc001mpw.1	-	4	819	c.819G>A	c.(817-819)ATG>ATA	p.M273I		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	234	Homeobox.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCCGCCATTTCATGCGTCGGT	0.637000													19	36					0	0	0	0
ANO5	203859	broad.mit.edu	37	11	22261169	22261169	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:22261169C>T	uc001mqi.2	+	9	1134	c.817C>T	c.(817-819)CTT>TTT	p.L273F	ANO5_uc001mqj.2_Missense_Mutation_p.L272F	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	273	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						AAGATACACACTTCACCAGAA	0.403000													25	64					0	0	0	0
RTN4RL2	349667	broad.mit.edu	37	11	57235412	57235412	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:57235412C>G	uc010rjt.1	+	2	362	c.362C>G	c.(361-363)TCG>TGG	p.S121W		NM_178570	NP_848665	Q86UN3	R4RL2_HUMAN	reticulon 4 receptor-like 2 precursor	121	LRR 3.				axon regeneration	anchored to plasma membrane	receptor activity				0						CACCTGCGCTCGCTGGAGCCC	0.647000													28	66					0	0	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995911	57995911	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:57995911G>A	uc010rkd.1	-	1	437	c.437C>T	c.(436-438)ACG>ATG	p.T146M		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				CAGCATCTGCGTGCACAGCTC	0.617000													6	17					0	0	0	0
OR5B21	219968	broad.mit.edu	37	11	58275483	58275483	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:58275483G>C	uc010rki.1	-	1	96	c.96C>G	c.(94-96)ATC>ATG	p.I32M		NM_001005218	NP_001005218	A6NL26	OR5BL_HUMAN	olfactory receptor, family 5, subfamily B,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TGATGAGGTAGATGAATAAAA	0.468000													17	77					0	0	0	0
PRPF19	27339	broad.mit.edu	37	11	60658681	60658681	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:60658681G>A	uc001nqf.2	-	16	1679	c.1472C>T	c.(1471-1473)GCT>GTT	p.A491V		NM_014502	NP_055317	Q9UMS4	PRP19_HUMAN	PRP19/PSO4 pre-mRNA processing factor 19	491	WD 7.				DNA repair|protein polyubiquitination|spliceosome assembly	catalytic step 2 spliceosome|nuclear speck|spindle|ubiquitin ligase complex	DNA binding|identical protein binding|ubiquitin-ubiquitin ligase activity			ovary(1)	1						GCCTGTTGAAGCGATGAACTT	0.547000													10	29					0	0	0	0
ESRRA	2101	broad.mit.edu	37	11	64082613	64082613	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:64082613G>C	uc001nzq.1	+	6	1060	c.883G>C	c.(883-885)GAG>CAG	p.E295Q	ESRRA_uc001nzr.1_Missense_Mutation_p.E294Q|ESRRA_uc001nzs.1_Missense_Mutation_p.E295Q|ESRRA_uc009ypn.1_RNA|PRDX5_uc001nzu.2_5'Flank|PRDX5_uc001nzv.2_5'Flank|PRDX5_uc001nzw.2_5'Flank	NM_004451	NP_004442	P11474	ERR1_HUMAN	estrogen-related receptor alpha	295	Ligand binding domain.				positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein domain specific binding|sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0						CCTGGATGAAGAGGGGGCACG	0.662000													10	31					0	0	0	0
CCDC88B	283234	broad.mit.edu	37	11	64108793	64108793	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:64108793C>T	uc001nzy.2	+	5	484	c.440C>T	c.(439-441)TCA>TTA	p.S147L	CCDC88B_uc009ypo.1_Missense_Mutation_p.S144L|CCDC88B_uc001nzz.1_5'Flank	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	147					microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						TTGGGAGCGTCAGTACAGGTG	0.602000													23	52					0	0	0	0
RASGRP2	10235	broad.mit.edu	37	11	64510276	64510276	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:64510276G>A	uc009ypu.2	-	2	290	c.63C>T	c.(61-63)ATC>ATT	p.I21I	RASGRP2_uc001oat.2_5'Flank|RASGRP2_uc001oau.2_5'Flank|RASGRP2_uc009ypv.2_Silent_p.I21I|RASGRP2_uc009ypw.2_Silent_p.I21I|RASGRP2_uc001oaw.1_Missense_Mutation_p.S324L	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	21	N-terminal Ras-GEF.				platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						CGAAGGCTTCGATGCACCCGC	0.726000													9	16					0	0	0	0
LTBP3	4054	broad.mit.edu	37	11	65319844	65319844	+	Missense_Mutation	SNP	C	T	T	rs147206443		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:65319844C>T	uc001oej.2	-	7	1489	c.1220G>A	c.(1219-1221)CGC>CAC	p.R407H	LTBP3_uc010roi.1_Missense_Mutation_p.R290H|LTBP3_uc001oei.2_Missense_Mutation_p.R407H|LTBP3_uc010roj.1_Missense_Mutation_p.R108H|LTBP3_uc010rok.1_Missense_Mutation_p.R318H	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	407	TB 2.					extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						GCTCACCAGGCGGAAACACAG	0.677000											OREG0021081	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	63					0	0	0	0
KAT5	10524	broad.mit.edu	37	11	65486586	65486586	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:65486586C>G	uc001ofi.2	+	14	1726	c.1476C>G	c.(1474-1476)CTC>CTG	p.L492L	KAT5_uc001ofj.2_Silent_p.L440L|KAT5_uc001ofk.2_Silent_p.L525L|KAT5_uc010roo.1_Silent_p.L473L|KAT5_uc001ofl.2_Silent_p.L281L|RNASEH2C_uc001ofm.2_RNA|RNASEH2C_uc001ofn.2_3'UTR	NM_006388	NP_006379	Q92993	KAT5_HUMAN	K(lysine) acetyltransferase 5 isoform 2	492					androgen receptor signaling pathway|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|double-strand break repair|interspecies interaction between organisms|negative regulation of interleukin-2 production|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nucleolus|perinuclear region of cytoplasm|Piccolo NuA4 histone acetyltransferase complex	androgen receptor binding|histone acetyltransferase activity|metal ion binding|repressing transcription factor binding|transcription coactivator activity				0						TCAAGCGGCTCCTGCGGATCG	0.607000													15	28					0	0	0	0
CORO1B	57175	broad.mit.edu	37	11	67209950	67209950	+	Silent	SNP	C	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:67209950C>A	uc001olj.1	-	1	186	c.150G>T	c.(148-150)GTG>GTT	p.V50V	CORO1B_uc009yrs.1_RNA|CORO1B_uc001olk.1_Silent_p.V50V|CORO1B_uc009yrt.1_RNA|CORO1B_uc009yru.1_RNA|CORO1B_uc001oll.1_Silent_p.V50V|CORO1B_uc010rps.1_Silent_p.V50V|CORO1B_uc009yrv.1_Silent_p.V50V	NM_020441	NP_065174	Q9BR76	COR1B_HUMAN	coronin, actin binding protein, 1B	50					actin cytoskeleton organization	actin cytoskeleton|cytoplasm	actin filament binding			large_intestine(1)|ovary(1)	2			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			CCTCCACAATCACCGCCAGGA	0.627000													13	35					3.41278e-10	3.50869e-10	1	0
PITPNM1	9600	broad.mit.edu	37	11	67266171	67266171	+	Missense_Mutation	SNP	G	T	T	rs115377785	byFrequency	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:67266171G>T	uc001olx.2	-	9	1569	c.1380C>A	c.(1378-1380)TTC>TTA	p.F460L	PITPNM1_uc001olw.2_5'Flank|PITPNM1_uc001oly.2_Missense_Mutation_p.F460L|PITPNM1_uc001olz.2_Missense_Mutation_p.F460L	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	460					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						TGACGGCCTCGAAGGCGGAGC	0.657000													18	57					6.49762e-13	6.71956e-13	1	0
PITPNM1	9600	broad.mit.edu	37	11	67266178	67266178	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:67266178G>A	uc001olx.2	-	9	1562	c.1373C>T	c.(1372-1374)TCC>TTC	p.S458F	PITPNM1_uc001olw.2_5'Flank|PITPNM1_uc001oly.2_Missense_Mutation_p.S458F|PITPNM1_uc001olz.2_Missense_Mutation_p.S458F	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	458					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						CTCGAAGGCGGAGCTCAGCGT	0.667000													17	52					0	0	0	0
NUDT8	254552	broad.mit.edu	37	11	67395432	67395432	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:67395432C>T	uc001omo.1	-	4	715	c.696G>A	c.(694-696)CTG>CTA	p.L232L	NUDT8_uc001omn.2_3'UTR	NM_181843	NP_862826	Q8WV74	NUDT8_HUMAN	nudix-type motif 8	232						mitochondrion	hydrolase activity|metal ion binding				0						GACCTTTATTCAGTCCTGGAG	0.642000													9	15					0	0	0	0
TCIRG1	10312	broad.mit.edu	37	11	67808853	67808853	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:67808853G>C	uc001one.2	+	2	223	c.115G>C	c.(115-117)GAC>CAC	p.D39H	TCIRG1_uc001ond.1_Missense_Mutation_p.D39H|TCIRG1_uc001onf.1_Missense_Mutation_p.D39H|TCIRG1_uc001ong.2_5'Flank|TCIRG1_uc001onh.2_5'Flank|TCIRG1_uc001oni.2_5'Flank	NM_006019	NP_006010	Q13488	VPP3_HUMAN	T-cell, immune regulator 1 isoform a	39	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular defense response|cellular iron ion homeostasis|insulin receptor signaling pathway|positive regulation of cell proliferation|transferrin transport	apical plasma membrane|endosome membrane|integral to plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity			ovary(1)	1						GGAGTTCAGAGACGTGAGTTG	0.692000													13	60					0	0	0	0
FAM86C	55199	broad.mit.edu	37	11	71510692	71510692	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:71510692G>A	uc001oqv.3	+	5	523	c.497G>A	c.(496-498)TGA>TAA	p.*166*	FAM86C_uc009ysr.2_Silent_p.*159*|FAM86C_uc001oqw.3_Silent_p.*132*|FAM86C_uc009yss.2_RNA|FAM86C_uc010rqq.1_RNA|uc001oqx.1_Intron	NM_018172	NP_060642	Q9NVL1	FA86C_HUMAN	hypothetical protein LOC55199 isoform 1	166											0						TGGCAAAGCTGAACCTCACAC	0.468000													23	58					0	0	0	0
C2CD3	26005	broad.mit.edu	37	11	73795939	73795939	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:73795939C>T	uc001ouu.2	-	22	4214	c.3987G>A	c.(3985-3987)CTG>CTA	p.L1329L	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1329						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					ATCTCTTGATCAGCAGCTCTT	0.388000													11	17					0	0	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103060496	103060496	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:103060496C>T	uc001pho.2	+	45	7532	c.7388C>T	c.(7387-7389)TCA>TTA	p.S2463L	DYNC2H1_uc001phn.1_Missense_Mutation_p.S2463L|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2463	AAA 3 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TGGGGTTCTTCATCAAAAATT	0.318000													15	22					0	0	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120312464	120312464	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:120312464C>T	uc001pxl.1	+	14	1148	c.1141C>T	c.(1141-1143)CGC>TGC	p.R381C	ARHGEF12_uc009zat.2_Missense_Mutation_p.R362C|ARHGEF12_uc010rzn.1_Missense_Mutation_p.R278C|ARHGEF12_uc009zau.1_Missense_Mutation_p.R278C	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	381	RGSL.				apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		ACTAAAATCTCGCCCGGCTCA	0.373000			T	MLL	AML								29	46					0	0	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128933836	128933836	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr11:128933836C>G	uc009zcp.2	-	8	804	c.804G>C	c.(802-804)AAG>AAC	p.K268N	ARHGAP32_uc009zcq.1_Missense_Mutation_p.K228N|ARHGAP32_uc001qfb.2_Missense_Mutation_p.K53N	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	268	SH3.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						CAGTGTACCTCTTGATAACAT	0.428000													43	51					0	0	0	0
CACNA1C	775	broad.mit.edu	37	12	2797906	2797906	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:2797906G>A	uc009zdu.1	+	49	6640	c.6327G>A	c.(6325-6327)GGG>GGA	p.G2109G	CACNA1C_uc009zdv.1_Silent_p.G2023G|CACNA1C_uc001qkb.2_Silent_p.G2026G|CACNA1C_uc001qkc.2_Silent_p.G2045G|CACNA1C_uc001qke.2_Silent_p.G2015G|CACNA1C_uc001qkf.2_Silent_p.G2034G|CACNA1C_uc001qjz.2_Silent_p.G2026G|CACNA1C_uc001qkd.2_Silent_p.G2045G|CACNA1C_uc001qkg.2_Silent_p.G2032G|CACNA1C_uc009zdw.1_Silent_p.G2067G|CACNA1C_uc001qkh.2_Silent_p.G2034G|CACNA1C_uc001qkl.2_Silent_p.G2074G|CACNA1C_uc001qkn.2_Silent_p.G2026G|CACNA1C_uc001qko.2_Silent_p.G2046G|CACNA1C_uc001qkp.2_Silent_p.G2026G|CACNA1C_uc001qkr.2_Silent_p.G2043G|CACNA1C_uc001qku.2_Silent_p.G2061G|CACNA1C_uc001qkq.2_Silent_p.G2054G|CACNA1C_uc001qks.2_Silent_p.G2026G|CACNA1C_uc001qkt.2_Silent_p.G2045G|CACNA1C_uc001qki.1_Silent_p.G1833G|CACNA1C_uc001qkj.1_Silent_p.G1797G|CACNA1C_uc001qkk.1_Silent_p.G1762G|CACNA1C_uc001qkm.1_Silent_p.G1822G|CACNA1C_uc010sea.1_Silent_p.G717G|uc001qkx.1_Intron|CACNA1C_uc001qky.1_Silent_p.G344G	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	2109	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GGGCCCCAGGGAGGCAGTTCC	0.721000													4	6					0	0	0	0
SCNN1A	6337	broad.mit.edu	37	12	6457040	6457040	+	Nonstop_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:6457040C>G	uc001qnx.2	-	13	2298	c.2009G>C	c.(2008-2010)TGA>TCA	p.*670S	SCNN1A_uc001qnv.2_Nonstop_Mutation_p.*370S|SCNN1A_uc001qnw.2_Nonstop_Mutation_p.*729S|SCNN1A_uc010sfb.1_Nonstop_Mutation_p.*693S	NM_001038	NP_001029	P37088	SCNNA_HUMAN	sodium channel, nonvoltage-gated 1 alpha isoform	670					excretion|response to stimulus|sensory perception of taste	apical plasma membrane	WW domain binding				0					Amiloride(DB00594)|Triamterene(DB00384)	CCTTCCCTCTCAGGGCCCCCC	0.488000													3	10					0	0	0	0
LRRC23	10233	broad.mit.edu	37	12	7022144	7022144	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:7022144G>A	uc001qrt.3	+	7	1401	c.1009G>A	c.(1009-1011)GAA>AAA	p.E337K	LRRC23_uc001qrp.2_Missense_Mutation_p.E337K|LRRC23_uc001qrq.2_Intron|LRRC23_uc001qrr.2_Missense_Mutation_p.E286K|LRRC23_uc001qrs.2_Intron|LRRC23_uc009zfh.2_Intron|ENO2_uc001qru.1_5'Flank|ENO2_uc009zfi.1_5'Flank|ENO2_uc010sfq.1_5'Flank|ENO2_uc001qrv.1_5'Flank	NM_001135217	NP_001128689	Q53EV4	LRC23_HUMAN	leucine rich repeat containing 23 isoform a	337										ovary(1)	1						GCGTGACCTGGAACCCGAACA	0.557000													51	124					0	0	0	0
C1S	716	broad.mit.edu	37	12	7177493	7177493	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:7177493G>A	uc001qsj.2	+	15	2324	c.1605G>A	c.(1603-1605)CTG>CTA	p.L535L	C1S_uc001qsk.2_Silent_p.L535L|C1S_uc001qsl.2_Silent_p.L535L|C1S_uc009zfr.2_Silent_p.L368L|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	535	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	TGGTGCGGCTGAAAGACCCAG	0.527000													10	18					0	0	0	0
CD163L1	283316	broad.mit.edu	37	12	7525937	7525937	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:7525937C>G	uc001qsy.2	-	14	3735	c.3709G>C	c.(3709-3711)GAG>CAG	p.E1237Q	CD163L1_uc010sge.1_Missense_Mutation_p.E1247Q	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1237	SRCR 11.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						ATCCAGGTCTCTTCTGCTGGG	0.458000													23	37					0	0	0	0
DDX12	440081	broad.mit.edu	37	12	9581798	9581798	+	Silent	SNP	C	T	T	rs11050925		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:9581798C>T	uc010sgs.1	-	12	1494	c.1299G>A	c.(1297-1299)TTG>TTA	p.L433L		NM_004400	NP_004391			DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12												0						TCTTGGCCTTCAAACGCTTCC	0.602000													3	10					0	0	0	0
GUCY2C	2984	broad.mit.edu	37	12	14773978	14773978	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:14773978G>C	uc001rcd.2	-	23	2911	c.2774C>G	c.(2773-2775)TCT>TGT	p.S925C		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	925	Cytoplasmic (Potential).|Guanylate cyclase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						CTCCATACCAGAGTGAACTCC	0.468000													8	11					0	0	0	0
ABCC9	10060	broad.mit.edu	37	12	21998612	21998612	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:21998612G>A	uc001rfi.1	-	24	3041	c.3021C>T	c.(3019-3021)GTC>GTT	p.V1007V	ABCC9_uc001rfh.2_Silent_p.V1007V|ABCC9_uc001rfj.1_Silent_p.V971V	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1007	Helical; Name=12; (Potential).|ABC transmembrane type-1 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TAGCTACAATGACCGAATGCT	0.428000													14	26					0	0	0	0
PPFIBP1	8496	broad.mit.edu	37	12	27824475	27824475	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:27824475G>A	uc001ric.1	+	14	1686	c.1309G>A	c.(1309-1311)GAA>AAA	p.E437K	PPFIBP1_uc010sjr.1_Missense_Mutation_p.E268K|PPFIBP1_uc001rib.1_Missense_Mutation_p.E420K|PPFIBP1_uc001ria.2_Missense_Mutation_p.E406K|PPFIBP1_uc001rid.1_Missense_Mutation_p.E284K	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	437					cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					TTCATTTGAAGAAAAGTATGT	0.333000													7	24					0	0	0	0
DDX11	1663	broad.mit.edu	37	12	31253968	31253968	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:31253968G>C	uc001rjt.1	+	20	2207	c.1956G>C	c.(1954-1956)GTG>GTC	p.V652V	DDX11_uc001rjr.1_Silent_p.V652V|DDX11_uc001rjs.1_Silent_p.V652V|DDX11_uc001rju.1_Intron|DDX11_uc001rjv.1_Silent_p.V652V|DDX11_uc001rjw.1_Silent_p.V626V|DDX11_uc009zjn.1_RNA|DDX11_uc009zjo.1_5'Flank	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	652					G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					CAGGTCACGTGATCCCTCCAG	0.577000										Multiple Myeloma(12;0.14)			35	124					0	0	0	0
DENND5B	160518	broad.mit.edu	37	12	31545220	31545220	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:31545220G>C	uc001rki.1	-	19	3633	c.3447C>G	c.(3445-3447)GTC>GTG	p.V1149V	DENND5B_uc001rkh.1_Silent_p.V1184V|DENND5B_uc009zjq.1_Intron	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	1149	RUN 2.			V -> A (in Ref. 1; BAC04583).		integral to membrane				ovary(1)|central_nervous_system(1)	2						CCCAGATGAAGACATTCTTGT	0.443000													6	16					0	0	0	0
IRAK4	51135	broad.mit.edu	37	12	44180229	44180229	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:44180229G>A	uc001rnu.3	+	12	1346	c.1216G>A	c.(1216-1218)GAA>AAA	p.E406K	IRAK4_uc001rnt.3_Missense_Mutation_p.E406K|IRAK4_uc001rnx.3_Missense_Mutation_p.E282K|IRAK4_uc001rny.3_Missense_Mutation_p.E282K|IRAK4_uc010sky.1_Missense_Mutation_p.E282K|IRAK4_uc001rnv.3_Missense_Mutation_p.E282K|IRAK4_uc001rnw.3_Missense_Mutation_p.E282K	NM_001114182	NP_001107654	Q9NWZ3	IRAK4_HUMAN	interleukin-1 receptor-associated kinase 4	406	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0	all_cancers(12;0.00149)	Lung NSC(34;0.0804)|all_lung(34;0.181)		GBM - Glioblastoma multiforme(48;0.04)		AATTGAAGATGAAGAAAAGAC	0.269000													9	20					0	0	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46328004	46328004	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:46328004G>A	uc001rox.2	-	8	874	c.587C>T	c.(586-588)TCT>TTT	p.S196F	SFRS2IP_uc001roy.1_Missense_Mutation_p.S270F	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	196					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		GTGGCTAACAGAAGAAAACAT	0.299000													6	10					0	0	0	0
WNT10B	7480	broad.mit.edu	37	12	49364240	49364240	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:49364240G>A	uc001rss.2	-	2	419	c.73C>T	c.(73-75)CGG>TGG	p.R25W	WNT10B_uc001rst.2_Missense_Mutation_p.R25W	NM_003394	NP_003385	O00744	WN10B_HUMAN	wingless-type MMTV integration site family,	25					axis specification|bone trabecula formation|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|chondrocyte differentiation|female gonad development|hemopoietic stem cell proliferation|midbrain-hindbrain boundary development|myoblast cell differentiation involved in skeletal muscle regeneration|negative regulation of epithelial cell proliferation|negative regulation of fat cell differentiation|neuron differentiation|positive regulation of anagen|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cell proliferation|positive regulation of epithelial cell differentiation|positive regulation of osteoblast differentiation|protein stabilization|regulation of skeletal muscle tissue development|skeletal muscle fiber development|smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			skin(4)|lung(3)	7						ACTGCTCACCGACTGCACAAC	0.687000													8	12					0	0	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50195635	50195635	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:50195635G>A	uc009zlk.2	-	6	549	c.347C>T	c.(346-348)CCT>CTT	p.P116L		NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	112	Pro-rich.									central_nervous_system(1)	1						GCCTACCTGAGGGAGCGAGCC	0.582000													12	40					0	0	0	0
BCDIN3D	144233	broad.mit.edu	37	12	50232622	50232622	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:50232622C>T	uc001rvh.2	-	2	453	c.411G>A	c.(409-411)ATG>ATA	p.M137I	LOC100286844_uc010smm.1_Intron|LOC100286844_uc001rvg.2_RNA|LOC100286844_uc010smn.1_RNA	NM_181708	NP_859059	Q7Z5W3	BN3D2_HUMAN	BCDIN3 domain containing	137	Bin3-type SAM.						methyltransferase activity			ovary(1)	1						TCCTTTGATTCATGAAGTCCA	0.458000											OREG0021805	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	33					0	0	0	0
DIP2B	57609	broad.mit.edu	37	12	51077027	51077027	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:51077027G>A	uc001rwv.2	+	10	1469	c.1313G>A	c.(1312-1314)AGA>AAA	p.R438K	DIP2B_uc009zlt.2_5'Flank	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	438						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						CCTCTTACCAGAAAGGTAACA	0.433000													21	38					0	0	0	0
LETMD1	25875	broad.mit.edu	37	12	51445895	51445895	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:51445895G>A	uc001rxm.2	+	3	351	c.295G>A	c.(295-297)GAT>AAT	p.D99N	LETMD1_uc010smz.1_Intron|LETMD1_uc010sna.1_Intron|LETMD1_uc001rxl.2_Missense_Mutation_p.D43N|LETMD1_uc009zlv.2_Intron|LETMD1_uc001rxs.2_Intron|LETMD1_uc009zlw.2_Missense_Mutation_p.D99N|LETMD1_uc001rxn.2_Intron|LETMD1_uc001rxo.2_Intron|LETMD1_uc001rxp.2_Intron|LETMD1_uc001rxq.2_Missense_Mutation_p.D99N|LETMD1_uc001rxr.2_Intron|LETMD1_uc001rxt.2_Intron	NM_015416	NP_056231	Q6P1Q0	LTMD1_HUMAN	LETM1 domain containing 1 isoform 1	99	Cytoplasmic (Potential).|LETM1.|Required and sufficient for mitochondrial import.					integral to membrane|mitochondrial outer membrane	protein binding			central_nervous_system(2)	2						GTTATGGGCTGATGCCAAAAA	0.398000													10	31					0	0	0	0
ACVRL1	94	broad.mit.edu	37	12	52314580	52314580	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:52314580G>A	uc001rzj.2	+	10	1698	c.1415G>A	c.(1414-1416)TGG>TAG	p.W472*	ACVRL1_uc001rzk.2_Nonsense_Mutation_p.W472*|ACVRL1_uc010snm.1_Nonsense_Mutation_p.W298*	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	472	Cytoplasmic (Potential).|Protein kinase.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	CGGGAGTGCTGGTACCCAAAC	0.438000									Hereditary_Hemorrhagic_Telangiectasia				11	43					0	0	0	0
KRT82	3888	broad.mit.edu	37	12	52799720	52799720	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:52799720C>T	uc001sai.1	-	1	457	c.342G>A	c.(340-342)CAG>CAA	p.Q114Q		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	114	Head.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		TCTTTACCCTCTGCACAGTCG	0.577000													64	139					0	0	0	0
ESPL1	9700	broad.mit.edu	37	12	53675335	53675335	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:53675335G>T	uc001sck.2	+	13	2635	c.2544G>T	c.(2542-2544)CAG>CAT	p.Q848H	ESPL1_uc001scj.2_Missense_Mutation_p.Q523H|ESPL1_uc010soe.1_Missense_Mutation_p.Q59H	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	848					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						ATCTCGATCAGACTACTGACA	0.483000													22	66					3.62473e-10	3.72224e-10	1	0
HOXC10	3226	broad.mit.edu	37	12	54379124	54379124	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:54379124G>A	uc001sen.2	+	1	179	c.81G>A	c.(79-81)CGG>CGA	p.R27R		NM_017409	NP_059105	Q9NYD6	HXC10_HUMAN	homeobox C10	27					positive regulation of cell proliferation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1						GCTATAGCCGGAGCGCAGGCA	0.612000													30	55					0	0	0	0
HOXC10	3226	broad.mit.edu	37	12	54383229	54383229	+	Nonstop_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:54383229G>C	uc001sen.2	+	2	1126	c.1028G>C	c.(1027-1029)TGA>TCA	p.*343S	uc001seo.2_5'Flank|MIR196A2_hsa-mir-196a-2|MI0000279_5'Flank	NM_017409	NP_059105	Q9NYD6	HXC10_HUMAN	homeobox C10	343					positive regulation of cell proliferation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1						AATTTCACCTGAGAGCGCGGc	0.303000											OREG0021882	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	12					0	0	0	0
GDF11	10220	broad.mit.edu	37	12	56142406	56142406	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:56142406G>A	uc001shq.2	+	2	519	c.482G>A	c.(481-483)TGC>TAC	p.C161Y	GDF11_uc010spv.1_Missense_Mutation_p.C161Y	NM_005811	NP_005802	O95390	GDF11_HUMAN	growth differentiation factor 11 precursor	161					growth|mesoderm development|skeletal system development	extracellular space	cytokine activity|growth factor activity			kidney(1)	1						AGCCCTCTCTGCTGCCATTTT	0.562000													53	164					0	0	0	0
DNAJC14	85406	broad.mit.edu	37	12	56221092	56221092	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:56221092C>T	uc001shx.1	-	2	1555	c.1351G>A	c.(1351-1353)GAG>AAG	p.E451K	DNAJC14_uc001shu.1_Missense_Mutation_p.E451K|DNAJC14_uc009zob.1_Missense_Mutation_p.E451K|DNAJC14_uc001shy.1_Missense_Mutation_p.E451K	NM_032364	NP_115740	Q6Y2X3	DJC14_HUMAN	dopamine receptor interacting protein	451	J.				protein folding|protein transport	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|unfolded protein binding			ovary(3)|large_intestine(1)	4						GCTGTGGCCTCAACCCCCAGT	0.512000													53	114					0	0	0	0
BAZ2A	11176	broad.mit.edu	37	12	56998928	56998928	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:56998928C>T	uc001slq.1	-	14	2877	c.2683G>A	c.(2683-2685)GAG>AAG	p.E895K	BAZ2A_uc001slp.1_Missense_Mutation_p.E893K|BAZ2A_uc001slo.1_5'Flank|BAZ2A_uc009zov.1_5'Flank|BAZ2A_uc009zow.1_Missense_Mutation_p.E863K	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	895	DDT.				chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						TCTTGCACCTCACCCAAGCTG	0.572000													15	42					0	0	0	0
CTDSP2	10106	broad.mit.edu	37	12	58220809	58220809	+	Silent	SNP	G	A	A	rs78691025		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:58220809G>A	uc001sqm.2	-	4	853	c.324C>T	c.(322-324)CTC>CTT	p.L108L	CTDSP2_uc010ssg.1_5'Flank|CTDSP2_uc009zqf.2_5'UTR|CTDSP2_uc009zqg.2_Intron|uc001sqn.2_5'Flank|MIR26A2_hsa-mir-26a-2|MI0000750_5'Flank	NM_005730	NP_005721	O14595	CTDS2_HUMAN	nuclear LIM interactor-interacting factor 2	108	FCP1 homology.				protein dephosphorylation	nucleus|soluble fraction	CTD phosphatase activity|metal ion binding			central_nervous_system(1)	1	all_neural(12;0.00559)|Glioma(12;0.0143)|Melanoma(17;0.122)					GGGTTTCATCGAGGTCAATGA	0.488000													15	48					0	0	0	0
USP15	9958	broad.mit.edu	37	12	62783731	62783731	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:62783731G>C	uc001src.1	+	14	1816	c.1807G>C	c.(1807-1809)GAA>CAA	p.E603Q	USP15_uc001srb.1_Missense_Mutation_p.E574Q	NM_006313	NP_006304	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	603					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)	3			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		AAACAATACTGAAGACAAACT	0.353000													5	19					0	0	0	0
E2F7	144455	broad.mit.edu	37	12	77444488	77444488	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:77444488C>G	uc001sym.3	-	4	642	c.406G>C	c.(406-408)GAA>CAA	p.E136Q	E2F7_uc001syn.2_Missense_Mutation_p.E136Q	NM_203394	NP_976328	Q96AV8	E2F7_HUMAN	E2F transcription factor 7	136					cell cycle	transcription factor complex	DNA binding|identical protein binding			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3						CTTTGCTTTTCAAATTCGTCC	0.453000													15	25					0	0	0	0
MYF6	4618	broad.mit.edu	37	12	81101775	81101775	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:81101775G>A	uc001szf.1	+	1	330	c.277G>A	c.(277-279)GAC>AAC	p.D93N		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	93	Basic motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						TGCCCCCACTGACCGGCGAAA	0.622000													10	27					0	0	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85517849	85517849	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:85517849G>C	uc001tac.2	+	17	3670	c.3559G>C	c.(3559-3561)GAT>CAT	p.D1187H	LRRIQ1_uc001tab.1_Missense_Mutation_p.D1187H	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1187										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TTTGTTCAGAGATGTATTTAC	0.323000													11	18					0	0	0	0
ATP2B1	490	broad.mit.edu	37	12	89997547	89997547	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:89997547C>G	uc001tbh.2	-	16	2971	c.2790G>C	c.(2788-2790)AAG>AAC	p.K930N	ATP2B1_uc001tbg.2_Missense_Mutation_p.K930N|ATP2B1_uc001tbf.2_Missense_Mutation_p.K600N	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	930	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						CCAAAATATTCTTCATCATTG	0.403000													24	54					0	0	0	0
VEZT	55591	broad.mit.edu	37	12	95676361	95676361	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:95676361G>A	uc001tdz.2	+	8	1374	c.1269G>A	c.(1267-1269)CTG>CTA	p.L423L	VEZT_uc009ztb.1_RNA|VEZT_uc009ztc.1_Intron|VEZT_uc001tdy.2_RNA	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	423						acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						CAAGAGAACTGAATAATGTTC	0.408000													16	41					0	0	0	0
ELK3	2004	broad.mit.edu	37	12	96640826	96640826	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:96640826C>G	uc001teo.1	+	3	595	c.316C>G	c.(316-318)CTG>GTG	p.L106V		NM_005230	NP_005221	P41970	ELK3_HUMAN	ELK3 protein	106					negative regulation of transcription, DNA-dependent|signal transduction	mitochondrion	protein binding|purine-rich negative regulatory element binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	all_cancers(2;0.00173)					GGAGAGCCTTCTGCTGCAGGA	0.597000													6	13					0	0	0	0
APAF1	317	broad.mit.edu	37	12	99053108	99053108	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:99053108C>T	uc001tfz.2	+	5	1274	c.697C>T	c.(697-699)CGC>TGC	p.R233C	APAF1_uc001tfy.2_Missense_Mutation_p.R222C|APAF1_uc001tga.2_Missense_Mutation_p.R222C|APAF1_uc001tgb.2_Missense_Mutation_p.R233C|APAF1_uc001tgc.2_Missense_Mutation_p.R233C	NM_181861	NP_863651	O14727	APAF_HUMAN	apoptotic peptidase activating factor 1 isoform	233	NB-ARC.				activation of caspase activity by cytochrome c|defense response|induction of apoptosis by intracellular signals|nervous system development	cytosol|Golgi apparatus|nucleus	ATP binding|caspase activator activity|protein binding			ovary(2)|lung(1)	3					Adenosine triphosphate(DB00171)	TCTGATGCTTCGCAAACACCC	0.453000													9	23					0	0	0	0
NUP37	79023	broad.mit.edu	37	12	102505992	102505992	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:102505992C>T	uc001tjc.2	-	2	240	c.175G>A	c.(175-177)GAA>AAA	p.E59K	NUP37_uc009zub.1_Missense_Mutation_p.E59K	NM_024057	NP_076962	Q8NFH4	NUP37_HUMAN	nucleoporin 37kDa	59					carbohydrate metabolic process|cell division|chromosome segregation|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	protein binding			ovary(1)	1						TGAATGCCTTCAACGTCTGCT	0.353000													13	42					0	0	0	0
SLC41A2	84102	broad.mit.edu	37	12	105322118	105322118	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:105322118C>T	uc001tla.2	-	1	355	c.188G>A	c.(187-189)GGC>GAC	p.G63D		NM_032148	NP_115524	Q96JW4	S41A2_HUMAN	solute carrier family 41, member 2	63	Extracellular.					integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			ovary(1)|skin(1)	2						TTGCCAAATGCCGTTTGCTTT	0.373000													3	10					0	0	0	0
TCP11L2	255394	broad.mit.edu	37	12	106708139	106708139	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:106708139C>G	uc001tln.2	+	3	335	c.161C>G	c.(160-162)ACA>AGA	p.T54R	TCP11L2_uc001tll.2_Missense_Mutation_p.T54R|TCP11L2_uc001tlm.2_Missense_Mutation_p.T54R	NM_152772	NP_689985	Q8N4U5	T11L2_HUMAN	t-complex 11 (mouse) like 2	54	Ser-rich.									ovary(3)	3						CTTTCAGCAACAAGCCCTCCA	0.378000													11	57					0	0	0	0
UNG	7374	broad.mit.edu	37	12	109539779	109539779	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:109539779C>G	uc001tnz.1	+	4	578	c.508C>G	c.(508-510)CAA>GAA	p.Q170E	UNG_uc001toa.1_Missense_Mutation_p.Q161E	NM_080911	NP_550433	P13051	UNG_HUMAN	uracil-DNA glycosylase isoform UNG2	170					base-excision repair|interspecies interaction between organisms	mitochondrion|nucleus	protein binding|uracil DNA N-glycosylase activity			lung(1)|central_nervous_system(1)	2						CTTTAGTGTTCAAAGGCCTGT	0.493000								BER_DNA_glycosylases	Immune_Deficiency_with_Hyper-IgM				9	42					0	0	0	0
ACACB	32	broad.mit.edu	37	12	109678960	109678960	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:109678960C>G	uc001tob.2	+	36	5015	c.4896C>G	c.(4894-4896)GTC>GTG	p.V1632V	ACACB_uc001toc.2_Silent_p.V1632V|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Silent_p.V298V	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1632					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	AGGCTGAGGTCAAGATCAACA	0.572000													64	202					0	0	0	0
ACACB	32	broad.mit.edu	37	12	109680251	109680251	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:109680251C>T	uc001tob.2	+	37	5151	c.5032C>T	c.(5032-5034)CAC>TAC	p.H1678Y	ACACB_uc001toc.2_Missense_Mutation_p.H1678Y|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Missense_Mutation_p.H344Y	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1678					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GATCATGTTTCACTCCTTCGG	0.517000													23	67					0	0	0	0
ACACB	32	broad.mit.edu	37	12	109685464	109685464	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:109685464G>A	uc001tob.2	+	40	5744	c.5625G>A	c.(5623-5625)CTG>CTA	p.L1875L	ACACB_uc001toc.2_Silent_p.L1875L|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Silent_p.L541L	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1875	Carboxyltransferase.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	TCAGCTCCCTGAACTCCGTCC	0.433000													27	85					0	0	0	0
ACACB	32	broad.mit.edu	37	12	109685501	109685501	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:109685501G>A	uc001tob.2	+	40	5781	c.5662G>A	c.(5662-5664)GAG>AAG	p.E1888K	ACACB_uc001toc.2_Missense_Mutation_p.E1888K|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Missense_Mutation_p.E554K	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1888	Carboxyltransferase.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GGAAGGAGGAGAGTCCAGGTA	0.443000													15	57					0	0	0	0
IFT81	28981	broad.mit.edu	37	12	110574587	110574587	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:110574587C>T	uc001tqi.2	+	8	833	c.703C>T	c.(703-705)CAT>TAT	p.H235Y	IFT81_uc001tqh.2_Missense_Mutation_p.H235Y|IFT81_uc001tqj.2_RNA|IFT81_uc001tqg.2_Missense_Mutation_p.H235Y	NM_001143779	NP_001137251	Q8WYA0	IFT81_HUMAN	intraflagellar transport 81-like isoform 1	235	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	intraflagellar transport particle B|microtubule-based flagellum				ovary(1)	1						AAAGCTATTTCATGCAGTGCA	0.358000													4	8					0	0	0	0
PPTC7	160760	broad.mit.edu	37	12	110983764	110983764	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:110983764C>T	uc001trh.1	-	3	751	c.523G>A	c.(523-525)GAG>AAG	p.E175K		NM_139283	NP_644812	Q8NI37	PPTC7_HUMAN	T-cell activation protein phosphatase 2C	175	PP2C-like.						metal ion binding|phosphoprotein phosphatase activity				0						TGCTGCTGCTCATCTGATCGG	0.562000													37	68					0	0	0	0
ATXN2	6311	broad.mit.edu	37	12	111956212	111956212	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:111956212G>A	uc001tsj.2	-	9	1648	c.1486C>T	c.(1486-1488)CCT>TCT	p.P496S	ATXN2_uc001tsh.2_Missense_Mutation_p.P231S|ATXN2_uc001tsi.2_Missense_Mutation_p.P207S|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsm.1_Missense_Mutation_p.P231S	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	496					cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						CTTTGTCCAGGAGGAATATAT	0.418000													14	68					0	0	0	0
TRAFD1	10906	broad.mit.edu	37	12	112580000	112580000	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:112580000G>T	uc001ttp.2	+	6	837	c.751G>T	c.(751-753)GAA>TAA	p.E251*	TRAFD1_uc001tto.2_Nonsense_Mutation_p.E251*|TRAFD1_uc010syj.1_RNA	NM_006700	NP_006691	O14545	TRAD1_HUMAN	TRAF-type zinc finger domain containing 1	251					negative regulation of innate immune response	intracellular	protein binding|zinc ion binding				0						TCTGCAAAATGAAGGCCAAGC	0.552000													24	44					9.39395e-14	9.74927e-14	1	0
CCDC60	160777	broad.mit.edu	37	12	119773055	119773055	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:119773055C>G	uc001txe.2	+	1	539	c.74C>G	c.(73-75)TCG>TGG	p.S25W		NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	25										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		TTTTATGCCTCGGAGAACCTA	0.413000													11	45					0	0	0	0
RPLP0	6175	broad.mit.edu	37	12	120636497	120636497	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:120636497C>T	uc001txp.2	-	6	748	c.511G>A	c.(511-513)GAA>AAA	p.E171K	RPLP0_uc001txq.2_Missense_Mutation_p.E171K|RPLP0_uc001txr.2_Intron|uc001txs.1_5'Flank	NM_053275	NP_444505	P05388	RLA0_HUMAN	ribosomal protein P0	171					endocrine pancreas development|interspecies interaction between organisms|ribosome biogenesis|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleus	protein binding|RNA binding|structural constituent of ribosome			ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AGCGTGGCTTCGCTGGCTCCC	0.522000													13	41					0	0	0	0
KDM2B	84678	broad.mit.edu	37	12	121868213	121868213	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:121868213G>C	uc001uat.2	-	23	3993	c.3889C>G	c.(3889-3891)CAT>GAT	p.H1297D	KDM2B_uc001uaq.2_Missense_Mutation_p.H737D|KDM2B_uc010szy.1_Missense_Mutation_p.H737D|KDM2B_uc001uar.2_Missense_Mutation_p.H888D|KDM2B_uc001uas.2_Missense_Mutation_p.H1228D|KDM2B_uc001uau.2_Silent_p.V556V|RNF34_uc001uam.1_Missense_Mutation_p.M480I|KDM2B_uc001uao.2_Missense_Mutation_p.H545D|KDM2B_uc010szx.1_Missense_Mutation_p.H545D|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	1297	LRR 6.				embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						AGGTCAATATGACAGATGTTT	0.468000													34	77					0	0	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834094	125834094	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:125834094C>T	uc001uhe.1	+	2	157	c.149C>T	c.(148-150)TCC>TTC	p.S50F		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	50	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GCAGAGGAGTCCTTTTTCCTT	0.537000													43	77					0	0	0	0
FZD10	11211	broad.mit.edu	37	12	130648351	130648351	+	Silent	SNP	C	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:130648351C>A	uc001uii.2	+	1	1320	c.864C>A	c.(862-864)ATC>ATA	p.I288I	uc001uig.1_5'Flank|uc001uih.1_5'Flank	NM_007197	NP_009128	Q9ULW2	FZD10_HUMAN	frizzled 10 precursor	288	Extracellular (Potential).				brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|gonad development|negative regulation of Rho GTPase activity|neuron differentiation|non-canonical Wnt receptor signaling pathway|positive regulation of JUN kinase activity|positive regulation of Rac GTPase activity|regulation of actin cytoskeleton organization|vasculature development	cell projection|cell surface|cytoplasm|integral to plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(3)|breast(1)|central_nervous_system(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.3e-06)|Epithelial(86;1.66e-05)|all cancers(50;5.18e-05)		CCGAGAGCATCGCCTGCGACC	0.642000													33	82					1.69901e-12	1.75498e-12	1	0
ULK1	8408	broad.mit.edu	37	12	132403152	132403152	+	Missense_Mutation	SNP	G	A	A	rs143018342		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:132403152G>A	uc001uje.2	+	23	2705	c.2437G>A	c.(2437-2439)GAC>AAC	p.D813N		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	813					autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		CAGCTTTGCCGACCCCATTAC	0.672000													6	16					0	0	0	0
RNF17	56163	broad.mit.edu	37	13	25376518	25376518	+	Splice_Site	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:25376518G>C	uc001upr.2	+	14	1800	c.1759_splice	c.e14-1	p.N587_splice	RNF17_uc010tdd.1_Splice_Site_p.N446_splice|RNF17_uc010aab.2_Splice_Site|RNF17_uc010tde.1_Splice_Site_p.N587_splice|RNF17_uc001ups.2_Splice_Site_p.N526_splice	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17						multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TTCTTGCACAGAATGAAGGCT	0.353000													13	17					0	0	0	0
RNF17	56163	broad.mit.edu	37	13	25376660	25376660	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:25376660G>C	uc001upr.2	+	14	1941	c.1900G>C	c.(1900-1902)GAT>CAT	p.D634H	RNF17_uc010tdd.1_Missense_Mutation_p.D493H|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.D634H|RNF17_uc001ups.2_Missense_Mutation_p.D573H	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	634					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		AATAAGCAGTGATATGCCTGT	0.318000													33	53					0	0	0	0
ATP8A2	51761	broad.mit.edu	37	13	26411340	26411340	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:26411340G>C	uc001uqk.2	+	29	2936	c.2794G>C	c.(2794-2796)GAG>CAG	p.E932Q	ATP8A2_uc010tdi.1_Missense_Mutation_p.E867Q|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Missense_Mutation_p.E482Q	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	892	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		GGGAATCTTTGAGAGGTCTTG	0.498000													27	58					0	0	0	0
KATNAL1	84056	broad.mit.edu	37	13	30782829	30782829	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:30782829G>C	uc001uss.2	-	11	1422	c.1321C>G	c.(1321-1323)CCA>GCA	p.P441A	KATNAL1_uc001ust.2_Missense_Mutation_p.P441A	NM_001014380	NP_001014402	Q9BW62	KATL1_HUMAN	katanin p60 subunit A-like 1	441						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity				0		Lung SC(185;0.0257)		all cancers(112;0.114)|OV - Ovarian serous cystadenocarcinoma(117;0.213)		ATTTCTTCTGGACTTAAGCCA	0.388000													7	30					0	0	0	0
KL	9365	broad.mit.edu	37	13	33590999	33590999	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:33590999G>A	uc001uus.2	+	1	429	c.421G>A	c.(421-423)GAG>AAG	p.E141K	KL_uc001uur.1_Intron	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	141	Glycosyl hydrolase-1 1.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		GGCGCTGCGCGAGCTCGGGGT	0.706000													6	26					0	0	0	0
FREM2	341640	broad.mit.edu	37	13	39263731	39263731	+	Silent	SNP	C	T	T	rs41292755	byFrequency	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:39263731C>T	uc001uwv.2	+	1	2559	c.2250C>T	c.(2248-2250)GAC>GAT	p.D750D		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	750	CSPG 4.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding	p.D750E(1)		ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CAGACACAGACGAAAATCACC	0.527000													9	42					0	0	0	0
TSC22D1	8848	broad.mit.edu	37	13	45147827	45147827	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:45147827G>A	uc001uzn.3	-	1	2875	c.2384C>T	c.(2383-2385)TCC>TTC	p.S795F	TSC22D1_uc001uzo.1_Intron	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	795	Gln-rich.				transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		AGTTAACAAGGAACTTTGGGA	0.473000													24	70					0	0	0	0
CYSLTR2	57105	broad.mit.edu	37	13	49281697	49281697	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:49281697C>T	uc010acx.1	+	6	1427	c.744C>T	c.(742-744)ACC>ACT	p.T248T	CYSLTR2_uc010acy.1_Silent_p.T248T|CYSLTR2_uc010acz.1_Silent_p.T248T|CYSLTR2_uc010ada.1_Silent_p.T248T|CYSLTR2_uc010adb.1_Silent_p.T248T|CYSLTR2_uc010adc.1_Silent_p.T248T|CYSLTR2_uc010add.1_Silent_p.T248T|CYSLTR2_uc010acw.1_Silent_p.T248T|CYSLTR2_uc001vck.2_Silent_p.T248T	NM_020377	NP_065110	Q9NS75	CLTR2_HUMAN	cysteinyl leukotriene receptor 2	248	Helical; Name=6; (Potential).				immune response	integral to membrane|plasma membrane				lung(2)	2		all_cancers(8;1.66e-53)|all_epithelial(8;1.96e-19)|all_lung(13;9.94e-09)|all_hematologic(8;7.13e-07)|Lung NSC(96;1.72e-06)|Breast(56;1.53e-05)|Acute lymphoblastic leukemia(8;6.86e-05)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0416)|Lung SC(185;0.0787)		GBM - Glioblastoma multiforme(99;1.19e-09)	Nedocromil(DB00716)	CACTGACCACCATCATCATCA	0.488000													13	27					0	0	0	0
LMO7	4008	broad.mit.edu	37	13	76409469	76409469	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:76409469G>C	uc001vjv.2	+	15	3388	c.2628G>C	c.(2626-2628)CAG>CAC	p.Q876H	LMO7_uc010thv.1_Missense_Mutation_p.Q827H|LMO7_uc001vjt.1_Missense_Mutation_p.Q775H|LMO7_uc010thw.1_Missense_Mutation_p.Q753H|LMO7_uc001vjw.1_Missense_Mutation_p.Q782H	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1161						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		AAAGCCTTCAGAGTTCTGTGA	0.353000													13	28					0	0	0	0
MYCBP2	23077	broad.mit.edu	37	13	77785339	77785339	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:77785339C>G	uc001vkf.2	-	24	3356	c.3265G>C	c.(3265-3267)GGT>CGT	p.G1089R	MYCBP2_uc010aev.2_Missense_Mutation_p.G493R	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	1089					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		AGACACACACCAAATCCTTGC	0.333000													10	45					0	0	0	0
GPC5	2262	broad.mit.edu	37	13	92101020	92101020	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:92101020G>A	uc010tif.1	+	2	535	c.169G>A	c.(169-171)GAT>AAT	p.D57N		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	57						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				TCCAGGACCTGATCTTCAGGT	0.413000													12	57					0	0	0	0
OXGR1	27199	broad.mit.edu	37	13	97639154	97639154	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:97639154G>C	uc001vmx.1	-	4	1104	c.860C>G	c.(859-861)TCT>TGT	p.S287C	OXGR1_uc010afr.1_Missense_Mutation_p.S287C	NM_080818	NP_543008	Q96P68	OXGR1_HUMAN	oxoglutarate (alpha-ketoglutarate) receptor 1	287	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.186)			TAATGGTCTAGAAACGATGTA	0.438000													17	59					0	0	0	0
TM9SF2	9375	broad.mit.edu	37	13	100193037	100193037	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:100193037C>T	uc001voj.1	+	8	1031	c.898C>T	c.(898-900)CAG>TAG	p.Q300*	TM9SF2_uc010afz.1_Nonsense_Mutation_p.Q135*	NM_004800	NP_004791	Q99805	TM9S2_HUMAN	transmembrane 9 superfamily member 2 precursor	300	Lumenal (Potential).				transport	endosome membrane|integral to plasma membrane				ovary(1)	1	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.218)					TACCCACATTCAGTGGTTTAG	0.393000													13	28					0	0	0	0
TPP2	7174	broad.mit.edu	37	13	103287982	103287982	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:103287982G>A	uc001vpi.3	+	12	1542	c.1439G>A	c.(1438-1440)AGA>AAA	p.R480K		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	480					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TCAGTCAGAAGAGCTCTAGAA	0.358000													19	55					0	0	0	0
F7	2155	broad.mit.edu	37	13	113760173	113760173	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:113760173C>T	uc001vsv.2	+	1	69	c.18C>T	c.(16-18)CTC>CTT	p.L6L	F7_uc010agp.1_Silent_p.L21L|F7_uc001vsw.2_Silent_p.L6L|F7_uc010tjt.1_Silent_p.L21L	NM_000131	NP_000122	P08709	FA7_HUMAN	coagulation factor VII isoform a precursor	6					anti-apoptosis|blood coagulation, extrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of leukocyte chemotaxis|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of positive chemotaxis|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|glycoprotein binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0364)|all_epithelial(44;0.0393)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0737)|Epithelial(84;0.213)|BRCA - Breast invasive adenocarcinoma(86;0.218)		Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Menadione(DB00170)	CCCAGGCCCTCAGGCTCCTCT	0.592000													4	9					0	0	0	0
F7	2155	broad.mit.edu	37	13	113772867	113772867	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:113772867G>C	uc001vsv.2	+	9	997	c.946G>C	c.(946-948)GAC>CAC	p.D316H	F7_uc001vsw.2_Missense_Mutation_p.D294H|F7_uc010tjt.1_Missense_Mutation_p.D247H	NM_000131	NP_000122	P08709	FA7_HUMAN	coagulation factor VII isoform a precursor	316	Peptidase S1.				anti-apoptosis|blood coagulation, extrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of leukocyte chemotaxis|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of positive chemotaxis|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|glycoprotein binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0364)|all_epithelial(44;0.0393)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0737)|Epithelial(84;0.213)|BRCA - Breast invasive adenocarcinoma(86;0.218)		Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Menadione(DB00170)	GGTCCTCACTGACCATGTGGT	0.677000													12	52					0	0	0	0
CUL4A	8451	broad.mit.edu	37	13	113899295	113899295	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr13:113899295G>C	uc010tjy.1	+	14	1377	c.1366G>C	c.(1366-1368)GAT>CAT	p.D456H	CUL4A_uc010tjx.1_Missense_Mutation_p.D356H|CUL4A_uc010agu.2_Missense_Mutation_p.D317H|CUL4A_uc010tjz.1_Missense_Mutation_p.D135H	NM_001008895	NP_001008895	Q13619	CUL4A_HUMAN	cullin 4A isoform 1	456					cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	ubiquitin protein ligase binding			central_nervous_system(2)|skin(1)	3	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.112)			TTATAAAAAAGATTTGGCAAA	0.373000													12	28					0	0	0	0
TEP1	7011	broad.mit.edu	37	14	20844028	20844028	+	Splice_Site	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:20844028C>T	uc001vxe.2	-	43	6290	c.6250_splice	c.e43-1	p.S2084_splice	TEP1_uc010ahj.1_5'Flank|TEP1_uc010ahk.2_Splice_Site_p.S1427_splice|TEP1_uc010tlf.1_Splice_Site|TEP1_uc010tlg.1_Splice_Site_p.S1976_splice|TEP1_uc010tlh.1_Splice_Site_p.S422_splice	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1						telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		AGAGGAGACTCTGGATAGGCC	0.567000													13	33					0	0	0	0
RNASE12	493901	broad.mit.edu	37	14	21058670	21058670	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:21058670C>T	uc001vxt.2	-	1	313	c.213G>A	c.(211-213)GAG>GAA	p.E71E	RNASE11_uc010ahv.2_5'Flank|RNASE11_uc010ahx.2_5'Flank|RNASE11_uc010ahw.2_5'Flank|RNASE11_uc001vxs.2_5'Flank|uc001vxu.1_RNA	NM_001024822	NP_001019993	Q5GAN4	RNS12_HUMAN	ribonuclease, RNase A family, 12 (non-active)	71						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(95;0.00238)		Epithelial(56;1.85e-06)|all cancers(55;1.46e-05)	GBM - Glioblastoma multiforme(265;0.013)		TTCGAGGCCTCTCATGGATGA	0.433000													16	48					0	0	0	0
FLJ10357	55701	broad.mit.edu	37	14	21548926	21548926	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:21548926C>G	uc001vzp.2	+	12	2510	c.2481C>G	c.(2479-2481)TTC>TTG	p.F827L	FLJ10357_uc001vzo.1_5'UTR|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Missense_Mutation_p.F113L	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	827					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		TCCGTGCTTTCAGCGCTGAGG	0.637000													16	41					0	0	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21794056	21794056	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:21794056C>T	uc001wag.2	+	16	2434	c.2434C>T	c.(2434-2436)CGG>TGG	p.R812W	RPGRIP1_uc001wah.2_Missense_Mutation_p.R454W|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001wak.2_Missense_Mutation_p.R287W|RPGRIP1_uc010aim.2_Missense_Mutation_p.R195W|RPGRIP1_uc001wal.2_Missense_Mutation_p.R171W|RPGRIP1_uc001wam.2_Missense_Mutation_p.R129W	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	812	C2.		R -> H (does not affect the interaction with NPHP4).		response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		CTGTGGCCTCCGGAGTCGATG	0.507000													9	21					0	0	0	0
SALL2	6297	broad.mit.edu	37	14	21992852	21992852	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:21992852C>T	uc001wbe.2	-	2	1292	c.1010G>A	c.(1009-1011)CGA>CAA	p.R337Q	SALL2_uc010tly.1_Missense_Mutation_p.R335Q|SALL2_uc010tlz.1_Missense_Mutation_p.R200Q|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Missense_Mutation_p.R202Q|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	337							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		CTCAAGGCCTCGGGCTGCCCC	0.607000													6	18					0	0	0	0
LTB4R2	56413	broad.mit.edu	37	14	24780814	24780814	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:24780814G>A	uc001woq.1	+	1	2654	c.1037G>A	c.(1036-1038)CGA>CAA	p.R346Q	CIDEB_uc001woo.2_5'Flank|CIDEB_uc001wop.2_5'Flank|LTB4R2_uc010alo.2_Missense_Mutation_p.R315Q|LTB4R2_uc001wor.2_Missense_Mutation_p.R315Q|LTB4R_uc001wos.2_5'UTR|LTB4R_uc010alp.2_5'Flank	NM_019839	NP_062813	Q9NPC1	LT4R2_HUMAN	leukotriene B4 receptor 2	346	Cytoplasmic (Potential).				chemotaxis|negative regulation of adenylate cyclase activity	integral to plasma membrane					0				GBM - Glioblastoma multiforme(265;0.018)		GGGGAGGCCCGAGGGGGCGGC	0.687000													22	54					0	0	0	0
HEATR5A	25938	broad.mit.edu	37	14	31771573	31771573	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:31771573C>G	uc001wrf.3	-	27	4590	c.4513G>C	c.(4513-4515)GAA>CAA	p.E1505Q	HEATR5A_uc010ami.2_Intron	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	1792							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		CGGCTCTTTTCTGCCCGGGCC	0.483000													7	10					0	0	0	0
AKAP6	9472	broad.mit.edu	37	14	33165305	33165305	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:33165305C>T	uc001wrq.2	+	9	3159	c.2989C>T	c.(2989-2991)CAT>TAT	p.H997Y	AKAP6_uc010aml.2_Missense_Mutation_p.H994Y	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	997					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GCAGCAGCAGCATCTTTACAA	0.478000													25	32					0	0	0	0
SSTR1	6751	broad.mit.edu	37	14	38678892	38678892	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:38678892C>T	uc001wul.1	+	3	915	c.298C>T	c.(298-300)CTG>TTG	p.L100L	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	100	Helical; Name=2; (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	CATCCTAAATCTGGCCATTGC	0.582000													42	102					0	0	0	0
PNN	5411	broad.mit.edu	37	14	39650039	39650039	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:39650039G>A	uc001wuw.3	+	9	1223	c.1126G>A	c.(1126-1128)GAG>AAG	p.E376K		NM_002687	NP_002678	Q9H307	PININ_HUMAN	pinin, desmosome associated protein	376	Potential.|Glu-rich.				cell adhesion|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|desmosome|intermediate filament|nuclear speck	DNA binding|protein binding|structural molecule activity			ovary(1)	1	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0119)		aagggaaagtgagaagcagca	0.174000													9	19					0	0	0	0
CTAGE5	4253	broad.mit.edu	37	14	39796071	39796071	+	Nonsense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:39796071C>G	uc001wvg.3	+	20	2012	c.1676C>G	c.(1675-1677)TCA>TGA	p.S559*	CTAGE5_uc010tqe.1_Nonsense_Mutation_p.S521*|CTAGE5_uc001wuz.3_Nonsense_Mutation_p.S547*|CTAGE5_uc001wuy.3_Nonsense_Mutation_p.S479*|CTAGE5_uc001wvb.3_Nonsense_Mutation_p.S487*|CTAGE5_uc001wvc.3_Nonsense_Mutation_p.S461*|CTAGE5_uc001wva.3_Nonsense_Mutation_p.S530*|CTAGE5_uc001wvh.3_Nonsense_Mutation_p.S516*|CTAGE5_uc001wvf.3_Nonsense_Mutation_p.S484*|CTAGE5_uc001wvi.3_Nonsense_Mutation_p.S564*|CTAGE5_uc010amz.2_Nonsense_Mutation_p.S175*|CTAGE5_uc001wvj.3_Nonsense_Mutation_p.S530*	NM_005930	NP_005921	O15320	CTGE5_HUMAN	CTAGE family, member 5 isoform 1	559	Pro-rich.						enzyme activator activity|protein binding				0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0475)		TAATTAGGCTCACGAGGCCCA	0.358000													16	42					0	0	0	0
FAM179B	23116	broad.mit.edu	37	14	45475280	45475280	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:45475280G>A	uc001wvv.2	+	5	2923	c.2714G>A	c.(2713-2715)CGA>CAA	p.R905Q	FAM179B_uc001wvw.2_Missense_Mutation_p.R905Q|FAM179B_uc010anc.2_RNA|FAM179B_uc001wvu.2_Missense_Mutation_p.R905Q	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	905							binding			skin(2)|upper_aerodigestive_tract(1)	3						TCTTCCCGACGAGGTCTAAAT	0.423000													26	85					0	0	0	0
C14orf104	55172	broad.mit.edu	37	14	50101007	50101007	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:50101007G>C	uc001wws.3	-	1	942	c.861C>G	c.(859-861)ATC>ATG	p.I287M	SDCCAG1_uc010anj.1_Intron|C14orf104_uc001wwt.3_Missense_Mutation_p.I287M	NM_018139	NP_060609	Q9NVR5	KTU_HUMAN	kintoun isoform 1	287					axonemal dynein complex assembly|ciliary cell motility|flagellar cell motility	cytoplasm					0	all_epithelial(31;0.0021)|Breast(41;0.0124)					GCGGCAGTTCGATGGTGATCA	0.657000									Kartagener_syndrome				10	33					0	0	0	0
SOS2	6655	broad.mit.edu	37	14	50626418	50626418	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:50626418G>A	uc001wxs.3	-	10	1681	c.1583C>T	c.(1582-1584)TCT>TTT	p.S528F	SOS2_uc010tql.1_Missense_Mutation_p.S495F|SOS2_uc010tqm.1_RNA|SOS2_uc001wxt.2_Missense_Mutation_p.S216F	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	528	PH.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					TTCTTCAGCAGACTTAGCAGC	0.328000													18	55					0	0	0	0
PYGL	5836	broad.mit.edu	37	14	51381452	51381452	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:51381452G>C	uc001wyu.2	-	12	1612	c.1485C>G	c.(1483-1485)CTC>CTG	p.L495L	PYGL_uc010tqq.1_Silent_p.L461L|PYGL_uc001wyv.2_Silent_p.L169L	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	495					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	CTGGGTTGCAGAGTAGGAGCC	0.493000													9	30					0	0	0	0
C14orf39	317761	broad.mit.edu	37	14	60923756	60923756	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:60923756C>T	uc001xez.3	-	15	1347	c.1237G>A	c.(1237-1239)GAG>AAG	p.E413K	C14orf39_uc010apo.2_Missense_Mutation_p.E124K	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	413										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TCAGCTCTCTCTTCTACTTCA	0.353000													30	60					0	0	0	0
ZBTB1	22890	broad.mit.edu	37	14	64989937	64989937	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:64989937G>C	uc001xhh.3	+	4	2146	c.1715G>C	c.(1714-1716)AGA>ACA	p.R572T	ZBTB1_uc010aqg.2_Missense_Mutation_p.R572T|ZBTB1_uc001xhi.2_Missense_Mutation_p.R572T	NM_001123329	NP_001116801	Q9Y2K1	ZBTB1_HUMAN	zinc finger and BTB domain containing 1 isoform	572					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		all_lung(585;0.000567)|Myeloproliferative disorder(585;0.0255)|all_neural(303;0.0294)		UCEC - Uterine corpus endometrioid carcinoma (185;0.0182)|all cancers(60;3.78e-43)|OV - Ovarian serous cystadenocarcinoma(108;1.22e-20)|BRCA - Breast invasive adenocarcinoma(234;6.75e-06)|KIRC - Kidney renal clear cell carcinoma(182;0.00269)|STAD - Stomach adenocarcinoma(64;0.012)		GAAAATGAAAGAGATCACAGA	0.368000													18	38					0	0	0	0
PCNX	22990	broad.mit.edu	37	14	71575426	71575426	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:71575426C>T	uc001xmo.2	+	34	6853	c.6407C>T	c.(6406-6408)TCA>TTA	p.S2136L	PCNX_uc010are.1_Missense_Mutation_p.S2025L|PCNX_uc010arf.1_Missense_Mutation_p.S924L|PCNX_uc001xmp.2_Missense_Mutation_p.S220L	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	2136	Ser-rich.					integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		AGCCGGCATTCATCCCTCCGG	0.572000													31	63					0	0	0	0
ACOT2	10965	broad.mit.edu	37	14	74036030	74036030	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:74036030G>C	uc001xon.3	+	1	259	c.86G>C	c.(85-87)CGA>CCA	p.R29P	ACOT1_uc010tuc.1_Intron|ACOT2_uc001xom.2_5'UTR	NM_006821	NP_006812	P49753	ACOT2_HUMAN	acyl-CoA thioesterase 2	29					acyl-CoA metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process	mitochondrion	carboxylesterase activity|palmitoyl-CoA hydrolase activity|protein binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0033)|OV - Ovarian serous cystadenocarcinoma(108;0.0639)		GCTGTCCTTCGAGCGTCCCGG	0.562000													51	118					0	0	0	0
C14orf115	55237	broad.mit.edu	37	14	74824951	74824951	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:74824951G>A	uc001xpw.3	+	2	1656	c.1465G>A	c.(1465-1467)GAG>AAG	p.E489K		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	489					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		TGCCACAGGTGAGGACCCTCC	0.662000													28	56					0	0	0	0
YLPM1	56252	broad.mit.edu	37	14	75230935	75230935	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:75230935C>T	uc001xqj.3	+	1	867	c.743C>T	c.(742-744)CCA>CTA	p.P248L		NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	88	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		CTAGCTCCACCACCACCGTCC	0.557000													23	37					0	0	0	0
C14orf118	55668	broad.mit.edu	37	14	76621147	76621147	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:76621147G>A	uc001xsh.2	+	2	527	c.441G>A	c.(439-441)CTG>CTA	p.L147L	C14orf118_uc001xsi.2_Silent_p.L147L|C14orf118_uc001xsj.1_Silent_p.L147L|C14orf118_uc001xsk.1_Silent_p.L147L|C14orf118_uc001xsl.2_RNA	NM_017926	NP_060396	Q9NWQ4	CN118_HUMAN	hypothetical protein LOC55668 isoform 1	147										ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.0172)		AGCAGAAGCTGAAGGTGTCAG	0.542000													13	17					0	0	0	0
GALC	2581	broad.mit.edu	37	14	88452837	88452837	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:88452837G>A	uc001xvt.2	-	4	837	c.438C>T	c.(436-438)CTC>CTT	p.L146L	GALC_uc010tvx.1_Silent_p.L120L|GALC_uc010tvy.1_Silent_p.L123L|GALC_uc010tvz.1_Silent_p.L90L|GALC_uc001xvu.1_Silent_p.L146L	NM_000153	NP_000144	P54803	GALC_HUMAN	galactosylceramidase isoform a precursor	146					carbohydrate metabolic process|galactosylceramide catabolic process	lysosome	cation binding|galactosylceramidase activity				0						TCTTACCAATGAGTGTAATAT	0.373000													9	16					0	0	0	0
LGMN	5641	broad.mit.edu	37	14	93179217	93179217	+	Splice_Site	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:93179217C>T	uc001yav.2	-	9	870	c.544_splice	c.e9-1	p.M182_splice	LGMN_uc001yat.2_Splice_Site_p.M182_splice|LGMN_uc001yau.2_Splice_Site_p.M182_splice|LGMN_uc001yaw.2_Splice_Site_p.M182_splice|LGMN_uc010aul.2_Splice_Site_p.M63_splice|LGMN_uc001yax.2_Splice_Site_p.M182_splice|LGMN_uc001yay.2_Splice_Site_p.M182_splice	NM_001008530	NP_001008530	Q99538	LGMN_HUMAN	legumain preproprotein						hormone biosynthetic process|negative regulation of neuron apoptosis|vitamin D metabolic process	lysosome	cysteine-type endopeptidase activity|protein serine/threonine kinase activity			skin(1)	1		all_cancers(154;0.0706)		COAD - Colon adenocarcinoma(157;0.224)		AGAACACCATCTGTGAGGCAG	0.587000													8	18					0	0	0	0
GOLGA5	9950	broad.mit.edu	37	14	93273116	93273116	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:93273116C>T	uc001yaz.1	+	3	762	c.580C>T	c.(580-582)CAA>TAA	p.Q194*		NM_005113	NP_005104	Q8TBA6	GOGA5_HUMAN	Golgi autoantigen, golgin subfamily a, 5	194	Cytoplasmic (Potential).				Golgi organization	cis-Golgi network|integral to membrane	ATP binding|protein homodimerization activity|protein tyrosine kinase activity|Rab GTPase binding			ovary(2)|lung(1)	3		all_cancers(154;0.0934)		COAD - Colon adenocarcinoma(157;0.222)		CCATGAAGGTCAAGAGGAATC	0.408000			T	RET	papillary thyroid								4	12					0	0	0	0
FAM181A	90050	broad.mit.edu	37	14	94394950	94394950	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:94394950G>C	uc001ybz.1	+	3	812	c.505G>C	c.(505-507)GAA>CAA	p.E169Q	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Missense_Mutation_p.E107Q|FAM181A_uc001yca.1_Missense_Mutation_p.E107Q	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	169											0						CTACAGGGAGGAATGTCTTGC	0.642000													10	35					0	0	0	0
SERPINA10	51156	broad.mit.edu	37	14	94756481	94756481	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:94756481C>G	uc001yct.2	-	2	916	c.450G>C	c.(448-450)GAG>GAC	p.E150D	SERPINA10_uc001ycu.3_Missense_Mutation_p.E150D	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	150					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		GGGAGAGGGTCTCTCTGAGTC	0.542000													27	40					0	0	0	0
ATG2B	55102	broad.mit.edu	37	14	96757999	96757999	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:96757999C>G	uc001yfi.2	-	38	5882	c.5517G>C	c.(5515-5517)TTG>TTC	p.L1839F		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	1839										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		CCAGACCAATCAAAATCCCAG	0.333000													15	53					0	0	0	0
DLK1	8788	broad.mit.edu	37	14	101200978	101200978	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:101200978C>T	uc001yhs.3	+	5	1050	c.897C>T	c.(895-897)CTC>CTT	p.L299L	DLK1_uc001yhu.3_Intron	NM_003836	NP_003827	P80370	DLK1_HUMAN	delta-like 1 homolog precursor	299	Extracellular (Potential).				multicellular organismal development	extracellular space|integral to membrane|soluble fraction				ovary(2)|breast(1)|skin(1)	4		Melanoma(154;0.155)				CCCCTCTCCTCACCGAGGGCC	0.622000													19	49					0	0	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102505826	102505826	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:102505826G>A	uc001yks.2	+	61	11702	c.11538G>A	c.(11536-11538)CTG>CTA	p.L3846L		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	3846					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						ACCCGAACCTGAAGGGTGTCA	0.542000													19	31					0	0	0	0
HSP90AA1	3320	broad.mit.edu	37	14	102551177	102551177	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:102551177C>G	uc001yku.3	-	5	1012	c.822G>C	c.(820-822)AAG>AAC	p.K274N	HSP90AA1_uc001ykv.3_Missense_Mutation_p.K396N|HSP90AA1_uc001ykw.1_Missense_Mutation_p.K95N|HSP90AA1_uc001ykx.1_Missense_Mutation_p.K263N	NM_005348	NP_005339	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 2	274					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	tcttcttcttcttgtcaccat	0.229000													4	15					0	0	0	0
HSP90AA1	3320	broad.mit.edu	37	14	102551332	102551332	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:102551332C>G	uc001yku.3	-	5	857	c.667G>C	c.(667-669)GAG>CAG	p.E223Q	HSP90AA1_uc001ykv.3_Missense_Mutation_p.E345Q|HSP90AA1_uc001ykw.1_Missense_Mutation_p.E44Q|HSP90AA1_uc001ykx.1_Missense_Mutation_p.E212Q	NM_005348	NP_005339	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 2	223					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	CGTTCCTTCTCCACCTTCAAA	0.343000													6	17					0	0	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103406451	103406451	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:103406451G>A	uc001ymi.1	-	32	4755	c.4523C>T	c.(4522-4524)TCT>TTT	p.S1508F		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	1508	CNH.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		GGTGCCTTCAGAGTTCAGGGG	0.617000													10	26					0	0	0	0
MARK3	4140	broad.mit.edu	37	14	103932719	103932719	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:103932719G>C	uc001ymz.3	+	10	1603	c.937G>C	c.(937-939)GAA>CAA	p.E313Q	MARK3_uc001ymx.3_Missense_Mutation_p.E313Q|MARK3_uc001ymw.3_Missense_Mutation_p.E313Q|MARK3_uc001yna.3_Missense_Mutation_p.E313Q|MARK3_uc001ymy.3_Missense_Mutation_p.E234Q|MARK3_uc010awp.2_Missense_Mutation_p.E336Q|MARK3_uc010tyb.1_Missense_Mutation_p.E124Q	NM_001128918	NP_001122390	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	313							ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|stomach(1)	4		Melanoma(154;0.155)	Epithelial(46;0.241)			AGGGCATGAAGAAGATGAACT	0.363000													8	13					0	0	0	0
TRMT61A	115708	broad.mit.edu	37	14	103999011	103999011	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:103999011G>A	uc001yng.2	+	3	543	c.424G>A	c.(424-426)GAG>AAG	p.E142K	TRMT61A_uc010aws.2_5'UTR	NM_152307	NP_689520	Q96FX7	TRM61_HUMAN	tRNA(m1A58)-methyltransferase subunit TRM61	142						nucleus	protein binding|tRNA (adenine-N1-)-methyltransferase activity				0						GCAGCGGGCAGAGAAGGCCCG	0.682000													7	29					0	0	0	0
PPP1R13B	23368	broad.mit.edu	37	14	104205238	104205238	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:104205238C>T	uc001yof.1	-	13	2998	c.2715G>A	c.(2713-2715)CAG>CAA	p.Q905Q	PPP1R13B_uc010awv.1_RNA	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	905					apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				AGATGATCCTCTGCACCAGAT	0.642000													41	140					0	0	0	0
ASPG	374569	broad.mit.edu	37	14	104571013	104571013	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:104571013C>G	uc001yoq.1	+	9	1051	c.991C>G	c.(991-993)CTG>GTG	p.L331V	ASPG_uc001yoo.1_Missense_Mutation_p.L359V|ASPG_uc001yop.1_Missense_Mutation_p.L331V|ASPG_uc001yor.1_Missense_Mutation_p.L331V	NM_001080464	NP_001073933	Q86U10	LPP60_HUMAN	60 kDa lysophospholipase	331	Asparaginase.				lipid catabolic process		1-alkyl-2-acetylglycerophosphocholine esterase activity|asparaginase activity|lysophospholipase activity				0						GGAGGCCGCCCTGGCCAAGCT	0.682000													19	20					0	0	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409745	105409745	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:105409745C>T	uc010axc.1	-	7	12163	c.12043G>A	c.(12043-12045)GAC>AAC	p.D4015N	AHNAK2_uc001ypx.2_Missense_Mutation_p.D3915N	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4015						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ACGCTGAGGTCAGTGGCCTTG	0.657000													39	97					0	0	0	0
AHNAK2	113146	broad.mit.edu	37	14	105410277	105410277	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:105410277C>G	uc010axc.1	-	7	11631	c.11511G>C	c.(11509-11511)GTG>GTC	p.V3837V	AHNAK2_uc001ypx.2_Silent_p.V3737V	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3837						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			AGGGGAGACTCACATCGGCCT	0.592000													49	133					0	0	0	0
AHNAK2	113146	broad.mit.edu	37	14	105411033	105411033	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:105411033C>G	uc010axc.1	-	7	10875	c.10755G>C	c.(10753-10755)CTG>CTC	p.L3585L	AHNAK2_uc001ypx.2_Silent_p.L3485L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3585						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGGGGCCTTTCAGGTCCAGCT	0.602000													36	71					0	0	0	0
BRF1	2972	broad.mit.edu	37	14	105692409	105692409	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:105692409C>G	uc001yqp.2	-	10	1408	c.1045G>C	c.(1045-1047)GAT>CAT	p.D349H	BRF1_uc010tyo.1_Missense_Mutation_p.D234H|BRF1_uc010typ.1_Missense_Mutation_p.D234H|BRF1_uc001yql.2_Missense_Mutation_p.D145H|BRF1_uc001yqo.2_Missense_Mutation_p.D111H|BRF1_uc010axg.1_Missense_Mutation_p.D322H|BRF1_uc001yqn.2_Intron|BRF1_uc010axh.1_Intron	NM_001519	NP_001510	Q92994	TF3B_HUMAN	transcription initiation factor IIIB isoform 1	349					positive regulation of transcription, DNA-dependent|rRNA transcription|transcription initiation from RNA polymerase III promoter|tRNA transcription	transcription factor TFIIIB complex	translation initiation factor activity|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		all_cancers(154;0.0231)|all_epithelial(191;0.0694)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00753)|all cancers(16;0.00925)|Epithelial(46;0.0221)	Epithelial(152;0.14)		GACTCACCATCTTTTGCCAGG	0.343000													15	48					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	106602645	106602645	+	RNA	SNP	C	T	T	rs11845324	by1000genomes	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr14:106602645C>T	uc010tyt.1	-	1205		c.26932G>A								Parts of antibodies, mostly variable regions.												0						TGCTCGTGGACGTGTCCCTGG	0.512000													18	79					0	0	0	0
OR4M2	390538	broad.mit.edu	37	15	22369149	22369149	+	Missense_Mutation	SNP	A	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:22369149A>G	uc010tzu.1	+	1	574	c.574A>G	c.(574-576)ACC>GCC	p.T192A	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CTGTGCCAACACCTTCCCAGA	0.478000													24	100					0	0	0	0
CYFIP1	23191	broad.mit.edu	37	15	22933613	22933613	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:22933613C>T	uc001yus.2	+	7	726	c.622C>T	c.(622-624)CAG>TAG	p.Q208*	CYFIP1_uc001yut.2_Nonsense_Mutation_p.Q208*|CYFIP1_uc010aya.1_Nonsense_Mutation_p.Q236*	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	208					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		CCAGGAATCGCAGAATCTGTC	0.502000													9	16					0	0	0	0
SNORD115-2	100033437	broad.mit.edu	37	15	25417705	25417705	+	5'Flank	SNP	G	A	A	rs34830686	by1000genomes	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:25417705G>A	uc001yyr.1	+						IPW_uc001yyp.1_RNA|IPW_uc010aym.1_RNA|uc001yys.1_5'Flank|SNORD115-3_uc001yyt.1_5'Flank	NR_003294				Homo sapiens small nucleolar RNA, C/D box 115-2 (SNORD115-2), non-coding RNA.												0						CTGGCACTCTGGTCTCCTGCA	0.617000													4	13					0	0	0	0
HERC2	8924	broad.mit.edu	37	15	28359761	28359761	+	Missense_Mutation	SNP	T	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:28359761T>C	uc001zbj.2	-	90	14016	c.13910A>G	c.(13909-13911)TAT>TGT	p.Y4637C	HERC2_uc001zbi.2_Missense_Mutation_p.Y326C	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4637	HECT.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CACCAACCTATAGTTTATCGC	0.502000													8	37					0	0	0	0
HERC2	8924	broad.mit.edu	37	15	28380685	28380685	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:28380685C>T	uc001zbj.2	-	79	12275	c.12169G>A	c.(12169-12171)GAA>AAA	p.E4057K		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4057					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		ACTTCTCCTTCTGAAGACAGG	0.438000													37	108					0	0	0	0
ZNF770	54989	broad.mit.edu	37	15	35275626	35275626	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:35275626C>T	uc001ziw.2	-	3	321	c.10G>A	c.(10-12)GAA>AAA	p.E4K		NM_014106	NP_054825	Q6IQ21	ZN770_HUMAN	zinc finger protein 770	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(122;4.59e-10)|all_lung(180;8.78e-09)		all cancers(64;1.97e-18)|GBM - Glioblastoma multiforme(113;2.11e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0643)		AAATTGTTTTCAGCCATCATA	0.294000													8	27					0	0	0	0
FSIP1	161835	broad.mit.edu	37	15	40068691	40068691	+	Nonsense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:40068691G>C	uc001zki.2	-	2	253	c.35C>G	c.(34-36)TCA>TGA	p.S12*		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	12										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		AGCTGGTTTTGAAATTCCATC	0.353000													9	40					0	0	0	0
CDAN1	146059	broad.mit.edu	37	15	43017724	43017724	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:43017724C>G	uc001zql.2	-	26	3530	c.3413G>C	c.(3412-3414)AGA>ACA	p.R1138T	CDAN1_uc001zqj.2_RNA|CDAN1_uc001zqk.2_Missense_Mutation_p.R464T	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	1138						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		CCCCACATTTCTTGGGCTCAG	0.587000													16	56					0	0	0	0
CDAN1	146059	broad.mit.edu	37	15	43022882	43022882	+	Silent	SNP	C	T	T	rs148759214		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:43022882C>T	uc001zql.2	-	14	2205	c.2088G>A	c.(2086-2088)CTG>CTA	p.L696L	CDAN1_uc001zqj.2_RNA|CDAN1_uc001zqk.2_Nonsense_Mutation_p.W22*	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	696						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		GAAACTCCACCAGCCAGGGCA	0.632000													5	14					0	0	0	0
CDAN1	146059	broad.mit.edu	37	15	43022925	43022925	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:43022925C>T	uc001zql.2	-	14	2162	c.2045G>A	c.(2044-2046)CGA>CAA	p.R682Q	CDAN1_uc001zqj.2_RNA|CDAN1_uc001zqk.2_Missense_Mutation_p.E8K	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	682						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		CTGCAGCCCTCGCTGCAGCAG	0.637000													3	6					0	0	0	0
MAP1A	4130	broad.mit.edu	37	15	43814521	43814521	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:43814521C>T	uc001zrt.2	+	4	1317	c.850C>T	c.(850-852)CGG>TGG	p.R284W		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	284						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	AGAAAAGCTTCGGCATCTGGA	0.552000													13	23					0	0	0	0
MAP1A	4130	broad.mit.edu	37	15	43821418	43821418	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:43821418G>A	uc001zrt.2	+	4	8214	c.7747G>A	c.(7747-7749)GAG>AAG	p.E2583K		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	2583						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GGCTGACCCCGAGGGGCTCAG	0.667000													16	37					0	0	0	0
SECISBP2L	9728	broad.mit.edu	37	15	49319637	49319637	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:49319637C>G	uc001zxe.1	-	7	1094	c.960G>C	c.(958-960)CAG>CAC	p.Q320H	SECISBP2L_uc001zxd.1_Missense_Mutation_p.Q320H|SECISBP2L_uc010bep.1_Missense_Mutation_p.Q82H|SECISBP2L_uc010beq.1_Missense_Mutation_p.Q237H	NM_014701	NP_055516	Q93073	SBP2L_HUMAN	SECIS binding protein 2-like	320										breast(1)|skin(1)	2						AAGGTTTTTTCTGAGTTGCCT	0.308000													18	51					0	0	0	0
ONECUT1	3175	broad.mit.edu	37	15	53081071	53081071	+	Missense_Mutation	SNP	C	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:53081071C>A	uc002aci.1	-	1	1139	c.1011G>T	c.(1009-1011)TGG>TGT	p.W337C		NM_004498	NP_004489	Q9UBC0	HNF6_HUMAN	one cut homeobox 1	337	CUT.				endocrine pancreas development	nucleus	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding				0				all cancers(107;0.0708)		TGAGTTTGCTCCAGGGTTTGG	0.647000													16	31					3.52763e-06	3.59311e-06	1	0
HSP90AB4P	664618	broad.mit.edu	37	15	58985164	58985164	+	Missense_Mutation	SNP	T	G	G	rs4774310	by1000genomes	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:58985164T>G	uc002afh.1	-	1	161	c.161A>C	c.(160-162)AAC>ACC	p.N54T	ADAM10_uc002afd.1_Intron|ADAM10_uc010bgc.1_Intron|ADAM10_uc010ugz.1_Intron|ADAM10_uc002afe.1_Intron|ADAM10_uc002afg.2_Intron	NR_002927				RecName: Full=Putative heat shock protein HSP 90-beta 4;												0						TTCCCGAGGGTTGGGGATGAT	0.463000													5	24					0	0	0	0
LRRC49	54839	broad.mit.edu	37	15	71193302	71193302	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:71193302C>T	uc002asw.2	+	4	482	c.235C>T	c.(235-237)CCT>TCT	p.P79S	LRRC49_uc002asu.2_Missense_Mutation_p.P69S|LRRC49_uc002asx.2_Missense_Mutation_p.P35S|LRRC49_uc010ukf.1_Missense_Mutation_p.P84S|LRRC49_uc002asy.2_5'UTR|LRRC49_uc002asz.2_Missense_Mutation_p.P51S	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	79						cytoplasm|microtubule				ovary(1)	1						GTCATCATTTCCTATTCTTCA	0.308000													15	23					0	0	0	0
NRG4	145957	broad.mit.edu	37	15	76248315	76248315	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:76248315C>T	uc002bbo.2	-	5	473	c.289G>A	c.(289-291)GAT>AAT	p.D97N	NRG4_uc010bkm.1_RNA|NRG4_uc002bbn.2_RNA|NRG4_uc010bkn.2_RNA|NRG4_uc010bko.2_RNA	NM_138573	NP_612640	Q8WWG1	NRG4_HUMAN	neuregulin 4	97	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane	growth factor activity				0						AGGTTGATATCATACTGGACT	0.408000													16	30					0	0	0	0
WDR61	80349	broad.mit.edu	37	15	78581964	78581964	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:78581964C>T	uc002bdn.2	-	7	635	c.559G>A	c.(559-561)GAA>AAA	p.E187K	WDR61_uc002bdo.2_Missense_Mutation_p.E187K	NM_025234	NP_079510	Q9GZS3	WDR61_HUMAN	WD repeat domain 61	187	WD 4.						protein binding			ovary(1)|skin(1)	2						TATATACCTTCCAGGGTATGC	0.363000													12	28					0	0	0	0
FAM154B	283726	broad.mit.edu	37	15	82575232	82575232	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:82575232G>T	uc002bgv.2	+	3	1095	c.1026G>T	c.(1024-1026)AAG>AAT	p.K342N	FAM154B_uc010unr.1_Missense_Mutation_p.K327N|FAM154B_uc010uns.1_RNA	NM_001008226	NP_001008227	Q658L1	F154B_HUMAN	hypothetical protein LOC283726	342										skin(2)	2						TTGCTTTTAAGAGTTCTGTTC	0.403000													8	27					0.00307968	0.00309377	1	0
ZNF592	9640	broad.mit.edu	37	15	85327563	85327563	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:85327563G>A	uc002bld.2	+	4	1993	c.1657G>A	c.(1657-1659)GAG>AAG	p.E553K	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	553					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			ACTGATTGTAGAGGTCTTCAA	0.592000													21	61					0	0	0	0
KIF7	374654	broad.mit.edu	37	15	90172735	90172735	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:90172735C>T	uc002bof.2	-	17	3465	c.3388G>A	c.(3388-3390)GAG>AAG	p.E1130K	KIF7_uc010upw.1_Missense_Mutation_p.E616K|C15orf42_uc010upv.1_RNA	NM_198525	NP_940927	Q2M1P5	KIF7_HUMAN	kinesin family member 7	1130	Potential.				microtubule-based movement|negative regulation of smoothened signaling pathway|positive regulation of smoothened signaling pathway	cilium	ATP binding|microtubule motor activity|protein binding			ovary(2)|lung(1)	3	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			CTCTGCTGCTCCTCCAGCTGC	0.647000													32	110					0	0	0	0
TTLL13	440307	broad.mit.edu	37	15	90801269	90801269	+	Splice_Site	SNP	G	A	A	rs146502095		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:90801269G>A	uc002bpd.1	+	9	1224	c.936_splice	c.e9-1	p.R312_splice	TTLL13_uc002bpe.1_Intron	NM_001029964	NP_001025135	A6NNM8	TTL13_HUMAN	tubulin tyrosine ligase-like family, member 13						protein modification process		ATP binding|tubulin-tyrosine ligase activity				0	Melanoma(11;0.00551)|Lung NSC(78;0.0178)|all_lung(78;0.0378)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|BRCA - Breast invasive adenocarcinoma(143;0.0323)|Kidney(142;0.0514)			GGGCCTCGCAGGAAGCTGTCG	0.572000													7	21					0	0	0	0
SV2B	9899	broad.mit.edu	37	15	91795215	91795215	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:91795215C>T	uc002bqv.2	+	2	1009	c.618C>T	c.(616-618)CTC>CTT	p.L206L	SV2B_uc002bqt.2_Silent_p.L206L|SV2B_uc010uqv.1_Silent_p.L55L|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	206	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TCTGCCGACTCATCTCAGGCA	0.547000													13	60					0	0	0	0
TARSL2	123283	broad.mit.edu	37	15	102252183	102252183	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr15:102252183G>C	uc002bxm.2	-	5	767	c.712C>G	c.(712-714)CAC>GAC	p.H238D	TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	238					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CCAAGAATGTGAGCACTGGAG	0.443000													7	19					0	0	0	0
MSLNL	401827	broad.mit.edu	37	16	819431	819431	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:819431G>C	uc002cjz.1	-	16	3159	c.3159C>G	c.(3157-3159)CTC>CTG	p.L1053L	MIR662_hsa-mir-662|MI0003670_5'Flank	NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	702	Cytoplasmic (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						GCCTGGCCTAGAGCTGGCCCG	0.637000													11	40					0	0	0	0
PTX4	390667	broad.mit.edu	37	16	1537722	1537722	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:1537722C>T	uc010uvf.1	-	2	376	c.376G>A	c.(376-378)GAG>AAG	p.E126K		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	131						extracellular region	metal ion binding				0						TGGCTCCTCTCGCCCAGGGTG	0.701000													9	27					0	0	0	0
HS3ST6	64711	broad.mit.edu	37	16	1962146	1962146	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:1962146G>A	uc002cnf.2	-	2	381	c.381C>T	c.(379-381)TTC>TTT	p.F127F		NM_001009606	NP_001009606	C9JH64	C9JH64_HUMAN	heparan sulfate (glucosamine)	127											0						CTCGCGTCACGAAGTAGCTGG	0.677000													7	11					0	0	0	0
CASKIN1	57524	broad.mit.edu	37	16	2228626	2228626	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:2228626G>A	uc010bsg.1	-	20	4253	c.4221C>T	c.(4219-4221)AGC>AGT	p.S1407S		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	1407					signal transduction	cytoplasm				skin(2)	2						TGCTGCCAGTGCTCTTTTCCG	0.617000													9	37					0	0	0	0
AMDHD2	51005	broad.mit.edu	37	16	2580409	2580409	+	Silent	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:2580409G>T	uc010uwc.1	+	11	1531	c.1434G>T	c.(1432-1434)GTG>GTT	p.V478V	AMDHD2_uc010uwd.1_Silent_p.V242V|CEMP1_uc002cqr.2_Silent_p.L222L	NM_001145815	NP_001139287	Q9Y303	NAGA_HUMAN	amidohydrolase domain containing 2 isoform 2	Error:Variant_position_missing_in_Q9Y303_after_alignment					N-acetylglucosamine metabolic process		N-acetylglucosamine-6-phosphate deacetylase activity			skin(2)|large_intestine(1)|breast(1)	4						CACGGGCCGTGAGGCTCCCTG	0.632000													9	33					1.12685e-05	1.14511e-05	1	0
ZNF263	10127	broad.mit.edu	37	16	3340070	3340070	+	Missense_Mutation	SNP	G	A	A	rs142452283		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:3340070G>A	uc002cuq.2	+	6	1896	c.1564G>A	c.(1564-1566)GAG>AAG	p.E522K	ZNF263_uc010uww.1_Missense_Mutation_p.E170K|ZNF263_uc002cur.2_Missense_Mutation_p.E170K	NM_005741	NP_005732	O14978	ZN263_HUMAN	zinc finger protein 263	522	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(3)|ovary(1)	4						TAAGTGTCCCGAGTGTGGGAA	0.512000													10	23					0	0	0	0
NLRC3	197358	broad.mit.edu	37	16	3614248	3614248	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:3614248G>A	uc010btn.2	-	5	1101	c.690C>T	c.(688-690)TTC>TTT	p.F230F		NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	230	NACHT.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						CGGTGTTGGAGAAGTCCAGAG	0.622000													5	15					0	0	0	0
PPL	5493	broad.mit.edu	37	16	4944533	4944533	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:4944533C>T	uc002cyd.1	-	12	1419	c.1329G>A	c.(1327-1329)CTG>CTA	p.L443L		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	443	Spectrin 2.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						CCGGAGCAATCAGCTTGTTCC	0.637000													24	56					0	0	0	0
GRIN2A	2903	broad.mit.edu	37	16	9892210	9892210	+	Silent	SNP	A	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:9892210A>C	uc002czo.3	-	11	2828	c.2280T>G	c.(2278-2280)GGT>GGG	p.G760G	GRIN2A_uc010uym.1_Silent_p.G760G|GRIN2A_uc010uyn.1_Silent_p.G603G|GRIN2A_uc002czr.3_Silent_p.G760G	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	760	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CAATTCCATAACCGGTGGTGG	0.542000													10	29					0	0	0	0
ERCC4	2072	broad.mit.edu	37	16	14028072	14028072	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:14028072G>C	uc002dce.2	+	7	1135	c.1126G>C	c.(1126-1128)GAA>CAA	p.E376Q	ERCC4_uc010uyz.1_5'UTR	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	376					double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						ACTGGTCCTAGAAAGCAACCC	0.363000			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				18	38					0	0	0	0
TMC7	79905	broad.mit.edu	37	16	19027907	19027907	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:19027907C>G	uc002dfq.2	+	3	577	c.447C>G	c.(445-447)ATC>ATG	p.I149M	TMC7_uc010vao.1_Missense_Mutation_p.I149M|TMC7_uc002dfp.2_Missense_Mutation_p.I149M|TMC7_uc010vap.1_Missense_Mutation_p.I39M	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	149	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						GGGAGGACATCCGCAGCATAG	0.458000													16	28					0	0	0	0
ACSM5	54988	broad.mit.edu	37	16	20451748	20451748	+	Nonstop_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:20451748G>C	uc002dhe.2	+	14	1886	c.1739G>C	c.(1738-1740)TGA>TCA	p.*580S		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	580					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						TGGGGGAAATGAGGTGCACCC	0.507000													6	18					0	0	0	0
ACSM2B	348158	broad.mit.edu	37	16	20563504	20563504	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:20563504G>C	uc002dhj.3	-	7	1066	c.856C>G	c.(856-858)CAT>GAT	p.H286D	ACSM2B_uc002dhk.3_Missense_Mutation_p.H286D|ACSM2B_uc010bwf.1_Missense_Mutation_p.H286D	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	286					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						GGCAAGAGATGAACAAATGTG	0.433000													40	86					0	0	0	0
KIF22	3835	broad.mit.edu	37	16	29816249	29816249	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:29816249G>A	uc002dts.3	+	12	1816	c.1792G>A	c.(1792-1794)GAA>AAA	p.E598K	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|KIF22_uc010vdv.1_Missense_Mutation_p.E530K|KIF22_uc010vdw.1_Missense_Mutation_p.E530K|KIF22_uc010bzf.2_Missense_Mutation_p.E544K|KIF22_uc002dtt.1_3'UTR|KIF22_uc002frc.1_RNA|MAZ_uc002dtv.1_5'Flank|MAZ_uc010vdx.1_5'Flank|MAZ_uc002dtw.2_5'Flank|MAZ_uc002dtx.2_5'Flank|MAZ_uc002dty.2_5'Flank|MAZ_uc010bzg.2_5'Flank|MAZ_uc002dtz.1_5'Flank	NM_007317	NP_015556	Q14807	KIF22_HUMAN	kinesin family member 22	598					blood coagulation|DNA repair|microtubule-based movement|mitosis	cytosol|kinetochore|microtubule|nucleus	ATP binding|DNA binding|microtubule motor activity|protein binding				0						TCTGCTGAACGAAGGCTCAGC	0.612000													9	19					0	0	0	0
HIRIP3	8479	broad.mit.edu	37	16	30005976	30005976	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:30005976C>T	uc002dve.2	-	4	951	c.490G>A	c.(490-492)GAA>AAA	p.E164K	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|INO80E_uc002dvg.1_5'Flank|INO80E_uc002dvh.1_5'Flank|INO80E_uc002dvi.1_5'Flank|INO80E_uc002dvj.1_5'Flank|INO80E_uc002dvk.1_5'Flank|HIRIP3_uc002dvf.2_Intron	NM_003609	NP_003600	Q9BW71	HIRP3_HUMAN	HIRA interacting protein 3	164	Glu-rich.				chromatin assembly or disassembly	nucleus	protein binding			central_nervous_system(1)	1						TACCCCTTTTCCTCCTCCTCA	0.567000													77	114					0	0	0	0
VPS35	55737	broad.mit.edu	37	16	46696241	46696241	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:46696241G>C	uc002eef.3	-	15	2080	c.1981C>G	c.(1981-1983)CTA>GTA	p.L661V	VPS35_uc002eed.2_Missense_Mutation_p.L482V|VPS35_uc002eee.2_Missense_Mutation_p.L622V	NM_018206	NP_060676	Q96QK1	VPS35_HUMAN	vacuolar protein sorting 35	661					protein transport|retrograde transport, endosome to Golgi	cytosol|endosome|membrane	protein binding				0		all_cancers(37;7.65e-05)|all_epithelial(9;0.000154)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				GGTTTCTTTAGAAGTTTGGAT	0.488000													5	20					0	0	0	0
N4BP1	9683	broad.mit.edu	37	16	48596194	48596194	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:48596194G>A	uc002efp.2	-	2	597	c.360C>T	c.(358-360)ATC>ATT	p.I120I		NM_153029	NP_694574	O75113	N4BP1_HUMAN	Nedd4 binding protein 1	120					negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination	nucleolus|PML body					0		all_cancers(37;0.179)|all_lung(18;0.11)				CACTTCCTCTGATGCCAAGAA	0.443000													4	15					0	0	0	0
RBL2	5934	broad.mit.edu	37	16	53513068	53513068	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:53513068C>T	uc002ehi.3	+	18	2824	c.2706C>T	c.(2704-2706)GTC>GTT	p.V902V	RBL2_uc002ehj.2_Silent_p.V612V|RBL2_uc010vgw.1_Intron	NM_005611	NP_005602	Q08999	RBL2_HUMAN	retinoblastoma-like 2 (p130)	902	Domain B.|Pocket; binds E1A.				cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						TTTGCCAGGTCACAAAAGAAG	0.338000													15	38					0	0	0	0
CES7	221223	broad.mit.edu	37	16	55897354	55897354	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:55897354G>A	uc002eip.2	-	6	865	c.716C>T	c.(715-717)CCC>CTC	p.P239L	CES7_uc002eio.2_Missense_Mutation_p.P239L|CES7_uc002eiq.2_5'UTR|CES7_uc002eir.2_Missense_Mutation_p.P133L	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1	239						extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		TTTGGCCATGGGAGACAGTAT	0.502000													10	29					0	0	0	0
NLRC5	84166	broad.mit.edu	37	16	57081464	57081464	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:57081464G>A	uc002ekk.1	+	23	3571	c.3346G>A	c.(3346-3348)GAG>AAG	p.E1116K	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Missense_Mutation_p.E835K|NLRC5_uc002ekl.2_Missense_Mutation_p.E921K|NLRC5_uc002ekm.2_Missense_Mutation_p.E891K|NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekp.1_Missense_Mutation_p.E32K|NLRC5_uc002ekq.1_5'UTR|NLRC5_uc002ekr.1_Missense_Mutation_p.E32K	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1116					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				CAGCCTCAGTGAGTGTCCTCT	0.627000													6	15					0	0	0	0
ZNF319	57567	broad.mit.edu	37	16	58032106	58032106	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:58032106G>A	uc002emx.1	-	2	687	c.64C>T	c.(64-66)CAG>TAG	p.Q22*		NM_020807	NP_065858	Q9P2F9	ZN319_HUMAN	zinc finger protein 319	22	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCATGGTGCTGAGGCTGCGGT	0.647000													17	66					0	0	0	0
GOT2	2806	broad.mit.edu	37	16	58742194	58742194	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:58742194C>G	uc002eof.1	-	10	1288	c.1174G>C	c.(1174-1176)GAG>CAG	p.E392Q	GOT2_uc010vim.1_Missense_Mutation_p.E349Q	NM_002080	NP_002071	P00505	AATM_HUMAN	aspartate aminotransferase 2 precursor	392					aspartate catabolic process|fatty acid transport|gluconeogenesis|response to ethanol	mitochondrial matrix|plasma membrane	L-aspartate:2-oxoglutarate aminotransferase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	ATCAGCCGCTCCACCTGCAGA	0.557000													11	34					0	0	0	0
ELMO3	79767	broad.mit.edu	37	16	67237258	67237258	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:67237258G>A	uc002esa.2	+	18	2011	c.1968G>A	c.(1966-1968)CTG>CTA	p.L656L	ELMO3_uc002esb.2_Silent_p.L639L|ELMO3_uc002esc.2_Silent_p.L490L|uc010vjf.1_5'Flank|MIR328_hsa-mir-328|MI0000804_5'Flank	NM_024712	NP_078988	Q96BJ8	ELMO3_HUMAN	engulfment and cell motility 3	603	PH.				apoptosis|phagocytosis	cytoplasm|cytoskeleton	SH3 domain binding				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00067)|Epithelial(162;0.00442)|all cancers(182;0.0417)		GGGCACTCCTGACAGGCAAGG	0.692000													5	12					0	0	0	0
KCTD19	146212	broad.mit.edu	37	16	67338376	67338376	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:67338376C>G	uc002esu.2	-	3	450	c.399G>C	c.(397-399)TGG>TGC	p.W133C	KCTD19_uc002est.2_5'UTR|KCTD19_uc010vjj.1_5'UTR	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	133						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		TAATACACTTCCATGTACGCC	0.488000													25	62					0	0	0	0
CTCF	10664	broad.mit.edu	37	16	67670652	67670652	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:67670652G>A	uc002etl.2	+	11	2187	c.1897G>A	c.(1897-1899)GAA>AAA	p.E633K	CTCF_uc010cek.2_Missense_Mutation_p.E305K|CTCF_uc002etm.1_Missense_Mutation_p.E122K	NM_006565	NP_006556	P49711	CTCF_HUMAN	CCCTC-binding factor	633					chromatin modification|chromosome segregation|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|regulation of centromeric sister chromatid cohesion|regulation of molecular function, epigenetic	chromosome, centromeric region|condensed chromosome|nucleolus|nucleoplasm	chromatin insulator sequence binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0166)|Epithelial(162;0.0577)		CGTAGAAATTGAACCTGAGCC	0.567000													47	98					0	0	0	0
CTCF	10664	broad.mit.edu	37	16	67671611	67671611	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:67671611G>C	uc002etl.2	+	12	2310	c.2020G>C	c.(2020-2022)GAA>CAA	p.E674Q	CTCF_uc010cek.2_Missense_Mutation_p.E346Q|CTCF_uc002etm.1_Missense_Mutation_p.E161Q	NM_006565	NP_006556	P49711	CTCF_HUMAN	CCCTC-binding factor	674					chromatin modification|chromosome segregation|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|regulation of centromeric sister chromatid cohesion|regulation of molecular function, epigenetic	chromosome, centromeric region|condensed chromosome|nucleolus|nucleoplasm	chromatin insulator sequence binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0166)|Epithelial(162;0.0577)		CATTCAGGTTGAAGACCAGAA	0.468000													9	32					0	0	0	0
EDC4	23644	broad.mit.edu	37	16	67915424	67915424	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:67915424C>T	uc002eur.2	+	21	2980	c.2814C>T	c.(2812-2814)CTC>CTT	p.L938L	EDC4_uc010cer.2_Silent_p.L557L|EDC4_uc002eus.2_Silent_p.L668L|EDC4_uc002eut.1_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	938					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		GATCCCGGCTCACAGAGCACC	0.592000													14	47					0	0	0	0
CIRH1A	84916	broad.mit.edu	37	16	69170620	69170620	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:69170620C>T	uc002ews.3	+	3	277	c.181C>T	c.(181-183)CGG>TGG	p.R61W	CIRH1A_uc002ewr.2_Missense_Mutation_p.R61W|CIRH1A_uc002ewt.3_5'UTR|CIRH1A_uc010cfi.2_5'UTR	NM_032830	NP_116219	Q969X6	CIR1A_HUMAN	cirhin	61	WD 2.					nucleolus	protein binding				0				OV - Ovarian serous cystadenocarcinoma(108;0.125)		TCATGAGTCTCGGGCTACAGA	0.463000													34	105					0	0	0	0
MLYCD	23417	broad.mit.edu	37	16	83948560	83948560	+	Splice_Site	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:83948560G>C	uc002fgz.2	+	5	969	c.949_splice	c.e5-1	p.R317_splice		NM_012213	NP_036345	O95822	DCMC_HUMAN	malonyl-CoA decarboxylase precursor						acyl-CoA metabolic process|fatty acid biosynthetic process	mitochondrion|peroxisome	malonyl-CoA decarboxylase activity|methylmalonyl-CoA decarboxylase activity				0						ATGCTTTACAGAGAGAGTTTC	0.493000													17	44					0	0	0	0
TCF25	22980	broad.mit.edu	37	16	89977645	89977645	+	Nonstop_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr16:89977645G>C	uc002fpb.2	+	18	2112	c.2030G>C	c.(2029-2031)TGA>TCA	p.*677S	TCF25_uc002fpc.2_3'UTR|uc010ciy.1_5'Flank	NM_014972	NP_055787	Q9BQ70	TCF25_HUMAN	NULP1	677					heart development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(9;4.71e-08)|Lung NSC(15;0.000192)|all_lung(18;0.000319)|all_neural(9;0.0122)|all_hematologic(23;0.027)		BRCA - Breast invasive adenocarcinoma(80;0.0288)		GAGTGGGACTGAGCGTCCGCA	0.607000													15	48					0	0	0	0
RNMTL1	55178	broad.mit.edu	37	17	686377	686377	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:686377C>G	uc002frw.2	+	2	475	c.369C>G	c.(367-369)ATC>ATG	p.I123M	GLOD4_uc002fru.2_5'Flank|GLOD4_uc010vqc.1_5'Flank|GLOD4_uc002frv.2_5'Flank	NM_018146	NP_060616	Q9HC36	RMTL1_HUMAN	RNA methyltransferase like 1	123					RNA processing		protein binding|RNA binding|RNA methyltransferase activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0219)		AAGGGAAGATCCTGCTGGAAG	0.428000													9	33					0	0	0	0
SLC43A2	124935	broad.mit.edu	37	17	1478937	1478937	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:1478937G>C	uc002fsv.2	-	14	1760	c.1671C>G	c.(1669-1671)CTC>CTG	p.L557L	SLC43A2_uc002fsu.2_Silent_p.L561L	NM_152346	NP_689559	Q8N370	LAT4_HUMAN	solute carrier family 43, member 2	557					cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0883)		CGTTGATTTTGAGGAAGAGTT	0.622000													8	26					0	0	0	0
OR1A1	8383	broad.mit.edu	37	17	3119395	3119395	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:3119395C>T	uc010vrc.1	+	1	481	c.481C>T	c.(481-483)CTG>TTG	p.L161L		NM_014565	NP_055380	Q9P1Q5	OR1A1_HUMAN	olfactory receptor, family 1, subfamily A,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CCCCCACACTCTGCTCACAGC	0.502000													19	49					0	0	0	0
ACADVL	37	broad.mit.edu	37	17	7123805	7123805	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:7123805C>T	uc002gev.2	+	3	312	c.161C>T	c.(160-162)TCC>TTC	p.S54F	DLG4_uc010cly.2_5'Flank|DLG4_uc002get.3_5'Flank|DLG4_uc010vto.1_5'Flank|DLG4_uc002geu.2_5'Flank|ACADVL_uc010vtp.1_Missense_Mutation_p.S64F|ACADVL_uc010vtq.1_Missense_Mutation_p.S100F|ACADVL_uc002gew.2_Intron|ACADVL_uc002gex.2_5'UTR	NM_000018	NP_000009	P49748	ACADV_HUMAN	acyl-Coenzyme A dehydrogenase, very long chain	54	Catalytic.				energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial inner membrane|mitochondrial nucleoid	long-chain-acyl-CoA dehydrogenase activity			ovary(3)	3						AAGTCAGATTCCCACCCCTCT	0.597000													15	37					0	0	0	0
GABARAP	11337	broad.mit.edu	37	17	7144691	7144691	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:7144691G>A	uc002gfb.2	-	3	362	c.258C>T	c.(256-258)CCC>CCT	p.P86P	PHF23_uc002gfa.2_5'Flank|PHF23_uc010vtt.1_5'Flank|PHF23_uc010cma.2_5'Flank	NM_007278	NP_009209	O95166	GBRAP_HUMAN	GABA(A) receptor-associated protein	86	Interaction with GPHN (By similarity).				protein targeting|synaptic transmission	autophagic vacuole membrane|Golgi membrane|microtubule|plasma membrane	beta-tubulin binding|GABA receptor binding				0						TGGCACTGGTGGGTGGAATGA	0.483000													109	275					0	0	0	0
NEURL4	84461	broad.mit.edu	37	17	7222436	7222436	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:7222436G>A	uc002gga.1	-	22	3624	c.3617C>T	c.(3616-3618)TCT>TTT	p.S1206F	NEURL4_uc002gfy.1_RNA|GPS2_uc002gfz.1_5'UTR|NEURL4_uc002ggb.1_Missense_Mutation_p.S1204F	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	1206	NHR 6.						protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGCACAGGCAGAAGCAGGGAA	0.597000													11	40					0	0	0	0
POLR2A	5430	broad.mit.edu	37	17	7417451	7417451	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:7417451C>T	uc002ghf.3	+	29	6102	c.5868C>T	c.(5866-5868)CTC>CTT	p.L1956L		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	1956	52 X 7 AA approximate tandem repeats of Y-[ST]-P-[STQ]-[ST]-P-[SRTEVKGN].|52; approximate.				mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				CCTACAGTCTCACAAGCCCGG	0.527000													15	57					0	0	0	0
PFAS	5198	broad.mit.edu	37	17	8158400	8158400	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:8158400G>C	uc002gkr.2	+	4	475	c.334G>C	c.(334-336)GGG>CGG	p.G112R	PFAS_uc010vuv.1_5'UTR	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	112					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CCGCGCCACTGGGCTGGGGCC	0.602000													23	96					0	0	0	0
RANGRF	29098	broad.mit.edu	37	17	8192666	8192666	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:8192666G>C	uc002gkv.2	+	3	403	c.285G>C	c.(283-285)CTG>CTC	p.L95L	SLC25A35_uc002gku.1_3'UTR|SLC25A35_uc002gkt.2_Intron|RANGRF_uc002gkw.2_Silent_p.L95L|RANGRF_uc002gky.2_Silent_p.L95L|RANGRF_uc002gkx.2_Silent_p.L95L|SLC25A35_uc002gkz.1_RNA	NM_016492	NP_057576	Q9HD47	MOG1_HUMAN	RAN guanine nucleotide release factor	95				ALR -> PE (in Ref. 3; AAF36156).	protein transport	cytoplasm|nucleus	guanyl-nucleotide exchange factor activity				0						ACCTGGCCCTGAGGGGCCGCT	0.582000													14	30					0	0	0	0
PIK3R5	23533	broad.mit.edu	37	17	8784012	8784012	+	Missense_Mutation	SNP	C	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:8784012C>A	uc002glt.2	-	19	2654	c.2587G>T	c.(2587-2589)GAT>TAT	p.D863Y	PIK3R5_uc010vuz.1_Missense_Mutation_p.D863Y|PIK3R5_uc002glu.3_Missense_Mutation_p.D477Y	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	863					platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						GAGCAGAGATCAGGTGCGGCC	0.632000													7	18					0.00198382	0.00199518	1	0
MYH2	4620	broad.mit.edu	37	17	10439886	10439886	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:10439886C>G	uc010coi.2	-	17	2063	c.1935G>C	c.(1933-1935)AAG>AAC	p.K645N	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.K645N|MYH2_uc010coj.2_Missense_Mutation_p.K645N	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	645	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AAGAGCCCTTCTTCTTACCAC	0.393000													5	15					0	0	0	0
C17orf48	56985	broad.mit.edu	37	17	10608643	10608643	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:10608643C>G	uc002gmt.2	+	2	475	c.400C>G	c.(400-402)CAG>GAG	p.Q134E	C17orf48_uc002gmu.2_RNA|C17orf48_uc002gmv.2_RNA|C17orf48_uc010vvg.1_Missense_Mutation_p.Q134E	NM_020233	NP_064618	Q3LIE5	ADPRM_HUMAN	ADP-ribose/CDP-alcohol pyrophosphatase	134							ADP-ribose diphosphatase activity|CDP-glycerol diphosphatase activity|metal ion binding				0						TCTAGAAGATCAGATTGTACA	0.338000													23	33					0	0	0	0
DNAH9	1770	broad.mit.edu	37	17	11593142	11593142	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:11593142G>A	uc002gne.2	+	20	4071	c.4003G>A	c.(4003-4005)GAG>AAG	p.E1335K	DNAH9_uc010coo.2_Missense_Mutation_p.E629K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1335	Potential.|Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CATGGAGTTGGAGTGCAAACA	0.562000													3	9					0	0	0	0
ZNF287	57336	broad.mit.edu	37	17	16455379	16455379	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:16455379G>A	uc002gqi.2	-	6	2530	c.2077C>T	c.(2077-2079)CAA>TAA	p.Q693*		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	686	C2H2-type 12.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		CTCTGATGTTGATTAAGTGAT	0.363000													12	37					0	0	0	0
FAM83G	644815	broad.mit.edu	37	17	18907111	18907111	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:18907111G>A	uc002guw.2	-	2	411	c.244C>T	c.(244-246)CGG>TGG	p.R82W	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	82										ovary(1)|central_nervous_system(1)	2						CCCGTGCCCCGAGGGTCCTCA	0.697000													6	8					0	0	0	0
ATAD5	79915	broad.mit.edu	37	17	29162420	29162420	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:29162420G>A	uc002hfs.1	+	2	1667	c.1321G>A	c.(1321-1323)GAT>AAT	p.D441N	ATAD5_uc002hft.1_Missense_Mutation_p.D338N	NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	441					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				AGGAAGAGATGATAATTCTAA	0.323000													6	20					0	0	0	0
C17orf42	79736	broad.mit.edu	37	17	29226355	29226355	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:29226355G>A	uc002hfu.2	-	4	985	c.915C>T	c.(913-915)TTC>TTT	p.F305F	C17orf42_uc002hfv.2_RNA	NM_024683	NP_078959	Q96QE5	TEFM_HUMAN	hypothetical protein LOC79736	305					oxidative phosphorylation|regulation of transcription, DNA-dependent|transcription from mitochondrial promoter	mitochondrial nucleoid|ribonucleoprotein complex	DNA polymerase processivity factor activity|nucleic acid binding|protein binding			ovary(1)	1		all_cancers(10;4.64e-07)|all_hematologic(16;0.014)|Acute lymphoblastic leukemia(14;0.0236)|Myeloproliferative disorder(56;0.0255)				GTATAGAATCGAAGAGAAACT	0.428000													11	34					0	0	0	0
NF1	4763	broad.mit.edu	37	17	29559770	29559770	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:29559770G>A	uc002hgg.2	+	26	3700	c.3367G>A	c.(3367-3369)GAA>AAA	p.E1123K	NF1_uc002hgh.2_Missense_Mutation_p.E1123K|NF1_uc010csn.1_Missense_Mutation_p.E983K|NF1_uc002hgi.1_Missense_Mutation_p.E156K	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1123					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AGTTGAAGATGAAAGTGCGCA	0.433000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			21	37					0	0	0	0
TMEM98	26022	broad.mit.edu	37	17	31267910	31267910	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:31267910G>A	uc002hhq.2	+	8	1038	c.580G>A	c.(580-582)GAG>AAG	p.E194K	TMEM98_uc002hhr.2_Missense_Mutation_p.E194K	NM_015544	NP_056359	Q9Y2Y6	TMM98_HUMAN	transmembrane protein 98	194						endoplasmic reticulum|integral to membrane					0		Ovarian(249;0.182)|Breast(31;0.244)	BRCA - Breast invasive adenocarcinoma(9;0.0769)			GTCGGCTGCTGAGGAGCATTT	0.572000													16	43					0	0	0	0
LIG3	3980	broad.mit.edu	37	17	33318806	33318806	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:33318806G>A	uc002hik.1	+	6	1266	c.1158G>A	c.(1156-1158)AAG>AAA	p.K386K	LIG3_uc002hij.2_Silent_p.K386K|LIG3_uc010cth.1_Silent_p.K395K	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	386					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	GGCTGTCCAAGCTCACCAAGG	0.552000								Other_BER_factors					14	29					0	0	0	0
AP2B1	163	broad.mit.edu	37	17	34050652	34050652	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:34050652G>A	uc002hjr.2	+	21	2937	c.2748G>A	c.(2746-2748)CTG>CTA	p.L916L	AP2B1_uc002hjq.2_Silent_p.L930L|AP2B1_uc010wci.1_Silent_p.L892L|AP2B1_uc002hjs.2_Silent_p.L859L|AP2B1_uc002hjt.2_Silent_p.L930L|AP2B1_uc010ctv.2_Silent_p.L930L|AP2B1_uc010wcj.1_Silent_p.L667L	NM_001282	NP_001273	P63010	AP2B1_HUMAN	adaptor-related protein complex 2, beta 1	916	Interaction with ARRB1.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|coated pit|cytosol|endocytic vesicle membrane|plasma membrane	clathrin binding|protein transporter activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		AGCTGTCACTGAAGTGTAGAG	0.423000													17	31					0	0	0	0
Unknown	0	broad.mit.edu	37	17	37188037	37188037	+	RNA	SNP	A	G	G	rs34112047	by1000genomes	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:37188037A>G	uc002hrd.1	+	1		c.1879A>G								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		GCCAGGATCAAGCTCAGCATC	0.512000													6	22					0	0	0	0
CACNB1	782	broad.mit.edu	37	17	37343170	37343170	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:37343170C>T	uc002hrm.1	-	5	580	c.427G>A	c.(427-429)GAC>AAC	p.D143N	CACNB1_uc002hrl.1_5'UTR|CACNB1_uc002hrn.2_Missense_Mutation_p.D143N|CACNB1_uc002hro.2_Missense_Mutation_p.D143N|CACNB1_uc002hrp.1_Missense_Mutation_p.D143N|CACNB1_uc010web.1_Missense_Mutation_p.D96N	NM_000723	NP_000714	Q02641	CACB1_HUMAN	calcium channel, voltage-dependent, beta 1	143	SH3.				axon guidance	voltage-gated calcium channel complex				large_intestine(1)|ovary(1)	2					Ibutilide(DB00308)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Verapamil(DB00661)	ATCCACCAGTCATTATTGTAT	0.552000													21	38					0	0	0	0
THRA	7067	broad.mit.edu	37	17	38240145	38240145	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:38240145G>A	uc002htw.2	+	5	763	c.280G>A	c.(280-282)GAC>AAC	p.D94N	THRA_uc010cwp.1_Missense_Mutation_p.D94N|THRA_uc002htv.2_Missense_Mutation_p.D94N|THRA_uc002htx.2_Missense_Mutation_p.D94N	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	94	NR C4-type.|Nuclear receptor.				negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	CTGCAAATATGACAGCTGCTG	0.562000													26	53					0	0	0	0
UBTF	7343	broad.mit.edu	37	17	42287534	42287534	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:42287534C>T	uc002igb.2	-	14	1651	c.1584G>A	c.(1582-1584)CTG>CTA	p.L528L	UBTF_uc002igc.2_Silent_p.L491L|UBTF_uc010czs.2_Silent_p.L528L|UBTF_uc002igd.2_Silent_p.L491L|UBTF_uc010czt.2_Silent_p.L528L|UBTF_uc002ige.2_Silent_p.L491L	NM_014233	NP_055048	P17480	UBF1_HUMAN	upstream binding transcription factor, RNA	528	HMG box 5.				positive regulation of transcription from RNA polymerase I promoter|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm	DNA binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.114)		TAATCCACATCAGTTTCTCCT	0.493000											OREG0024456	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	101					0	0	0	0
GPATCH8	23131	broad.mit.edu	37	17	42477256	42477256	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:42477256C>G	uc002igw.1	-	8	2253	c.2189G>C	c.(2188-2190)GGA>GCA	p.G730A	GPATCH8_uc002igv.1_Missense_Mutation_p.G652A|GPATCH8_uc010wiz.1_Missense_Mutation_p.G652A	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	730						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		TGGTTTGGGTCCTCGTTCAGA	0.532000													17	41					0	0	0	0
PLEKHM1	9842	broad.mit.edu	37	17	43531395	43531395	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:43531395G>C	uc002ija.2	-	7	1993	c.1823C>G	c.(1822-1824)TCC>TGC	p.S608C	PLEKHM1_uc010wjm.1_Missense_Mutation_p.S580C|PLEKHM1_uc002ijb.2_Missense_Mutation_p.S83C|PLEKHM1_uc010wjn.1_Missense_Mutation_p.S557C|PLEKHM1_uc002ijc.2_Missense_Mutation_p.S62C	NM_014798	NP_055613	Q9Y4G2	PKHM1_HUMAN	pleckstrin homology domain containing, family M	608	PH 1.				intracellular signal transduction	cytoplasm	metal ion binding				0	Renal(3;0.0405)					GTCCTGGGAGGAGGCGCGCAG	0.642000													13	50					0	0	0	0
KIAA1267	284058	broad.mit.edu	37	17	44116447	44116447	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:44116447C>T	uc002ikb.2	-	8	2423	c.2338G>A	c.(2338-2340)GAC>AAC	p.D780N	KIAA1267_uc002ikc.2_Missense_Mutation_p.D780N|KIAA1267_uc002ikd.2_Missense_Mutation_p.D780N|KIAA1267_uc010dav.2_Missense_Mutation_p.D780N|KIAA1267_uc010wkb.1_Missense_Mutation_p.D111N|KIAA1267_uc010wkc.1_Intron	NM_015443	NP_056258	Q7Z3B3	K1267_HUMAN	hypothetical protein LOC284058	780						MLL1 complex	protein binding			skin(2)	2		Melanoma(429;0.211)				TGGTTTGGGTCATGCACGGGT	0.582000													32	72					0	0	0	0
ITGA3	3675	broad.mit.edu	37	17	48154040	48154040	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:48154040G>A	uc010dbl.2	+	14	2381	c.1917G>A	c.(1915-1917)CTG>CTA	p.L639L	ITGA3_uc010dbm.2_Silent_p.L639L	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	639	Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						AGCAGAAGCTGAGCAGGTGGC	0.657000													17	43					0	0	0	0
MBTD1	54799	broad.mit.edu	37	17	49272689	49272689	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:49272689C>T	uc002itr.3	-	13	1602	c.1258G>A	c.(1258-1260)GAT>AAT	p.D420N	MBTD1_uc002itp.3_Missense_Mutation_p.D256N|MBTD1_uc002itq.3_Intron	NM_017643	NP_060113	Q05BQ5	MBTD1_HUMAN	mbt domain containing 1	420	MBT 3.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(22;1.54e-08)			TCTGAGCCATCGATCCCAATC	0.388000													19	42					0	0	0	0
BZRAP1	9256	broad.mit.edu	37	17	56386091	56386091	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:56386091G>C	uc002ivx.3	-	22	5413	c.4542C>G	c.(4540-4542)ATC>ATG	p.I1514M	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Missense_Mutation_p.I1454M|BZRAP1_uc010wnt.1_Missense_Mutation_p.I1514M	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1514						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGGTGATGCTGATGCCCCCGC	0.632000													12	20					0	0	0	0
PRR11	55771	broad.mit.edu	37	17	57270939	57270939	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:57270939G>C	uc002ixf.1	+	5	568	c.489G>C	c.(487-489)CTG>CTC	p.L163L	PRR11_uc002ixg.1_RNA	NM_018304	NP_060774	Q96HE9	PRR11_HUMAN	proline rich 11	163										ovary(2)	2	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					CCTGCGTTCTGATCACCCCTG	0.408000													15	52					0	0	0	0
RPS6KB1	6198	broad.mit.edu	37	17	58013615	58013615	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:58013615C>G	uc002ixy.2	+	11	1121	c.1018C>G	c.(1018-1020)CCT>GCT	p.P340A	RPS6KB1_uc010ddj.1_Missense_Mutation_p.P340A|RPS6KB1_uc010wom.1_Missense_Mutation_p.P287A|RPS6KB1_uc010won.1_Missense_Mutation_p.P317A|RPS6KB1_uc010woo.1_Missense_Mutation_p.P275A	NM_003161	NP_003152	P23443	KS6B1_HUMAN	ribosomal protein S6 kinase, 70kDa, polypeptide	340	Protein kinase.				apoptosis|G1/S transition of mitotic cell cycle|insulin receptor signaling pathway|negative regulation of apoptosis|phosphatidylinositol-mediated signaling|positive regulation of mitotic cell cycle|positive regulation of translational initiation|TOR signaling cascade	cell junction|cytoplasm|cytosol|mitochondrial outer membrane|nucleus|nucleus|synapse|synaptosome	ATP binding|protein binding|protein kinase activity			large_intestine(1)	1	all_cancers(5;1.63e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.57e-12)|all cancers(12;6.41e-11)			GGGAGCTGGTCCTGGGGACGC	0.398000													16	50					0	0	0	0
C17orf64	124773	broad.mit.edu	37	17	58504131	58504131	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:58504131C>T	uc002iyq.2	+	4	471	c.382C>T	c.(382-384)CGC>TGC	p.R128C		NM_181707	NP_859058	Q86WR6	CQ064_HUMAN	hypothetical protein LOC124773	128										breast(1)	1	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;5.81e-13)|all cancers(12;2.17e-11)|Colorectal(3;0.01)			AAAGCAGCTTCGCCGACTTTA	0.602000													4	13					0	0	0	0
APPBP2	10513	broad.mit.edu	37	17	58577812	58577812	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:58577812C>T	uc002iys.1	-	2	463	c.175G>A	c.(175-177)GAA>AAA	p.E59K	APPBP2_uc010ddl.1_Intron	NM_006380	NP_006371	Q92624	APBP2_HUMAN	amyloid beta precursor protein-binding protein	59	TPR 1.				intracellular protein transport	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|nucleus	microtubule motor activity|protein binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.67e-13)|all cancers(12;1.44e-11)|Colorectal(3;0.01)			TCACAAAATTCACTGCCCAGT	0.234000													10	21					0	0	0	0
INTS2	57508	broad.mit.edu	37	17	59989349	59989349	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:59989349G>C	uc002izn.2	-	6	832	c.756C>G	c.(754-756)TTC>TTG	p.F252L	INTS2_uc002izm.2_Missense_Mutation_p.F244L	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	252					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						TTTTACACAAGAAGCGTAAGG	0.433000													23	73					0	0	0	0
TLK2	11011	broad.mit.edu	37	17	60683575	60683575	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:60683575C>G	uc010ddp.2	+	21	2278	c.2010C>G	c.(2008-2010)ATC>ATG	p.I670M	TLK2_uc002izx.3_Missense_Mutation_p.I496M|TLK2_uc002izz.3_Missense_Mutation_p.I648M|TLK2_uc002jaa.3_Missense_Mutation_p.I616M|TLK2_uc010wpd.1_Missense_Mutation_p.I616M	NM_006852	NP_006843	Q86UE8	TLK2_HUMAN	tousled-like kinase 2 isoform A	670	Protein kinase.				cell cycle|chromatin modification|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|kidney(1)	2						TGGGTGTGATCTTCTATCAGT	0.433000													10	27					0	0	0	0
MAP3K3	4215	broad.mit.edu	37	17	61762899	61762899	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:61762899C>T	uc002jbg.2	+	8	978	c.659C>T	c.(658-660)GCA>GTA	p.A220V	MAP3K3_uc002jbe.2_Missense_Mutation_p.A251V|MAP3K3_uc002jbf.2_Missense_Mutation_p.A251V|MAP3K3_uc002jbh.2_Missense_Mutation_p.A251V|MAP3K3_uc010wpo.1_Missense_Mutation_p.A135V|MAP3K3_uc010wpp.1_Missense_Mutation_p.A220V	NM_002401	NP_002392	Q99759	M3K3_HUMAN	mitogen-activated protein kinase kinase kinase 3	220					MAPKKK cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autophosphorylation	cytosol	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			lung(3)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)	6						CTGAGCAGTGCAGAAAATTCC	0.532000													16	41					0	0	0	0
FTSJ3	117246	broad.mit.edu	37	17	61902704	61902704	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:61902704G>A	uc002jbz.2	-	6	571	c.493C>T	c.(493-495)CAG>TAG	p.Q165*	FTSJ3_uc002jca.2_Nonsense_Mutation_p.Q165*|PSMC5_uc002jcb.2_5'Flank|PSMC5_uc010ddy.2_5'Flank|PSMC5_uc010ddz.2_5'Flank|PSMC5_uc002jcc.2_5'Flank|PSMC5_uc002jcd.2_5'Flank	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	165					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						AGCAGAGGCTGATAGTCACGA	0.527000													20	37					0	0	0	0
SCN4A	6329	broad.mit.edu	37	17	62025372	62025372	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:62025372C>G	uc002jds.1	-	17	3273	c.3196G>C	c.(3196-3198)GAA>CAA	p.E1066Q		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1066	III.|Helical; Name=S2 of repeat III; (Potential).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TCGGCATATTCTAGGATGGTG	0.572000													10	27					0	0	0	0
HELZ	9931	broad.mit.edu	37	17	65105258	65105258	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:65105258G>A	uc010wqk.1	-	29	4653	c.4466C>T	c.(4465-4467)TCG>TTG	p.S1489L	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.S1488L|HELZ_uc010der.2_Missense_Mutation_p.S32L	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					AGGTAATCCCGAGGGGTTCTC	0.448000													14	31					0	0	0	0
ABCA10	10349	broad.mit.edu	37	17	67181702	67181702	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:67181702C>T	uc010dfa.1	-	21	3292	c.2413G>A	c.(2413-2415)GAG>AAG	p.E805K	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_Missense_Mutation_p.E406K	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	805					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					GGTGAAAACTCCCAACAATGA	0.373000													19	40					0	0	0	0
NAT9	26151	broad.mit.edu	37	17	72768370	72768370	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:72768370C>G	uc002jlq.2	-	5	455	c.381G>C	c.(379-381)GCG>GCC	p.A127A	NAT9_uc002jlr.2_Silent_p.A126A	NM_015654	NP_056469	Q9BTE0	NAT9_HUMAN	N-acetyltransferase 9	127	N-acetyltransferase.					protein complex	N-acetyltransferase activity				0						AAGACAGCATCGCGAGAACGG	0.493000													9	33					0	0	0	0
ATP5H	10476	broad.mit.edu	37	17	73038632	73038632	+	Silent	SNP	G	C	C	rs139761287		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:73038632G>C	uc002jmn.1	-	2	178	c.114C>G	c.(112-114)CTC>CTG	p.L38L	KCTD2_uc010dfy.1_Intron|KCTD2_uc010dfz.2_Intron|ATP5H_uc002jmo.1_Silent_p.L38L	NM_006356	NP_006347	O75947	ATP5H_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	38					ATP catabolic process|respiratory electron transport chain	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity				0	all_lung(278;0.226)					ACCTGGAGGTGAGGGTCTCAT	0.428000													43	140					0	0	0	0
MGAT5B	146664	broad.mit.edu	37	17	74902123	74902123	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:74902123G>C	uc002jti.2	+	7	1015	c.912G>C	c.(910-912)CTG>CTC	p.L304L	MGAT5B_uc002jth.2_Silent_p.L293L	NM_198955	NP_945193	Q3V5L5	MGT5B_HUMAN	N-acetylglucosaminyltranferase VB isoform 2	293	Lumenal (Potential).					Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						TCGGCTTCCTGACGGAGGAGT	0.677000													19	62					0	0	0	0
TBC1D16	125058	broad.mit.edu	37	17	77915904	77915904	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:77915904G>T	uc002jxj.2	-	11	2126	c.2010C>A	c.(2008-2010)TTC>TTA	p.F670L	TBC1D16_uc002jxh.2_Missense_Mutation_p.F308L|TBC1D16_uc002jxi.2_Missense_Mutation_p.F295L	NM_019020	NP_061893	Q8TBP0	TBC16_HUMAN	TBC1 domain family, member 16	670						intracellular	Rab GTPase activator activity				0	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.00739)|BRCA - Breast invasive adenocarcinoma(99;0.0819)			CCAGGTTTCCGAAGTGCAGGA	0.647000													9	39					1.61879e-10	1.66624e-10	1	0
RNF213	57674	broad.mit.edu	37	17	78357725	78357725	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:78357725G>A	uc002jyh.1	+	34	8761	c.8538G>A	c.(8536-8538)CAG>CAA	p.Q2846Q	uc002jyi.1_Intron|RNF213_uc010dhx.1_5'Flank	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			ATTTCCTGCAGAAGGTATGTC	0.483000													17	70					0	0	0	0
FLJ35220	284131	broad.mit.edu	37	17	78403629	78403629	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:78403629C>T	uc002jym.1	+	9	864	c.836C>T	c.(835-837)TCA>TTA	p.S279L	FLJ35220_uc002jyk.2_Missense_Mutation_p.S234L|FLJ35220_uc002jyl.1_Missense_Mutation_p.S234L|FLJ35220_uc002jyn.2_Missense_Mutation_p.S85L	NM_173627	NP_775898	Q8N8Q3	ENDOV_HUMAN	hypothetical protein LOC284131 isoform 1	279					DNA repair		endodeoxyribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			GGAGAGTCCTCAGGTGAGGGC	0.657000								Direct_reversal_of_damage|Editing_and_processing_nucleases					14	38					0	0	0	0
CCDC137	339230	broad.mit.edu	37	17	79637270	79637270	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:79637270G>A	uc002kbc.3	+	3	320	c.284G>A	c.(283-285)AGA>AAA	p.R95K	CCDC137_uc002kbd.2_RNA	NM_199287	NP_954981	Q6PK04	CC137_HUMAN	coiled-coil domain containing 137	95										central_nervous_system(1)	1	all_neural(118;0.0878)|all_lung(278;0.23)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			GTGACCTTCAGAAAGACATTG	0.587000													6	19					0	0	0	0
CCDC137	339230	broad.mit.edu	37	17	79637313	79637313	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:79637313C>T	uc002kbc.3	+	3	363	c.327C>T	c.(325-327)ATC>ATT	p.I109I	CCDC137_uc002kbd.2_RNA	NM_199287	NP_954981	Q6PK04	CC137_HUMAN	coiled-coil domain containing 137	109										central_nervous_system(1)	1	all_neural(118;0.0878)|all_lung(278;0.23)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			AGCCCGACATCGCAGTCCCCA	0.577000													10	22					0	0	0	0
GPS1	2873	broad.mit.edu	37	17	80014847	80014847	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:80014847C>T	uc002kdl.1	+	12	1443	c.1398C>T	c.(1396-1398)GTC>GTT	p.V466V	GPS1_uc002kdk.1_Silent_p.V502V|GPS1_uc010dij.1_Silent_p.V501V|GPS1_uc002kdm.1_Silent_p.V446V|GPS1_uc002kdn.1_Silent_p.V462V|GPS1_uc002kdo.1_Silent_p.V465V|GPS1_uc010wvh.1_Silent_p.V458V	NM_004127	NP_004118	Q13098	CSN1_HUMAN	G protein pathway suppressor 1 isoform 2	466					cell cycle|cullin deneddylation|inactivation of MAPK activity|JNK cascade	cytoplasm|signalosome	GTPase inhibitor activity|protein binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0211)			AGATCCATGTCAAGGTGGGCT	0.652000													16	48					0	0	0	0
CCDC57	284001	broad.mit.edu	37	17	80129712	80129712	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:80129712C>T	uc002kdz.1	-	13	2102	c.1747G>A	c.(1747-1749)GAA>AAA	p.E583K	CCDC57_uc002kdx.1_Missense_Mutation_p.E583K|CCDC57_uc010dik.1_Missense_Mutation_p.E91K	NM_198082	NP_932348	Q2TAC2	CCD57_HUMAN	coiled-coil domain containing 57	583	Potential.									ovary(2)	2	Breast(20;0.00285)|all_neural(118;0.0878)|all_lung(278;0.0949)|Lung NSC(278;0.128)|Ovarian(332;0.227)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0253)			ATTTCTGCTTCAAGGGCCAGA	0.443000													16	58					0	0	0	0
ZNF750	79755	broad.mit.edu	37	17	80790149	80790149	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:80790149C>T	uc002kga.2	-	2	493	c.182G>A	c.(181-183)CGA>CAA	p.R61Q	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	61						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CTTGGGAACTCGATCCTGCTC	0.448000													11	41					0	0	0	0
COLEC12	81035	broad.mit.edu	37	18	357515	357515	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:357515C>T	uc002kkm.2	-	3	281	c.66G>A	c.(64-66)CAG>CAA	p.Q22Q		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	22	Cytoplasmic (Potential).			Q -> H (in Ref. 1; BAB39148).	carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				GTGTTCCTTCCTGAATACCTG	0.303000													11	28					0	0	0	0
TYMS	7298	broad.mit.edu	37	18	662243	662243	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:662243G>C	uc010dka.1	+	3	516	c.377G>C	c.(376-378)AGA>ACA	p.R126T	TYMS_uc010dkb.1_Missense_Mutation_p.R126T|TYMS_uc010dkc.1_Intron	NM_001071	NP_001062	P04818	TYSY_HUMAN	thymidylate synthase	126					DNA repair|DNA replication|phosphatidylinositol-mediated signaling|pyrimidine base metabolic process|pyrimidine nucleoside biosynthetic process|regulation of transcription involved in G1/S phase of mitotic cell cycle|response to organophosphorus	cytosol	thymidylate synthase activity				0					Capecitabine(DB01101)|Floxuridine(DB00322)|Fluorouracil(DB00544)|Gemcitabine(DB00441)|Leucovorin(DB00650)|Pemetrexed(DB00642)|Raltitrexed(DB00293)|Trifluridine(DB00432)	TTCTCCACCAGAGAAGAAGGG	0.493000													78	218					0	0	0	0
LAMA1	284217	broad.mit.edu	37	18	6943353	6943353	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:6943353C>T	uc002knm.2	-	62	8987	c.8893G>A	c.(8893-8895)GAG>AAG	p.E2965K	LAMA1_uc002knk.2_Missense_Mutation_p.E295K|LAMA1_uc002knl.2_Missense_Mutation_p.E418K|LAMA1_uc010wzj.1_Missense_Mutation_p.E2441K	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2965	Laminin G-like 5.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTTTTGGGCTCATATGCAGCT	0.438000													34	86					0	0	0	0
LAMA1	284217	broad.mit.edu	37	18	6975007	6975007	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:6975007C>T	uc002knm.2	-	46	6612	c.6518G>A	c.(6517-6519)CGA>CAA	p.R2173Q	LAMA1_uc010wzj.1_Missense_Mutation_p.R1649Q	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2173	Laminin G-like 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CACTCTCCCTCGCCGCATCTC	0.542000													7	12					0	0	0	0
LAMA1	284217	broad.mit.edu	37	18	6978282	6978282	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:6978282C>T	uc002knm.2	-	43	6197	c.6103G>A	c.(6103-6105)GAG>AAG	p.E2035K	LAMA1_uc010wzj.1_Missense_Mutation_p.E1511K	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2035	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTCAGCAGCTCCTGGCTCAGC	0.587000													22	48					0	0	0	0
LAMA1	284217	broad.mit.edu	37	18	6978307	6978307	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:6978307C>T	uc002knm.2	-	43	6172	c.6078G>A	c.(6076-6078)CTG>CTA	p.L2026L	LAMA1_uc010wzj.1_Silent_p.L1502L	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2026	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCACGTCCCTCAGCGTGCTCA	0.537000													19	41					0	0	0	0
LAMA1	284217	broad.mit.edu	37	18	6992681	6992681	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:6992681C>T	uc002knm.2	-	36	5141	c.5047G>A	c.(5047-5049)GAA>AAA	p.E1683K	LAMA1_uc010wzj.1_Missense_Mutation_p.E1159K	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1683	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGGAAATCTTCATCCAAAGTC	0.353000													13	40					0	0	0	0
RALBP1	10928	broad.mit.edu	37	18	9535686	9535686	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:9535686G>C	uc002kob.2	+	10	1942	c.1719G>C	c.(1717-1719)TTG>TTC	p.L573F	RALBP1_uc002koc.2_Missense_Mutation_p.L573F	NM_006788	NP_006779	Q15311	RBP1_HUMAN	ralA binding protein 1	573					chemotaxis|positive regulation of Cdc42 GTPase activity|small GTPase mediated signal transduction|transport	cytosol|membrane	ATPase activity, coupled to movement of substances|Rac GTPase activator activity|Rac GTPase binding|Ral GTPase binding			central_nervous_system(1)	1						ACAATCATTTGAATCAAGCAA	0.552000													6	17					0	0	0	0
IMPA2	3613	broad.mit.edu	37	18	12028068	12028068	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:12028068G>T	uc002kqp.1	+	6	731	c.517G>T	c.(517-519)GAA>TAA	p.E173*	IMPA2_uc002kqo.1_5'UTR|IMPA2_uc002kqq.1_Nonsense_Mutation_p.E53*	NM_014214	NP_055029	O14732	IMPA2_HUMAN	inositol(myo)-1(or 4)-monophosphatase 2	173					inositol phosphate dephosphorylation|signal transduction	cytoplasm	inositol-1(or 4)-monophosphatase activity|metal ion binding|protein homodimerization activity			skin(2)	2					Lithium(DB01356)	GGTTCTGACAGAAATTGGCCC	0.498000													17	61					4.63292e-17	4.83101e-17	1	0
CXADRP3	440224	broad.mit.edu	37	18	14478397	14478397	+	RNA	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:14478397C>T	uc010xai.1	-	3		c.1167G>A				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						CTTCTGGCAGCGGACGTACGG	0.458000													5	7					0	0	0	0
OSBPL1A	114876	broad.mit.edu	37	18	21805078	21805078	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:21805078C>G	uc002kve.2	-	17	1703	c.1529G>C	c.(1528-1530)AGA>ACA	p.R510T	OSBPL1A_uc002kvd.2_5'UTR|OSBPL1A_uc010xbc.1_Missense_Mutation_p.R128T|OSBPL1A_uc002kvf.3_Missense_Mutation_p.R290T	NM_080597	NP_542164	Q9BXW6	OSBL1_HUMAN	oxysterol-binding protein-like 1A isoform B	510					cholesterol metabolic process|lipid transport|vesicle-mediated transport		phospholipid binding			ovary(4)	4	all_cancers(21;0.000396)|all_epithelial(16;4.36e-06)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0505)|Ovarian(20;0.17)					TCTGTGTTTTCTACTGCCCAA	0.507000													28	55					0	0	0	0
DSG1	1828	broad.mit.edu	37	18	28909991	28909991	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:28909991C>G	uc002kwp.2	+	5	721	c.509C>G	c.(508-510)TCT>TGT	p.S170C		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	170	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GAAGAAAATTCTAATGCAAGT	0.398000													17	30					0	0	0	0
ACAA2	10449	broad.mit.edu	37	18	47322138	47322138	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:47322138G>C	uc002ldw.3	-	4	823	c.426C>G	c.(424-426)ATC>ATG	p.I142M	ACAA2_uc002ldx.3_Missense_Mutation_p.I139M	NM_006111	NP_006102	P42765	THIM_HUMAN	acetyl-coenzyme A acyltransferase 2	142					anti-apoptosis|cholesterol biosynthetic process		acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1						TTCCAACCTTGATATCTGATC	0.338000													7	20					0	0	0	0
ZNF532	55205	broad.mit.edu	37	18	56648829	56648829	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:56648829G>C	uc002lho.2	+	10	3938	c.3391G>C	c.(3391-3393)GAA>CAA	p.E1131Q	ZNF532_uc002lhp.2_Missense_Mutation_p.E1129Q|ZNF532_uc010xeg.1_Missense_Mutation_p.E1129Q|ZNF532_uc002lhr.2_Missense_Mutation_p.E1129Q|ZNF532_uc002lhs.2_Missense_Mutation_p.E1129Q|ZNF532_uc010xeh.1_Missense_Mutation_p.E219Q	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	1131					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						GGAGGAAACAGAAATAAAAGA	0.403000													9	17					0	0	0	0
CCBE1	147372	broad.mit.edu	37	18	57363930	57363930	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:57363930G>A	uc002lib.2	-	2	213	c.143C>T	c.(142-144)TCA>TTA	p.S48L		NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	48					lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				TTTGCTCTCTGAGCAGATTTC	0.582000											OREG0025022	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	40					0	0	0	0
TSHZ1	10194	broad.mit.edu	37	18	72999979	72999979	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr18:72999979G>C	uc002lly.2	+	2	3045	c.2482G>C	c.(2482-2484)GAG>CAG	p.E828Q		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	873						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		CAGCAGCTTTGAGGAGGCGTT	0.607000													8	22					0	0	0	0
APBA3	9546	broad.mit.edu	37	19	3759866	3759866	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:3759866C>G	uc002lyp.1	-	2	574	c.397G>C	c.(397-399)GAG>CAG	p.E133Q	MRPL54_uc002lyq.3_5'Flank	NM_004886	NP_004877	O96018	APBA3_HUMAN	amyloid beta (A4) precursor protein-binding,	133					intracellular signal transduction|protein transport	intracellular|membrane	protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00467)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGGCAGGCTCTAGAGGCTCT	0.657000													20	41					0	0	0	0
MPND	84954	broad.mit.edu	37	19	4345870	4345870	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:4345870G>A	uc002mae.2	+	3	490	c.423G>A	c.(421-423)TCG>TCA	p.S141S	MPND_uc010dtx.2_RNA|MPND_uc002mag.2_Silent_p.S141S|MPND_uc002maf.2_Silent_p.S141S|MPND_uc002mah.2_Silent_p.S29S|MPND_uc002mai.2_Silent_p.S29S	NM_032868	NP_116257	Q8N594	MPND_HUMAN	MPN domain containing isoform 1	141							peptidase activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAAGAAGTCGGGCTGTGGCT	0.622000													17	59					0	0	0	0
LRG1	116844	broad.mit.edu	37	19	4538895	4538895	+	Missense_Mutation	SNP	C	G	G	rs142669067		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:4538895C>G	uc002mau.2	-	2	112	c.101G>C	c.(100-102)TGG>TCG	p.W34S	PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	34						extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTGACCCCCCAGGCTGAGGC	0.582000													20	69					0	0	0	0
SAFB2	9667	broad.mit.edu	37	19	5595458	5595458	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:5595458G>A	uc002mcd.2	-	14	2045	c.1833C>T	c.(1831-1833)ATC>ATT	p.I611I		NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	611	Interacts with SAFB1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		CAAACGACAAGATGTCTCTCT	0.478000													6	10					0	0	0	0
TMEM146	257062	broad.mit.edu	37	19	5776273	5776273	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:5776273C>T	uc002mda.2	+	21	2104	c.2043C>T	c.(2041-2043)TTC>TTT	p.F681F		NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	681	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGATCATTTTCGGCCACAATG	0.557000													12	14					0	0	0	0
TUBB4	10382	broad.mit.edu	37	19	6501390	6501390	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:6501390C>G	uc002mfg.1	-	3	292	c.185G>C	c.(184-186)AGA>ACA	p.R62T	TUBB4_uc002mff.1_5'UTR	NM_006087	NP_006078	P04350	TBB4_HUMAN	tubulin, beta 4	62					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(2)	2		Hepatocellular(1079;0.00213)|Renal(1328;0.0183)		Lung(535;3.23e-05)|STAD - Stomach adenocarcinoma(1328;8.24e-05)|GBM - Glioblastoma multiforme(1328;0.00839)|READ - Rectum adenocarcinoma(264;0.155)		CAGCACCGCTCTGGGGACATA	0.607000													5	17					0	0	0	0
SH2D3A	10045	broad.mit.edu	37	19	6754983	6754983	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:6754983G>T	uc002mft.2	-	5	1034	c.840C>A	c.(838-840)TTC>TTA	p.F280L	SH2D3A_uc010xjg.1_Missense_Mutation_p.F158L	NM_005490	NP_005481	Q9BRG2	SH23A_HUMAN	SH2 domain containing 3A	280					JNK cascade|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			breast(2)	2						CATGGGGGCAGAAAGAGATCT	0.612000													57	157					9.53615e-21	1.00033e-20	1	0
ARHGEF18	23370	broad.mit.edu	37	19	7529459	7529459	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:7529459G>A	uc002mgi.2	+	13	2476	c.2223G>A	c.(2221-2223)AAG>AAA	p.K741K	ARHGEF18_uc010xjm.1_Silent_p.K583K|ARHGEF18_uc002mgh.2_Silent_p.K583K|ARHGEF18_uc002mgj.1_Silent_p.K384K	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	741					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				GCAGTTTCAAGAAGAAAGTCA	0.632000													10	51					0	0	0	0
PNPLA6	10908	broad.mit.edu	37	19	7605588	7605588	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:7605588G>A	uc010xjq.1	+	8	1009	c.814G>A	c.(814-816)GTC>ATC	p.V272I	PNPLA6_uc002mgq.1_Missense_Mutation_p.V224I|PNPLA6_uc010xjp.1_Missense_Mutation_p.V224I|PNPLA6_uc002mgr.1_Missense_Mutation_p.V224I|PNPLA6_uc002mgs.2_Missense_Mutation_p.V263I	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	263	cNMP 1.|Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						CATCCTGGATGTCATCACCGT	0.582000													21	111					0	0	0	0
LRRC8E	80131	broad.mit.edu	37	19	7964455	7964455	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:7964455G>A	uc002mir.2	+	3	1149	c.1048G>A	c.(1048-1050)GAG>AAG	p.E350K		NM_025061	NP_079337	Q6NSJ5	LRC8E_HUMAN	leucine rich repeat containing 8 family, member	350						integral to membrane				lung(1)|pancreas(1)	2						CGTGCGGGAGGAGACTGGCAT	0.562000													23	77					0	0	0	0
LRRC8E	80131	broad.mit.edu	37	19	7965769	7965769	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:7965769G>A	uc002mir.2	+	3	2463	c.2362G>A	c.(2362-2364)GAA>AAA	p.E788K	MAP2K7_uc002mis.1_5'Flank|MAP2K7_uc002miv.2_5'Flank|MAP2K7_uc010xka.1_5'Flank|MAP2K7_uc002mit.2_5'Flank|MAP2K7_uc010xkb.1_5'Flank|MAP2K7_uc010dvv.2_5'Flank	NM_025061	NP_079337	Q6NSJ5	LRC8E_HUMAN	leucine rich repeat containing 8 family, member	788						integral to membrane				lung(1)|pancreas(1)	2						TCTGCCGGCAGAAGTGCGGGA	0.567000													15	53					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9072852	9072852	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:9072852G>T	uc002mkp.2	-	3	14798	c.14594C>A	c.(14593-14595)TCC>TAC	p.S4865Y		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4867	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCCATGGTGGAGGTGGTAAC	0.453000													20	89					3.51602e-12	3.62757e-12	1	0
ZNF177	7730	broad.mit.edu	37	19	9492159	9492159	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:9492159G>C	uc002mli.2	+	12	1335	c.672G>C	c.(670-672)AAG>AAC	p.K224N	ZNF177_uc002mlj.2_Missense_Mutation_p.K174N|ZNF177_uc002mlk.2_Missense_Mutation_p.K224N	NM_003451	NP_003442	Q13360	ZN177_HUMAN	zinc finger protein 177	224	C2H2-type 4.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CATCCCTTAAGAAACACACAC	0.463000													397	91					0	0	0	0
Unknown	0	broad.mit.edu	37	19	9801299	9801299	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:9801299G>A	uc010xkx.1	-	3	1191	c.568C>T	c.(568-570)CAA>TAA	p.Q190*						RecName: Full=Zinc finger protein 562;																		CTTACATGTTGAGTAAGGTGA	0.403000													20	105					0	0	0	0
ANGPTL6	83854	broad.mit.edu	37	19	10206706	10206706	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:10206706G>A	uc002mmx.1	-	2	652	c.534C>T	c.(532-534)ATC>ATT	p.I178I	ANGPTL6_uc002mmy.1_Silent_p.I178I	NM_031917	NP_114123	Q8NI99	ANGL6_HUMAN	angiopoietin-like 6 precursor	178					angiogenesis|cell differentiation|signal transduction	extracellular space	receptor binding				0			OV - Ovarian serous cystadenocarcinoma(20;3.58e-08)|Epithelial(33;2.5e-05)|all cancers(31;5.96e-05)			CCAGGCGGGCGATGAGACTGC	0.697000													7	20					0	0	0	0
ACP5	54	broad.mit.edu	37	19	11687266	11687266	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:11687266C>T	uc002msg.3	-	4	673	c.527G>A	c.(526-528)CGA>CAA	p.R176Q	ACP5_uc002msh.3_Missense_Mutation_p.R176Q|ACP5_uc002msi.3_Missense_Mutation_p.R176Q|ACP5_uc002msj.3_Missense_Mutation_p.R176Q	NM_001611	NP_001602	P13686	PPA5_HUMAN	acid phosphatase 5, tartrate resistant	176					water-soluble vitamin metabolic process	cytosol|integral to membrane|lysosome	acid phosphatase activity|ferric iron binding|ferrous iron binding			central_nervous_system(1)	1						CTTCACGTCTCGGGGCCTCTC	0.597000													8	43					0	0	0	0
CD97	976	broad.mit.edu	37	19	14507944	14507944	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:14507944C>T	uc002myl.2	+	6	657	c.534C>T	c.(532-534)CTC>CTT	p.L178L	CD97_uc002mym.2_Intron|CD97_uc002myn.2_Intron	NM_078481	NP_510966	P48960	CD97_HUMAN	CD97 antigen isoform 1 precursor	178	Extracellular (Potential).|EGF-like 4; calcium-binding (Potential).				cell adhesion|cell-cell signaling|cellular component movement|immune response|inflammatory response|neuropeptide signaling pathway	extracellular space|integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(3)|breast(1)	4						CCCACTGCCTCAACAACGTGG	0.607000													57	76					0	0	0	0
ZNF333	84449	broad.mit.edu	37	19	14829049	14829049	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:14829049C>T	uc002mzn.2	+	12	1044	c.910C>T	c.(910-912)CAG>TAG	p.Q304*	ZNF333_uc002mzk.3_Nonsense_Mutation_p.Q195*	NM_032433	NP_115809	Q96JL9	ZN333_HUMAN	zinc finger protein 333	304					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGAGCAACCTCAGCCTGGAGA	0.383000													8	31					0	0	0	0
ILVBL	10994	broad.mit.edu	37	19	15226872	15226872	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:15226872C>T	uc002nam.2	-	13	1603	c.1482G>A	c.(1480-1482)GGG>GGA	p.G494G	ILVBL_uc010xof.1_Silent_p.G135G|ILVBL_uc010dzw.2_Silent_p.G387G	NM_006844	NP_006835	A1L0T0	ILVBL_HUMAN	ilvB (bacterial acetolactate synthase)-like	494	Thiamine pyrophosphate binding (By similarity).					integral to membrane	magnesium ion binding|thiamine pyrophosphate binding|transferase activity			ovary(2)	2						CTCCCAGAGTCCCAAAGGCCC	0.617000													6	28					0	0	0	0
BRD4	23476	broad.mit.edu	37	19	15350585	15350585	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:15350585C>T	uc002nar.2	-	16	3552	c.3330G>A	c.(3328-3330)GTG>GTA	p.V1110V		NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	1110					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			TCTCCTCCTTCACCACCACGA	0.711000			T	NUT|C15orf55	lethal midline carcinoma of young people								10	40					0	0	0	0
CYP4F2	8529	broad.mit.edu	37	19	16006318	16006318	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:16006318G>A	uc002nbs.1	-	3	391	c.341C>T	c.(340-342)TCA>TTA	p.S114L	CYP4F2_uc010xot.1_5'UTR|CYP4F2_uc010xou.1_Intron	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	114					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						GATGGTACCTGAGGCGTTGAT	0.607000													43	181					0	0	0	0
NDUFA13	51079	broad.mit.edu	37	19	19627130	19627130	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:19627130G>T	uc010xqy.1	+	1	591	c.332G>T	c.(331-333)CGA>CTA	p.R111L	TSSK6_uc002nmq.2_5'Flank|TSSK6_uc002nmr.2_5'Flank|NDUFA13_uc002nms.2_Missense_Mutation_p.R111L|NDUFA13_uc010xqx.1_Missense_Mutation_p.R111L	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	28					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	TTGCCGCGTCGAGGACTGTCG	0.652000													11	42					0.00829132	0.00830077	1	0
ZNF714	148206	broad.mit.edu	37	19	21300497	21300497	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:21300497G>A	uc002npo.3	+	6	1390	c.1030G>A	c.(1030-1032)GAA>AAA	p.E344K	ZNF714_uc002npl.2_Missense_Mutation_p.E189K|ZNF714_uc010ecp.1_Missense_Mutation_p.E295K|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	344	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTACAAATGTGAAGAATGTGG	0.373000													6	11					0	0	0	0
ZNF208	7757	broad.mit.edu	37	19	22153504	22153504	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:22153504C>T	uc002nqp.2	-	7	3634	c.3485G>A	c.(3484-3486)GGA>GAA	p.G1162E	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GAGTTTCTCTCCAGCATGAAT	0.373000													3	6					0	0	0	0
CCNE1	898	broad.mit.edu	37	19	30308113	30308113	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:30308113G>A	uc002nsn.2	+	5	433	c.250G>A	c.(250-252)GAC>AAC	p.D84N	CCNE1_uc002nso.2_Missense_Mutation_p.D69N	NM_001238	NP_001229	P24864	CCNE1_HUMAN	cyclin E1 isoform 1	84					androgen receptor signaling pathway|cell division|positive regulation of transcription, DNA-dependent|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol|nucleoplasm	androgen receptor binding|protein kinase binding|transcription coactivator activity			lung(2)	2	all_cancers(1;2.19e-31)|all_epithelial(1;1.49e-30)|all_lung(1;1.37e-11)|Lung NSC(1;2.35e-11)|Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|Epithelial(1;6.85e-98)|all cancers(1;1.38e-94)|OV - Ovarian serous cystadenocarcinoma(1;1.38e-90)|STAD - Stomach adenocarcinoma(5;5.8e-07)|GBM - Glioblastoma multiforme(4;0.0394)|Lung(7;0.092)|LUAD - Lung adenocarcinoma(5;0.115)|BRCA - Breast invasive adenocarcinoma(6;0.183)|COAD - Colon adenocarcinoma(1;0.188)|Colorectal(1;0.202)			AGAAGATGATGACCGGGTTTA	0.532000													18	55					0	0	0	0
CATSPERG	57828	broad.mit.edu	37	19	38861431	38861431	+	Nonstop_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:38861431G>C	uc002oih.3	+	29	3566	c.3479G>C	c.(3478-3480)TGA>TCA	p.*1160S	CATSPERG_uc002oig.3_Nonstop_Mutation_p.*1120S|CATSPERG_uc002oif.3_Nonstop_Mutation_p.*800S|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	1160					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						TTGATGACCTGAGTGTCCCAC	0.572000													21	72					0	0	0	0
MAP3K10	4294	broad.mit.edu	37	19	40719513	40719513	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:40719513G>A	uc002ona.2	+	9	2215	c.1927G>A	c.(1927-1929)GAG>AAG	p.E643K	MAP3K10_uc002onb.2_Missense_Mutation_p.E32K	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	643					activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						ACTGCCTGCCGAGCCCTcccc	0.537000													14	17					0	0	0	0
ADCK4	79934	broad.mit.edu	37	19	41220510	41220510	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:41220510G>A	uc002oor.2	-	2	330	c.28C>T	c.(28-30)CGG>TGG	p.R10W	ADCK4_uc002ooq.1_Missense_Mutation_p.R10W|ADCK4_uc002oos.2_Missense_Mutation_p.R10W|ITPKC_uc002oot.2_5'Flank	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	10						integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			CCGGTCCCCCGAAGTAGGCCC	0.652000													7	28					0	0	0	0
EGLN2	112398	broad.mit.edu	37	19	41307102	41307102	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:41307102G>A	uc010ehd.2	+	8	1626	c.625G>A	c.(625-627)GAG>AAG	p.E209K	EGLN2_uc002opg.3_Missense_Mutation_p.E209K|EGLN2_uc002oph.2_Missense_Mutation_p.E209K|EGLN2_uc002opi.2_Missense_Mutation_p.E209K	NM_080732	NP_542770	Q96KS0	EGLN2_HUMAN	EGL nine (C.elegans) homolog 2	209					cell redox homeostasis|estrogen receptor signaling pathway|positive regulation of protein catabolic process|regulation of cell growth|response to hypoxia	cytoplasm|nucleus	ferrous iron binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|oxygen sensor activity			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Vitamin C(DB00126)	CGTGCTGGCCGAGGTGGAGGC	0.687000													37	97					0	0	0	0
CCDC97	90324	broad.mit.edu	37	19	41828570	41828570	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:41828570G>A	uc002oqg.2	+	5	1104	c.982G>A	c.(982-984)GAT>AAT	p.D328N	CYP2F1_uc010xvw.1_Intron	NM_052848	NP_443080	Q96F63	CCD97_HUMAN	coiled-coil domain containing 97	328											0						GAGGTACTTTGATGAGGAAGA	0.617000													31	76					0	0	0	0
CCDC97	90324	broad.mit.edu	37	19	41828573	41828573	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:41828573G>A	uc002oqg.2	+	5	1107	c.985G>A	c.(985-987)GAG>AAG	p.E329K	CYP2F1_uc010xvw.1_Intron	NM_052848	NP_443080	Q96F63	CCD97_HUMAN	coiled-coil domain containing 97	329											0						GTACTTTGATGAGGAAGAACC	0.617000													32	74					0	0	0	0
ATP5SL	55101	broad.mit.edu	37	19	41944281	41944281	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:41944281G>C	uc002oqw.1	-	2	63	c.57C>G	c.(55-57)ATC>ATG	p.I19M	CYP2F1_uc010xvw.1_Intron|ATP5SL_uc002oqu.1_RNA|ATP5SL_uc002oqv.2_Missense_Mutation_p.I25M|ATP5SL_uc010xwa.1_Missense_Mutation_p.I25M|ATP5SL_uc002oqx.1_Missense_Mutation_p.I19M|ATP5SL_uc002oqy.1_Missense_Mutation_p.I19M|ATP5SL_uc002oqz.1_Missense_Mutation_p.I19M|ATP5SL_uc002ora.1_Missense_Mutation_p.I6M|ATP5SL_uc010xwb.1_Missense_Mutation_p.I25M	NM_018035	NP_060505	Q9NW81	AT5SL_HUMAN	ATP5S-like	19										large_intestine(1)|breast(1)	2						GGATGCCCCTGATACGCCCAT	0.597000													8	14					0	0	0	0
POU2F2	5452	broad.mit.edu	37	19	42600013	42600013	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:42600013G>A	uc002osp.2	-	9	799	c.732C>T	c.(730-732)TTC>TTT	p.F244F	POU2F2_uc002osn.2_Silent_p.F228F|POU2F2_uc002oso.2_Silent_p.F17F|POU2F2_uc002osq.2_Silent_p.F228F|POU2F2_uc002osr.1_Silent_p.F244F	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	244	POU-specific.				humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				TGAGGGCCTCGAAGCGGGAAA	0.622000													42	75					0	0	0	0
CIC	23152	broad.mit.edu	37	19	42795873	42795873	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:42795873G>A	uc002otf.1	+	11	2902	c.2862G>A	c.(2860-2862)CAG>CAA	p.Q954Q		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	954	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				TACCTGTGCAGAATGGTGCCC	0.607000			T	DUX4	soft tissue sarcoma								24	73					0	0	0	0
CEACAM1	634	broad.mit.edu	37	19	43031509	43031509	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:43031509G>C	uc002otv.2	-	2	221	c.108C>G	c.(106-108)CTC>CTG	p.L36L	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc002otw.2_Silent_p.L36L|CEACAM1_uc010eij.2_Silent_p.L36L|CEACAM1_uc002otx.2_Silent_p.L36L|CEACAM1_uc002oty.2_Silent_p.L36L|CEACAM1_uc002otz.2_Silent_p.L36L|CEACAM1_uc010eik.2_Silent_p.L36L|CEACAM1_uc002oua.2_Silent_p.L36L|CEACAM1_uc002oub.2_Silent_p.L36L|CEACAM1_uc002ouc.2_Silent_p.L36L	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	36	Ig-like V-type.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	ATTCAGTAGTGAGCTGGGCAG	0.498000													43	101					0	0	0	0
PHLDB3	653583	broad.mit.edu	37	19	44008099	44008099	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:44008099C>A	uc002own.3	-	2	431	c.172G>T	c.(172-174)GAA>TAA	p.E58*	PHLDB3_uc002owo.2_Nonsense_Mutation_p.E58*	NM_198850	NP_942147	Q6NSJ2	PHLB3_HUMAN	pleckstrin homology-like domain, family B,	58											0		Prostate(69;0.0153)				TCTCCCACTTCTTCTTCCTCT	0.697000													20	65					1.85244e-09	1.90005e-09	1	0
ZNF221	7638	broad.mit.edu	37	19	44471229	44471229	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:44471229G>C	uc002oxx.2	+	6	1903	c.1575G>C	c.(1573-1575)CAG>CAC	p.Q525H	ZNF221_uc010ejb.1_Missense_Mutation_p.Q525H|ZNF221_uc010xws.1_Missense_Mutation_p.Q525H	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	525	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				ATTCCCATCAGACATGCCATA	0.433000													20	42					0	0	0	0
ZNF230	7773	broad.mit.edu	37	19	44513041	44513041	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:44513041G>C	uc002oyb.1	+	3	366	c.115G>C	c.(115-117)GAG>CAG	p.E39Q		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	39	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				CGTGATGCTTGAGAACTTCAC	0.527000													44	69					0	0	0	0
ZNF233	353355	broad.mit.edu	37	19	44778014	44778014	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:44778014G>C	uc002oyz.1	+	5	1328	c.1201G>C	c.(1201-1203)GAT>CAT	p.D401H	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_Missense_Mutation_p.D216H	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	401	C2H2-type 5; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				CTGTAAATGTGATGTATATGA	0.438000													13	39					0	0	0	0
ZNF285	26974	broad.mit.edu	37	19	44891631	44891631	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:44891631G>C	uc002ozd.3	-	4	863	c.776C>G	c.(775-777)TCT>TGT	p.S259C	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.S266C	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	259					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						ACATTTATAAGATTTTTCTCC	0.418000													36	75					0	0	0	0
RELB	5971	broad.mit.edu	37	19	45515293	45515293	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:45515293C>T	uc002paj.1	+	5	389	c.263C>T	c.(262-264)GCG>GTG	p.A88V		NM_006509	NP_006500	Q01201	RELB_HUMAN	reticuloendotheliosis viral oncogene homolog B	88						nucleus	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00986)		CGCGGGGCTGCGTCCCTGAGC	0.746000													4	15					0	0	0	0
ZC3H4	23211	broad.mit.edu	37	19	47572471	47572471	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:47572471G>T	uc002pga.3	-	14	2314	c.2276C>A	c.(2275-2277)CCT>CAT	p.P759H	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	759							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		CAGGAAGTCAGGGACACCGGC	0.682000													10	29					4.68919e-08	4.79291e-08	1	0
ZC3H4	23211	broad.mit.edu	37	19	47572518	47572518	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:47572518G>C	uc002pga.3	-	14	2267	c.2229C>G	c.(2227-2229)TTC>TTG	p.F743L	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	743							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		CTCCCTCAGAGAAGCTGTCGG	0.672000													5	11					0	0	0	0
BAX	581	broad.mit.edu	37	19	49459487	49459487	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:49459487G>A	uc002plk.2	+	4	335	c.266G>A	c.(265-267)CGA>CAA	p.R89Q	BAX_uc002plf.1_Missense_Mutation_p.R89Q|BAX_uc002plg.1_Missense_Mutation_p.R52Q|BAX_uc002plh.1_Missense_Mutation_p.R11Q|BAX_uc010xzx.1_RNA|BAX_uc002plj.2_Missense_Mutation_p.R89Q|BAX_uc002pll.2_Missense_Mutation_p.R40Q|BAX_uc002plm.2_Missense_Mutation_p.R11Q	NM_138761	NP_620116	Q07812	BAX_HUMAN	BCL2-associated X protein isoform alpha	89					activation of caspase activity by cytochrome c|activation of pro-apoptotic gene products|B cell apoptosis|cleavage of lamin|DNA fragmentation involved in apoptotic nuclear change|establishment or maintenance of transmembrane electrochemical gradient|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|induction of retinal programmed cell death|mitochondrial fragmentation involved in apoptosis|mitochondrial fusion|negative regulation of protein binding|negative regulation of survival gene product expression|nuclear fragmentation involved in apoptotic nuclear change|positive regulation of neuron apoptosis|protein homooligomerization|regulation of mitochondrial membrane potential|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|release of cytochrome c from mitochondria|release of matrix enzymes from mitochondria|response to toxin|transformed cell apoptosis	cytosol|endoplasmic reticulum membrane|mitochondrial outer membrane|mitochondrial permeability transition pore complex|nucleus	BH3 domain binding|channel activity|lipid binding|protein heterodimerization activity|protein homodimerization activity			lung(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000159)|all cancers(93;0.00047)|GBM - Glioblastoma multiforme(486;0.018)|Epithelial(262;0.0279)		GACTCCCCCCGAGAGGTCTTT	0.577000													37	78					0	0	0	0
TEAD2	8463	broad.mit.edu	37	19	49850456	49850456	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:49850456G>C	uc002pnj.2	-	9	991	c.900C>G	c.(898-900)GTC>GTG	p.V300V	TEAD2_uc002png.2_Silent_p.V303V|TEAD2_uc002pnh.2_Silent_p.V304V|TEAD2_uc002pni.2_Silent_p.V303V|TEAD2_uc010yao.1_Silent_p.V172V|TEAD2_uc010emw.2_Silent_p.V303V	NM_003598	NP_003589	Q15562	TEAD2_HUMAN	TEA domain family member 2	300	Transcriptional activation (Potential).				hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3		all_lung(116;7.65e-05)|Lung NSC(112;0.000132)|all_neural(266;0.0506)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00093)|GBM - Glioblastoma multiforme(486;0.0467)		CCCAGAACTTGACCAGGAAGA	0.547000													42	154					0	0	0	0
CPT1C	126129	broad.mit.edu	37	19	50204037	50204037	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:50204037G>A	uc002ppj.2	+	4	583	c.378G>A	c.(376-378)CTG>CTA	p.L126L	CPT1C_uc002ppl.3_Silent_p.L126L|CPT1C_uc002ppi.2_Silent_p.L43L|CPT1C_uc002ppk.2_Silent_p.L126L|CPT1C_uc010eng.2_Silent_p.L126L|CPT1C_uc010enh.2_Silent_p.L126L|CPT1C_uc010ybc.1_Intron	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	126	Helical; (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		ACGTGGCCCTGAGGCTGCTTC	0.657000													57	174					0	0	0	0
SIGLEC16	400709	broad.mit.edu	37	19	50473448	50473448	+	RNA	SNP	G	C	C	rs144693643	by1000genomes	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:50473448G>C	uc002prf.2	+	2		c.467G>C			SIGLEC16_uc010ybj.1_5'Flank|uc010ybk.1_5'Flank	NR_002825				Homo sapiens cDNA FLJ50062 complete cds, highly similar to Sialic acid-binding Ig-like lectin 11 precursor.												0						AAAAGTAACAGGTATGGAATG	0.562000													5	16					0	0	0	0
GPR32	2854	broad.mit.edu	37	19	51274298	51274298	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:51274298C>G	uc010ycf.1	+	1	441	c.441C>G	c.(439-441)GTC>GTG	p.V147V		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	147	Cytoplasmic (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		TCTACCCCGTCTGGGCCCTGA	0.592000													26	102					0	0	0	0
ZNF649	65251	broad.mit.edu	37	19	52395143	52395143	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:52395143C>G	uc002pxy.2	-	5	514	c.246G>C	c.(244-246)GAG>GAC	p.E82D	ZNF577_uc010ydf.1_5'Flank	NM_023074	NP_075562	Q9BS31	ZN649_HUMAN	zinc finger protein 649	82					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00152)|OV - Ovarian serous cystadenocarcinoma(262;0.0185)		CATCAGCTTTCTCAATTTCTA	0.408000													9	25					0	0	0	0
ZNF808	388558	broad.mit.edu	37	19	53058363	53058363	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:53058363G>A	uc010epq.1	+	5	2371	c.2194G>A	c.(2194-2196)GAG>AAG	p.E732K	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	732					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		TCATAGTGGTGAGAAACCTTA	0.433000													38	124					0	0	0	0
ZNF702P	79986	broad.mit.edu	37	19	53473895	53473895	+	RNA	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:53473895C>T	uc002qan.3	-	4		c.606G>A				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						TTTTTTATCTCTGTCATGAGT	0.378000													22	39					0	0	0	0
CNOT3	4849	broad.mit.edu	37	19	54656013	54656013	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:54656013C>G	uc002qdj.1	+	14	1967	c.1656C>G	c.(1654-1656)ATC>ATG	p.I552M	CNOT3_uc010yel.1_Missense_Mutation_p.I552M|CNOT3_uc002qdi.2_Missense_Mutation_p.I465M|CNOT3_uc002qdk.1_Missense_Mutation_p.I552M|CNOT3_uc010ere.1_RNA|CNOT3_uc002qdl.2_Missense_Mutation_p.I7M	NM_014516	NP_055331	O75175	CNOT3_HUMAN	CCR4-NOT transcription complex, subunit 3	552	Pro-rich.				nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GGGCAGCCATCAGCTCTGGCA	0.647000													25	42					0	0	0	0
LILRA6	79168	broad.mit.edu	37	19	54745500	54745500	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:54745500G>T	uc002qeu.1	-	4	734	c.610C>A	c.(610-612)CCC>ACC	p.P204T	LILRB3_uc002qeh.1_Intron|LILRB3_uc002qeg.1_Intron|LILRB3_uc002qei.1_Missense_Mutation_p.P204T|LILRA6_uc002qek.1_Missense_Mutation_p.P204T|LILRB3_uc010erh.1_Intron|LILRB3_uc002qej.1_Intron|LILRA6_uc002qel.1_Missense_Mutation_p.P204T|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_Intron|LILRB3_uc002qeo.1_Missense_Mutation_p.P204T|LILRB3_uc002qep.1_Intron|LILRB3_uc002qeq.1_Missense_Mutation_p.P204T|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Missense_Mutation_p.P204T|LILRA6_uc010yep.1_Missense_Mutation_p.P204T|LILRA6_uc010yeq.1_Missense_Mutation_p.P204T|LILRA6_uc002qet.3_Intron|LILRA6_uc002qev.1_Missense_Mutation_p.P65T	NM_024318	NP_077294	Q6PI73	LIRA6_HUMAN	leukocyte immunoglobulin-like receptor,	204	Extracellular (Potential).					integral to membrane	receptor activity			skin(2)	2	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CACACCCGGGGGGTGTTTGTA	0.617000													46	130					1.91693e-13	1.98474e-13	1	0
RPL28	6158	broad.mit.edu	37	19	55897785	55897785	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:55897785G>T	uc002qkv.2	+	2	102	c.60G>T	c.(58-60)AGG>AGT	p.R20S	uc002qku.2_5'Flank|RPL28_uc010yfz.1_Missense_Mutation_p.R20S|RPL28_uc010yfy.1_Missense_Mutation_p.R20S|RPL28_uc010yga.1_Missense_Mutation_p.R20S|RPL28_uc010ygb.1_Missense_Mutation_p.R20S|RPL28_uc002qkw.1_Missense_Mutation_p.R20S	NM_000991	NP_000982	P46779	RL28_HUMAN	ribosomal protein L28 isoform 2	20					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0	Breast(117;0.191)	Renal(1328;0.245)	LUSC - Lung squamous cell carcinoma(43;0.13)|BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0443)		TGATCAAGAGGAATAAGCAGA	0.607000													9	16					0.000978159	0.000984889	1	0
NLRP11	204801	broad.mit.edu	37	19	56303677	56303677	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:56303677C>G	uc010ygf.1	-	9	3214	c.2503G>C	c.(2503-2505)GAG>CAG	p.E835Q	NLRP11_uc002qlz.2_Missense_Mutation_p.E682Q|NLRP11_uc002qmb.2_Missense_Mutation_p.E736Q|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	835							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		TGAAGCTCCTCTAACTGACAG	0.488000													26	46					0	0	0	0
ZIM3	114026	broad.mit.edu	37	19	57646835	57646835	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:57646835C>G	uc002qnz.1	-	5	1256	c.870G>C	c.(868-870)CAG>CAC	p.Q290H		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	290	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GGGTTGAGTTCTGCCTGAAGG	0.373000													26	71					0	0	0	0
ZSCAN22	342945	broad.mit.edu	37	19	58846211	58846211	+	Missense_Mutation	SNP	G	C	C	rs143306274	byFrequency	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr19:58846211G>C	uc002qsc.2	+	2	190	c.43G>C	c.(43-45)GAG>CAG	p.E15Q	ZSCAN22_uc010yhz.1_Missense_Mutation_p.E15Q	NM_181846	NP_862829	P10073	ZSC22_HUMAN	zinc finger and SCAN domain containing 22	15					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1		all_cancers(17;3.11e-12)|all_epithelial(17;9.43e-09)|Colorectal(82;0.000256)|Lung NSC(17;0.000607)|all_lung(17;0.0024)|all_neural(62;0.0412)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0289)		GCCGTGGGAAGAGGACAGCTT	0.617000													14	39					0	0	0	0
KIDINS220	57498	broad.mit.edu	37	2	8919884	8919884	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:8919884G>C	uc002qzc.2	-	18	2472	c.2290C>G	c.(2290-2292)CAG>GAG	p.Q764E	KIDINS220_uc010yiv.1_Missense_Mutation_p.Q530E|KIDINS220_uc002qzd.2_Missense_Mutation_p.Q722E|KIDINS220_uc010yiw.1_Missense_Mutation_p.Q765E	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	764	KAP NTPase.|Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GTCTGATTCTGAGTGAAGCTG	0.458000													11	27					0	0	0	0
NBAS	51594	broad.mit.edu	37	2	15470866	15470866	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:15470866G>A	uc002rcc.1	-	36	4229	c.4203C>T	c.(4201-4203)AGC>AGT	p.S1401S	NBAS_uc010exl.1_Silent_p.S473S|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	1401										ovary(2)|liver(1)|skin(1)	4						CAGCTGAATTGCTACCTGGAA	0.463000													18	38					0	0	0	0
C2orf43	60526	broad.mit.edu	37	2	21001118	21001118	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:21001118G>C	uc002rec.2	-	2	139	c.106C>G	c.(106-108)CAT>GAT	p.H36D	C2orf43_uc002rea.1_Missense_Mutation_p.H36D|C2orf43_uc002reb.1_Intron|C2orf43_uc010yka.1_Missense_Mutation_p.H36D|C2orf43_uc010ykb.1_Intron|C2orf43_uc010ykc.1_Missense_Mutation_p.H36D|C2orf43_uc010ykd.1_Missense_Mutation_p.H36D|C2orf43_uc010yke.1_Missense_Mutation_p.H36D|C2orf43_uc010ykf.1_Intron	NM_021925	NP_068744	Q9H6V9	CB043_HUMAN	hypothetical protein LOC60526	36											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTTTGATCATGAAAGAGGTCT	0.428000													17	45					0	0	0	0
APOB	338	broad.mit.edu	37	2	21232479	21232479	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:21232479C>G	uc002red.2	-	26	7389	c.7261G>C	c.(7261-7263)GAC>CAC	p.D2421H		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2421					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATCAACATGTCAAGGAATTTG	0.313000													15	17					0	0	0	0
IFT172	26160	broad.mit.edu	37	2	27680779	27680779	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:27680779C>G	uc002rku.2	-	28	3091	c.3040G>C	c.(3040-3042)GAT>CAT	p.D1014H		NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	1014					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					ATCATGTCATCATACAACTTG	0.512000													25	50					0	0	0	0
CLIP4	79745	broad.mit.edu	37	2	29366599	29366599	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:29366599G>A	uc002rmv.2	+	7	912	c.673G>A	c.(673-675)GAT>AAT	p.D225N	CLIP4_uc002rmu.2_Missense_Mutation_p.D225N|CLIP4_uc010ezm.1_Missense_Mutation_p.D225N|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Missense_Mutation_p.D207N	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	225										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					GATCCCTGCTGATGTTGTTCC	0.423000													17	62					0	0	0	0
DHX57	90957	broad.mit.edu	37	2	39070334	39070334	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:39070334C>G	uc002rrf.2	-	12	2337	c.2238G>C	c.(2236-2238)GGG>GGC	p.G746G	DHX57_uc002rrd.3_Silent_p.G130G|DHX57_uc002rre.2_Silent_p.G179G	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	746							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				TATATGGGCTCCCATCCTGTA	0.448000													6	14					0	0	0	0
COX7A2L	9167	broad.mit.edu	37	2	42580375	42580375	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:42580375G>C	uc002rsk.2	-	2	236	c.181C>G	c.(181-183)CCA>GCA	p.P61A	COX7A2L_uc002rsl.2_RNA	NM_004718	NP_004709	O14548	COX7R_HUMAN	cytochrome c oxidase subunit VIIa polypeptide 2	61					respiratory electron transport chain	mitochondrial respiratory chain	cytochrome-c oxidase activity|electron carrier activity				0						TGTAGCTCTGGAACTTTGTTT	0.393000													6	30					0	0	0	0
PREPL	9581	broad.mit.edu	37	2	44586819	44586819	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:44586819C>T	uc002ruf.2	-	1	71	c.36G>A	c.(34-36)TTG>TTA	p.L12L	PREPL_uc002rug.2_Silent_p.L12L|PREPL_uc002ruh.2_Silent_p.L12L|PREPL_uc010fax.2_Silent_p.L12L|PREPL_uc002rui.3_Intron|PREPL_uc002ruj.1_Intron|PREPL_uc002ruk.1_Silent_p.L12L|C2orf34_uc002rum.2_5'Flank|C2orf34_uc002rul.2_5'Flank	NM_006036	NP_006027	Q4J6C6	PPCEL_HUMAN	prolyl endopeptidase-like isoform C	12					proteolysis	cytosol	serine-type endopeptidase activity			ovary(1)	1		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				TACTATACTTCAAAGCTTGGA	0.358000													19	43					0	0	0	0
EPCAM	4072	broad.mit.edu	37	2	47600696	47600696	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:47600696C>T	uc002rvx.2	+	2	529	c.171C>T	c.(169-171)GTC>GTT	p.V57V	EPCAM_uc002rvw.2_Silent_p.V85V	NM_002354	NP_002345	P16422	EPCAM_HUMAN	epithelial cell adhesion molecule precursor	57	Extracellular (Potential).				positive regulation of cell proliferation	apical plasma membrane|basolateral plasma membrane|integral to membrane|lateral plasma membrane|tight junction	protein binding			skin(1)	1						AAAATACTGTCATTTGCTCAA	0.348000									Lynch_syndrome				9	34					0	0	0	0
KIAA1841	84542	broad.mit.edu	37	2	61304130	61304130	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:61304130G>C	uc002saw.3	+	6	810	c.507G>C	c.(505-507)TTG>TTC	p.L169F	KIAA1841_uc002sax.3_Missense_Mutation_p.L23F|KIAA1841_uc002say.2_Missense_Mutation_p.L169F|KIAA1841_uc002sav.3_Missense_Mutation_p.L169F	NM_001129993	NP_001123465	Q6NSI8	K1841_HUMAN	KIAA1841 protein isoform a	169											0			Epithelial(17;0.193)			GAGATCTTTTGATATCAGAAA	0.378000													12	51					0	0	0	0
LOC388955	388955	broad.mit.edu	37	2	63849634	63849634	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:63849634C>G	uc002sck.1	-	1	526	c.332G>C	c.(331-333)CGA>CCA	p.R111P		NR_003131				SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;												0						GTAAACACATCGTTCCTCCAC	0.537000													7	18					0	0	0	0
VPS54	51542	broad.mit.edu	37	2	64147045	64147045	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:64147045C>T	uc002scq.2	-	15	2299	c.2136G>A	c.(2134-2136)AAG>AAA	p.K712K	VPS54_uc002scp.2_Silent_p.K700K|VPS54_uc002scn.2_5'UTR|VPS54_uc002sco.2_Silent_p.K197K|VPS54_uc010fct.2_Silent_p.K559K	NM_016516	NP_057600	Q9P1Q0	VPS54_HUMAN	vacuolar protein sorting 54 isoform 1	712					protein transport|retrograde transport, endosome to Golgi						0						GTAAAGCAATCTTCCCATCTG	0.353000													7	24					0	0	0	0
VPS54	51542	broad.mit.edu	37	2	64147053	64147053	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:64147053C>T	uc002scq.2	-	15	2291	c.2128G>A	c.(2128-2130)GAT>AAT	p.D710N	VPS54_uc002scp.2_Missense_Mutation_p.D698N|VPS54_uc002scn.2_5'UTR|VPS54_uc002sco.2_Missense_Mutation_p.D195N|VPS54_uc010fct.2_Missense_Mutation_p.D557N	NM_016516	NP_057600	Q9P1Q0	VPS54_HUMAN	vacuolar protein sorting 54 isoform 1	710					protein transport|retrograde transport, endosome to Golgi						0						ATCTTCCCATCTGACAGAGAA	0.363000													8	25					0	0	0	0
SERTAD2	9792	broad.mit.edu	37	2	64863474	64863474	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:64863474C>T	uc002sde.1	-	2	829	c.532G>A	c.(532-534)GAG>AAG	p.E178K		NM_014755	NP_055570	Q14140	SRTD2_HUMAN	SERTA domain containing 2	178					negative regulation of cell growth|transcription, DNA-dependent	cytoplasm|nucleus					0						GGACAGAGCTCCTCGATCTCG	0.617000													27	38					0	0	0	0
DYSF	8291	broad.mit.edu	37	2	71894634	71894634	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:71894634G>A	uc002sie.2	+	47	5705	c.5329G>A	c.(5329-5331)GAC>AAC	p.D1777N	DYSF_uc010feg.2_Missense_Mutation_p.D1808N|DYSF_uc010feh.2_Missense_Mutation_p.D1784N|DYSF_uc002sig.3_Missense_Mutation_p.D1763N|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.D1798N|DYSF_uc010fef.2_Missense_Mutation_p.D1815N|DYSF_uc010fei.2_Missense_Mutation_p.D1794N|DYSF_uc010fek.2_Missense_Mutation_p.D1795N|DYSF_uc010fej.2_Missense_Mutation_p.D1785N|DYSF_uc010fel.2_Missense_Mutation_p.D1764N|DYSF_uc010feo.2_Missense_Mutation_p.D1809N|DYSF_uc010fem.2_Missense_Mutation_p.D1799N|DYSF_uc010fen.2_Missense_Mutation_p.D1816N|DYSF_uc002sif.2_Missense_Mutation_p.D1778N|DYSF_uc010yqy.1_Missense_Mutation_p.D658N|DYSF_uc010yqz.1_Missense_Mutation_p.D538N	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1777	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CCTGCAGCCAGACATCGAGCA	0.637000													5	23					0	0	0	0
TET3	200424	broad.mit.edu	37	2	74326531	74326531	+	Silent	SNP	A	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:74326531A>C	uc002skb.3	+	8	2991	c.2991A>C	c.(2989-2991)GCA>GCC	p.A997A		NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	997							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						ACCAGAATGCAAAGGTGGGCA	0.637000													9	39					0	0	0	0
WDR54	84058	broad.mit.edu	37	2	74649312	74649312	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:74649312G>T	uc002slb.2	+	2	92	c.32G>T	c.(31-33)CGA>CTA	p.R11L		NM_032118	NP_115494	Q9H977	WDR54_HUMAN	WD repeat domain 54	11											0						ATTCCCCTGCGAGGCTCGGCC	0.652000													14	54					1.49906e-05	1.52159e-05	1	0
POLR1A	25885	broad.mit.edu	37	2	86276114	86276114	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:86276114G>A	uc002sqs.2	-	18	2906	c.2527C>T	c.(2527-2529)CGA>TGA	p.R843*	POLR1A_uc010ytb.1_Nonsense_Mutation_p.R209*	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	843					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						CATTTTCCTCGGACCTCATCA	0.493000													14	28					0	0	0	0
IMMT	10989	broad.mit.edu	37	2	86373214	86373214	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:86373214C>T	uc002sqz.3	-	14	2028	c.1640G>A	c.(1639-1641)AGA>AAA	p.R547K	IMMT_uc002sqy.3_Missense_Mutation_p.R288K|IMMT_uc002srb.3_Missense_Mutation_p.R536K|IMMT_uc002sra.3_Missense_Mutation_p.R546K|IMMT_uc010ytd.1_Missense_Mutation_p.R535K|IMMT_uc010yte.1_Missense_Mutation_p.R500K|IMMT_uc002src.1_Missense_Mutation_p.R283K	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	547	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						TTCGATTCCTCTGAGTCTGGC	0.353000													5	11					0	0	0	0
Unknown	0	broad.mit.edu	37	2	89533816	89533816	+	RNA	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:89533816C>T	uc010ytr.1	-	16		c.2078G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGATCAGGAGCTGTGGAGACT	0.537000													10	20					0	0	0	0
CNNM4	26504	broad.mit.edu	37	2	97427042	97427042	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:97427042C>G	uc002swx.2	+	1	404	c.306C>G	c.(304-306)CTC>CTG	p.L102L		NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	102					biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						CCGAGACCCTCCACAAGTCCA	0.637000													11	28					0	0	0	0
CHST10	9486	broad.mit.edu	37	2	101011994	101011994	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:101011994G>A	uc002tam.2	-	6	869	c.510C>T	c.(508-510)TTC>TTT	p.F170F		NM_004854	NP_004845	O43529	CHSTA_HUMAN	HNK-1 sulfotransferase	170	Lumenal (Potential).				carbohydrate biosynthetic process|cell adhesion	Golgi membrane|integral to membrane|membrane fraction				ovary(1)	1						CTGCATCACTGAAGGAAGAGA	0.502000													10	31					0	0	0	0
RNF149	284996	broad.mit.edu	37	2	101925032	101925032	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:101925032C>T	uc002taz.1	-	1	121	c.19G>A	c.(19-21)GAA>AAA	p.E7K	RNF149_uc002tax.1_RNA	NM_173647	NP_775918	Q8NC42	RN149_HUMAN	ring finger protein 149 precursor	7			E -> K (in a breast cancer sample; somatic mutation).			integral to membrane	ligase activity|zinc ion binding	p.E7K(1)		ovary(1)|breast(1)	2						ACGCTGGCTTCGCGCCGCCGC	0.622000													4	9					0	0	0	0
DPP10	57628	broad.mit.edu	37	2	116497356	116497356	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:116497356G>A	uc002tla.1	+	9	1196	c.739G>A	c.(739-741)GAT>AAT	p.D247N	DPP10_uc002tlb.1_Missense_Mutation_p.D197N|DPP10_uc002tlc.1_Missense_Mutation_p.D243N|DPP10_uc002tle.2_Missense_Mutation_p.D251N|DPP10_uc002tlf.1_Missense_Mutation_p.D240N	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	247	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						GTGGTCACCAGATGGAGAAAG	0.468000													19	61					0	0	0	0
LOC401010	401010	broad.mit.edu	37	2	132201582	132201582	+	Silent	SNP	A	G	G	rs1806886	by1000genomes	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:132201582A>G	uc002tst.2	-	1	886	c.420T>C	c.(418-420)CGT>CGC	p.R140R		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						TAAGCAGCATACGGCACTGCT	0.602000													7	30					0	0	0	0
LOC401010	401010	broad.mit.edu	37	2	132201663	132201663	+	Silent	SNP	T	C	C	rs1317139	by1000genomes	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:132201663T>C	uc002tst.2	-	1	805	c.339A>G	c.(337-339)GCA>GCG	p.A113A		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						CCATCGTCTCTGCCACACAGG	0.607000													7	10					0	0	0	0
LOC150776	150776	broad.mit.edu	37	2	132274474	132274474	+	5'Flank	SNP	G	A	A	rs13010688	by1000genomes	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:132274474G>A	uc002tsz.3	+						LOC150776_uc010fna.2_Silent_p.A114A|LOC150776_uc002tsy.3_RNA					Homo sapiens cDNA FLJ41352 fis, clone BRAWH2014645.												0						GGCGGTACGCGCCTGACAAGC	0.657000													13	31					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	141607782	141607782	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:141607782C>T	uc002tvj.1	-	29	5800	c.4828G>A	c.(4828-4830)GTG>ATG	p.V1610M	LRP1B_uc010fnl.1_Missense_Mutation_p.V792M	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1610	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AAGTCTATCACAGTAACGTCA	0.373000										TSP Lung(27;0.18)			14	53					0	0	0	0
RIF1	55183	broad.mit.edu	37	2	152318760	152318760	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:152318760G>C	uc002txm.2	+	28	3362	c.3232G>C	c.(3232-3234)GAT>CAT	p.D1078H	RIF1_uc002txl.2_Missense_Mutation_p.D1078H|RIF1_uc002txn.2_Missense_Mutation_p.D1078H|RIF1_uc002txo.2_Missense_Mutation_p.D1078H|RIF1_uc002txp.2_5'Flank	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1078					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		TTTCAGGTGTGATATTCCTGC	0.269000													9	22					0	0	0	0
LY75	4065	broad.mit.edu	37	2	160710889	160710889	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:160710889G>C	uc002ubc.3	-	18	2646	c.2577C>G	c.(2575-2577)ATC>ATG	p.I859M	LY75_uc002ubb.3_Missense_Mutation_p.I859M|LY75_uc010fos.2_Missense_Mutation_p.I859M	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	859	Extracellular (Potential).|C-type lectin 5.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TTTTGTTTTTGATGGCTTTTA	0.249000													10	25					0	0	0	0
ITGB6	3694	broad.mit.edu	37	2	161025725	161025725	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:161025725C>T	uc002ubh.2	-	7	1031	c.1015G>A	c.(1015-1017)GAG>AAG	p.E339K	ITGB6_uc010fow.1_RNA|ITGB6_uc010fou.2_Missense_Mutation_p.E339K|ITGB6_uc010zcq.1_Missense_Mutation_p.E297K|ITGB6_uc010fov.1_Missense_Mutation_p.E339K	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	339	Extracellular (Potential).|VWFA.				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						TTGCTTACCTCATATAAATGA	0.338000													17	51					0	0	0	0
CSRNP3	80034	broad.mit.edu	37	2	166535844	166535844	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:166535844C>T	uc002udf.2	+	7	1715	c.1339C>T	c.(1339-1341)CCA>TCA	p.P447S	CSRNP3_uc002udg.2_Missense_Mutation_p.P447S	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	447					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						TCCAGGAACTCCAAATCAGAT	0.443000													22	42					0	0	0	0
LASS6	253782	broad.mit.edu	37	2	169571586	169571586	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:169571586C>T	uc002ueb.1	+	7	809	c.685C>T	c.(685-687)CGA>TGA	p.R229*	LASS6_uc002uec.1_Nonsense_Mutation_p.R229*	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6	229	Cytoplasmic (Potential).|TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			skin(1)	1						CAATATGGCCCGAGTAGGAAC	0.373000													25	67					0	0	0	0
G6PC2	57818	broad.mit.edu	37	2	169758992	169758992	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:169758992G>C	uc002uem.2	+	2	348	c.256G>C	c.(256-258)GAA>CAA	p.E86Q	G6PC2_uc002uen.2_Missense_Mutation_p.E86Q|G6PC2_uc010fpv.2_Intron	NM_021176	NP_066999	Q9NQR9	G6PC2_HUMAN	islet-specific glucose-6-phosphatase-related	86	Lumenal (Potential).				gluconeogenesis|glucose homeostasis|glucose transport|regulation of insulin secretion|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	glucose-6-phosphatase activity			pancreas(1)	1						GTGGGTCCAAGAAACTCAGAT	0.368000													21	28					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179416576	179416576	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:179416576C>T	uc010zfg.1	-	284	83571	c.83347G>A	c.(83347-83349)GAT>AAT	p.D27783N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D21478N|TTN_uc010zfi.1_Missense_Mutation_p.D21411N|TTN_uc010zfj.1_Missense_Mutation_p.D21286N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28710							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAACCACCATCATAAACTGGA	0.413000													44	72					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179437484	179437484	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:179437484C>T	uc010zfg.1	-	275	65895	c.65671G>A	c.(65671-65673)GAG>AAG	p.E21891K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E15586K|TTN_uc010zfi.1_Missense_Mutation_p.E15519K|TTN_uc010zfj.1_Missense_Mutation_p.E15394K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22818							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTTCACCTCAGGTGCAGGC	0.468000													9	40					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179466637	179466637	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:179466637C>G	uc010zfg.1	-	234	47794	c.47570G>C	c.(47569-47571)GGA>GCA	p.G15857A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G9552A|TTN_uc010zfi.1_Missense_Mutation_p.G9485A|TTN_uc010zfj.1_Missense_Mutation_p.G9360A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16784							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCATGAACTCCATCCTATTA	0.313000													10	25					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179615718	179615718	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:179615718C>T	uc002unb.2	-	46	11633	c.11409G>A	c.(11407-11409)CAG>CAA	p.Q3803Q	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTATTTCAGTCTGGAAAATTT	0.348000													21	61					0	0	0	0
ZNF385B	151126	broad.mit.edu	37	2	180634461	180634461	+	Missense_Mutation	SNP	G	A	A	rs146268620		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:180634461G>A	uc002unn.3	-	3	626	c.22C>T	c.(22-24)CGG>TGG	p.R8W		NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	8						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			TCAAAGCCCCGTAGAAAATTT	0.413000													11	30					0	0	0	0
COL3A1	1281	broad.mit.edu	37	2	189870942	189870942	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:189870942G>C	uc002uqj.1	+	42	3167	c.3050G>C	c.(3049-3051)GGA>GCA	p.G1017A		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1017	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGAAACCCTGGATCAGATGGT	0.313000													12	26					0	0	0	0
OSGEPL1	64172	broad.mit.edu	37	2	190618673	190618673	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:190618673C>G	uc002uqz.1	-	5	1466	c.932G>C	c.(931-933)AGA>ACA	p.R311T	OSGEPL1_uc002ura.1_RNA	NM_022353	NP_071748	Q9H4B0	OSGP2_HUMAN	O-sialoglycoprotein endopeptidase-like 1	311					proteolysis|tRNA processing		metalloendopeptidase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0293)|all cancers(119;0.0831)			TAACAAGTCTCTCTGCTTACA	0.378000													7	14					0	0	0	0
OSGEPL1	64172	broad.mit.edu	37	2	190618706	190618706	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:190618706C>G	uc002uqz.1	-	5	1433	c.899G>C	c.(898-900)AGA>ACA	p.R300T	OSGEPL1_uc002ura.1_RNA	NM_022353	NP_071748	Q9H4B0	OSGP2_HUMAN	O-sialoglycoprotein endopeptidase-like 1	300					proteolysis|tRNA processing		metalloendopeptidase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0293)|all cancers(119;0.0831)			CCGATGTGTTCTTTTCACAAG	0.403000													8	17					0	0	0	0
MYO1B	4430	broad.mit.edu	37	2	192160862	192160862	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:192160862C>T	uc010fsg.2	+	3	416	c.161C>T	c.(160-162)TCT>TTT	p.S54F	MYO1B_uc002usq.2_Missense_Mutation_p.S54F|MYO1B_uc002usr.2_Missense_Mutation_p.S54F|MYO1B_uc002uss.1_Missense_Mutation_p.S54F	NM_001130158	NP_001123630	O43795	MYO1B_HUMAN	myosin IB isoform 1	54	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(5)|large_intestine(2)|ovary(1)	8			OV - Ovarian serous cystadenocarcinoma(117;0.0112)|Epithelial(96;0.104)|all cancers(119;0.236)			GTGGTTATATCTGTTAACCCA	0.358000													8	15					0	0	0	0
DNAH7	56171	broad.mit.edu	37	2	196741391	196741391	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:196741391G>C	uc002utj.3	-	37	6095	c.5994C>G	c.(5992-5994)ATC>ATG	p.I1998M		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1998	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GAGGTTTGTAGATTTCCTTAT	0.294000													8	25					0	0	0	0
SF3B1	23451	broad.mit.edu	37	2	198288627	198288627	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:198288627C>G	uc002uue.2	-	2	148	c.100G>C	c.(100-102)GAT>CAT	p.D34H	SF3B1_uc010fsk.1_RNA|SF3B1_uc002uuf.2_Missense_Mutation_p.D34H|SF3B1_uc002uug.2_Missense_Mutation_p.D34H	NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	34					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			CCTGTAGAATCGAGGCCCACT	0.398000													16	23					0	0	0	0
ALS2	57679	broad.mit.edu	37	2	202622442	202622442	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:202622442G>A	uc002uyo.2	-	5	1510	c.1154C>T	c.(1153-1155)CCT>CTT	p.P385L	ALS2_uc002uyp.3_Missense_Mutation_p.P385L|ALS2_uc002uyq.2_Missense_Mutation_p.P385L	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	385					cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						GCTTGTGGTAGGCGGGCTGTG	0.428000													11	39					0	0	0	0
GPR1	2825	broad.mit.edu	37	2	207041356	207041356	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:207041356G>C	uc002vbl.3	-	3	1002	c.616C>G	c.(616-618)CTG>GTG	p.L206V	GPR1_uc010fue.2_Missense_Mutation_p.L206V|GPR1_uc010fuf.2_Missense_Mutation_p.L206V	NM_005279	NP_005270	P46091	GPR1_HUMAN	G protein-coupled receptor 1	206	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Lung NSC(271;7.93e-06)|Renal(323;0.000147)|Hepatocellular(293;0.000888)		UCEC - Uterine corpus endometrioid carcinoma (47;0.000241)|Epithelial(149;1.91e-37)|STAD - Stomach adenocarcinoma(1183;0.00178)|Lung(261;0.111)|LUSC - Lung squamous cell carcinoma(261;0.184)		ACCCAAGTCAGAACATGGTGC	0.413000													17	37					0	0	0	0
TNS1	7145	broad.mit.edu	37	2	218699846	218699846	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:218699846C>T	uc002vgt.2	-	19	3271	c.2873G>A	c.(2872-2874)GGA>GAA	p.G958E	TNS1_uc002vgr.2_Missense_Mutation_p.G958E|TNS1_uc002vgs.2_Missense_Mutation_p.G958E|TNS1_uc010zjv.1_Missense_Mutation_p.G958E	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	958						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		CGGGGAGGTTCCCTCCATCTC	0.582000													14	34					0	0	0	0
SLC11A1	6556	broad.mit.edu	37	2	219249962	219249962	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:219249962C>T	uc002vhv.2	+	4	706	c.366C>T	c.(364-366)GGC>GGT	p.G122G	SLC11A1_uc010zkb.1_Silent_p.G122G|SLC11A1_uc010fvp.1_Silent_p.G122G|SLC11A1_uc010fvq.1_Silent_p.G55G|SLC11A1_uc010zkc.1_Silent_p.G55G|SLC11A1_uc002vhu.1_5'UTR|SLC11A1_uc002vhw.2_5'UTR|SLC11A1_uc010fvr.2_5'Flank	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	122	Cytoplasmic (Potential).				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGGACTTGGGCGAGGTCTGCC	0.612000													36	103					0	0	0	0
COL4A3	1285	broad.mit.edu	37	2	228131711	228131711	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:228131711G>A	uc002vom.1	+	23	1573	c.1411G>A	c.(1411-1413)GAA>AAA	p.E471K	COL4A3_uc002von.1_Missense_Mutation_p.E471K|COL4A3_uc002voo.1_Missense_Mutation_p.E471K|COL4A3_uc002vop.1_Missense_Mutation_p.E471K|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	471	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		CATTGCAGGAGAACCAGGCCT	0.433000													9	12					0	0	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884456	228884456	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:228884456C>T	uc002vpq.2	-	7	1161	c.1114G>A	c.(1114-1116)GAA>AAA	p.E372K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E372K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E372K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	372						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTTGTGTCTTCATGGTCTCCT	0.443000													19	36					0	0	0	0
MLPH	79083	broad.mit.edu	37	2	238427235	238427235	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:238427235G>A	uc002vwt.2	+	5	726	c.499G>A	c.(499-501)GAG>AAG	p.E167K	MLPH_uc002vws.2_Missense_Mutation_p.E167K|MLPH_uc010fyt.1_Missense_Mutation_p.E167K|MLPH_uc002vwu.2_Missense_Mutation_p.E167K|MLPH_uc002vwv.2_Missense_Mutation_p.E167K|MLPH_uc002vww.2_Missense_Mutation_p.E143K|MLPH_uc002vwx.2_Missense_Mutation_p.E51K|MLPH_uc010fyu.2_5'Flank	NM_024101	NP_077006	Q9BV36	MELPH_HUMAN	melanophilin isoform 1	167							metal ion binding			ovary(1)	1		Breast(86;0.000381)|Renal(207;0.000966)|Ovarian(221;0.0695)|all_hematologic(139;0.095)|all_lung(227;0.17)|Melanoma(123;0.203)		Epithelial(121;1.17e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.02e-10)|Kidney(56;4.23e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.15e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000439)|Lung(119;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0316)		CCAGACAGATGAGGATGGAGA	0.567000													9	10					0	0	0	0
NSFL1C	55968	broad.mit.edu	37	20	1438855	1438855	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:1438855C>T	uc002wfc.2	-	3	1216	c.268G>A	c.(268-270)GAA>AAA	p.E90K	NSFL1C_uc002wfd.2_Silent_p.R10R|NSFL1C_uc002wfe.2_Missense_Mutation_p.E90K|NSFL1C_uc002wff.2_RNA	NM_016143	NP_057227	Q9UNZ2	NSF1C_HUMAN	p47 protein isoform a	90	Poly-Glu.					chromosome|Golgi stack|nucleus	lipid binding|protein binding				0						CTCTGGCCTTCCTCTTCCTCC	0.478000													28	73					0	0	0	0
SIRPA	140885	broad.mit.edu	37	20	1918023	1918023	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:1918023C>T	uc002wfq.2	+	9	1684	c.1324C>T	c.(1324-1326)CCC>TCC	p.P442S	SIRPA_uc010zps.1_Missense_Mutation_p.P422S|SIRPA_uc002wfr.2_Missense_Mutation_p.P442S|SIRPA_uc002wfs.2_Missense_Mutation_p.P442S|SIRPA_uc002wft.2_Missense_Mutation_p.P446S	NM_001040022	NP_001035111	P78324	SHPS1_HUMAN	signal-regulatory protein alpha precursor	442	Cytoplasmic (Potential).|SH3-binding (Potential).				blood coagulation|cell adhesion|cell junction assembly|leukocyte migration	integral to membrane|plasma membrane	SH3 domain binding			ovary(1)	1				Colorectal(46;0.018)|READ - Rectum adenocarcinoma(1;0.0556)		GAAGCCTGCTCCCCAGGCTGC	0.542000													14	38					0	0	0	0
PDYN	5173	broad.mit.edu	37	20	1961355	1961355	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:1961355C>T	uc010gaj.2	-	3	621	c.379G>A	c.(379-381)GAG>AAG	p.E127K	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.E127K|PDYN_uc010zpt.1_Intron	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	127					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						AGCTTCTCCTCCAGGCTCTTG	0.547000													23	58					0	0	0	0
PTPRA	5786	broad.mit.edu	37	20	3008372	3008372	+	Missense_Mutation	SNP	C	G	G	rs138028158	byFrequency	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:3008372C>G	uc010zqd.1	+	19	2155	c.1838C>G	c.(1837-1839)TCC>TGC	p.S613C	PTPRA_uc002whj.2_Missense_Mutation_p.S602C|PTPRA_uc002whk.2_Missense_Mutation_p.S593C|PTPRA_uc002whl.2_Missense_Mutation_p.S593C|PTPRA_uc002whm.2_Missense_Mutation_p.S369C|PTPRA_uc002whn.2_Missense_Mutation_p.S593C|PTPRA_uc002who.2_Missense_Mutation_p.S265C	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	602	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						CAGAAGGACTCCTATATCGCC	0.517000													7	35					0	0	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3682042	3682042	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:3682042G>A	uc002wja.2	-	6	1475	c.1475C>T	c.(1474-1476)TCA>TTA	p.S492L	SIGLEC1_uc002wiz.3_Missense_Mutation_p.S492L	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	492	Ig-like C2-type 4.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						GTTGGTGGCTGAGCACTTGTA	0.587000													11	38					0	0	0	0
PANK2	80025	broad.mit.edu	37	20	3893244	3893244	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:3893244G>C	uc002wkc.2	+	4	1381	c.1375G>C	c.(1375-1377)GAG>CAG	p.E459Q	PANK2_uc002wkb.2_Missense_Mutation_p.E168Q|PANK2_uc002wkd.2_RNA|PANK2_uc002wke.2_Missense_Mutation_p.E168Q|PANK2_uc002wkf.2_Missense_Mutation_p.E23Q	NM_153638	NP_705902	Q9BZ23	PANK2_HUMAN	pantothenate kinase 2 isoform 1 preproprotein	459					cell death|coenzyme A biosynthetic process|pantothenate metabolic process	mitochondrial intermembrane space|nucleus	ATP binding|pantothenate kinase activity|protein binding				0						AGGGGACTATGAGAGGTTTGG	0.408000													24	42					0	0	0	0
SLC23A2	9962	broad.mit.edu	37	20	4866542	4866542	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:4866542G>C	uc002wlg.1	-	7	871	c.496C>G	c.(496-498)CAG>GAG	p.Q166E	SLC23A2_uc010zqr.1_Intron|SLC23A2_uc002wlh.1_Missense_Mutation_p.Q166E|SLC23A2_uc002wli.2_Missense_Mutation_p.Q165E	NM_005116	NP_005107	Q9UGH3	S23A2_HUMAN	solute carrier family 23 (nucleobase	166	Helical; (Potential).				L-ascorbic acid metabolic process|molecular hydrogen transport|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|transepithelial L-ascorbic acid transport	apical plasma membrane|integral to plasma membrane|membrane fraction	nucleobase transmembrane transporter activity|sodium-dependent L-ascorbate transmembrane transporter activity|sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2						GCACTGGCCTGAAACAGGGGT	0.433000													8	15					0	0	0	0
PCNA	5111	broad.mit.edu	37	20	5100331	5100331	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:5100331C>T	uc002wlp.2	-	1	317	c.114G>A	c.(112-114)CAG>CAA	p.Q38Q	PCNA_uc002wlq.2_Silent_p.Q38Q|PCNA_uc010zqs.1_Silent_p.Q38Q	NM_182649	NP_872590	P12004	PCNA_HUMAN	proliferating cell nuclear antigen	38	Interaction with NUDT15.				cell proliferation|DNA strand elongation involved in DNA replication|mismatch repair|nucleotide-excision repair, DNA gap filling|phosphatidylinositol-mediated signaling|positive regulation of deoxyribonuclease activity|regulation of DNA replication|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair|translesion synthesis	cytoplasm|DNA replication factor C complex|microtubule cytoskeleton|nuclear replication fork|nucleoplasm|PCNA complex|PCNA-p21 complex	dinucleotide insertion or deletion binding|DNA polymerase processivity factor activity|MutLalpha complex binding|purine-specific mismatch base pair DNA N-glycosylase activity			lung(1)	1						AGTCCATGCTCTGCAGGTTTA	0.607000								DNA_polymerases_(catalytic_subunits)					4	11					0	0	0	0
C20orf72	92667	broad.mit.edu	37	20	17956539	17956539	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:17956539G>A	uc002wqh.2	+	3	806	c.724G>A	c.(724-726)GAG>AAG	p.E242K	C20orf72_uc010gco.2_Intron|C20orf72_uc010gcp.2_RNA	NM_052865	NP_443097	Q9BQP7	CT072_HUMAN	hypothetical protein LOC92667	242											0						CTGTGTGGCTGAGTATCAGTA	0.443000													15	43					0	0	0	0
NAPB	63908	broad.mit.edu	37	20	23358024	23358024	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:23358024C>G	uc002wta.2	-	11	1003	c.886G>C	c.(886-888)GAC>CAC	p.D296H	NAPB_uc002wtc.2_Missense_Mutation_p.D202H|NAPB_uc002wtb.2_Missense_Mutation_p.D300H|NAPB_uc002wtd.3_RNA|NAPB_uc010zss.1_Missense_Mutation_p.D183H|NAPB_uc010zst.1_Missense_Mutation_p.D257H	NM_022080	NP_071363	Q9H115	SNAB_HUMAN	N-ethylmaleimide-sensitive factor attachment	296					intracellular protein transport|vesicle-mediated transport	membrane				ovary(1)	1	Lung NSC(19;0.0646)|Colorectal(13;0.0993)|all_lung(19;0.143)					CATTTTAGGTCTCCATCTCCT	0.428000													5	13					0	0	0	0
PXMP4	11264	broad.mit.edu	37	20	32295530	32295530	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:32295530C>G	uc002wzv.2	-	4	744	c.621G>C	c.(619-621)AAG>AAC	p.K207N	PXMP4_uc002wzw.2_3'UTR|PXMP4_uc010zuh.1_3'UTR	NM_007238	NP_009169	Q9Y6I8	PXMP4_HUMAN	peroxisomal membrane protein 4 isoform a	207						integral to membrane|membrane fraction|mitochondrial inner membrane|peroxisomal membrane	protein transporter activity				0						AGGGACGGCTCTTGTTATAGA	0.537000													36	74					0	0	0	0
NCOA6	23054	broad.mit.edu	37	20	33329793	33329793	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:33329793G>A	uc002xav.2	-	12	6838	c.4267C>T	c.(4267-4269)CAG>TAG	p.Q1423*	NCOA6_uc002xaw.2_Nonsense_Mutation_p.Q1423*	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1423					brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						TCACTGTCCTGAGGCACATTC	0.463000													24	27					0	0	0	0
MYH7B	57644	broad.mit.edu	37	20	33588931	33588931	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:33588931G>A	uc002xbi.1	+	39	5663	c.5571G>A	c.(5569-5571)GGG>GGA	p.G1857G		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1815	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			TCCGTGGCGGGAAGAAGCAGG	0.657000													9	12					0	0	0	0
CEP250	11190	broad.mit.edu	37	20	34067824	34067824	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:34067824G>A	uc002xcm.2	+	21	3111	c.2440G>A	c.(2440-2442)GAA>AAA	p.E814K	CEP250_uc010zve.1_Missense_Mutation_p.E182K	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	814	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			CCTGAAGCTGGAACTGGACAC	0.582000													21	74					0	0	0	0
EPB41L1	2036	broad.mit.edu	37	20	34797520	34797520	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:34797520C>T	uc002xfb.2	+	15	1950	c.1779C>T	c.(1777-1779)TTC>TTT	p.F593F	EPB41L1_uc002xeu.2_Silent_p.F519F|EPB41L1_uc010zvo.1_Silent_p.F593F|EPB41L1_uc002xev.2_Silent_p.F593F|EPB41L1_uc002xew.2_Silent_p.F484F|EPB41L1_uc002xex.2_Intron|EPB41L1_uc002xey.2_Intron|EPB41L1_uc002xez.2_Silent_p.F519F|EPB41L1_uc010gfq.2_Silent_p.F692F	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	593					cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					ACACGGTGTTCCTGAAGGACA	0.607000													8	33					0	0	0	0
NDRG3	57446	broad.mit.edu	37	20	35317187	35317187	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:35317187C>G	uc002xfw.2	-	4	176	c.94G>C	c.(94-96)GAA>CAA	p.E32Q	NDRG3_uc002xfx.2_Missense_Mutation_p.E20Q|NDRG3_uc010zvq.1_Intron|NDRG3_uc010zvr.1_Intron	NM_032013	NP_114402	Q9UGV2	NDRG3_HUMAN	N-myc downstream regulated gene 3 isoform a	32				E -> G (in Ref. 3; AAL08807).	cell differentiation|negative regulation of cell growth|spermatogenesis	cytoplasm				ovary(1)	1		Myeloproliferative disorder(115;0.00878)				ATATCATGTTCCTGTAACAAG	0.423000													25	50					0	0	0	0
KIAA1755	85449	broad.mit.edu	37	20	36846669	36846669	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:36846669C>G	uc002xhy.1	-	12	2928	c.2656G>C	c.(2656-2658)GAG>CAG	p.E886Q	KIAA1755_uc002xhv.1_5'Flank|KIAA1755_uc002xhw.1_5'Flank|KIAA1755_uc002xhx.1_Missense_Mutation_p.E164Q	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	886										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				AAGAAGTTCTCAAATTCTGCG	0.577000													16	38					0	0	0	0
LBP	3929	broad.mit.edu	37	20	36993286	36993286	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:36993286G>A	uc002xic.1	+	8	836	c.801G>A	c.(799-801)ATG>ATA	p.M267I		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	267				VMSLP -> A (in Ref. 1; AAA59493).	acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				CTGCAGTCATGAGCCTTCCTG	0.463000													33	76					0	0	0	0
HNF4A	3172	broad.mit.edu	37	20	43043206	43043206	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:43043206C>G	uc002xma.2	+	5	641	c.552C>G	c.(550-552)ATC>ATG	p.I184M	HNF4A_uc002xlt.2_Missense_Mutation_p.I162M|HNF4A_uc002xlu.2_Missense_Mutation_p.I162M|HNF4A_uc002xlv.2_Missense_Mutation_p.I162M|HNF4A_uc002xly.2_Missense_Mutation_p.I184M|HNF4A_uc002xlz.2_Missense_Mutation_p.I184M|HNF4A_uc010ggq.2_Missense_Mutation_p.I177M	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	184					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			TTGCCAGCATCGCAGATGTGT	0.572000													12	37					0	0	0	0
ZSWIM3	140831	broad.mit.edu	37	20	44506830	44506830	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:44506830G>C	uc002xqd.2	+	2	1836	c.1633G>C	c.(1633-1635)GAT>CAT	p.D545H	ZSWIM3_uc010zxg.1_Missense_Mutation_p.D539H	NM_080752	NP_542790	Q96MP5	ZSWM3_HUMAN	zinc finger, SWIM domain containing 3	545	SWIM-type.						zinc ion binding			ovary(2)	2		Myeloproliferative disorder(115;0.0122)				GGTTAGCAAAGATGGCTGTAG	0.557000													14	41					0	0	0	0
ZNF335	63925	broad.mit.edu	37	20	44588038	44588038	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:44588038G>A	uc002xqw.2	-	15	2178	c.2055C>T	c.(2053-2055)TTC>TTT	p.F685F	ZNF335_uc010zxk.1_Silent_p.F530F	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	685	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				GCCGTGTGCTGAAGTGGCAGT	0.637000													6	17					0	0	0	0
FAM65C	140876	broad.mit.edu	37	20	49208922	49208922	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:49208922G>T	uc002xvm.2	-	19	2842	c.2524C>A	c.(2524-2526)CGC>AGC	p.R842S	FAM65C_uc010zyt.1_Missense_Mutation_p.R846S	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	842										ovary(2)	2						CCAGCCAGGCGAGCGCTGGCC	0.652000													12	34					3.35478e-16	3.49406e-16	1	0
ATP9A	10079	broad.mit.edu	37	20	50292704	50292704	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:50292704C>G	uc002xwg.1	-	10	843	c.843G>C	c.(841-843)CGG>CGC	p.R281R	ATP9A_uc010gih.1_Silent_p.R145R|ATP9A_uc002xwf.1_5'UTR	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	281	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						TCATGACACTCCGGAGTTCTC	0.423000													7	25					0	0	0	0
RPS21	6227	broad.mit.edu	37	20	60963404	60963404	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:60963404G>A	uc002ycr.2	+	5	316	c.226G>A	c.(226-228)GAT>AAT	p.D76N	RPS21_uc002ycs.2_Missense_Mutation_p.D76N|RPS21_uc002yct.2_3'UTR|RPS21_uc002ycu.2_Missense_Mutation_p.D76N	NM_001024	NP_001015	P63220	RS21_HUMAN	ribosomal protein S21	76					endocrine pancreas development|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein N-terminus binding|structural constituent of ribosome				0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)			GGCCAAGGCCGATGGCATCGT	0.493000													5	15					0	0	0	0
DIDO1	11083	broad.mit.edu	37	20	61512069	61512069	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:61512069G>A	uc002ydr.1	-	16	5503	c.5239C>T	c.(5239-5241)CAG>TAG	p.Q1747*	DIDO1_uc002yds.1_Nonsense_Mutation_p.Q1747*	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1747	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					AACGGGGGCTGAGAGCCCCCC	0.682000													30	62					0	0	0	0
PRIC285	85441	broad.mit.edu	37	20	62200815	62200815	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:62200815G>C	uc002yfm.2	-	5	1666	c.774C>G	c.(772-774)GGC>GGG	p.G258G	PRIC285_uc002yfl.1_5'Flank	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	258					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CCGGCCGGCGGCCAAAGTCGA	0.667000													6	9					0	0	0	0
RTEL1	51750	broad.mit.edu	37	20	62321792	62321792	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:62321792C>T	uc002yfu.1	+	26	2754	c.2411C>T	c.(2410-2412)TCA>TTA	p.S804L	RTEL1_uc011abc.1_RNA|RTEL1_uc002yft.1_Missense_Mutation_p.S804L|RTEL1_uc011abd.1_Missense_Mutation_p.S828L|RTEL1_uc011abe.1_Missense_Mutation_p.S581L|RTEL1_uc002yfw.2_RNA|RTEL1_uc002yfx.1_Missense_Mutation_p.S49L	NM_016434	NP_057518	Q9NZ71	RTEL1_HUMAN	regulator of telomere elongation helicase 1	804					DNA repair|regulation of double-strand break repair via homologous recombination|telomere maintenance	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding				0	all_cancers(38;6.47e-12)|all_epithelial(29;3.75e-13)		Epithelial(9;1.25e-09)|all cancers(9;5.13e-09)|BRCA - Breast invasive adenocarcinoma(10;7.26e-05)|OV - Ovarian serous cystadenocarcinoma(5;0.00223)|Colorectal(105;0.107)			CAGAGGTCCTCAGGTGCGGAC	0.697000													9	20					0	0	0	0
ZGPAT	84619	broad.mit.edu	37	20	62340463	62340463	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr20:62340463G>A	uc002ygk.2	+	2	709	c.531G>A	c.(529-531)CTG>CTA	p.L177L	ARFRP1_uc002yga.2_5'Flank|ARFRP1_uc002ygc.2_5'Flank|ARFRP1_uc002ygh.3_5'Flank|ARFRP1_uc011abf.1_5'Flank|ARFRP1_uc011abg.1_5'Flank|ARFRP1_uc002yge.2_5'Flank|ARFRP1_uc002ygd.2_5'Flank|ARFRP1_uc002ygf.2_5'Flank|ARFRP1_uc002ygg.2_5'Flank|ARFRP1_uc011abh.1_5'Flank|ZGPAT_uc002ygi.2_Silent_p.L177L|ZGPAT_uc002ygj.2_Silent_p.L177L|ZGPAT_uc010gkk.1_Intron|ZGPAT_uc010gkl.1_Silent_p.L177L|ZGPAT_uc002ygm.2_Silent_p.L177L|ZGPAT_uc002ygn.3_RNA	NM_032527	NP_115916	Q8N5A5	ZGPAT_HUMAN	zinc finger, CCCH-type with G patch domain	177	C3H1-type.				negative regulation of epidermal growth factor receptor activity|negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					ACAAGTCTCTGAAGCCGTGCC	0.572000													41	106					0	0	0	0
HMGN1	3150	broad.mit.edu	37	21	40720242	40720242	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr21:40720242C>T	uc002yxo.2	-	4	306	c.102G>A	c.(100-102)GCG>GCA	p.A34A	HMGN1_uc002yxp.2_5'UTR|HMGN1_uc002yxq.2_5'UTR|HMGN1_uc002yxr.2_RNA	NM_004965	NP_004956	P05114	HMGN1_HUMAN	high-mobility group nucleosome binding domain 1	34					positive regulation of transcription elongation, DNA-dependent	chromatin|cytoplasm|nucleus	DNA binding			breast(1)	1		Prostate(19;8.69e-07)				TTTTCGGCTTCGCTTCCACTT	0.562000													27	59					0	0	0	0
CECR2	27443	broad.mit.edu	37	22	17978481	17978481	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:17978481G>A	uc010gqw.1	+	3	445	c.319G>A	c.(319-321)GAA>AAA	p.E107K	CECR2_uc010gqv.1_5'UTR|CECR2_uc002zml.2_5'UTR|CECR2_uc002zmm.1_5'UTR	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	149					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		GCCATTGGGTGAAGACAATTC	0.488000													10	36					0	0	0	0
CECR2	27443	broad.mit.edu	37	22	17978563	17978563	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:17978563G>A	uc010gqw.1	+	3	527	c.401G>A	c.(400-402)GGA>GAA	p.G134E	CECR2_uc010gqv.1_Missense_Mutation_p.G13E|CECR2_uc002zml.2_Missense_Mutation_p.G13E|CECR2_uc002zmm.1_Missense_Mutation_p.G13E	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	176					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		AAATCCAATGGAGAACTCTCT	0.408000													5	9					0	0	0	0
P2RX6	9127	broad.mit.edu	37	22	21377815	21377815	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:21377815C>T	uc010gsu.1	+	8	798	c.798C>T	c.(796-798)ATC>ATT	p.I266I	P2RX6_uc002ztz.2_Silent_p.I240I|P2RX6_uc002zua.2_RNA|P2RX6_uc002zuc.1_RNA	NM_005446	NP_005437	O15547	P2RX6_HUMAN	purinergic receptor P2X6 isoform 1	266	Extracellular (Potential).				muscle contraction|protein homooligomerization	cell junction|cytoplasm|integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|identical protein binding|purinergic nucleotide receptor activity				0						CTGTAGGCATCAGAGTTCACT	0.602000													7	13					0	0	0	0
LOC96610	96610	broad.mit.edu	37	22	23011006	23011006	+	RNA	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:23011006G>T	uc011aim.1	+	121		c.7692G>T								Parts of antibodies, mostly variable regions.												0						CCTATGAGCTGACACAGCCAT	0.562000													27	119					6.00712e-18	6.27141e-18	1	0
C22orf13	83606	broad.mit.edu	37	22	24939877	24939877	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:24939877G>A	uc003aah.2	-	5	877	c.561C>T	c.(559-561)TTC>TTT	p.F187F	C22orf13_uc003aal.2_Silent_p.F243F|C22orf13_uc003aai.3_Silent_p.F144F|C22orf13_uc003aaj.3_Silent_p.F187F|C22orf13_uc003aak.3_Silent_p.F243F	NM_031444	NP_113632	Q96NT3	CV013_HUMAN	chromosome 22 open reading frame 13	187											0						GCAGCACGATGAAGTGGCCCT	0.617000													9	24					0	0	0	0
KCNJ4	3761	broad.mit.edu	37	22	38823412	38823412	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:38823412G>A	uc003avs.1	-	2	823	c.726C>T	c.(724-726)CTC>CTT	p.L242L	KCNJ4_uc003avt.1_Silent_p.L242L	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	242	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					AGCCCACGTTGAGGTCCCGCT	0.622000													9	42					0	0	0	0
KCNJ4	3761	broad.mit.edu	37	22	38823925	38823925	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:38823925G>C	uc003avs.1	-	2	310	c.213C>G	c.(211-213)CTC>CTG	p.L71L	KCNJ4_uc003avt.1_Silent_p.L71L	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	71	Helical; Name=M1; (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					GGCCGAAAAAGAGCCAGGAGA	0.547000													7	14					0	0	0	0
ADSL	158	broad.mit.edu	37	22	40750320	40750320	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:40750320C>G	uc003ayp.3	+	4	530	c.471C>G	c.(469-471)TTC>TTG	p.F157L	ADSL_uc003ays.3_Missense_Mutation_p.F157L|ADSL_uc003ayq.3_Missense_Mutation_p.F157L|ADSL_uc003ayr.3_5'UTR|ADSL_uc003ayt.3_Missense_Mutation_p.F142L	NM_000026	NP_000017	P30566	PUR8_HUMAN	adenylosuccinate lyase isoform a	157					AMP biosynthetic process|protein tetramerization|purine base metabolic process	cytosol	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity|N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity			ovary(1)	1						CATTAGGTTTCACACATTTCC	0.423000													44	143					0	0	0	0
MCHR1	2847	broad.mit.edu	37	22	41075673	41075673	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:41075673C>T	uc003ayz.2	+	1	492	c.224C>T	c.(223-225)TCG>TTG	p.S75L	MCHR1_uc003aza.2_Intron	NM_005297	NP_005288	Q99705	MCHR1_HUMAN	G protein-coupled receptor 24	75	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|feeding behavior|generation of precursor metabolites and energy|inhibition of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane|nonmotile primary cilium	neuropeptide receptor activity				0						CTGGAAGCCTCGCTGCTGCCC	0.677000													40	93					0	0	0	0
ARFGAP3	26286	broad.mit.edu	37	22	43230280	43230280	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:43230280C>T	uc003bdd.2	-	5	665	c.445G>A	c.(445-447)GAA>AAA	p.E149K	ARFGAP3_uc010gzf.2_Missense_Mutation_p.E105K|ARFGAP3_uc011apu.1_Intron	NM_014570	NP_055385	Q9NP61	ARFG3_HUMAN	ADP-ribosylation factor GTPase activating	149					intracellular protein transport|protein secretion|regulation of ARF GTPase activity|vesicle-mediated transport	cytosol|Golgi membrane	ARF GTPase activator activity|protein transporter activity|zinc ion binding			breast(1)	1						AAAAAATCTTCCTCCTTTGGT	0.413000													46	105					0	0	0	0
ALG12	79087	broad.mit.edu	37	22	50298025	50298025	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:50298025G>A	uc003biy.2	-	8	1396	c.1122C>T	c.(1120-1122)GTC>GTT	p.V374V		NM_024105	NP_077010	Q9BV10	ALG12_HUMAN	alpha-1,6-mannosyltransferase ALG12	374					dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	integral to membrane|intrinsic to endoplasmic reticulum membrane					0		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		BRCA - Breast invasive adenocarcinoma(115;0.199)|LUAD - Lung adenocarcinoma(64;0.247)		TCTGCATTGCGACGCCACCTG	0.642000													12	25					0	0	0	0
MOV10L1	54456	broad.mit.edu	37	22	50591518	50591518	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:50591518G>A	uc003bjj.2	+	22	3020	c.2937G>A	c.(2935-2937)CTG>CTA	p.L979L	MOV10L1_uc003bjk.3_Silent_p.L979L|MOV10L1_uc011arp.1_Silent_p.L959L|MOV10L1_uc003bjl.2_Silent_p.L106L|MOV10L1_uc003bjm.1_Silent_p.L22L	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	979					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		AGGCCCTGCTGATGCTGCCCT	0.592000													35	122					0	0	0	0
PLXNB2	23654	broad.mit.edu	37	22	50728135	50728135	+	Silent	SNP	T	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:50728135T>C	uc003bkv.3	-	3	985	c.879A>G	c.(877-879)CTA>CTG	p.L293L		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	293	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		AGACAGCATATAGCACCCTGC	0.682000													21	44					0	0	0	0
CNTN6	27255	broad.mit.edu	37	3	1424826	1424826	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:1424826G>A	uc003boz.2	+	18	2634	c.2367G>A	c.(2365-2367)CTG>CTA	p.L789L	CNTN6_uc011asj.1_Silent_p.L717L|CNTN6_uc003bpa.2_Silent_p.L789L	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	789	Fibronectin type-III 2.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		AAGGATCCCTGAGTACTGTGA	0.418000													12	27					0	0	0	0
BHLHE40	8553	broad.mit.edu	37	3	5022018	5022018	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:5022018G>C	uc003bqf.2	+	3	490	c.183G>C	c.(181-183)GAG>GAC	p.E61D	uc003bqe.1_5'Flank|uc010hce.1_5'Flank|BHLHE40_uc011asw.1_5'UTR	NM_003670	NP_003661	O14503	BHE40_HUMAN	basic helix-loop-helix family, member e40	61	Basic motif.					Golgi apparatus|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGCTCATCGAGAAAAAGAGAC	0.572000											OREG0015367	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	27					0	0	0	0
IQSEC1	9922	broad.mit.edu	37	3	12977636	12977636	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:12977636C>T	uc003bxt.2	-	3	931	c.922G>A	c.(922-924)GAT>AAT	p.D308N	IQSEC1_uc003bxu.3_Missense_Mutation_p.D186N|IQSEC1_uc011auw.1_Missense_Mutation_p.D294N	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	308					regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						TCCTCCTCATCGATGTACAGG	0.697000													32	74					0	0	0	0
SCN10A	6336	broad.mit.edu	37	3	38763895	38763895	+	Missense_Mutation	SNP	G	A	A	rs146965005		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:38763895G>A	uc003ciq.2	-	19	3361	c.3361C>T	c.(3361-3363)CGC>TGC	p.R1121C		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1121					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGACAGTGGCGAATGCATCCT	0.552000													31	128					0	0	0	0
LIMD1	8994	broad.mit.edu	37	3	45636827	45636827	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:45636827G>A	uc003coq.2	+	1	505	c.456G>A	c.(454-456)GAG>GAA	p.E152E		NM_014240	NP_055055	Q9UGP4	LIMD1_HUMAN	LIM domains containing 1	152					cytoplasmic mRNA processing body assembly|gene silencing by miRNA|multicellular organismal development|negative regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasmic mRNA processing body|nucleus|RNA-induced silencing complex	protein binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.011)|KIRC - Kidney renal clear cell carcinoma(197;0.0264)|Kidney(197;0.0315)		GTTCCAGGGAGAGCCTGGCGA	0.612000													20	64					0	0	0	0
LIMD1	8994	broad.mit.edu	37	3	45718438	45718438	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:45718438G>A	uc003coq.2	+	8	1967	c.1918G>A	c.(1918-1920)GAA>AAA	p.E640K		NM_014240	NP_055055	Q9UGP4	LIMD1_HUMAN	LIM domains containing 1	640	LIM zinc-binding 3.|Necessary for nuclear localization.				cytoplasmic mRNA processing body assembly|gene silencing by miRNA|multicellular organismal development|negative regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasmic mRNA processing body|nucleus|RNA-induced silencing complex	protein binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.011)|KIRC - Kidney renal clear cell carcinoma(197;0.0264)|Kidney(197;0.0315)		GCTCAATGATGAAGATGGCCA	0.557000													43	148					0	0	0	0
CCR3	1232	broad.mit.edu	37	3	46307271	46307271	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:46307271C>T	uc003cpg.1	+	4	1165	c.622C>T	c.(622-624)CTC>TTC	p.L208F	CCR3_uc003cpi.1_Missense_Mutation_p.L208F|CCR3_uc003cpj.1_Missense_Mutation_p.L208F|CCR3_uc003cpk.1_Missense_Mutation_p.L229F|CCR3_uc010hjb.1_Missense_Mutation_p.L226F|CCR3_uc003cpl.1_Missense_Mutation_p.L241F	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	208	Helical; Name=5; (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		CATCTTCTGTCTCGTTCTCCC	0.468000													10	43					0	0	0	0
SEMA3F	6405	broad.mit.edu	37	3	50211682	50211682	+	Missense_Mutation	SNP	G	A	A	rs149131307		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:50211682G>A	uc003cyj.2	+	5	553	c.355G>A	c.(355-357)GTC>ATC	p.V119I	SEMA3F_uc003cyk.2_Missense_Mutation_p.V119I	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	119	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		TGGGAACTTCGTCAGGCTCAT	0.642000													18	50					0	0	0	0
MAPKAPK3	7867	broad.mit.edu	37	3	50655186	50655186	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:50655186C>G	uc003day.1	+	4	786	c.190C>G	c.(190-192)CGG>GGG	p.R64G	MAPKAPK3_uc003daz.1_Missense_Mutation_p.R64G|MAPKAPK3_uc003dba.1_Missense_Mutation_p.R64G|MAPKAPK3_uc010hlr.1_Missense_Mutation_p.R64G	NM_004635	NP_004626	Q16644	MAPK3_HUMAN	mitogen-activated protein kinase-activated	64	Protein kinase.				activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.0188)|Kidney(197;0.0223)		GTGCTTCCATCGGCGCACTGG	0.602000													33	79					0	0	0	0
C3orf63	23272	broad.mit.edu	37	3	56681004	56681004	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:56681004G>A	uc003did.3	-	14	1862	c.1761C>T	c.(1759-1761)TTC>TTT	p.F587F	C3orf63_uc003dic.3_Silent_p.F191F|C3orf63_uc003die.3_Silent_p.F587F	NM_015224	NP_056039	Q9UK61	CC063_HUMAN	retinoblastoma-associated protein 140 isoform b	587										ovary(3)|kidney(1)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.0126)|Kidney(284;0.0147)		CTGAGTATAAGAATTTTTTAT	0.308000													6	14					0	0	0	0
CADPS	8618	broad.mit.edu	37	3	62636530	62636530	+	Missense_Mutation	SNP	A	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:62636530A>G	uc003dll.2	-	5	1555	c.1195T>C	c.(1195-1197)TCA>CCA	p.S399P	CADPS_uc003dlm.2_Missense_Mutation_p.S399P|CADPS_uc003dln.2_Missense_Mutation_p.S399P	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	399					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		ACCTCCAATGAGAAAGACAGC	0.488000													11	32					0	0	0	0
SUCLG2	8801	broad.mit.edu	37	3	67451196	67451196	+	Missense_Mutation	SNP	C	T	T	rs12492080		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:67451196C>T	uc003dna.3	-	10	1170	c.1142G>A	c.(1141-1143)CGG>CAG	p.R381Q	SUCLG2_uc010hob.2_Missense_Mutation_p.R128Q	NM_003848	NP_003839	Q96I99	SUCB2_HUMAN	succinate-CoA ligase, GDP-forming beta subunit	381					succinyl-CoA metabolic process|tricarboxylic acid cycle	mitochondrial matrix	ATP binding|GTP binding|succinate-CoA ligase (GDP-forming) activity			central_nervous_system(1)|skin(1)	2		Renal(2;0.00294)|Lung NSC(201;0.012)|Hepatocellular(537;0.121)		BRCA - Breast invasive adenocarcinoma(55;3.53e-05)|Epithelial(33;0.000153)	Succinic acid(DB00139)	TTCTAGCTCCCGGCAGGCTTT	0.502000													24	71					0	0	0	0
MITF	4286	broad.mit.edu	37	3	70005647	70005647	+	Missense_Mutation	SNP	G	C	C	rs147682682		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:70005647G>C	uc003dnz.2	+	8	1095	c.979G>C	c.(979-981)GAA>CAA	p.E327Q	MITF_uc011bgb.1_Missense_Mutation_p.E275Q|MITF_uc003doa.2_Missense_Mutation_p.E326Q|MITF_uc003dob.2_Missense_Mutation_p.E311Q|MITF_uc003dod.2_Missense_Mutation_p.E302Q|MITF_uc003doe.2_Missense_Mutation_p.E220Q|MITF_uc003dof.2_Missense_Mutation_p.E226Q	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	333	Helix-loop-helix motif.				melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		CCGCATTAAAGAACTAGGTAC	0.363000			A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						11	26					0	0	0	0
ROBO2	6092	broad.mit.edu	37	3	77089919	77089919	+	Translation_Start_Site	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:77089919C>G	uc003dpy.3	+	1	626	c.-17C>G	c.(-19--15)ATCCT>ATGCT		ROBO2_uc003dpz.2_Translation_Start_Site|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Translation_Start_Site	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2						apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		GAATCTGGATCCTTTTTAATA	0.333000													22	45					0	0	0	0
CRYBG3	131544	broad.mit.edu	37	3	97596632	97596632	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:97596632G>C	uc003drx.2	+	1	814	c.750G>C	c.(748-750)GTG>GTC	p.V250V		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						ATTCATATGTGATGCCAAATG	0.443000													7	18					0	0	0	0
OR5H1	26341	broad.mit.edu	37	3	97852279	97852279	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:97852279C>G	uc011bgt.1	+	1	738	c.738C>G	c.(736-738)TTC>TTG	p.F246L		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CCCATCTCTTCTCTGTCTCTT	0.413000													19	34					0	0	0	0
OR5H6	79295	broad.mit.edu	37	3	97983603	97983603	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:97983603C>G	uc003dsi.1	+	1	475	c.475C>G	c.(475-477)CAG>GAG	p.Q159E		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						ACTATGCATTCAGCTATTAGT	0.353000													19	56					0	0	0	0
CEP97	79598	broad.mit.edu	37	3	101443560	101443560	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:101443560G>C	uc003dvk.1	+	1	67	c.40G>C	c.(40-42)GAA>CAA	p.E14Q	CEP97_uc010hpm.1_Missense_Mutation_p.E14Q|CEP97_uc011bhf.1_Missense_Mutation_p.E14Q|CEP97_uc003dvl.1_5'Flank	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	14						centrosome|nucleus	protein binding			ovary(2)	2						GCCTCCCGGAGAAGGTAAGGC	0.532000													13	28					0	0	0	0
MYH15	22989	broad.mit.edu	37	3	108112937	108112937	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:108112937C>T	uc003dxa.1	-	37	5317	c.5260G>A	c.(5260-5262)GAA>AAA	p.E1754K		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1754	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						ACCACCTCTTCAGCTTCTTTC	0.498000													25	96					0	0	0	0
CCDC80	151887	broad.mit.edu	37	3	112326071	112326071	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:112326071C>G	uc003dzf.2	-	7	2676	c.2458G>C	c.(2458-2460)GGC>CGC	p.G820R	CCDC80_uc011bhv.1_Intron|CCDC80_uc003dzg.2_Missense_Mutation_p.G820R|CCDC80_uc003dzh.1_Missense_Mutation_p.G820R	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	820										ovary(2)	2						TCTCCAACGCCTAAAAGCTTC	0.378000													27	44					0	0	0	0
WDR52	55779	broad.mit.edu	37	3	113099899	113099899	+	Missense_Mutation	SNP	A	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:113099899A>C	uc003eae.1	-	16	1945	c.1899T>G	c.(1897-1899)AGT>AGG	p.S633R		NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	633										central_nervous_system(1)	1						TTAGTAAAGTACTTTCAGGCT	0.269000													20	14					0	0	0	0
NAA50	80218	broad.mit.edu	37	3	113440619	113440619	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:113440619C>T	uc003ean.1	-	5	798	c.498G>A	c.(496-498)AAG>AAA	p.K166K	NAA50_uc010hqm.1_Silent_p.K92K|NAA50_uc011bij.1_Silent_p.K92K	NM_025146	NP_079422	Q9GZZ1	NAA50_HUMAN	N-acetyltransferase 13	166					N-terminal protein amino acid acetylation	cytoplasm	N-acetyltransferase activity|protein binding				0						AGTTGTCTGTCTTTTGCACAT	0.428000													41	72					0	0	0	0
ZDHHC23	254887	broad.mit.edu	37	3	113667698	113667698	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:113667698G>A	uc003eau.2	+	2	348	c.49G>A	c.(49-51)GAA>AAA	p.E17K	ZDHHC23_uc003eav.2_Missense_Mutation_p.E11K	NM_173570	NP_775841	Q8IYP9	ZDH23_HUMAN	zinc finger, DHHC domain containing 23	17						integral to membrane	acyltransferase activity|zinc ion binding			ovary(2)	2						GAAAACCGAAGAACCTGAATT	0.478000													14	62					0	0	0	0
MIR568	693153	broad.mit.edu	37	3	114035447	114035447	+	5'Flank	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:114035447C>G	hsa-mir-568|MI0003574	-						uc003ebh.1_RNA																	0						GAACTGGGTTCAGACACTAGC	0.284000													80	108					0	0	0	0
LSAMP	4045	broad.mit.edu	37	3	115571361	115571361	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:115571361C>T	uc003ebt.2	-	4	1118	c.618G>A	c.(616-618)GCG>GCA	p.A206A	LSAMP_uc011bis.1_Silent_p.A206A	NM_002338	NP_002329	Q13449	LSAMP_HUMAN	limbic system-associated membrane protein	206	Ig-like C2-type 2.				cell adhesion|nervous system development	anchored to membrane|plasma membrane					0		all_cancers(1;0.00189)|all_epithelial(1;0.0366)|Myeloproliferative disorder(1037;0.17)|all_neural(597;0.208)|Lung NSC(201;0.215)		GBM - Glioblastoma multiforme(114;0.00117)|LUSC - Lung squamous cell carcinoma(41;0.0407)|Lung(219;0.152)		GTTTGACATCCGCCGAGGAGA	0.532000													18	66					0	0	0	0
CD80	941	broad.mit.edu	37	3	119256113	119256113	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:119256113G>C	uc003ecq.2	-	4	966	c.571C>G	c.(571-573)CAA>GAA	p.Q191E	CD80_uc010hqt.1_Missense_Mutation_p.Q191E|CD80_uc010hqu.1_Intron	NM_005191	NP_005182	P33681	CD80_HUMAN	CD80 antigen precursor	191	Extracellular (Potential).|Ig-like C2-type.				interspecies interaction between organisms|intracellular signal transduction|positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process|positive regulation of interleukin-2 biosynthetic process|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of signal transduction|positive regulation of T-helper 1 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation	intracellular	coreceptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2					Abatacept(DB01281)	TCAGGATCTTGGGAAACTGTT	0.418000													49	84					0	0	0	0
C3orf15	89876	broad.mit.edu	37	3	119422063	119422063	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:119422063C>T	uc010hqx.1	+	1	195	c.118C>T	c.(118-120)CTG>TTG	p.L40L	C3orf15_uc003edc.2_Silent_p.L40L|C3orf15_uc010hqy.1_Silent_p.L40L|C3orf15_uc003ede.3_Silent_p.L40L|C3orf15_uc010hqz.2_Silent_p.F3F|C3orf15_uc011bjd.1_5'UTR|C3orf15_uc011bje.1_Silent_p.F3F|C3orf15_uc010hra.1_5'Flank			Q7Z4T9	AAT1_HUMAN	RecName: Full=AMY-1-associating protein expressed in testis 1;          Short=AAT-1;	40						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		GTATGATTTTCTGTACGGTAA	0.652000													9	26					0	0	0	0
HCLS1	3059	broad.mit.edu	37	3	121353058	121353058	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:121353058G>A	uc003eeh.3	-	10	1024	c.899C>T	c.(898-900)TCA>TTA	p.S300L	HCLS1_uc011bjj.1_Missense_Mutation_p.S263L|HCLS1_uc011bjk.1_RNA	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	300					erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		GCTCACCTCTGAGGAGATTTT	0.567000													17	92					0	0	0	0
PDIA5	10954	broad.mit.edu	37	3	122842957	122842957	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:122842957C>G	uc003egc.1	+	9	710	c.654C>G	c.(652-654)ATC>ATG	p.I218M	PDIA5_uc003egd.1_RNA	NM_006810	NP_006801	Q14554	PDIA5_HUMAN	protein disulfide isomerase A5 precursor	218	Thioredoxin 1.				cell redox homeostasis|glycerol ether metabolic process|protein folding|response to stress	endoplasmic reticulum lumen	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.0427)		TTGAAAACATCAAGGAGGAGT	0.557000													36	49					0	0	0	0
DNAJC13	23317	broad.mit.edu	37	3	132222058	132222058	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:132222058G>A	uc003eor.2	+	41	4782	c.4717G>A	c.(4717-4719)GAG>AAG	p.E1573K		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	1573							heat shock protein binding			ovary(1)|breast(1)	2						TTTATAACAGGAGGTAGCAAA	0.363000													9	36					0	0	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133667438	133667438	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:133667438G>C	uc003eqa.3	-	8	1321	c.1047C>G	c.(1045-1047)CTC>CTG	p.L349L	SLCO2A1_uc003eqb.3_Silent_p.L273L|SLCO2A1_uc011blv.1_Silent_p.L168L	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	349	Extracellular (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						GGAACTTGTTGAGGAAGGTGG	0.577000													76	165					0	0	0	0
PPP2R3A	5523	broad.mit.edu	37	3	135720853	135720853	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:135720853C>T	uc003eqv.1	+	2	1078	c.513C>T	c.(511-513)GCC>GCT	p.A171A	PPP2R3A_uc011blz.1_Intron	NM_002718	NP_002709	Q06190	P2R3A_HUMAN	protein phosphatase 2, regulatory subunit B'',	171					protein dephosphorylation	protein phosphatase type 2A complex	calcium ion binding|protein binding|protein phosphatase type 2A regulator activity			ovary(3)|pancreas(1)|lung(1)|breast(1)|skin(1)	7						ATGGGAACGCCCCATCCTTTG	0.423000													17	41					0	0	0	0
PPP2R3A	5523	broad.mit.edu	37	3	135745863	135745863	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:135745863C>G	uc003eqv.1	+	3	2750	c.2185C>G	c.(2185-2187)CTA>GTA	p.L729V	PPP2R3A_uc011blz.1_5'UTR|PPP2R3A_uc003eqw.1_Missense_Mutation_p.L108V|PPP2R3A_uc011bma.1_RNA	NM_002718	NP_002709	Q06190	P2R3A_HUMAN	protein phosphatase 2, regulatory subunit B'',	729					protein dephosphorylation	protein phosphatase type 2A complex	calcium ion binding|protein binding|protein phosphatase type 2A regulator activity			ovary(3)|pancreas(1)|lung(1)|breast(1)|skin(1)	7						TGAACAAACTCTAAGCAGAAT	0.363000													15	43					0	0	0	0
MSL2	55167	broad.mit.edu	37	3	135870601	135870601	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:135870601C>T	uc003eqx.1	-	2	1855	c.1122G>A	c.(1120-1122)GTG>GTA	p.V374V	MSL2_uc011bmb.1_Silent_p.V300V	NM_018133	NP_060603	Q9HCI7	MSL2_HUMAN	ring finger protein 184 isoform 1	374					histone H4-K16 acetylation	MSL complex	zinc ion binding			central_nervous_system(1)	1						TCTCCCGTTTCACTGTCACAG	0.443000													21	51					0	0	0	0
ZBTB38	253461	broad.mit.edu	37	3	141163753	141163753	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:141163753G>A	uc003etw.2	+	8	3505	c.2523G>A	c.(2521-2523)GTG>GTA	p.V841V	ZBTB38_uc010hun.2_Silent_p.V838V|ZBTB38_uc010huo.2_Silent_p.V841V|ZBTB38_uc003ety.2_Silent_p.V841V|ZBTB38_uc010hup.2_Silent_p.V842V	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	841					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						AAATAACAGTGAAAATTGGAA	0.413000													9	43					0	0	0	0
RASA2	5922	broad.mit.edu	37	3	141205979	141205979	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:141205979G>C	uc003etz.1	+	1	54	c.54G>C	c.(52-54)GCG>GCC	p.A18A	RASA2_uc010huq.1_Silent_p.A18A|RASA2_uc003eua.1_Silent_p.A18A	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	18	Ala-rich.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						cgccagcggcgAGTGCGACTG	0.348000													2	5					0	0	0	0
TRPC1	7220	broad.mit.edu	37	3	142467159	142467159	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:142467159C>T	uc003evc.2	+	4	625	c.489C>T	c.(487-489)GTC>GTT	p.V163V	TRPC1_uc003evb.2_Silent_p.V129V	NM_003304	NP_003295	P48995	TRPC1_HUMAN	transient receptor potential cation channel,	163	Cytoplasmic (Potential).|ANK 4.				axon guidance|cytosolic calcium ion homeostasis|positive regulation of release of sequestered calcium ion into cytosol|response to calcium ion	cytosol|integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TTGCACCTGTCATTTTAGCTG	0.353000													34	124					0	0	0	0
HLTF	6596	broad.mit.edu	37	3	148757389	148757389	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:148757389G>C	uc003ewq.1	-	22	2812	c.2594C>G	c.(2593-2595)TCT>TGT	p.S865C	HLTF_uc003ewr.1_Missense_Mutation_p.S865C|HLTF_uc003ews.1_Missense_Mutation_p.S864C|HLTF_uc010hve.1_Missense_Mutation_p.S864C	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	865	Helicase C-terminal.				chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			TTCTATTAAAGACAGGAATGT	0.299000													11	27					0	0	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906079	164906079	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:164906079G>A	uc003fej.3	-	2	2984	c.2540C>T	c.(2539-2541)TCA>TTA	p.S847L	SLITRK3_uc003fek.2_Missense_Mutation_p.S847L	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	847	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						AACTACTCCTGAAACCCCACC	0.572000										HNSCC(40;0.11)			71	156					0	0	0	0
NCEH1	57552	broad.mit.edu	37	3	172351349	172351349	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:172351349C>G	uc011bpx.1	-	5	1401	c.1263G>C	c.(1261-1263)ATG>ATC	p.M421I	NCEH1_uc003fig.2_Missense_Mutation_p.M413I|NCEH1_uc011bpw.1_Missense_Mutation_p.M248I|NCEH1_uc011bpy.1_Missense_Mutation_p.M248I	NM_001146276	NP_001139748	Q6PIU2	NCEH1_HUMAN	arylacetamide deacetylase-like 1 isoform a	381	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum|integral to membrane|microsome	carboxylesterase activity				0						TAGTGAAAATCATACATCCGT	0.483000													23	70					0	0	0	0
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	545	PI3K helical.		E -> G (in KERSEB).|E -> A (in cancer).|E -> K (in KERSEB; shows an increase in lipid kinase activity; oncogenic in vivo; occurs in the interface between the PI3K helical domain and the nSH2 (N-terminal SH2) region of the p85 regulatory subunit and may reduce the inhibitory effect of p85; requires interaction with RAS to induce cellular transformation; enhances invadopodia-mediated extracellular matrix degradation and invasion in breast cancer cells).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E545K(735)|p.E545A(75)|p.E545G(55)|p.E545?(19)|p.E545D(15)|p.E545Q(12)|p.E545V(4)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TGAAATCACTGAGCAGGAGAA	0.353000	E545K(RERFLCSQ1_LUNG)|E545K(KYSE510_OESOPHAGUS)|E545K(NCIH508_LARGE_INTESTINE)|E545K(HCC202_BREAST)|E545K(BFTC909_KIDNEY)|E545K(HCT15_LARGE_INTESTINE)|E545K(NCIH596_LUNG)|E545K(L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|E545K(DLD1_LARGE_INTESTINE)|E545K(ESS1_ENDOMETRIUM)|E545K(MDAMB361_BREAST)|E545K(MKN1_STOMACH)|E545K(MCF7_BREAST)|E545K(NCIH460_LUNG)|E545K(TCCSUP_URINARY_TRACT)|E545K(HSC4_UPPER_AERODIGESTIVE_TRACT)|E545K(BC3C_URINARY_TRACT)|E545K(HUH28_BILIARY_TRACT)|E545K(HT1197_URINARY_TRACT)|E545K(TE5_OESOPHAGUS)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			19	33					0	0	0	0
MFN1	55669	broad.mit.edu	37	3	179085838	179085838	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:179085838G>A	uc003fjs.2	+	9	1048	c.922G>A	c.(922-924)GAA>AAA	p.E308K	MFN1_uc010hxb.2_RNA|MFN1_uc003fjt.2_Missense_Mutation_p.E336K|MFN1_uc010hxc.2_Missense_Mutation_p.E161K	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1	308	Cytoplasmic (Potential).				mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			GGCACTTGCTGAAGGATTTCA	0.323000													10	46					0	0	0	0
PEX5L	51555	broad.mit.edu	37	3	179593236	179593236	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:179593236C>G	uc003fki.1	-	6	665	c.535G>C	c.(535-537)GAT>CAT	p.D179H	PEX5L_uc011bqd.1_Missense_Mutation_p.D136H|PEX5L_uc011bqe.1_5'UTR|PEX5L_uc011bqf.1_Missense_Mutation_p.D71H|PEX5L_uc003fkj.1_Missense_Mutation_p.D144H|PEX5L_uc010hxd.1_Missense_Mutation_p.D177H|PEX5L_uc011bqg.1_Missense_Mutation_p.D155H|PEX5L_uc011bqh.1_Missense_Mutation_p.D120H	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	179					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			AACTTAACATCGTCCCATTTT	0.498000													16	45					0	0	0	0
TTC14	151613	broad.mit.edu	37	3	180325500	180325500	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:180325500G>A	uc003fkk.2	+	10	1369	c.1237G>A	c.(1237-1239)GAG>AAG	p.E413K	TTC14_uc003fkl.2_Missense_Mutation_p.E413K|TTC14_uc003fkm.2_Missense_Mutation_p.E413K	NM_133462	NP_597719	Q96N46	TTC14_HUMAN	tetratricopeptide repeat domain 14 isoform a	413	TPR 4.						RNA binding			ovary(1)	1	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			GGCTTTGGATGAGACTTTTAA	0.284000													7	35					0	0	0	0
PSMD2	5708	broad.mit.edu	37	3	184021128	184021128	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:184021128C>G	uc003fnn.1	+	9	1123	c.1090C>G	c.(1090-1092)CAG>GAG	p.Q364E	PSMD2_uc011brj.1_Missense_Mutation_p.Q205E|PSMD2_uc011brk.1_Missense_Mutation_p.Q234E	NM_002808	NP_002799	Q13200	PSMD2_HUMAN	proteasome 26S non-ATPase subunit 2	364					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding				0	all_cancers(143;1.54e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Bortezomib(DB00188)	CAGTGGCTCTCAGGTGGACTC	0.507000													23	129					0	0	0	0
TP63	8626	broad.mit.edu	37	3	189611995	189611995	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:189611995G>C	uc003fry.2	+	14	1836	c.1747G>C	c.(1747-1749)GAT>CAT	p.D583H	TP63_uc003frz.2_Missense_Mutation_p.R551S|TP63_uc010hzc.1_Missense_Mutation_p.R503T|TP63_uc003fsc.2_Missense_Mutation_p.D489H|TP63_uc003fsd.2_Missense_Mutation_p.R457S|TP63_uc010hzd.1_Missense_Mutation_p.D404H	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	583	SAM.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TGTTGCACAGGATCTGGCAAG	0.493000									Hay-Wells_syndrome	HNSCC(45;0.13)			11	53					0	0	0	0
C3orf59	151963	broad.mit.edu	37	3	192517200	192517200	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:192517200G>A	uc011bsp.1	-	2	772	c.451C>T	c.(451-453)CGG>TGG	p.R151W		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	151											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		TCAAAGAGCCGAAGGCTCAGC	0.512000													29	37					0	0	0	0
GP5	2814	broad.mit.edu	37	3	194118045	194118045	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:194118045G>A	uc003ftv.1	-	2	998	c.967C>T	c.(967-969)CTG>TTG	p.L323L		NM_004488	NP_004479	P40197	GPV_HUMAN	glycoprotein V (platelet) precursor	323	Extracellular (Potential).				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane				skin(2)|breast(1)	3	all_cancers(143;6.64e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;7.38e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.06e-05)		CGCGGGCTCAGAGTCACCCCT	0.731000													5	14					0	0	0	0
FYTTD1	84248	broad.mit.edu	37	3	197476886	197476886	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr3:197476886C>T	uc003fyi.2	+	1	263	c.44C>T	c.(43-45)TCT>TTT	p.S15F	KIAA0226_uc003fyd.3_5'Flank|KIAA0226_uc003fyf.2_5'Flank|FYTTD1_uc011bui.1_Intron|FYTTD1_uc011buj.1_RNA|FYTTD1_uc011buk.1_5'Flank	NM_032288	NP_115664	Q96QD9	UIF_HUMAN	forty-two-three domain containing 1 isoform 1	15					mRNA export from nucleus	nuclear speck	mRNA binding|protein binding				0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.175)		ACGGCGACTTCTTCGCCGCCG	0.652000													20	34					0	0	0	0
HTT	3064	broad.mit.edu	37	4	3144492	3144492	+	Splice_Site	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:3144492G>C	uc011bvq.1	+	24	3097	c.2952_splice	c.e24-1	p.R984_splice		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin						establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		TTTGTTATTAGAATATATAGA	0.259000													9	19					0	0	0	0
STK32B	55351	broad.mit.edu	37	4	5461941	5461941	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:5461941G>T	uc003gih.1	+	9	959	c.895G>T	c.(895-897)GGC>TGC	p.G299C	STK32B_uc010ida.1_Missense_Mutation_p.G252C	NM_018401	NP_060871	Q9NY57	ST32B_HUMAN	serine/threonine kinase 32B	299							ATP binding|metal ion binding|protein serine/threonine kinase activity			breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						ACTGATGCCCGGCTTTGTGCC	0.587000											OREG0016061	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	82					4.35082e-09	4.45743e-09	1	0
C4orf6	10141	broad.mit.edu	37	4	5528039	5528039	+	Nonsense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:5528039C>G	uc003gii.2	+	2	438	c.263C>G	c.(262-264)TCA>TGA	p.S88*		NM_005750	NP_005741	Q99440	CD006_HUMAN	chromosome 4 open reading frame 6	88					nervous system development						0						GGTGCTCACTCAACTGCAGTG	0.433000													14	38					0	0	0	0
CRMP1	1400	broad.mit.edu	37	4	5830225	5830225	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:5830225G>C	uc003gip.2	-	13	1553	c.1452C>G	c.(1450-1452)ATC>ATG	p.I484M	EVC_uc003gim.1_Intron|CRMP1_uc003gin.1_Missense_Mutation_p.I396M|CRMP1_uc003giq.2_Missense_Mutation_p.I484M|CRMP1_uc003gir.2_Missense_Mutation_p.I479M|CRMP1_uc003gis.2_Missense_Mutation_p.I598M	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	484					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		CCTTATTCCTGATTTTGACGC	0.572000													13	17					0	0	0	0
MAN2B2	23324	broad.mit.edu	37	4	6619118	6619118	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:6619118G>A	uc003gjf.1	+	17	2749	c.2713G>A	c.(2713-2715)GAA>AAA	p.E905K	MAN2B2_uc003gje.1_Missense_Mutation_p.E905K|MAN2B2_uc011bwf.1_Missense_Mutation_p.E854K	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	905					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						CCATCGAGGGGAAGCCCAGGC	0.582000													13	49					0	0	0	0
KLHL5	51088	broad.mit.edu	37	4	39064535	39064535	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:39064535C>T	uc003gts.2	+	1	476	c.401C>T	c.(400-402)TCT>TTT	p.S134F	KLHL5_uc003gtp.2_Missense_Mutation_p.S88F|KLHL5_uc003gtq.2_Intron|KLHL5_uc003gtr.1_Missense_Mutation_p.S134F|KLHL5_uc003gtt.2_Missense_Mutation_p.S134F	NM_015990	NP_057074	Q96PQ7	KLHL5_HUMAN	kelch-like 5 isoform 1	134						cytoplasm|cytoskeleton	actin binding			ovary(1)	1						GCATCCACCTCTGAAGTCCCT	0.463000													29	72					0	0	0	0
ANKRD17	26057	broad.mit.edu	37	4	73986766	73986766	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:73986766C>G	uc003hgp.2	-	20	3798	c.3681G>C	c.(3679-3681)ATG>ATC	p.M1227I	ANKRD17_uc003hgo.2_Missense_Mutation_p.M1114I|ANKRD17_uc003hgq.2_Missense_Mutation_p.M976I|ANKRD17_uc003hgr.2_Missense_Mutation_p.M1226I|ANKRD17_uc011cbd.1_Missense_Mutation_p.M792I	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	1227	ANK 20.				interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TATGCCCATTCATAGCTGCTA	0.428000													29	68					0	0	0	0
PPEF2	5470	broad.mit.edu	37	4	76812835	76812835	+	Silent	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:76812835G>T	uc003hix.2	-	4	564	c.207C>A	c.(205-207)CTC>CTA	p.L69L	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Silent_p.L69L	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	69					detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			AGTGATCCATGAGATAGCTGA	0.517000													63	193					5.89852e-23	6.19485e-23	1	0
PTPN13	5783	broad.mit.edu	37	4	87655966	87655966	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:87655966G>A	uc003hpz.2	+	14	2569	c.2089G>A	c.(2089-2091)GAG>AAG	p.E697K	PTPN13_uc003hpy.2_Missense_Mutation_p.E697K|PTPN13_uc003hqa.2_Missense_Mutation_p.E697K|PTPN13_uc003hqb.2_Missense_Mutation_p.E697K	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	697	FERM.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		CTGTGATGATGAGACTTCCTT	0.413000													33	85					0	0	0	0
AFF1	4299	broad.mit.edu	37	4	87968316	87968316	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:87968316C>G	uc003hqj.3	+	3	1015	c.608C>G	c.(607-609)TCT>TGT	p.S203C	AFF1_uc011ccx.1_Missense_Mutation_p.S144C|AFF1_uc003hqh.1_Missense_Mutation_p.S210C|AFF1_uc011ccy.1_Missense_Mutation_p.S210C|AFF1_uc011ccz.1_Missense_Mutation_p.S210C|AFF1_uc003hqk.3_Missense_Mutation_p.S203C|AFF1_uc011cda.1_Intron	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	203						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		CCCTTAATCTCTTTGCCTTCC	0.527000													37	103					0	0	0	0
HERC3	8916	broad.mit.edu	37	4	89599159	89599159	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:89599159C>T	uc003hrw.1	+	19	2236	c.2070C>T	c.(2068-2070)CTC>CTT	p.L690L	HERC3_uc011cdn.1_Silent_p.L572L|HERC3_uc011cdo.1_Silent_p.L134L	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	690					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		TCATGCTTCTCACCCTGGAGC	0.527000													14	46					0	0	0	0
ADH4	127	broad.mit.edu	37	4	100052672	100052672	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:100052672C>T	uc003hun.2	-	6	902	c.826G>A	c.(826-828)GGT>AGT	p.G276S	uc003hum.1_Intron|ADH4_uc011ced.1_Missense_Mutation_p.G295S	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	276					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding			skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	TCAGATCCACCTGCACAGTCA	0.388000													14	39					0	0	0	0
CENPE	1062	broad.mit.edu	37	4	104070394	104070394	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:104070394C>T	uc003hxb.1	-	27	3658	c.3568G>A	c.(3568-3570)GAA>AAA	p.E1190K	CENPE_uc003hxc.1_Missense_Mutation_p.E1165K	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1190	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TCATAATTTTCATTAAGTTTC	0.308000													9	35					0	0	0	0
SEC24B	10427	broad.mit.edu	37	4	110459742	110459742	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:110459742C>T	uc003hzk.2	+	23	3737	c.3682C>T	c.(3682-3684)CAC>TAC	p.H1228Y	SEC24B_uc003hzl.2_Missense_Mutation_p.H1193Y|SEC24B_uc011cfp.1_Missense_Mutation_p.H1258Y|SEC24B_uc011cfq.1_Missense_Mutation_p.H1227Y|SEC24B_uc011cfr.1_Missense_Mutation_p.H1192Y	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	1228					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		TCCAATCCTTCACATAGTAAA	0.363000													20	39					0	0	0	0
EGF	1950	broad.mit.edu	37	4	110932483	110932483	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:110932483C>T	uc003hzy.3	+	24	3948	c.3496C>T	c.(3496-3498)CAT>TAT	p.H1166Y	EGF_uc011cfu.1_Missense_Mutation_p.H1124Y|EGF_uc011cfv.1_Missense_Mutation_p.H1125Y|EGF_uc010imk.2_3'UTR	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	1166	Cytoplasmic (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	GCGAAGCTTTCATATGCCCTC	0.552000													22	56					0	0	0	0
PRSS12	8492	broad.mit.edu	37	4	119273873	119273873	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:119273873C>T	uc003ica.1	-	1	50	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	1						membrane	scavenger receptor activity			skin(1)	1						GGGCGAGCGTCATGGTGCCAG	0.672000													8	21					0	0	0	0
FGF2	2247	broad.mit.edu	37	4	123813550	123813550	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:123813550G>A	uc003iev.1	+	3	934	c.866G>A	c.(865-867)TGA>TAA	p.*289*		NM_002006	NP_001997	P09038	FGF2_HUMAN	fibroblast growth factor 2	289					activation of MAPK activity|branching involved in ureteric bud morphogenesis|cell migration involved in sprouting angiogenesis|chemotaxis|chondroblast differentiation|embryonic morphogenesis|fibroblast growth factor receptor signaling pathway|inositol phosphate biosynthetic process|insulin receptor signaling pathway|negative regulation of blood vessel endothelial cell migration|negative regulation of cell death|organ morphogenesis|phosphatidylinositol biosynthetic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of cardiac muscle cell proliferation|positive regulation of cell division|positive regulation of cell fate specification|positive regulation of ERK1 and ERK2 cascade|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of phospholipase C activity|Ras protein signal transduction|release of sequestered calcium ion into cytosol|wound healing	extracellular space	fibroblast growth factor receptor binding|growth factor activity|heparin binding|ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|lung(1)|central_nervous_system(1)	3					Pentosan Polysulfate(DB00686)	GCTAAGAGCTGATTTTAATGG	0.353000													15	68					0	0	0	0
PHF17	79960	broad.mit.edu	37	4	129764189	129764189	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:129764189C>T	uc003igk.2	+	3	414	c.134C>T	c.(133-135)TCA>TTA	p.S45L	PHF17_uc003igj.2_Missense_Mutation_p.S45L|PHF17_uc003igl.2_Missense_Mutation_p.S45L|PHF17_uc011cgy.1_Missense_Mutation_p.S45L|PHF17_uc003igm.2_Missense_Mutation_p.S45L	NM_199320	NP_955352	Q6IE81	JADE1_HUMAN	PHD finger protein 17 long isoform	45					apoptosis|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell growth|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	histone acetyltransferase complex|mitochondrion	protein binding|zinc ion binding				0						CGAAAGCCTTCAGAGGTACTT	0.393000													7	13					0	0	0	0
PHF17	79960	broad.mit.edu	37	4	129770159	129770159	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:129770159C>T	uc003igk.2	+	5	601	c.321C>T	c.(319-321)CTC>CTT	p.L107L	PHF17_uc003igj.2_Silent_p.L107L|PHF17_uc003igl.2_Intron|PHF17_uc011cgy.1_Silent_p.L107L|PHF17_uc003igm.2_Silent_p.L107L	NM_199320	NP_955352	Q6IE81	JADE1_HUMAN	PHD finger protein 17 long isoform	107					apoptosis|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell growth|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	histone acetyltransferase complex|mitochondrion	protein binding|zinc ion binding				0						AGAAATCCCTCATGTTCATCA	0.517000													24	54					0	0	0	0
CCRN4L	25819	broad.mit.edu	37	4	139966178	139966178	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:139966178C>T	uc003ihl.2	+	3	1039	c.846C>T	c.(844-846)ATC>ATT	p.I282I		NM_012118	NP_036250	Q9UK39	NOCT_HUMAN	CCR4 carbon catabolite repression 4-like	282					rhythmic process|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1	all_hematologic(180;0.162)					AGTTCTGCATCGCTGTTACCC	0.532000													18	50					0	0	0	0
TDO2	6999	broad.mit.edu	37	4	156841121	156841121	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:156841121C>T	uc003ipf.1	+	12	1264	c.1200C>T	c.(1198-1200)TTC>TTT	p.F400F		NM_005651	NP_005642	P48775	T23O_HUMAN	tryptophan 2,3-dioxygenase	400					tryptophan catabolic process to kynurenine	cytosol	tryptophan 2,3-dioxygenase activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		KIRC - Kidney renal clear cell carcinoma(143;0.0455)|Kidney(143;0.0568)|COAD - Colon adenocarcinoma(41;0.141)	L-Tryptophan(DB00150)	GCTCCTACTTCAGCAGTGATG	0.348000													13	35					0	0	0	0
ENPP6	133121	broad.mit.edu	37	4	185012401	185012401	+	Missense_Mutation	SNP	C	T	T	rs148434007	byFrequency	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:185012401C>T	uc003iwc.2	-	8	1394	c.1252G>A	c.(1252-1254)GCC>ACC	p.A418T		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	418	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		GCAGTGCTGGCGCGGCCCTTC	0.562000													17	93					0	0	0	0
SORBS2	8470	broad.mit.edu	37	4	186536298	186536298	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:186536298C>T	uc003iyl.2	-	16	3513	c.2655G>A	c.(2653-2655)AAG>AAA	p.K885K	SORBS2_uc003iyh.2_Silent_p.K609K|SORBS2_uc011ckw.1_Silent_p.K446K|SORBS2_uc003iyi.2_Silent_p.K516K|SORBS2_uc011ckx.1_Silent_p.K451K|SORBS2_uc003iyk.2_Silent_p.K429K|SORBS2_uc003iym.2_Silent_p.K985K|SORBS2_uc003iyn.1_Silent_p.K476K|SORBS2_uc011cku.1_Silent_p.K277K|SORBS2_uc011ckv.1_Silent_p.K789K|SORBS2_uc003iyd.2_Silent_p.K584K|SORBS2_uc003iye.2_Silent_p.K458K|SORBS2_uc003iya.2_Silent_p.K405K|SORBS2_uc003iyb.2_Silent_p.K358K|SORBS2_uc003iyc.2_Silent_p.K338K|SORBS2_uc003iyg.2_Silent_p.K999K|SORBS2_uc003iyf.2_Silent_p.K421K|SORBS2_uc003iyo.1_Silent_p.K334K	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	885	SH3 1.					actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		TATCTCCTTTCTTAAATGACA	0.433000													11	32					0	0	0	0
FAT1	2195	broad.mit.edu	37	4	187630533	187630533	+	Nonsense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:187630533G>C	uc003izf.2	-	2	637	c.449C>G	c.(448-450)TCA>TGA	p.S150*	FAT1_uc010iso.1_Nonsense_Mutation_p.S150*	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	150	Extracellular (Potential).|Cadherin 2.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TGAGGTGGGTGAGAATAACGG	0.463000										HNSCC(5;0.00058)			45	79					0	0	0	0
CCT5	22948	broad.mit.edu	37	5	10264799	10264799	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:10264799G>C	uc003jeq.2	+	11	1701	c.1530G>C	c.(1528-1530)TTG>TTC	p.L510F	CCT5_uc003jer.2_3'UTR|CCT5_uc010its.2_3'UTR|CCT5_uc011cmr.1_Missense_Mutation_p.L455F|CCT5_uc011cms.1_Missense_Mutation_p.L472F|CCT5_uc011cmt.1_Missense_Mutation_p.L417F	NM_012073	NP_036205	P48643	TCPE_HUMAN	chaperonin containing TCP1, subunit 5 (epsilon)	510					'de novo' posttranslational protein folding|response to virus	microtubule organizing center|nucleolus	ATP binding|unfolded protein binding			ovary(2)	2						TAGAAACCTTGATTGGCAAAA	0.338000													16	57					0	0	0	0
C5orf22	55322	broad.mit.edu	37	5	31535864	31535864	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:31535864G>C	uc003jhj.3	+	3	368	c.241G>C	c.(241-243)GAA>CAA	p.E81Q	C5orf22_uc011cnw.1_RNA|C5orf22_uc003jhk.3_5'UTR	NM_018356	NP_060826	Q49AR2	CE022_HUMAN	hypothetical protein LOC55322	81										ovary(2)	2						ATTAAGTATTGAAAATTGGAT	0.343000													12	13					0	0	0	0
MTMR12	54545	broad.mit.edu	37	5	32312866	32312866	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:32312866C>T	uc003jhq.2	-	1	249	c.79G>A	c.(79-81)GAG>AAG	p.E27K	MTMR12_uc010iuk.2_Missense_Mutation_p.E27K|MTMR12_uc010iul.2_Missense_Mutation_p.E27K	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	27						cytoplasm	phosphatase activity			ovary(1)	1						ccccTCACCTCAGGGCGTACG	0.502000													8	33					0	0	0	0
NIPBL	25836	broad.mit.edu	37	5	36985872	36985872	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:36985872G>A	uc003jkl.3	+	10	3089	c.2590G>A	c.(2590-2592)GAT>AAT	p.D864N	NIPBL_uc003jkk.3_Missense_Mutation_p.D864N|NIPBL_uc003jkm.1_Missense_Mutation_p.D743N	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	864					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			TTCAAAAACTGATAAACTAGA	0.423000													7	16					0	0	0	0
OSMR	9180	broad.mit.edu	37	5	38933203	38933203	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:38933203C>T	uc003jln.1	+	18	2964	c.2597C>T	c.(2596-2598)TCT>TTT	p.S866F	OSMR_uc011cpj.1_Missense_Mutation_p.S70F	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	866	Cytoplasmic (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					CAGGCAGCTTCTGACTCTGGC	0.463000													39	89					0	0	0	0
TTC33	23548	broad.mit.edu	37	5	40716372	40716372	+	Missense_Mutation	SNP	C	G	G	rs141546911		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:40716372C>G	uc003jma.2	-	5	812	c.664G>C	c.(664-666)GAG>CAG	p.E222Q	TTC33_uc011cpm.1_Missense_Mutation_p.E114Q|TTC33_uc010ivg.2_3'UTR	NM_012382	NP_036514	Q6PID6	TTC33_HUMAN	tetratricopeptide repeat domain 33	222							binding			ovary(1)	1						ACTGTCTTCTCTTTCTCAGCA	0.423000													14	50					0	0	0	0
NNT	23530	broad.mit.edu	37	5	43656905	43656905	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:43656905C>G	uc003joe.2	+	16	2699	c.2444C>G	c.(2443-2445)TCT>TGT	p.S815C	NNT_uc003jof.2_Missense_Mutation_p.S815C	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	815	Helical; (Potential).				tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	TCTGCTCTCTCTGCTGTCATG	0.423000													24	53					0	0	0	0
DHX29	54505	broad.mit.edu	37	5	54558484	54558484	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:54558484G>C	uc003jpx.2	-	24	3922	c.3802C>G	c.(3802-3804)CAT>GAT	p.H1268D	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	1268							ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				AGCCATCCATGAGTTTGCAAA	0.423000													28	84					0	0	0	0
PIK3R1	5295	broad.mit.edu	37	5	67589627	67589627	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:67589627G>A	uc003jva.2	+	11	1950	c.1390G>A	c.(1390-1392)GAT>AAT	p.D464N	PIK3R1_uc003jvb.2_Missense_Mutation_p.D464N|PIK3R1_uc003jvc.2_Missense_Mutation_p.D164N|PIK3R1_uc003jvd.2_Missense_Mutation_p.D194N|PIK3R1_uc003jve.2_Missense_Mutation_p.D143N|PIK3R1_uc011crb.1_Missense_Mutation_p.D134N	NM_181523	NP_852664	P27986	P85A_HUMAN	phosphoinositide-3-kinase, regulatory subunit 1	464					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|T cell costimulation|T cell receptor signaling pathway	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.D434_Q475del(2)|p.D464fs*2(1)|p.?(1)|p.D464H(1)|p.Y463_L466del(1)|p.T454_D464del(1)		endometrium(34)|central_nervous_system(27)|large_intestine(20)|breast(7)|ovary(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|urinary_tract(1)|skin(1)|pancreas(1)	101		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	TCGAGAATATGATAGATTATA	0.294000			Mis|F|O		gliobastoma|ovarian|colorectal					TCGA GBM(4;<1E-08)			10	27					0	0	0	0
CCNB1	891	broad.mit.edu	37	5	68470931	68470931	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:68470931G>C	uc003jvm.2	+	6	1110	c.933G>C	c.(931-933)AAG>AAC	p.K311N	CCNB1_uc011crd.1_Missense_Mutation_p.K311N|CCNB1_uc010ixb.2_Missense_Mutation_p.K311N	NM_031966	NP_114172	P14635	CCNB1_HUMAN	cyclin B1	311					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitotic cell cycle spindle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|mitotic spindle stabilization|positive regulation of attachment of spindle microtubules to kinetochore|positive regulation of mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	condensed nuclear chromosome outer kinetochore|cytosol|microtubule organizing center|nucleoplasm|spindle pole					0		Lung NSC(167;5.51e-05)|Prostate(74;0.00634)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.24e-56)|Epithelial(20;1.12e-52)|all cancers(19;2.63e-48)|Lung(70;0.0177)		GAGCATCTAAGATTGGAGAGG	0.453000													25	50					0	0	0	0
TMEM161B	153396	broad.mit.edu	37	5	87492275	87492275	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:87492275G>A	uc003kjc.2	-	12	1342	c.1217C>T	c.(1216-1218)TCT>TTT	p.S406F	TMEM161B_uc011cty.1_Missense_Mutation_p.S395F|TMEM161B_uc010jax.2_RNA|TMEM161B_uc011ctx.1_Missense_Mutation_p.S197F	NM_153354	NP_699185	Q8NDZ6	T161B_HUMAN	transmembrane protein 161B	406						integral to membrane				skin(2)	2		all_cancers(142;0.000275)|Lung NSC(167;0.00901)|all_lung(232;0.0111)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;6.24e-36)|Epithelial(54;6.8e-31)|all cancers(79;1.07e-26)		GGTAGAGATAGATTCTGGATA	0.318000													10	38					0	0	0	0
GPR98	84059	broad.mit.edu	37	5	90012484	90012484	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:90012484G>A	uc003kju.2	+	43	9481	c.9385G>A	c.(9385-9387)GAA>AAA	p.E3129K	GPR98_uc003kjt.2_Missense_Mutation_p.E835K|GPR98_uc003kjv.2_Missense_Mutation_p.E729K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3129	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTCCTCAAATGAATCTAAAGA	0.383000													7	23					0	0	0	0
C5orf36	285600	broad.mit.edu	37	5	93856022	93856022	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:93856022C>T	uc011cuk.1	-	5	1158	c.901G>A	c.(901-903)GAA>AAA	p.E301K	C5orf36_uc003kkp.2_Missense_Mutation_p.E301K	NM_001145678	NP_001139150	Q8IV33	K0825_HUMAN	hypothetical protein LOC285600 isoform 1	301											0		all_cancers(142;2.12e-08)|all_epithelial(76;5.95e-11)|all_lung(232;0.000996)|Lung NSC(167;0.0108)|Ovarian(174;0.0218)|Colorectal(57;0.0329)|Breast(839;0.214)|Lung SC(612;0.236)		all cancers(79;3.96e-19)		ACAGCATTTTCTCTGAACTGC	0.363000													17	38					0	0	0	0
SPATA9	83890	broad.mit.edu	37	5	94994347	94994347	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:94994347C>T	uc003klj.1	-	5	901	c.745G>A	c.(745-747)GAA>AAA	p.E249K	SPATA9_uc010jbh.1_Intron|SPATA9_uc003klh.1_RNA|SPATA9_uc003kli.1_RNA	NM_031952	NP_114158	Q9BWV2	SPAT9_HUMAN	spermatogenesis associated 9	249					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane					0		all_cancers(142;1.28e-06)|all_epithelial(76;1.55e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)|Colorectal(57;0.0846)|Breast(839;0.198)		all cancers(79;8.91e-16)		TCATTCATTTCAGCTGATTGG	0.363000													12	23					0	0	0	0
RIOK2	55781	broad.mit.edu	37	5	96518855	96518855	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:96518855C>T	uc003kmz.2	-	1	151	c.41G>A	c.(40-42)CGA>CAA	p.R14Q	RIOK2_uc003kna.3_Missense_Mutation_p.R14Q	NM_018343	NP_060813	Q9BVS4	RIOK2_HUMAN	RIO kinase 2 isoform 1	14							ATP binding|protein serine/threonine kinase activity			kidney(1)	1		all_cancers(142;0.000125)|all_epithelial(76;8.48e-07)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0676)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0657)		GAAGTCATCTCGGCTCATGTA	0.562000													56	191					0	0	0	0
DCP2	167227	broad.mit.edu	37	5	112343710	112343710	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:112343710C>T	uc003kqh.2	+	9	1216	c.1018C>T	c.(1018-1020)CAG>TAG	p.Q340*	DCP2_uc011cwa.1_Nonsense_Mutation_p.Q129*|DCP2_uc010jcc.2_Intron	NM_152624	NP_689837	Q8IU60	DCP2_HUMAN	DCP2 decapping enzyme	340					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus|RNA-induced silencing complex	exoribonuclease activity, producing 5'-phosphomonoesters|manganese ion binding|protein binding|protein binding|RNA binding				0		all_cancers(142;4.41e-05)|all_epithelial(76;3.65e-07)|Colorectal(10;0.00115)|Prostate(80;0.00133)|Ovarian(225;0.0443)		OV - Ovarian serous cystadenocarcinoma(64;6.98e-08)|Epithelial(69;7.87e-08)|all cancers(49;1.06e-05)|COAD - Colon adenocarcinoma(37;0.0123)|Colorectal(14;0.0171)		AAATGGGCTTCAGCCAGCAAA	0.383000													13	34					0	0	0	0
YTHDC2	64848	broad.mit.edu	37	5	112876706	112876706	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:112876706C>G	uc003kqn.2	+	9	1435	c.1252C>G	c.(1252-1254)CAA>GAA	p.Q418E	YTHDC2_uc010jce.1_Missense_Mutation_p.Q418E|YTHDC2_uc010jcf.1_Missense_Mutation_p.Q118E	NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	418							ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		GTACTCAGCTCAAGAAAATAG	0.348000													19	29					0	0	0	0
YTHDC2	64848	broad.mit.edu	37	5	112876709	112876709	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:112876709G>C	uc003kqn.2	+	9	1438	c.1255G>C	c.(1255-1257)GAA>CAA	p.E419Q	YTHDC2_uc010jce.1_Missense_Mutation_p.E419Q|YTHDC2_uc010jcf.1_Missense_Mutation_p.E119Q	NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	419							ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		CTCAGCTCAAGAAAATAGTTT	0.353000													20	31					0	0	0	0
C5orf56	441108	broad.mit.edu	37	5	131822133	131822133	+	Silent	SNP	T	C	C	rs9282763	byFrequency	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:131822133T>C	uc010jds.1	+	4	469	c.294T>C	c.(292-294)CCT>CCC	p.P98P	IRF1_uc003kxd.2_Intron|IRF1_uc003kxa.2_Intron|IRF1_uc003kxb.2_Intron|IRF1_uc010jdt.1_Intron			Q8N8D9	CE056_HUMAN	Homo sapiens full length insert cDNA clone ZA99C08.	Error:Variant_position_missing_in_Q8N8D9_after_alignment											0						TCGAGCGCCCTCCGACCAACC	0.577000													6	25					0	0	0	0
DDX46	9879	broad.mit.edu	37	5	134130685	134130685	+	Nonsense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:134130685C>G	uc003kzw.2	+	14	1940	c.1772C>G	c.(1771-1773)TCA>TGA	p.S591*	DDX46_uc003kzv.1_RNA	NM_014829	NP_055644	Q7L014	DDX46_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	591					mRNA processing|RNA splicing	Cajal body|nuclear speck	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GTGGTTTGCTCAGATGTGGAG	0.443000													20	86					0	0	0	0
C5orf24	134553	broad.mit.edu	37	5	134190687	134190687	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:134190687G>C	uc003kzx.2	+	2	158	c.97G>C	c.(97-99)GAC>CAC	p.D33H	C5orf24_uc003kzy.3_Missense_Mutation_p.D33H|C5orf24_uc003kzz.2_Missense_Mutation_p.D33H	NM_152409	NP_689622	Q7Z6I8	CE024_HUMAN	hypothetical protein LOC134553	33											0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TGATCAGTTTGACATATATTC	0.468000													43	141					0	0	0	0
EGR1	1958	broad.mit.edu	37	5	137802774	137802774	+	Silent	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:137802774G>T	uc003ldb.1	+	2	906	c.636G>T	c.(634-636)CCG>CCT	p.P212P	EGR1_uc011cyu.1_Intron	NM_001964	NP_001955	P18146	EGR1_HUMAN	early growth response 1	212					cellular response to heparin|cellular response to mycophenolic acid|glomerular mesangial cell proliferation|interleukin-1-mediated signaling pathway|positive regulation of glomerular metanephric mesangial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of protein sumoylation|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytoplasm|nucleus	histone acetyltransferase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TCCCCACGCCGAACACTGACA	0.667000													54	190					9.53978e-28	1.00551e-27	1	0
EGR1	1958	broad.mit.edu	37	5	137802793	137802793	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:137802793G>T	uc003ldb.1	+	2	925	c.655G>T	c.(655-657)GAG>TAG	p.E219*	EGR1_uc011cyu.1_Intron	NM_001964	NP_001955	P18146	EGR1_HUMAN	early growth response 1	219					cellular response to heparin|cellular response to mycophenolic acid|glomerular mesangial cell proliferation|interleukin-1-mediated signaling pathway|positive regulation of glomerular metanephric mesangial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of protein sumoylation|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytoplasm|nucleus	histone acetyltransferase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CATTTTCCCTGAGCCACAAAG	0.642000													55	185					1.3268e-25	1.39513e-25	1	0
PCDHA7	56141	broad.mit.edu	37	5	140215185	140215185	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:140215185C>A	uc003lhq.2	+	1	1217	c.1217C>A	c.(1216-1218)TCA>TAA	p.S406*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Nonsense_Mutation_p.S406*	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	406	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATTACTATTCATTGGTGCTG	0.587000													52	114					6.3091e-27	6.64196e-27	1	0
PCDHGB1	56104	broad.mit.edu	37	5	140730835	140730835	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:140730835G>C	uc003ljo.1	+	1	1008	c.1008G>C	c.(1006-1008)GAG>GAC	p.E336D	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.E336D	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	336	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGTTGACGAGAATGACAATG	0.423000													12	22					0	0	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140754080	140754080	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:140754080G>C	uc003ljy.1	+	1	430	c.430G>C	c.(430-432)GAA>CAA	p.E144Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Missense_Mutation_p.E144Q	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	144	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAAATTCTCGAAAACGCAGC	0.423000													11	22					0	0	0	0
FBXO38	81545	broad.mit.edu	37	5	147803613	147803613	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:147803613G>A	uc003lpf.1	+	13	1791	c.1671G>A	c.(1669-1671)GAG>GAA	p.E557E	FBXO38_uc003lpg.1_Silent_p.E557E|FBXO38_uc003lph.2_Silent_p.E557E	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	557						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGTGGCCGAGAGTGGAAATA	0.403000													24	58					0	0	0	0
FBXO38	81545	broad.mit.edu	37	5	147803618	147803618	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:147803618G>A	uc003lpf.1	+	13	1796	c.1676G>A	c.(1675-1677)GGA>GAA	p.G559E	FBXO38_uc003lpg.1_Missense_Mutation_p.G559E|FBXO38_uc003lph.2_Missense_Mutation_p.G559E	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	559						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCGAGAGTGGAAATAATACT	0.403000													25	64					0	0	0	0
FBXO38	81545	broad.mit.edu	37	5	147820025	147820025	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:147820025G>A	uc003lpf.1	+	20	3329	c.3209G>A	c.(3208-3210)CGA>CAA	p.R1070Q	FBXO38_uc003lpg.1_Missense_Mutation_p.R995Q|FBXO38_uc003lph.2_Missense_Mutation_p.R825Q	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	1070						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAGCCACTCGAAGTGAAGAA	0.353000													11	29					0	0	0	0
SLC6A7	6534	broad.mit.edu	37	5	149589169	149589169	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:149589169G>C	uc003lrr.2	+	14	2273	c.1902G>C	c.(1900-1902)TCG>TCC	p.S634S		NM_014228	NP_055043	Q99884	SC6A7_HUMAN	solute carrier family 6, member 7	634	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	neurotransmitter:sodium symporter activity|proline:sodium symporter activity				0		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Proline(DB00172)	AGGAGGAGTCGATGATGTGAG	0.602000													3	10					0	0	0	0
CAMK2A	815	broad.mit.edu	37	5	149602274	149602274	+	Nonstop_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:149602274C>G	uc003lru.2	-	18	1651	c.1436G>C	c.(1435-1437)TGA>TCA	p.*479S	CAMK2A_uc003lrs.2_Nonstop_Mutation_p.*190S|CAMK2A_uc003lrt.2_Nonstop_Mutation_p.*490S	NM_171825	NP_741960	Q9UQM7	KCC2A_HUMAN	calcium/calmodulin-dependent protein kinase II	479					interferon-gamma-mediated signaling pathway|positive regulation of NF-kappaB transcription factor activity|synaptic transmission	cell junction|cytosol|endocytic vesicle membrane|nucleoplasm|presynaptic membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCTGGTCCCTCAGCTGTAAGA	0.602000													8	38					0	0	0	0
GLRA1	2741	broad.mit.edu	37	5	151231080	151231080	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:151231080G>A	uc003lut.2	-	7	1070	c.783C>T	c.(781-783)CTC>CTT	p.L261L	GLRA1_uc003lur.2_Silent_p.L261L|GLRA1_uc003lus.2_Silent_p.L178L	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	261	Helical; (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGATGACAATGAGCAGGCTGG	0.522000													25	69					0	0	0	0
LARP1	23367	broad.mit.edu	37	5	154188023	154188023	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:154188023G>A	uc003lvp.2	+	16	3132	c.2703G>A	c.(2701-2703)CGG>CGA	p.R901R	LARP1_uc003lvo.2_Silent_p.R824R	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	901							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CATCAGAGCGGAAACGCTTGG	0.498000													12	31					0	0	0	0
KIF4B	285643	broad.mit.edu	37	5	154393474	154393474	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:154393474C>G	uc010jih.1	+	1	215	c.55C>G	c.(55-57)CTG>GTG	p.L19V		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	19	Kinesin-motor.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TTGTCGCCCTCTGGTCCCCAA	0.532000													27	47					0	0	0	0
GABRB2	2561	broad.mit.edu	37	5	160972244	160972244	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:160972244C>T	uc003lys.1	-	4	444	c.226G>A	c.(226-228)GAA>AAA	p.E76K	GABRB2_uc011deh.1_5'UTR|GABRB2_uc003lyr.1_Missense_Mutation_p.E76K|GABRB2_uc003lyt.1_Missense_Mutation_p.E76K|GABRB2_uc010jiu.1_Missense_Mutation_p.E13K|GABRB2_uc011dei.1_Missense_Mutation_p.E76K	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	76	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	ATATTGACTTCAGAAACCATA	0.478000													6	15					0	0	0	0
CCDC99	54908	broad.mit.edu	37	5	169028395	169028395	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:169028395G>A	uc003mae.3	+	11	1715	c.1436G>A	c.(1435-1437)CGA>CAA	p.R479Q	CCDC99_uc010jjj.2_Missense_Mutation_p.R408Q|CCDC99_uc011deq.1_Missense_Mutation_p.R296Q|CCDC99_uc010jjk.2_Missense_Mutation_p.R205Q	NM_017785	NP_060255	Q96EA4	SPDLY_HUMAN	coiled-coil domain containing 99	479					cell division|establishment of mitotic spindle orientation|mitotic metaphase plate congression|mitotic prometaphase|protein localization to kinetochore	condensed chromosome outer kinetochore|cytosol|microtubule organizing center|nucleus|spindle pole	kinetochore binding|protein binding			ovary(1)|liver(1)	2	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAAGTTTATCGATTACCGCCT	0.448000													16	37					0	0	0	0
DOCK2	1794	broad.mit.edu	37	5	169125439	169125439	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:169125439C>T	uc003maf.2	+	11	1121	c.1041C>T	c.(1039-1041)TTC>TTT	p.F347F	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	347					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGCAGCACTTCATTCCTTTTC	0.418000													8	28					0	0	0	0
HMP19	51617	broad.mit.edu	37	5	173473844	173473844	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:173473844C>T	uc003mcx.2	+	2	231	c.86C>T	c.(85-87)ACT>ATT	p.T29I		NM_015980	NP_057064	Q9Y328	NSG2_HUMAN	HMP19 protein	29	Cytoplasmic (Potential).				dopamine receptor signaling pathway	cytoplasmic vesicle membrane|Golgi cisterna membrane|integral to membrane|multivesicular body membrane	dopamine receptor binding			central_nervous_system(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00925)|all_lung(126;0.0148)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			CCTCTCATCACTCCCTTGGAG	0.532000													49	128					0	0	0	0
UNC5A	90249	broad.mit.edu	37	5	176306886	176306886	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:176306886G>A	uc003mey.2	+	15	2720	c.2528G>A	c.(2527-2529)TGA>TAA	p.*843*		NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	843					apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCTGAGTGCTGAGGCCGGCCA	0.672000													9	15					0	0	0	0
HK3	3101	broad.mit.edu	37	5	176314714	176314714	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:176314714G>C	uc003mfa.2	-	11	1430	c.1338C>G	c.(1336-1338)CTC>CTG	p.L446L	HK3_uc003mez.2_Silent_p.L2L	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	446	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCGGGGCCAGGAGCATCACTG	0.642000													10	45					0	0	0	0
LMAN2	10960	broad.mit.edu	37	5	176764408	176764408	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:176764408G>A	uc003mge.2	-	5	868	c.631C>T	c.(631-633)CAC>TAC	p.H211Y	LMAN2_uc003mgd.2_Missense_Mutation_p.H211Y	NM_006816	NP_006807	Q12907	LMAN2_HUMAN	lectin, mannose-binding 2 precursor	211	Lumenal (Potential).|L-type lectin-like.				protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	metal ion binding|sugar binding				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AAGGTGTCGTGATCGCGGTTG	0.667000													8	34					0	0	0	0
SLC34A1	6569	broad.mit.edu	37	5	176823825	176823825	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:176823825C>G	uc003mgk.3	+	11	1367	c.1266C>G	c.(1264-1266)TTC>TTG	p.F422L		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	422	Helical; Name=M5; (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GTTCTGTGTTCACCTCGGCCA	0.632000													16	61					0	0	0	0
GFPT2	9945	broad.mit.edu	37	5	179740938	179740938	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr5:179740938G>A	uc003mlw.1	-	14	1398	c.1300C>T	c.(1300-1302)CTG>TTG	p.L434L		NM_005110	NP_005101	O94808	GFPT2_HUMAN	glutamine-fructose-6-phosphate transaminase 2	434	SIS 1.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			ovary(1)|skin(1)	2	all_cancers(89;4.97e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	Medulloblastoma(196;0.0392)|all_neural(177;0.0529)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		L-Glutamine(DB00130)	CAGTAGCGCAGCGCCAGGAGG	0.706000													4	12					0	0	0	0
FOXQ1	94234	broad.mit.edu	37	6	1313540	1313540	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:1313540G>C	uc003mtl.3	+	1	866	c.601G>C	c.(601-603)GAG>CAG	p.E201Q		NM_033260	NP_150285	Q9C009	FOXQ1_HUMAN	forkhead box Q1	201	Fork-head.				DNA fragmentation involved in apoptotic nuclear change|embryo development|hair follicle morphogenesis|pattern specification process|positive regulation of caspase activity|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	caspase regulator activity|DNA bending activity|double-stranded DNA binding|estrogen receptor binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|ubiquitin conjugating enzyme binding				0	Ovarian(93;0.0733)	Breast(5;0.052)|all_lung(73;0.0713)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.0954)|BRCA - Breast invasive adenocarcinoma(62;0.18)		CCCCAACAGCGAGTACACCTT	0.502000													11	20					0	0	0	0
DSP	1832	broad.mit.edu	37	6	7569567	7569567	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:7569567C>T	uc003mxp.1	+	12	1847	c.1568C>T	c.(1567-1569)TCT>TTT	p.S523F	DSP_uc003mxq.1_Missense_Mutation_p.S523F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	523	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GTGGACCTCTCTTGCAAGTAA	0.572000													17	45					0	0	0	0
DSP	1832	broad.mit.edu	37	6	7574983	7574983	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:7574983C>G	uc003mxp.1	+	17	2670	c.2391C>G	c.(2389-2391)GTC>GTG	p.V797V	DSP_uc003mxq.1_Silent_p.V797V	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	797	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AGGAAACTGTCTGCCTGGACC	0.458000													18	44					0	0	0	0
DSP	1832	broad.mit.edu	37	6	7583931	7583931	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:7583931G>C	uc003mxp.1	+	24	6715	c.6436G>C	c.(6436-6438)GAT>CAT	p.D2146H	DSP_uc003mxq.1_Missense_Mutation_p.D1547H	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2146	Plectin 4.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TTTGCCAAAAGATGTCGCCTT	0.468000													9	34					0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16306676	16306676	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:16306676C>T	uc003nbt.2	-	9	3303	c.2332G>A	c.(2332-2334)GAG>AAG	p.E778K	ATXN1_uc010jpi.2_Missense_Mutation_p.E778K|ATXN1_uc010jpj.1_RNA	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	778	Interaction with USP7.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				TTGCGGCTCTCTGGCGCCGAC	0.532000													13	39					0	0	0	0
C6orf62	81688	broad.mit.edu	37	6	24718801	24718801	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:24718801G>A	uc003nel.2	-	1	603	c.96C>T	c.(94-96)TTC>TTT	p.F32F		NM_030939	NP_112201	Q9GZU0	CF062_HUMAN	hypothetical protein LOC81688	32						intracellular					0						TATACATCTTGAAGTCAAACT	0.358000													9	27					0	0	0	0
HIST1H1A	3024	broad.mit.edu	37	6	26017361	26017361	+	Silent	SNP	C	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:26017361C>A	uc003nfo.2	-	1	680	c.600G>T	c.(598-600)ACG>ACT	p.T200T		NM_005325	NP_005316	Q02539	H11_HUMAN	histone cluster 1, H1a	200					nucleosome assembly|spermatogenesis	nucleosome|nucleus	DNA binding			ovary(2)	2						TCTTTGGCTTCGTCACCCTAG	0.448000													21	43					3.7963e-18	3.96804e-18	1	0
ZKSCAN3	80317	broad.mit.edu	37	6	28333766	28333766	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:28333766C>T	uc003nle.3	+	6	1537	c.1321C>T	c.(1321-1323)CTC>TTC	p.L441F	ZKSCAN3_uc010jrc.2_Missense_Mutation_p.L441F|ZKSCAN3_uc003nlf.3_Missense_Mutation_p.L293F|uc010jrd.2_5'Flank	NM_024493	NP_077819	Q9BRR0	ZKSC3_HUMAN	zinc finger with KRAB and SCAN domains 3	441	C2H2-type 5.				positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	chromatin binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						AAGTTCACATCTCCTGAGACA	0.498000													13	23					0	0	0	0
SCAND3	114821	broad.mit.edu	37	6	28542879	28542879	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:28542879G>A	uc003nlo.2	-	3	2221	c.1603C>T	c.(1603-1605)CAG>TAG	p.Q535*		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	535					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCAGTTAGCTGAGAATGGGAC	0.408000													11	48					0	0	0	0
OR10C1	442194	broad.mit.edu	37	6	29408428	29408428	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:29408428C>T	uc011dlp.1	+	1	636	c.636C>T	c.(634-636)CTC>CTT	p.L212L	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTTTGGCCTCATCCTGGGCT	0.587000													45	136					0	0	0	0
HLA-A	3105	broad.mit.edu	37	6	29911304	29911304	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:29911304G>A	uc003nol.2	+	3	603	c.603G>A	c.(601-603)GAG>GAA	p.E201E	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_5'Flank|HLA-A_uc010jrq.2_Silent_p.E80E|HLA-A_uc003nok.2_Silent_p.E80E|HLA-A_uc003non.2_Silent_p.E201E|HLA-A_uc003noo.2_Silent_p.E201E|HLA-A_uc010jrr.2_Silent_p.E201E|HLA-A_uc003nom.2_Silent_p.E80E|HLA-A_uc010klp.2_Silent_p.E173E|HLA-A_uc011dmc.1_Silent_p.E80E|HLA-A_uc011dmd.1_Silent_p.E80E	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	201	Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						ACGGGAAGGAGACGCTGCAGC	0.667000									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			21	24					0	0	0	0
DDR1	780	broad.mit.edu	37	6	30863240	30863240	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:30863240C>T	uc003nrr.2	+	13	1832	c.1573C>T	c.(1573-1575)CGA>TGA	p.R525*	DDR1_uc010jse.2_Intron|DDR1_uc003nrq.2_Intron|DDR1_uc003nrs.2_Nonsense_Mutation_p.R525*|DDR1_uc003nrt.2_Intron|DDR1_uc011dms.1_Intron|DDR1_uc003nru.2_Intron|DDR1_uc003nrv.2_Nonsense_Mutation_p.R525*|DDR1_uc003nrw.1_Silent_p.L296L|DDR1_uc003nry.1_Intron|DDR1_uc003nrx.1_Intron|DDR1_uc003nrz.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	525	Gly/Pro-rich.|Cytoplasmic (Potential).				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CCGTCCCCCTCGAGGCCCGGG	0.677000													68	200					0	0	0	0
BAT2	7916	broad.mit.edu	37	6	31595626	31595626	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:31595626G>A	uc003nvb.3	+	12	1624	c.1375G>A	c.(1375-1377)GAG>AAG	p.E459K	BAT2_uc011dnv.1_RNA|BAT2_uc003nvc.3_Missense_Mutation_p.E459K	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	459	4 X 57 AA type A repeats.|2 X type B repeats.					cytoplasm|nucleus	protein binding				0						GTCGTCATCTGAGATTTCCCT	0.627000													21	62					0	0	0	0
SLC44A4	80736	broad.mit.edu	37	6	31833471	31833471	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:31833471G>A	uc010jti.2	-	15	1644	c.1578C>T	c.(1576-1578)CTC>CTT	p.L526L	NEU1_uc003nxq.3_5'Flank|NEU1_uc010jtg.2_5'Flank|NEU1_uc003nxr.3_5'Flank|NEU1_uc010jth.2_5'Flank|NEU1_uc003nxs.3_5'Flank	NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4	526	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)	ACTCACCTCTGAGCTTGTGGT	0.567000													56	128					0	0	0	0
EHMT2	10919	broad.mit.edu	37	6	31856205	31856205	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:31856205C>G	uc003nxz.1	-	12	1454	c.1444G>C	c.(1444-1446)GAG>CAG	p.E482Q	EHMT2_uc003nxy.1_Missense_Mutation_p.E273Q|EHMT2_uc011don.1_Missense_Mutation_p.E505Q|EHMT2_uc003nya.1_Missense_Mutation_p.E448Q	NM_006709	NP_006700	Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	482					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			ovary(1)	1						CGGTGGGTCTCACAGAGCACC	0.652000													8	23					0	0	0	0
NOTCH4	4855	broad.mit.edu	37	6	32166501	32166501	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:32166501C>T	uc003obb.2	-	25	4681	c.4542G>A	c.(4540-4542)CTG>CTA	p.L1514L	NOTCH4_uc011dpt.1_5'Flank|NOTCH4_uc003oba.2_Silent_p.L177L|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc011dpw.1_5'Flank	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1514	Cytoplasmic (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CCTTTGGCTTCAGTGCCCTGG	0.557000													9	19					0	0	0	0
WDR46	9277	broad.mit.edu	37	6	33256651	33256651	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:33256651G>A	uc003ods.2	-	2	253	c.209C>T	c.(208-210)TCT>TTT	p.S70F	WDR46_uc011dra.1_Intron|WDR46_uc010juo.1_5'Flank|PFDN6_uc003odt.1_5'Flank|PFDN6_uc010jup.1_5'Flank	NM_005452	NP_005443	O15213	WDR46_HUMAN	WD repeat domain 46 isoform 1	70											0						AGGCTTCTTAGAGATCCGAGA	0.577000													12	24					0	0	0	0
STK38	11329	broad.mit.edu	37	6	36508036	36508036	+	Translation_Start_Site	SNP	G	T	T	rs6913714	by1000genomes	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:36508036G>T	uc003omg.2	-	1	532	c.-56C>A	c.(-58--54)CACTG>CAATG		STK38_uc003omh.2_Intron|STK38_uc003omi.2_Intron	NM_007271	NP_009202	Q15208	STK38_HUMAN	serine/threonine kinase 38						intracellular protein kinase cascade|negative regulation of MAP kinase activity	cytoplasm|MLL5-L complex	ATP binding|magnesium ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6						aatccacccagtgtgcactct	0.104000													5	23					0.000602214	0.000607054	1	0
DNAH8	1769	broad.mit.edu	37	6	38759406	38759406	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:38759406G>C	uc003ooe.1	+	19	2806	c.2206G>C	c.(2206-2208)GAA>CAA	p.E736Q		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTCTCTGCCTGAAAGTGGTGC	0.343000													9	26					0	0	0	0
DNAH8	1769	broad.mit.edu	37	6	38816451	38816451	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:38816451C>T	uc003ooe.1	+	35	5022	c.4422C>T	c.(4420-4422)ATC>ATT	p.I1474I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAAAAAATATCCAGAATTGGG	0.348000													5	13					0	0	0	0
MRPL2	51069	broad.mit.edu	37	6	43025831	43025831	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:43025831C>T	uc003ots.1	-	2	360	c.237G>A	c.(235-237)ATG>ATA	p.M79I	KLC4_uc003otr.1_Intron|MRPL2_uc011dvc.1_Missense_Mutation_p.M79I|MRPL2_uc010jyi.2_3'UTR|MRPL2_uc003ott.3_Missense_Mutation_p.M79I|KLC4_uc011dvd.1_5'Flank|KLC4_uc003otu.2_5'Flank|KLC4_uc003otv.1_5'Flank|KLC4_uc003otw.1_5'Flank|KLC4_uc003otx.1_5'Flank|KLC4_uc003oty.1_5'Flank|KLC4_uc003otz.1_5'Flank	NM_015950	NP_057034	Q5T653	RM02_HUMAN	mitochondrial ribosomal protein L2 precursor	79					translation	mitochondrion|ribosome	structural constituent of ribosome				0		Ovarian(999;0.0014)	Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00708)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)	BRCA - Breast invasive adenocarcinoma(397;0.0026)		CAGACTTCCTCATCTTCACTG	0.488000													28	62					0	0	0	0
GSTA3	2940	broad.mit.edu	37	6	52767200	52767200	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:52767200G>A	uc003pbb.2	-	4	295	c.216C>T	c.(214-216)CTC>CTT	p.L72L	GSTA3_uc010jzq.2_Silent_p.L16L	NM_000847	NP_000838	Q16772	GSTA3_HUMAN	glutathione S-transferase alpha 3	72	GST N-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity				0	Lung NSC(77;0.0912)				Glutathione(DB00143)	CAATGTAGTTGAGAATGGCTC	0.423000													53	141					0	0	0	0
PHF3	23469	broad.mit.edu	37	6	64404585	64404585	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:64404585G>C	uc003pep.1	+	5	2637	c.2611G>C	c.(2611-2613)GAA>CAA	p.E871Q	PHF3_uc010kaf.1_Missense_Mutation_p.E871Q|PHF3_uc003pem.2_Missense_Mutation_p.E824Q|PHF3_uc010kag.1_Missense_Mutation_p.E783Q|PHF3_uc010kah.1_Missense_Mutation_p.E685Q|PHF3_uc003pen.2_Missense_Mutation_p.E783Q|PHF3_uc011dxs.1_Missense_Mutation_p.E140Q	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	871					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			ATCCTCAGAAGAAAAAAGTGA	0.358000													34	48					0	0	0	0
OGFRL1	79627	broad.mit.edu	37	6	72003263	72003263	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:72003263G>A	uc003pfx.1	+	3	512	c.349G>A	c.(349-351)GAC>AAC	p.D117N		NM_024576	NP_078852	Q5TC84	OGRL1_HUMAN	opioid growth factor receptor-like 1	117						membrane	receptor activity				0						ATATCAAAATGACTTGAGCAA	0.323000													6	15					0	0	0	0
KCNQ5	56479	broad.mit.edu	37	6	73900384	73900384	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:73900384G>C	uc003pgk.2	+	12	2013	c.1666G>C	c.(1666-1668)GGT>CGT	p.G556R	KCNQ5_uc011dyh.1_Missense_Mutation_p.G575R|KCNQ5_uc011dyi.1_Missense_Mutation_p.G566R|KCNQ5_uc010kat.2_Missense_Mutation_p.G547R|KCNQ5_uc011dyj.1_Missense_Mutation_p.G446R|KCNQ5_uc011dyk.1_Missense_Mutation_p.G306R	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	556					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		ATATTCTGCTGGTCATCTGGA	0.353000													11	38					0	0	0	0
PHIP	55023	broad.mit.edu	37	6	79770451	79770451	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:79770451G>C	uc003pir.2	-	5	500	c.274C>G	c.(274-276)CAA>GAA	p.Q92E	PHIP_uc011dyp.1_Missense_Mutation_p.Q92E	NM_017934	NP_060404	Q8WWQ0	PHIP_HUMAN	pleckstrin homology domain interacting protein	92					insulin receptor signaling pathway|negative regulation of apoptosis|positive regulation of cell proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis	nucleus	insulin receptor binding			large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	6		all_cancers(76;0.00125)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.219)		BRCA - Breast invasive adenocarcinoma(397;0.231)		GGAACACTTTGAGGAATTTCT	0.353000													13	47					0	0	0	0
MRAP2	112609	broad.mit.edu	37	6	84765060	84765060	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:84765060C>G	uc003pkg.3	+	2	213	c.23C>G	c.(22-24)TCT>TGT	p.S8C	MRAP2_uc010kbo.2_5'UTR	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	8					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			skin(2)	2						AGGTTAATTTCTAACAGAACC	0.433000													16	33					0	0	0	0
CNR1	1268	broad.mit.edu	37	6	88853580	88853580	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:88853580G>C	uc011dzq.1	-	2	4977	c.1414C>G	c.(1414-1416)CTG>GTG	p.L472V	CNR1_uc010kbz.2_Missense_Mutation_p.L472V|CNR1_uc011dzr.1_Missense_Mutation_p.L472V|CNR1_uc011dzs.1_Missense_Mutation_p.L472V|CNR1_uc003pmq.3_Missense_Mutation_p.L472V|CNR1_uc011dzt.1_Missense_Mutation_p.L472V|CNR1_uc010kca.2_Missense_Mutation_p.L439V	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	472	Cytoplasmic (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	CAGGCTCACAGAGCCTCGGCA	0.463000													53	147					0	0	0	0
MDN1	23195	broad.mit.edu	37	6	90364054	90364054	+	Splice_Site	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:90364054C>T	uc003pnn.1	-	93	15607	c.15491_splice	c.e93-1	p.D5164_splice		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog						protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CTGGCCACATCTGTCAACAAA	0.443000													32	95					0	0	0	0
MDN1	23195	broad.mit.edu	37	6	90371153	90371153	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:90371153C>T	uc003pnn.1	-	88	14826	c.14710G>A	c.(14710-14712)GAA>AAA	p.E4904K		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	4904					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		GACGCACCTTCTCCTTCTTCA	0.468000													22	68					0	0	0	0
PPIL6	285755	broad.mit.edu	37	6	109740402	109740403	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:109740402_109740403GA>AC	uc003ptg.3	-	6	729_730	c.675_676TC>GT	c.(673-678)GGTCCA>GGGTCA	p.P226S	PPIL6_uc010kdo.2_Missense_Mutation_p.P194S|PPIL6_uc010kdp.2_Missense_Mutation_p.P226S	NM_173672	NP_775943	Q8IXY8	PPIL6_HUMAN	peptidylprolyl isomerase-like 6 isoform 1	226	PPIase cyclophilin-type.				protein folding		peptidyl-prolyl cis-trans isomerase activity				0		all_cancers(87;1.1e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000144)|all_lung(197;0.0221)|Colorectal(196;0.0488)|Lung SC(18;0.0548)		Epithelial(106;0.00684)|BRCA - Breast invasive adenocarcinoma(108;0.00889)|all cancers(137;0.0106)|OV - Ovarian serous cystadenocarcinoma(136;0.0259)		TCAAATGTTGGACCATAAATCG	0.287000													25	80					0	0	0	0
REV3L	5980	broad.mit.edu	37	6	111678260	111678260	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:111678260C>G	uc003puy.3	-	18	7464	c.7141G>C	c.(7141-7143)GAT>CAT	p.D2381H	REV3L_uc003pux.3_Missense_Mutation_p.D2303H|REV3L_uc003puz.3_Missense_Mutation_p.D2303H|REV3L_uc003pva.1_RNA	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	2381					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		GCCTTCTCATCAGCAGCATAG	0.303000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					13	68					0	0	0	0
FYN	2534	broad.mit.edu	37	6	112035584	112035584	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:112035584G>A	uc003pvj.2	-	4	650	c.310C>T	c.(310-312)CAC>TAC	p.H104Y	FYN_uc003pvi.2_Missense_Mutation_p.H104Y|FYN_uc003pvk.2_Missense_Mutation_p.H104Y|FYN_uc003pvh.2_Missense_Mutation_p.H104Y	NM_002037	NP_002028	P06241	FYN_HUMAN	protein-tyrosine kinase fyn isoform a	104	SH3.				axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|central_nervous_system(1)|skin(1)	7		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	TCTCCTTTGTGAAAACTCAGG	0.428000													9	32					0	0	0	0
C6orf225	619208	broad.mit.edu	37	6	112420550	112420550	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:112420550G>C	uc003pvs.2	+	3	489	c.64G>C	c.(64-66)GAG>CAG	p.E22Q		NM_001033564	NP_001028736	Q4G0N7	CF225_HUMAN	hypothetical protein LOC619208	22											0						TTCTTCAATTGAGCTGGAACC	0.448000													25	64					0	0	0	0
VGLL2	245806	broad.mit.edu	37	6	117589564	117589564	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:117589564G>A	uc003pxn.2	+	2	491	c.301G>A	c.(301-303)GAA>AAA	p.E101K	VGLL2_uc003pxo.2_Missense_Mutation_p.E101K	NM_182645	NP_872586	Q8N8G2	VGLL2_HUMAN	vestigial-like 2 isoform 1	101					transcription, DNA-dependent	nucleus				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(226;0.0254)|all cancers(137;0.0676)|OV - Ovarian serous cystadenocarcinoma(136;0.0757)		CGTGGTGGATGAACATTTCAG	0.582000													13	33					0	0	0	0
THEMIS	387357	broad.mit.edu	37	6	128150858	128150858	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:128150858G>A	uc003qbi.2	-	4	791	c.472C>T	c.(472-474)CAT>TAT	p.H158Y	THEMIS_uc010kfa.2_Missense_Mutation_p.H61Y|THEMIS_uc011ebt.1_Missense_Mutation_p.H158Y|THEMIS_uc010kfb.2_Missense_Mutation_p.H123Y	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	158	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TGAGTTTGATGATTCCTTGCT	0.388000													38	84					0	0	0	0
SAMD3	154075	broad.mit.edu	37	6	130465700	130465700	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:130465700C>T	uc003qbv.2	-	13	1854	c.1528G>A	c.(1528-1530)GAA>AAA	p.E510K	SAMD3_uc003qbx.2_Missense_Mutation_p.E510K|SAMD3_uc003qbw.2_Missense_Mutation_p.E510K	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	510										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		ACTTCGTTTTCCTTTTCTTTC	0.373000													12	25					0	0	0	0
TCF21	6943	broad.mit.edu	37	6	134212881	134212881	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:134212881G>A	uc003qei.3	+	2	757	c.481G>A	c.(481-483)GAG>AAG	p.E161K	uc003qeg.1_5'Flank|TCF21_uc003qej.2_Missense_Mutation_p.E161K	NM_003206	NP_003197	O43680	TCF21_HUMAN	transcription factor 21	161					branching involved in ureteric bud morphogenesis|mesoderm development|negative regulation of androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent	nucleus	androgen receptor binding|E-box binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity				0	Colorectal(23;0.221)|Breast(56;0.247)			GBM - Glioblastoma multiforme(68;0.00518)|OV - Ovarian serous cystadenocarcinoma(155;0.00783)		CGGGAAACCCGAGAGTGACCT	0.657000													9	42					0	0	0	0
UTRN	7402	broad.mit.edu	37	6	145110403	145110403	+	Missense_Mutation	SNP	G	A	A	rs148004522		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:145110403G>A	uc003qkt.2	+	61	9000	c.8908G>A	c.(8908-8910)GAA>AAA	p.E2970K		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	2970	Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		TCTCTTGGAAGAAAAATACAG	0.284000													22	61					0	0	0	0
GRM1	2911	broad.mit.edu	37	6	146350788	146350788	+	Silent	SNP	C	T	T	rs143790799		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:146350788C>T	uc010khw.1	+	2	605	c.135C>T	c.(133-135)GTC>GTT	p.V45V	GRM1_uc010khu.1_Silent_p.V45V|GRM1_uc010khv.1_Silent_p.V45V|GRM1_uc003qll.2_Silent_p.V45V|GRM1_uc011edz.1_Silent_p.V45V|GRM1_uc011eea.1_Silent_p.V45V	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	45	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	ACGGAGATGTCATCATTGGAG	0.597000													14	50					0	0	0	0
SASH1	23328	broad.mit.edu	37	6	148865326	148865326	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:148865326C>G	uc003qme.1	+	18	3195	c.2720C>G	c.(2719-2721)ACA>AGA	p.T907R	SASH1_uc011eeb.1_Missense_Mutation_p.T668R|SASH1_uc003qmf.1_Missense_Mutation_p.T317R	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	907							protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		CAGAAATTGACAACTAAGAAA	0.532000													32	65					0	0	0	0
UST	10090	broad.mit.edu	37	6	149262512	149262512	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:149262512G>C	uc003qmg.2	+	3	685	c.389G>C	c.(388-390)GGA>GCA	p.G130A		NM_005715	NP_005706	Q9Y2C2	UST_HUMAN	uronyl-2-sulfotransferase	130	Lumenal (Potential).				protein sulfation	Golgi membrane|integral to membrane	sulfotransferase activity			ovary(2)	2		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.78e-10)|GBM - Glioblastoma multiforme(68;0.138)		GAGAAGCACGGATTTAATTTG	0.433000													34	74					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152708396	152708396	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:152708396C>T	uc010kiw.2	-	54	8900	c.8298G>A	c.(8296-8298)CTG>CTA	p.L2766L	SYNE1_uc003qot.3_Silent_p.L2773L|SYNE1_uc003qou.3_Silent_p.L2766L|SYNE1_uc010kjb.1_Silent_p.L2749L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2766	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ACTTCTCTTTCAGACCTGGCT	0.493000										HNSCC(10;0.0054)			33	95					0	0	0	0
ARID1B	57492	broad.mit.edu	37	6	157522173	157522173	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:157522173G>A	uc003qqn.2	+	18	4543	c.4391G>A	c.(4390-4392)GGC>GAC	p.G1464D	ARID1B_uc003qqo.2_Missense_Mutation_p.G1424D|ARID1B_uc003qqp.2_Missense_Mutation_p.G1411D	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1469	Pro-rich.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		CAGGGCCCTGGCGGCCCTACA	0.597000													9	27					0	0	0	0
ARID1B	57492	broad.mit.edu	37	6	157522462	157522462	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:157522462G>C	uc003qqn.2	+	18	4832	c.4680G>C	c.(4678-4680)ATG>ATC	p.M1560I	ARID1B_uc003qqo.2_Missense_Mutation_p.M1520I|ARID1B_uc003qqp.2_Missense_Mutation_p.M1507I	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1565	Pro-rich.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		TGCCGTCTATGAAGATGCAGA	0.602000													23	61					0	0	0	0
PNLDC1	154197	broad.mit.edu	37	6	160239618	160239618	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:160239618C>G	uc003qsx.1	+	16	1327	c.1156C>G	c.(1156-1158)CAG>GAG	p.Q386E	PNLDC1_uc003qsy.1_Missense_Mutation_p.Q397E	NM_173516	NP_775787	Q8NA58	PNDC1_HUMAN	poly(A)-specific ribonuclease (PARN)-like domain	386	Cytoplasmic (Potential).					integral to membrane|nucleus	nucleic acid binding				0		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;1.55e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		ATCCTTTCCTCAGTACCTTGA	0.577000													22	51					0	0	0	0
LPAL2	80350	broad.mit.edu	37	6	160931998	160931998	+	RNA	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:160931998C>T	uc003qtj.2	-	1		c.159G>A			LPAL2_uc011efy.1_RNA	NR_028093				Homo sapiens cDNA FLJ43922 fis, clone TESTI4012406.												0		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.214)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)		TACCTGATTTCAGAAATAACA	0.348000													25	64					0	0	0	0
THBS2	7058	broad.mit.edu	37	6	169634894	169634894	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr6:169634894C>T	uc003qwt.2	-	11	1834	c.1586G>A	c.(1585-1587)GGA>GAA	p.G529E		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	529	TSP type-1 3.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		GGCCTTCCCTCCGTACTGAGG	0.677000													24	60					0	0	0	0
SDK1	221935	broad.mit.edu	37	7	4089060	4089060	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:4089060C>T	uc003smx.2	+	18	2822	c.2683C>T	c.(2683-2685)CAG>TAG	p.Q895*	SDK1_uc010kso.2_Nonsense_Mutation_p.Q171*	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	895	Fibronectin type-III 3.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CCCTCCGCCTCAGCAGTTTAT	0.612000													22	35					0	0	0	0
MACC1	346389	broad.mit.edu	37	7	20199825	20199825	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:20199825G>A	uc003sus.3	-	5	468	c.159C>T	c.(157-159)TTC>TTT	p.F53F	MACC1_uc010kug.2_Silent_p.F53F	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	53					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						CACGAAGGGTGAAAGCATCCG	0.398000													22	45					0	0	0	0
DNAH11	8701	broad.mit.edu	37	7	21721216	21721216	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:21721216G>A	uc003svc.2	+	31	5427	c.5396G>A	c.(5395-5397)GGA>GAA	p.G1799E		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1799	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CTTCCACCTGGAGACAGACAG	0.383000									Kartagener_syndrome				10	32					0	0	0	0
GARS	2617	broad.mit.edu	37	7	30651843	30651843	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:30651843C>G	uc003tbm.2	+	8	1370	c.1013C>G	c.(1012-1014)TCT>TGT	p.S338C		NM_002047	NP_002038	P41250	SYG_HUMAN	glycyl-tRNA synthetase	338					cell death|diadenosine tetraphosphate biosynthetic process|glycyl-tRNA aminoacylation	cytosol|mitochondrial matrix|soluble fraction	ATP binding|glycine-tRNA ligase activity|protein dimerization activity			ovary(1)	1					Glycine(DB00145)	TCCCCTCGATCTGGACTGATC	0.398000													19	27					0	0	0	0
BMPER	168667	broad.mit.edu	37	7	34118702	34118702	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:34118702G>A	uc011kap.1	+	12	1426	c.1312G>A	c.(1312-1314)GTG>ATG	p.V438M		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	438	VWFD.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						GCACCTCACCGTGCGCTGGAA	0.657000													19	64					0	0	0	0
ELMO1	9844	broad.mit.edu	37	7	37311478	37311478	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:37311478C>G	uc003tfk.1	-	5	509	c.202G>C	c.(202-204)GAG>CAG	p.E68Q	ELMO1_uc011kbc.1_5'UTR|ELMO1_uc010kxg.1_Missense_Mutation_p.E68Q	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	68					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						TTTTTTATCTCATTGCGGTTC	0.353000													11	39					0	0	0	0
TXNDC3	51314	broad.mit.edu	37	7	37907333	37907333	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:37907333G>A	uc003tfn.2	+	11	1023	c.651G>A	c.(649-651)ATG>ATA	p.M217I		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	217	NDK 1.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						TCTCTTTTATGACAAGTGGCT	0.403000									Kartagener_syndrome				10	29					0	0	0	0
C7orf57	136288	broad.mit.edu	37	7	48080963	48080963	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:48080963G>A	uc003toh.3	+	3	300	c.88G>A	c.(88-90)GAG>AAG	p.E30K	C7orf57_uc003toi.3_5'UTR	NM_001100159	NP_001093629	Q8NEG2	CG057_HUMAN	hypothetical protein LOC136288	30										ovary(1)	1						GAAGCGCTCTGAGAAGGCCGT	0.587000													15	51					0	0	0	0
C7orf57	136288	broad.mit.edu	37	7	48092436	48092436	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:48092436C>G	uc003toh.3	+	7	957	c.745C>G	c.(745-747)CAG>GAG	p.Q249E	C7orf57_uc003toi.3_Missense_Mutation_p.Q107E	NM_001100159	NP_001093629	Q8NEG2	CG057_HUMAN	hypothetical protein LOC136288	249										ovary(1)	1						AGTGTTATCTCAGTCCCCACG	0.572000													9	31					0	0	0	0
GRB10	2887	broad.mit.edu	37	7	50737553	50737553	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:50737553G>C	uc003tpi.2	-	4	401	c.370C>G	c.(370-372)CAG>GAG	p.Q124E	GRB10_uc003tph.3_Missense_Mutation_p.Q66E|GRB10_uc003tpj.2_Missense_Mutation_p.Q124E|GRB10_uc003tpk.2_Missense_Mutation_p.Q124E|GRB10_uc010kzb.2_Missense_Mutation_p.Q66E|GRB10_uc003tpl.2_Missense_Mutation_p.Q118E|GRB10_uc003tpm.2_Missense_Mutation_p.Q66E|GRB10_uc003tpn.2_Missense_Mutation_p.Q66E	NM_005311	NP_005302	Q13322	GRB10_HUMAN	growth factor receptor-bound protein 10 isoform	124					insulin receptor signaling pathway|insulin receptor signaling pathway|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway	cytosol|plasma membrane	insulin receptor binding|insulin receptor binding|SH3/SH2 adaptor activity			lung(3)|ovary(2)|upper_aerodigestive_tract(1)	6	Glioma(55;0.08)|all_neural(89;0.245)					TCTTCCTCCTGAAGGCGCCTG	0.438000									Russell-Silver_syndrome				3	7					0	0	0	0
ZNF107	51427	broad.mit.edu	37	7	64167169	64167169	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:64167169G>T	uc003ttd.2	+	7	1273	c.487G>T	c.(487-489)GAA>TAA	p.E163*	ZNF107_uc003tte.2_Nonsense_Mutation_p.E163*	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	163	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				CTACAAATGTGAAGAATGTGG	0.378000													5	23					3.59834e-05	3.64399e-05	1	0
PTPN12	5782	broad.mit.edu	37	7	77267946	77267946	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:77267946C>T	uc003ugh.2	+	17	2270	c.2179C>T	c.(2179-2181)CCA>TCA	p.P727S	PTPN12_uc011kgp.1_Missense_Mutation_p.P608S|PTPN12_uc011kgq.1_Missense_Mutation_p.P597S|PTPN12_uc010lds.2_Missense_Mutation_p.P459S	NM_002835	NP_002826	Q05209	PTN12_HUMAN	protein tyrosine phosphatase, non-receptor type	727						soluble fraction	non-membrane spanning protein tyrosine phosphatase activity|SH3 domain binding			ovary(1)|breast(1)|pancreas(1)	3						CTTAGATCATCCAGCGGGAGG	0.348000													33	66					0	0	0	0
PCLO	27445	broad.mit.edu	37	7	82451948	82451948	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:82451948G>A	uc003uhx.2	-	20	14943	c.14654C>T	c.(14653-14655)TCA>TTA	p.S4885L	PCLO_uc003uhv.2_Missense_Mutation_p.S4885L|PCLO_uc003uht.1_Missense_Mutation_p.S327L|PCLO_uc003uhu.1_Missense_Mutation_p.S306L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4747	Ser-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCCTTCTGATGATGATTTTGA	0.488000													65	182					0	0	0	0
AKAP9	10142	broad.mit.edu	37	7	91622237	91622237	+	Silent	SNP	A	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:91622237A>G	uc003ulg.2	+	5	669	c.444A>G	c.(442-444)CAA>CAG	p.Q148Q	AKAP9_uc003uld.3_Silent_p.Q148Q|AKAP9_uc003ule.2_Silent_p.Q160Q|AKAP9_uc003ulf.2_Silent_p.Q148Q	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	160					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			ATTCTGAACAAGGAGCACAAG	0.388000			T	BRAF	papillary thyroid								27	30					0	0	0	0
KRIT1	889	broad.mit.edu	37	7	91843283	91843283	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:91843283G>C	uc003ulq.1	-	14	1912	c.1741C>G	c.(1741-1743)CTA>GTA	p.L581V	KRIT1_uc010lev.1_Missense_Mutation_p.L338V|KRIT1_uc003ulr.1_Missense_Mutation_p.L581V|KRIT1_uc003uls.1_Missense_Mutation_p.L581V|KRIT1_uc003ult.1_Missense_Mutation_p.L533V|KRIT1_uc003ulu.1_Missense_Mutation_p.L581V|KRIT1_uc003ulv.1_Missense_Mutation_p.L581V	NM_194456	NP_919438	O00522	KRIT1_HUMAN	krev interaction trapped 1 isoform 1	581	Required for RAP1A binding.|FERM.				angiogenesis|cell redox homeostasis|negative regulation of angiogenesis|negative regulation of endothelial cell apoptosis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|regulation of establishment of cell polarity|small GTPase mediated signal transduction	cell-cell junction|cytoskeleton	protein binding|small GTPase regulator activity			ovary(2)|lung(1)	3	all_cancers(62;1.04e-09)|all_epithelial(64;5.75e-09)|Breast(17;0.00206)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			ATGGATTTTAGATTTTCTTCA	0.338000									Familial_Cerebral_Cavernous_Angioma				16	46					0	0	0	0
CCDC132	55610	broad.mit.edu	37	7	92940524	92940524	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:92940524C>G	uc003umo.2	+	20	1923	c.1795C>G	c.(1795-1797)CTA>GTA	p.L599V	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.L569V|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Missense_Mutation_p.L319V	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	599											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			AGATTACAGTCTAAATAAAGT	0.308000													28	94					0	0	0	0
TMEM130	222865	broad.mit.edu	37	7	98457825	98457825	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:98457825G>A	uc003upo.2	-	3	717	c.528C>T	c.(526-528)CTC>CTT	p.L176L	TMEM130_uc011kiq.1_Silent_p.L157L|TMEM130_uc011kir.1_Silent_p.L176L|TMEM130_uc003upn.2_Silent_p.L74L	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	176	Extracellular (Potential).|PKD.					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CCCAGCTGTAGAGAAACAAGG	0.607000													12	24					0	0	0	0
ZNF498	221785	broad.mit.edu	37	7	99220256	99220256	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:99220256G>A	uc003url.1	+	6	1001	c.674G>A	c.(673-675)GGA>GAA	p.G225E	ZNF498_uc003urm.1_Missense_Mutation_p.G61E|ZNF498_uc010lge.1_Missense_Mutation_p.G61E|ZNF498_uc003urn.2_RNA|ZNF498_uc010lgf.1_Intron|ZNF498_uc003uro.1_Missense_Mutation_p.G9E	NM_145115	NP_660090	Q6NSZ9	ZN498_HUMAN	zinc finger and SCAN domain containing 25	225					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_epithelial(64;1.95e-08)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					TTTACTGCTGGATCGCAGGTG	0.542000													56	45					0	0	0	0
GIGYF1	64599	broad.mit.edu	37	7	100284283	100284283	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:100284283G>C	uc003uwg.1	-	7	1692	c.683C>G	c.(682-684)TCC>TGC	p.S228C		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	228										large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					AGGGCTGGCGGAGCGCCAGCG	0.607000													29	92					0	0	0	0
RELN	5649	broad.mit.edu	37	7	103155651	103155651	+	Missense_Mutation	SNP	A	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:103155651A>T	uc003vca.2	-	50	8260	c.8100T>A	c.(8098-8100)TTT>TTA	p.F2700L	RELN_uc010liz.2_Missense_Mutation_p.F2700L	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2700					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TGTCTTCCATAAACATGTCAA	0.498000													9	30					0	0	0	0
COG5	10466	broad.mit.edu	37	7	107204318	107204318	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:107204318G>A	uc003ved.2	-	1	642	c.117C>T	c.(115-117)GTC>GTT	p.V39V	COG5_uc003vec.2_Silent_p.V39V|COG5_uc003vee.2_Silent_p.V39V|DUS4L_uc003veg.2_5'Flank|DUS4L_uc003veh.2_5'Flank|DUS4L_uc011klw.1_5'Flank|DUS4L_uc011klx.1_5'Flank	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	39					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding	p.V39I(1)		central_nervous_system(2)|skin(2)	4						CAGCTACAGCGACGCTGCCGC	0.672000													8	25					0	0	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117431594	117431594	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:117431594G>A	uc003vjf.2	-	4	1748	c.1656C>T	c.(1654-1656)CTC>CTT	p.L552L		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	552	Pro-rich.									ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		GAGTTTGGGAGAGCCCTGGCT	0.517000													40	51					0	0	0	0
CCDC136	64753	broad.mit.edu	37	7	128446796	128446796	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:128446796G>A	uc003vnv.1	+	9	1670	c.1303G>A	c.(1303-1305)GAG>AAG	p.E435K	CCDC136_uc003vnu.1_Intron|CCDC136_uc003vnw.1_Missense_Mutation_p.E382K|CCDC136_uc003vnx.1_Missense_Mutation_p.E251K|CCDC136_uc010llq.1_5'UTR|CCDC136_uc003vny.1_Missense_Mutation_p.E45K	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	435						integral to membrane	protein binding			ovary(2)	2						CGTCACATGTGAGAAGGAAAA	0.592000													4	3					0	0	0	0
PLXNA4	91584	broad.mit.edu	37	7	131878881	131878881	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:131878881G>C	uc003vra.3	-	14	3025	c.2796C>G	c.(2794-2796)ATC>ATG	p.I932M		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	932	IPT/TIG 1.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CAGCCACGCAGATCTCCACGA	0.587000													34	85					0	0	0	0
PTN	5764	broad.mit.edu	37	7	136938251	136938251	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:136938251C>T	uc003vtq.2	-	3	612	c.249G>A	c.(247-249)CAG>CAA	p.Q83Q	PTN_uc010lmx.2_Silent_p.Q83Q|PTN_uc003vtr.1_Silent_p.Q83Q	NM_002825	NP_002816	P21246	PTN_HUMAN	pleiotrophin	83					nervous system development|positive regulation of cell division|positive regulation of cell proliferation|transmembrane receptor protein tyrosine phosphatase signaling pathway	endoplasmic reticulum|extracellular space	growth factor activity|heparin binding|protein phosphatase inhibitor activity			upper_aerodigestive_tract(1)|pancreas(1)	2						TCTTACATCTCTGGGTCTTCA	0.522000													8	35					0	0	0	0
UBN2	254048	broad.mit.edu	37	7	138946092	138946092	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:138946092G>A	uc011kqr.1	+	6	1000	c.1000G>A	c.(1000-1002)GAG>AAG	p.E334K	UBN2_uc003vuv.2_Missense_Mutation_p.E57K	NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	334	Lys-rich.									ovary(1)|skin(1)	2						ATTCCAGAAAGAGAAGGATGC	0.423000													7	15					0	0	0	0
MGAM	8972	broad.mit.edu	37	7	141763322	141763322	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:141763322C>T	uc003vwy.2	+	36	4335	c.4281C>T	c.(4279-4281)TTC>TTT	p.F1427F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1427	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CATCAAGCTTCGTGAATGGGG	0.493000													8	5					0	0	0	0
OR9A2	135924	broad.mit.edu	37	7	142724050	142724050	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:142724050G>C	uc003wcc.1	-	1	170	c.170C>G	c.(169-171)CCC>CGC	p.P57R		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					GAAATACATGGGGGACTGCAG	0.438000													14	47					0	0	0	0
TAS2R40	259286	broad.mit.edu	37	7	142919576	142919576	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:142919576G>C	uc011ksx.1	+	1	405	c.405G>C	c.(403-405)AAG>AAC	p.K135N		NM_176882	NP_795363	P59535	T2R40_HUMAN	taste receptor, type 2, member 40	135	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1	Melanoma(164;0.059)					TCCTGATGAAGAGGAAAATCA	0.423000													33	43					0	0	0	0
KCNH2	3757	broad.mit.edu	37	7	150649526	150649526	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:150649526G>A	uc003wic.2	-	6	1557	c.1544C>T	c.(1543-1545)TCT>TTT	p.S515F	KCNH2_uc003wib.2_Missense_Mutation_p.S175F|KCNH2_uc011kux.1_Missense_Mutation_p.S419F|KCNH2_uc003wid.2_Missense_Mutation_p.S175F|KCNH2_uc003wie.2_Missense_Mutation_p.S515F	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	515	Helical; Name=Segment S3; (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	CTCAGAGCCAGAGCCGAAGAT	0.647000													9	18					0	0	0	0
ESYT2	57488	broad.mit.edu	37	7	158557395	158557395	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:158557395G>A	uc003wob.1	-	9	1284	c.1218C>T	c.(1216-1218)CTC>CTT	p.L406L	ESYT2_uc003woc.1_Silent_p.L230L|ESYT2_uc003wod.1_Silent_p.L406L|ESYT2_uc003woa.1_5'Flank	NM_020728	NP_065779	A0FGR8	ESYT2_HUMAN	family with sequence similarity 62 (C2 domain	434	C2 1.					integral to membrane|plasma membrane				central_nervous_system(2)|kidney(1)	3						ACTTTGGACTGAGGTTCTCCT	0.512000													32	62					0	0	0	0
DEFB134	613211	broad.mit.edu	37	8	11851606	11851606	+	Missense_Mutation	SNP	C	T	T	rs148694123		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:11851606C>T	uc011kxn.1	-	2	84	c.84G>A	c.(82-84)ATG>ATA	p.M28I		NM_001033019	NP_001028191	Q4QY38	DB134_HUMAN	beta-defensin 134 precursor	28					defense response to bacterium	extracellular region					0			STAD - Stomach adenocarcinoma(15;0.033)	COAD - Colon adenocarcinoma(149;0.159)		ATTTCTTGTGCATTTCTGATG	0.358000													14	28					0	0	0	0
KIAA1967	57805	broad.mit.edu	37	8	22475925	22475925	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:22475925G>A	uc003xch.2	+	17	2274	c.2137G>A	c.(2137-2139)GAT>AAT	p.D713N	KIAA1967_uc003xci.2_Missense_Mutation_p.D713N|KIAA1967_uc003xcj.1_Missense_Mutation_p.D382N	NM_199205	NP_954675	Q8N163	K1967_HUMAN	p30 DBC protein	713					apoptosis|positive regulation of apoptosis	mitochondrial matrix|nucleus	enzyme binding|enzyme inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00593)|Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		TGTGTTCTTTGATGCCAACTG	0.512000													31	106					0	0	0	0
KIAA1967	57805	broad.mit.edu	37	8	22476211	22476211	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:22476211G>T	uc003xch.2	+	18	2439	c.2302G>T	c.(2302-2304)GAT>TAT	p.D768Y	KIAA1967_uc003xci.2_Missense_Mutation_p.D768Y|KIAA1967_uc003xcj.1_Missense_Mutation_p.D437Y	NM_199205	NP_954675	Q8N163	K1967_HUMAN	p30 DBC protein	768					apoptosis|positive regulation of apoptosis	mitochondrial matrix|nucleus	enzyme binding|enzyme inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00593)|Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		GGAGGGCCTGGATGGTGGCCT	0.637000													20	47					7.21436e-19	7.54971e-19	1	0
ESCO2	157570	broad.mit.edu	37	8	27634137	27634137	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:27634137G>C	uc003xgg.2	+	3	395	c.312G>C	c.(310-312)GAG>GAC	p.E104D	ESCO2_uc010luy.1_RNA|ESCO2_uc003xgh.2_Missense_Mutation_p.E104D	NM_001017420	NP_001017420	Q56NI9	ESCO2_HUMAN	establishment of cohesion 1 homolog 2	104					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding			central_nervous_system(1)	1		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|KIRC - Kidney renal clear cell carcinoma(542;0.0955)|Kidney(114;0.115)|Colorectal(74;0.132)		TGATAAAAGAGAGTAGATCTA	0.368000									SC_Phocomelia_syndrome				3	10					0	0	0	0
KIAA0146	23514	broad.mit.edu	37	8	48625398	48625398	+	Missense_Mutation	SNP	C	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:48625398C>A	uc003xqd.2	+	15	2161	c.2152C>A	c.(2152-2154)CAC>AAC	p.H718N	KIAA0146_uc011ldb.1_Missense_Mutation_p.H718N|KIAA0146_uc010lxs.2_Missense_Mutation_p.H193N|KIAA0146_uc011ldc.1_Missense_Mutation_p.H648N|KIAA0146_uc011ldd.1_Missense_Mutation_p.H658N|KIAA0146_uc003xqe.2_Missense_Mutation_p.H193N|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Missense_Mutation_p.H407N|KIAA0146_uc010lxt.2_Missense_Mutation_p.H407N|KIAA0146_uc011ldf.1_Missense_Mutation_p.H223N|KIAA0146_uc011ldg.1_Missense_Mutation_p.H208N|KIAA0146_uc003xqg.1_5'Flank	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	718											0		Lung NSC(58;0.175)				GGCTGCCCCTCACAGCCTCTT	0.607000													29	95					3.76114e-14	3.90802e-14	1	0
PXDNL	137902	broad.mit.edu	37	8	52320924	52320924	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:52320924G>A	uc003xqu.3	-	17	3361	c.3260C>T	c.(3259-3261)TCA>TTA	p.S1087L	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1087					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TCTGGACGGTGAAAAGAGCGC	0.507000													7	33					0	0	0	0
TRAM1	23471	broad.mit.edu	37	8	71520408	71520408	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:71520408C>T	uc003xyo.1	-	1	197	c.27G>A	c.(25-27)AAG>AAA	p.K9K	TRAM1_uc011lfc.1_Intron	NM_014294	NP_055109	Q15629	TRAM1_HUMAN	translocation associated membrane protein 1	9	Cytoplasmic (Potential).				cotranslational protein targeting to membrane|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity			ovary(1)	1			Epithelial(68;0.00679)|all cancers(69;0.0324)|OV - Ovarian serous cystadenocarcinoma(28;0.0509)			CTGGGGGGCTCTTGGTGCTTT	0.642000													32	86					0	0	0	0
KCNB2	9312	broad.mit.edu	37	8	73850006	73850006	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:73850006G>A	uc003xzb.2	+	3	3004	c.2416G>A	c.(2416-2418)GAA>AAA	p.E806K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	806	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GAGCTTCACTGAAATAGATAC	0.527000													9	25					0	0	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766606	77766606	+	Missense_Mutation	SNP	G	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:77766606G>T	uc003yav.2	+	10	7701	c.7314G>T	c.(7312-7314)CAG>CAT	p.Q2438H	ZFHX4_uc003yau.1_Missense_Mutation_p.Q2483H|ZFHX4_uc003yaw.1_Missense_Mutation_p.Q2438H	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2438						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CGTCTCTCCAGAACAGTCTAC	0.483000										HNSCC(33;0.089)			17	24					9.16793e-09	9.38163e-09	1	0
TMEM67	91147	broad.mit.edu	37	8	94768086	94768086	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:94768086G>A	uc011lgk.1	+	2	375	c.304G>A	c.(304-306)GAA>AAA	p.E102K	TMEM67_uc010mau.2_Missense_Mutation_p.E102K|TMEM67_uc010mav.2_Missense_Mutation_p.E102K|TMEM67_uc010mat.1_Missense_Mutation_p.E17K|TMEM67_uc010maw.2_Missense_Mutation_p.E102K|TMEM67_uc003yga.3_Intron	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	102					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			AAAGTGCCCAGAAAACATGGT	0.249000													5	19					0	0	0	0
KIAA1429	25962	broad.mit.edu	37	8	95556119	95556119	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:95556119C>T	uc003ygo.1	-	2	128	c.115G>A	c.(115-117)GAA>AAA	p.E39K	KIAA1429_uc003ygp.2_Missense_Mutation_p.E39K	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	39					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			ACTCGGACTTCATTGATATAA	0.408000													36	113					0	0	0	0
MATN2	4147	broad.mit.edu	37	8	98991144	98991144	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:98991144G>A	uc003yic.2	+	6	1220	c.989G>A	c.(988-990)GGA>GAA	p.G330E	MATN2_uc003yib.1_Missense_Mutation_p.G330E|MATN2_uc010mbh.1_Missense_Mutation_p.G330E|MATN2_uc003yid.2_Missense_Mutation_p.G330E|MATN2_uc003yie.1_Missense_Mutation_p.G330E|MATN2_uc010mbi.1_Missense_Mutation_p.G163E	NM_002380	NP_002371	O00339	MATN2_HUMAN	matrilin 2 isoform a precursor	330	EGF-like 3.					proteinaceous extracellular matrix	calcium ion binding			ovary(2)	2	Breast(36;1.43e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.244)			GAAAACCACGGATGTGAACAT	0.428000													9	28					0	0	0	0
KCNS2	3788	broad.mit.edu	37	8	99440755	99440755	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:99440755C>T	uc003yin.2	+	2	898	c.548C>T	c.(547-549)TCA>TTA	p.S183L		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	183	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			CCCGGCTACTCAGTGCTGAGC	0.592000													8	43					0	0	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457547	110457547	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:110457547G>A	uc003yne.2	+	38	5553	c.5449G>A	c.(5449-5451)GGA>AGA	p.G1817R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1817	Extracellular (Potential).|IPT/TIG 10.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGTTGTGGTGGGAAGTAAAGG	0.473000										HNSCC(38;0.096)			22	40					0	0	0	0
ATAD2	29028	broad.mit.edu	37	8	124383194	124383194	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:124383194C>G	uc003yqh.3	-	6	784	c.676G>C	c.(676-678)GAT>CAT	p.D226H	ATAD2_uc011lii.1_Missense_Mutation_p.K17N|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.D226H	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	226					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CTTTGAATATCTTTCTGTTTT	0.294000													5	22					0	0	0	0
GSDMC	56169	broad.mit.edu	37	8	130760899	130760899	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:130760899C>A	uc003ysr.2	-	14	2257	c.1375G>T	c.(1375-1377)GAG>TAG	p.E459*		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	459						mitochondrion				ovary(2)|skin(1)	3						GCCAAACCCTCACTCTGGAGT	0.547000													32	64					2.61193e-14	2.71715e-14	1	0
ASAP1	50807	broad.mit.edu	37	8	131179784	131179784	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:131179784C>G	uc003yta.1	-	10	935	c.907G>C	c.(907-909)GAA>CAA	p.E303Q	ASAP1_uc003ysz.1_Missense_Mutation_p.E111Q|ASAP1_uc011liw.1_Missense_Mutation_p.E296Q	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	303					cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						CCACTTACTTCTTTCTGATCC	0.383000													48	210					0	0	0	0
TG	7038	broad.mit.edu	37	8	133883682	133883682	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:133883682G>C	uc003ytw.2	+	4	405	c.364G>C	c.(364-366)GAT>CAT	p.D122H		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	122	Thyroglobulin type-1 2.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TCAGTGTCAGGATTCAGGGGA	0.552000													29	79					0	0	0	0
SLC45A4	57210	broad.mit.edu	37	8	142238343	142238343	+	Nonsense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:142238343G>C	uc003ywd.1	-	1	331	c.23C>G	c.(22-24)TCA>TGA	p.S8*	SLC45A4_uc003ywc.1_Nonsense_Mutation_p.S8*|SLC45A4_uc010meq.1_Intron	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	Error:Variant_position_missing_in_Q5BKX6_after_alignment					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			GGACAGCCCTGAGGCTGGGCT	0.547000													26	160					0	0	0	0
EPPK1	83481	broad.mit.edu	37	8	144943051	144943051	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:144943051G>A	uc003zaa.1	-	1	4384	c.4371C>T	c.(4369-4371)GTC>GTT	p.V1457V		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1457						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCCCTGTGCTGACGGGCACCT	0.617000													15	23					0	0	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145773815	145773815	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr8:145773815C>T	uc003zdt.1	-	6	1210	c.655G>A	c.(655-657)GAT>AAT	p.D219N	ARHGAP39_uc011llk.1_Missense_Mutation_p.D219N|ARHGAP39_uc003zds.1_Missense_Mutation_p.D219N	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	219					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						GGCTCCCGATCAGCGACCTTG	0.701000													8	21					0	0	0	0
FOXD4	2298	broad.mit.edu	37	9	117881	117881	+	Nonsense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:117881G>C	uc003zfz.2	-	1	537	c.239C>G	c.(238-240)TCA>TGA	p.S80*		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	forkhead box D4	80					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		GCCAAACTCTGAGGGGTCGCT	0.711000													62	70					0	0	0	0
DOCK8	81704	broad.mit.edu	37	9	434937	434937	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:434937G>A	uc003zgf.2	+	39	5153	c.5041G>A	c.(5041-5043)GAC>AAC	p.D1681N	DOCK8_uc010mgu.2_Missense_Mutation_p.D983N|DOCK8_uc010mgv.2_Missense_Mutation_p.D1581N|DOCK8_uc003zgk.2_Missense_Mutation_p.D1139N	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	1681	DHR-2.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		CATGCTGGAGGACCACAGCTA	0.483000													15	64					0	0	0	0
DMRT2	10655	broad.mit.edu	37	9	1057048	1057048	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:1057048G>C	uc003zha.2	+	4	1661	c.1461G>C	c.(1459-1461)TTG>TTC	p.L487F	DMRT2_uc003zgx.3_Missense_Mutation_p.L254F|DMRT2_uc010mgz.2_Missense_Mutation_p.L254F|DMRT2_uc003zgy.3_Missense_Mutation_p.L331F|DMRT2_uc003zhb.3_3'UTR|DMRT2_uc011llt.1_3'UTR|DMRT2_uc011llu.1_3'UTR|DMRT2_uc011llv.1_Missense_Mutation_p.L487F	NM_181872	NP_870987	Q9Y5R5	DMRT2_HUMAN	doublesex and mab-3 related transcription factor	487					male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0		all_lung(10;1.49e-09)|Lung NSC(10;1.86e-09)		Lung(218;0.0195)|GBM - Glioblastoma multiforme(50;0.0388)		GTCCTGAGTTGAAAACACCAT	0.408000													14	35					0	0	0	0
GLIS3	169792	broad.mit.edu	37	9	4285986	4285986	+	Missense_Mutation	SNP	G	C	C	rs10758591	by1000genomes	TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:4285986G>C	uc003zii.1	-	2	1153	c.440C>G	c.(439-441)CCC>CGC	p.P147R	GLIS3_uc003zhx.1_Intron|GLIS3_uc003zic.1_Intron|GLIS3_uc003zie.1_Intron|GLIS3_uc010mhh.1_Intron|GLIS3_uc003zid.1_Intron|GLIS3_uc010mhi.1_Intron|GLIS3_uc003zif.1_Intron|GLIS3_uc003zig.1_Intron|GLIS3_uc003zih.1_Intron			Q8NEA6	GLIS3_HUMAN	SubName: Full=GLIS family zinc finger 3 transcript variant TS2; SubName: Full=GLIS family zinc finger 3 transcript variant TS3; SubName: Full=GLIS family zinc finger 3 transcript variant TS4; SubName: Full=GLIS family zinc finger 3 transcript variant TS5; Flags: Fragment;	Error:Variant_position_missing_in_Q8NEA6_after_alignment					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		AATGGGATGGGGGAGAAAAAA	0.408000													7	27					0	0	0	0
FREM1	158326	broad.mit.edu	37	9	14797546	14797546	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:14797546G>A	uc003zlm.2	-	21	4379	c.3789C>T	c.(3787-3789)ACC>ACT	p.T1263T	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1263	CSPG 9.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CTACTGAAATGGTTTTAAGTA	0.378000													13	56					0	0	0	0
MTAP	4507	broad.mit.edu	37	9	21818161	21818161	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:21818161C>T	uc003zph.2	+	4	420	c.307C>T	c.(307-309)CAG>TAG	p.Q103*	MTAP_uc003zpi.1_Nonsense_Mutation_p.Q103*|MTAP_uc010mit.2_RNA|MTAP_uc011lnk.1_Nonsense_Mutation_p.Q120*|MTAP_uc011lnl.1_Nonsense_Mutation_p.Q36*	NM_002451	NP_002442	Q13126	MTAP_HUMAN	5'-methylthioadenosine phosphorylase	103					nucleoside metabolic process	cytoplasm	phosphorylase activity|S-methyl-5-thioadenosine phosphorylase activity			central_nervous_system(1)	1		all_cancers(5;0)|Hepatocellular(5;0.00162)|Colorectal(97;0.173)		GBM - Glioblastoma multiforme(3;0)|Lung(24;2.24e-57)|LUSC - Lung squamous cell carcinoma(38;1.97e-36)|STAD - Stomach adenocarcinoma(4;3.26e-05)|OV - Ovarian serous cystadenocarcinoma(39;0.00931)|COAD - Colon adenocarcinoma(8;0.15)	Adenine(DB00173)	GGAGGAGATTCAGCCCGGCGA	0.453000													13	65					0	0	0	0
TOPORS	10210	broad.mit.edu	37	9	32543655	32543655	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:32543655G>C	uc003zrb.2	-	3	1035	c.868C>G	c.(868-870)CCA>GCA	p.P290A	TOPORS_uc003zrc.2_Missense_Mutation_p.P223A	NM_005802	NP_005793	Q9NS56	TOPRS_HUMAN	topoisomerase I binding, arginine/serine-rich	290	Required for DNA-binding.				DNA damage response, signal transduction resulting in induction of apoptosis|maintenance of protein location in nucleus|proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation|transcription, DNA-dependent	nuclear speck|PML body	antigen binding|DNA binding|DNA topoisomerase I binding|SUMO ligase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.0018)		AGGCAAGCTGGATTTCTACGG	0.393000													17	48					0	0	0	0
TLN1	7094	broad.mit.edu	37	9	35715160	35715160	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:35715160C>G	uc003zxt.2	-	21	3004	c.2650G>C	c.(2650-2652)GAG>CAG	p.E884Q		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	884					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TGCTGCTCCTCACTGTCAGGG	0.602000													8	24					0	0	0	0
TOMM5	401505	broad.mit.edu	37	9	37592509	37592509	+	Silent	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:37592509G>C	uc010mlx.2	-	1	128	c.21C>G	c.(19-21)CTC>CTG	p.L7L	TOMM5_uc004aae.3_RNA|TOMM5_uc011lql.1_Silent_p.L7L|TOMM5_uc004aaf.2_Silent_p.L7L	NM_001001790	NP_001001790	Q8N4H5	TOM5_HUMAN	translocase of outer mitochondrial membrane 5	7						integral to membrane|mitochondrial outer membrane translocase complex					0						GCTTCGGCGCGAGGCCCTCAA	0.632000													17	60					0	0	0	0
PGM5	5239	broad.mit.edu	37	9	71144510	71144510	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:71144510G>A	uc004agr.2	+	11	1871	c.1642G>A	c.(1642-1644)GCA>ACA	p.A548T		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	548					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						CATAGCCATCGCACTGAAAAT	0.483000													3	10					0	0	0	0
SHC3	53358	broad.mit.edu	37	9	91652995	91652995	+	Silent	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:91652995C>T	uc004aqg.2	-	11	1876	c.1569G>A	c.(1567-1569)AAG>AAA	p.K523K		NM_016848	NP_058544	Q92529	SHC3_HUMAN	src homology 2 domain-containing transforming	523	SH2.				central nervous system development|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	protein binding|signal transducer activity			lung(3)|skin(1)	4						TGGTGGTGCTCTTCCTGACCA	0.607000													36	103					0	0	0	0
WNK2	65268	broad.mit.edu	37	9	96051216	96051216	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:96051216C>G	uc004ati.1	+	20	4291	c.4291C>G	c.(4291-4293)CTG>GTG	p.L1431V	WNK2_uc011lud.1_Missense_Mutation_p.L1394V|WNK2_uc004atj.2_Missense_Mutation_p.L1394V|WNK2_uc004atk.2_Missense_Mutation_p.L1031V|WNK2_uc004atl.1_5'UTR	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1431					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						TGTGACTGCTCTGCCCCAAGA	0.682000													4	8					0	0	0	0
PTCH1	5727	broad.mit.edu	37	9	98209310	98209310	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:98209310C>G	uc004avk.3	-	23	4416	c.4228G>C	c.(4228-4230)GAG>CAG	p.E1410Q	PTCH1_uc010mrn.2_Missense_Mutation_p.E202Q|PTCH1_uc010mro.2_Missense_Mutation_p.E1259Q|PTCH1_uc010mrp.2_Missense_Mutation_p.E1259Q|PTCH1_uc010mrq.2_Missense_Mutation_p.E1259Q|PTCH1_uc004avl.3_Missense_Mutation_p.E1259Q|PTCH1_uc010mrr.2_Missense_Mutation_p.E1344Q|PTCH1_uc004avm.3_Missense_Mutation_p.E1409Q	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	1410	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				TGGGGGTCCTCAAACAGGCCG	0.672000									Basal_Cell_Nevus_syndrome				19	86					0	0	0	0
FAM22G	441457	broad.mit.edu	37	9	99699595	99699595	+	Missense_Mutation	SNP	A	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:99699595A>C	uc004awq.1	+	5	1947	c.1232A>C	c.(1231-1233)GAG>GCG	p.E411A	HIATL2_uc004awr.1_Intron	NM_001045477	NP_001038942	Q5VZR2	FA22G_HUMAN	hypothetical protein LOC441457	411										skin(1)	1		Acute lymphoblastic leukemia(62;0.0527)				GGCAAAGTGGAGCAGCCGCAG	0.592000													39	100					0	0	0	0
AKNA	80709	broad.mit.edu	37	9	117139665	117139665	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:117139665G>A	uc004biq.3	-	2	557	c.422C>T	c.(421-423)TCC>TTC	p.S141F	AKNA_uc004bio.3_5'Flank|AKNA_uc004bip.3_Missense_Mutation_p.S60F|AKNA_uc004bir.3_Missense_Mutation_p.S141F|AKNA_uc004bis.3_Missense_Mutation_p.S141F|AKNA_uc010mve.2_Missense_Mutation_p.S22F|AKNA_uc004biu.1_Intron|AKNA_uc004biv.1_Missense_Mutation_p.S141F|AKNA_uc004biw.1_Missense_Mutation_p.S141F	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	141					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						CAACCTTGAGGAGCTCTCTCC	0.622000													6	13					0	0	0	0
NTNG2	84628	broad.mit.edu	37	9	135116365	135116365	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:135116365G>A	uc004cbh.2	+	7	2067	c.1291G>A	c.(1291-1293)GAG>AAG	p.E431K		NM_032536	NP_115925	Q96CW9	NTNG2_HUMAN	netrin G2 precursor	431	Laminin EGF-like 3.				axonogenesis	anchored to plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(145;1.23e-05)|Epithelial(140;0.000173)		CGAGTGCCGCGAGGGCGCGGC	0.721000													5	12					0	0	0	0
C9orf171	389799	broad.mit.edu	37	9	135447846	135447846	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:135447846G>A	uc004cbn.2	+	7	960	c.912G>A	c.(910-912)GAG>GAA	p.E304E	C9orf171_uc004cbo.2_Silent_p.E268E	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	304										ovary(4)|large_intestine(1)	5						ACCGGGAAGAGTGTGCCGTGC	0.607000													23	39					0	0	0	0
NDOR1	27158	broad.mit.edu	37	9	140108741	140108741	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:140108741C>G	uc004clw.2	+	6	709	c.598C>G	c.(598-600)CAG>GAG	p.Q200E	NDOR1_uc004clx.2_Missense_Mutation_p.Q200E|NDOR1_uc011mes.1_Missense_Mutation_p.Q200E|NDOR1_uc004cly.2_Missense_Mutation_p.Q166E	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	200					cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		CCCCGGCTCTCAGGAGCCCCC	0.642000													8	40					0	0	0	0
ENTPD8	377841	broad.mit.edu	37	9	140330690	140330690	+	Silent	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr9:140330690G>A	uc004cmw.2	-	7	1009	c.825C>T	c.(823-825)CTC>CTT	p.L275L	C9orf167_uc011mew.1_Intron|ENTPD8_uc004cmx.2_Silent_p.L275L	NM_001033113	NP_001028285	Q5MY95	ENTP8_HUMAN	ectonucleoside triphosphate diphosphohydrolase 8	275	Extracellular (Potential).					integral to membrane|plasma membrane	ATP binding			skin(1)	1	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000224)|Epithelial(140;0.000898)		GGTAGCCGCTGAGGTAGCACG	0.706000													7	17					0	0	0	0
PPP2R3B	28227	broad.mit.edu	37	X	299394	299394	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:299394C>T	uc004cpg.2	-	12	1723	c.1522G>A	c.(1522-1524)GAG>AAG	p.E508K	PPP2R3B_uc004cpf.2_Missense_Mutation_p.E109K	NM_013239	NP_037371	Q9Y5P8	P2R3B_HUMAN	protein phosphatase 2, regulatory subunit B'',	508					cell cycle arrest|protein dephosphorylation	nucleus|protein phosphatase type 2A complex	calcium ion binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TCGTACTCCTCGGCCGCGTAC	0.433000													13	30					0	0	0	0
DMD	1756	broad.mit.edu	37	X	32404565	32404565	+	Silent	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:32404565C>G	uc004dda.1	-	33	4780	c.4536G>C	c.(4534-4536)CTG>CTC	p.L1512L	DMD_uc004dcw.2_Silent_p.L168L|DMD_uc004dcx.2_Silent_p.L171L|DMD_uc004dcz.2_Silent_p.L1389L|DMD_uc004dcy.1_Silent_p.L1508L|DMD_uc004ddb.1_Silent_p.L1504L|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1512	Spectrin 10.|Interaction with SYNM (By similarity).				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TCACTTCACTCAGACTTTTAT	0.303000													8	11					0	0	0	0
USP9X	8239	broad.mit.edu	37	X	41027443	41027443	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:41027443G>A	uc004dfb.2	+	18	3241	c.2608G>A	c.(2608-2610)GAG>AAG	p.E870K	USP9X_uc004dfc.2_Missense_Mutation_p.E870K	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	870					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						TGATTATCATGAGGAAAGAAC	0.333000													12	15					0	0	0	0
GLOD5	392465	broad.mit.edu	37	X	48629496	48629496	+	Missense_Mutation	SNP	A	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:48629496A>G	uc011mmh.1	+	3	396	c.355A>G	c.(355-357)AAG>GAG	p.K119E		NM_001080489	NP_001073958			glyoxalase domain containing 5												0						CCAGCACCTCAAGGTGAGTGG	0.478000													4	11					0	0	0	0
PFKFB1	5207	broad.mit.edu	37	X	54978429	54978429	+	Missense_Mutation	SNP	C	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:54978429C>T	uc004dty.1	-	8	826	c.755G>A	c.(754-756)CGC>CAC	p.R252H	PFKFB1_uc010nkd.1_Intron|PFKFB1_uc011mol.1_Missense_Mutation_p.R187H	NM_002625	NP_002616	P16118	F261_HUMAN	6-phosphofructo-2-kinase/fructose-2,	252	Fructose-2,6-bisphosphatase.				energy reserve metabolic process|fructose 2,6-bisphosphate metabolic process|gluconeogenesis|glycolysis|intracellular protein kinase cascade	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(1)	1						GTAGATGGAGCGAGGTGTGAC	0.557000													5	13					0	0	0	0
MED12	9968	broad.mit.edu	37	X	70348164	70348164	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:70348164C>G	uc004dyy.2	+	23	3427	c.3228C>G	c.(3226-3228)ATC>ATG	p.I1076M	MED12_uc011mpq.1_Missense_Mutation_p.I1076M|MED12_uc004dyz.2_Missense_Mutation_p.I1076M|MED12_uc004dza.2_Missense_Mutation_p.I923M|MED12_uc010nla.2_5'Flank	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	1076					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					ACATCGCAATCCTGTGTGCAG	0.493000													9	30					0	0	0	0
TAF1	6872	broad.mit.edu	37	X	70644011	70644011	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:70644011C>G	uc004dzu.3	+	32	4724	c.4673C>G	c.(4672-4674)TCC>TGC	p.S1558C	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.S1579C|TAF1_uc004dzv.3_Missense_Mutation_p.S732C|TAF1_uc010nld.1_RNA|TAF1_uc010nle.1_RNA|TAF1_uc010nlf.1_5'UTR|TAF1_uc004dzx.2_RNA|TAF1_uc004dzy.2_RNA|TAF1_uc004dzw.1_RNA	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	1558	Interaction with ASF1A and ASF1B.|Bromo 2.|Protein kinase 2.				G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				CAGAACATCTCCAAGCACAAG	0.393000													23	17					0	0	0	0
SERPINA7	6906	broad.mit.edu	37	X	105280663	105280663	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:105280663C>G	uc004eme.1	-	1	403	c.387G>C	c.(385-387)CAG>CAC	p.Q129H	SERPINA7_uc010npd.2_Missense_Mutation_p.Q129H|SERPINA7_uc010npe.1_Missense_Mutation_p.Q129H	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	129					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	CATTTCCTATCTGCAATTCCA	0.448000													35	37					0	0	0	0
RGAG1	57529	broad.mit.edu	37	X	109695755	109695755	+	Missense_Mutation	SNP	C	T	T	rs146389599		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:109695755C>T	uc004eor.1	+	3	2156	c.1910C>T	c.(1909-1911)TCT>TTT	p.S637F	RGAG1_uc011msr.1_Missense_Mutation_p.S637F	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	637										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						ACCACAGCTTCTGAAGCAATG	0.507000													19	18					0	0	0	0
THOC2	57187	broad.mit.edu	37	X	122778706	122778706	+	Missense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:122778706G>C	uc004etu.2	-	14	1515	c.1483C>G	c.(1483-1485)CTT>GTT	p.L495V	THOC2_uc011muh.1_Missense_Mutation_p.L416V|THOC2_uc011mui.1_Missense_Mutation_p.L380V	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	495					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						ATCAAAGAAAGAGATGGAAGT	0.333000													20	17					0	0	0	0
FAM127B	26071	broad.mit.edu	37	X	134185808	134185808	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:134185808C>G	uc004eyf.2	-	1	414	c.331G>C	c.(331-333)GAG>CAG	p.E111Q	FAM127B_uc004eyg.3_Intron	NM_001078172	NP_001071640	Q9BWD3	F127B_HUMAN	family with sequence similarity 127, member B	111											0	Acute lymphoblastic leukemia(192;0.000127)					TAGAAGTCCTCGTCCTCCTCC	0.647000													8	10					0	0	0	0
FAM127B	26071	broad.mit.edu	37	X	134185958	134185958	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:134185958C>G	uc004eyf.2	-	1	264	c.181G>C	c.(181-183)GAC>CAC	p.D61H	FAM127B_uc004eyg.3_Missense_Mutation_p.D61H	NM_001078172	NP_001071640	Q9BWD3	F127B_HUMAN	family with sequence similarity 127, member B	61											0	Acute lymphoblastic leukemia(192;0.000127)					TTCAGGGCGTCGTTGGAGAAC	0.587000													12	27					0	0	0	0
MAGEC3	139081	broad.mit.edu	37	X	140969550	140969550	+	Missense_Mutation	SNP	G	A	A			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:140969550G>A	uc011mwp.1	+	4	877	c.877G>A	c.(877-879)GAG>AAG	p.E293K		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	293	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGCATCTGAGGAGGTCATCTG	0.522000													61	69					0	0	0	0
GABRA3	2556	broad.mit.edu	37	X	151336902	151336902	+	Nonsense_Mutation	SNP	G	C	C			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:151336902G>C	uc010ntk.1	-	10	1517	c.1277C>G	c.(1276-1278)TCA>TGA	p.S426*		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	426	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGTTGGGGTTGAGGAGGCACT	0.537000													54	74					0	0	0	0
ATP2B3	492	broad.mit.edu	37	X	152814277	152814277	+	Missense_Mutation	SNP	C	G	G			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:152814277C>G	uc004fht.1	+	8	1429	c.1303C>G	c.(1303-1305)CTT>GTT	p.L435V	ATP2B3_uc004fhs.1_Missense_Mutation_p.L435V	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	435	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGGCCTGCCTCTTGCTGTCAC	0.483000													19	19					0	0	0	0
Unknown	0	broad.mit.edu	37	10	130262780	130262780	+	IGR	DEL	A	-	-			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:130262780delA								MKI67 (338312 upstream) : None (None downstream)																							ctcctcctccaccatcctccc	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	10	134206066	134206068	+	IGR	DEL	TGG	-	-	rs72458419		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr10:134206066_134206068delTGG								LRRC27 (11056 upstream) : PWWP2B (4634 downstream)																							gtggtggtaatggtgatgatggt	0.000													---	---	---							
GALNT4	8693	broad.mit.edu	37	12	89919631	89919632	+	5'Flank	DEL	CC	-	-	rs67346689		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr12:89919631_89919632delCC	uc001tbd.2	-						POC1B_uc001tba.2_5'Flank|POC1B_uc001tbb.2_5'Flank|POC1B_uc001tbc.2_Intron|POC1B_uc010sun.1_Intron|GALNT4_uc001tbe.2_Intron|GALNT4_uc010suo.1_Intron	NM_003774	NP_003765	Q8N4A0	GALT4_HUMAN	polypeptide N-acetylgalactosaminyltransferase 4						carbohydrate metabolic process	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0						CAGGGAGGGACCCCCCCCACCT	0.668													---	---	---							
NXN	64359	broad.mit.edu	37	17	708312	708312	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:708312delA	uc002fsa.2	-	6	1088	c.996delT	c.(994-996)TTTfs	p.F332fs	NXN_uc010vqd.1_Intron|NXN_uc002frz.2_Frame_Shift_Del_p.F83fs|NXN_uc010vqe.1_Frame_Shift_Del_p.F224fs	NM_022463	NP_071908	Q6DKJ4	NXN_HUMAN	nucleoredoxin	332					cell differentiation|cell redox homeostasis|multicellular organismal development|Wnt receptor signaling pathway	cytosol|nucleus	protein-disulfide reductase activity			ovary(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (25;0.0237)		TCATACCTACAAAAAGGACGA	0.682													---	---	---							
SRCIN1	80725	broad.mit.edu	37	17	36705380	36705380	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:36705380delC	uc002hqd.2	-	16	3254	c.3029delG	c.(3028-3030)CGCfs	p.R1010fs	SRCIN1_uc002hqf.1_Frame_Shift_Del_p.R882fs|SRCIN1_uc002hqe.2_Frame_Shift_Del_p.R864fs	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	882	Pro-rich.				exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						GAAGCTCCGGCGGGGAGGGGG	0.662													---	---	---							
ZNF750	79755	broad.mit.edu	37	17	80790115	80790116	+	Frame_Shift_Ins	INS	-	TC	TC			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr17:80790115_80790116insTC	uc002kga.2	-	2	526_527	c.215_216insGA	c.(214-216)GACfs	p.D72fs	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	72						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			TTTGCTTGGGGTCTAGTGAGTT	0.475													---	---	---							
CCDC88A	55704	broad.mit.edu	37	2	55591157	55591158	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr2:55591157_55591158insT	uc002ryv.2	-	6	1256_1257	c.414_415insA	c.(412-417)AAAGAGfs	p.K138fs	CCDC88A_uc010yoz.1_Frame_Shift_Ins_p.K138fs|CCDC88A_uc010ypa.1_Frame_Shift_Ins_p.K138fs|CCDC88A_uc010ypb.1_Frame_Shift_Ins_p.K40fs	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	138_139					activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						ATAAATTCCTCTTTTTTCTGAC	0.282													---	---	---							
Unknown	0	broad.mit.edu	37	21	47425930	47425930	+	IGR	DEL	C	-	-			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr21:47425930delC								COL6A1 (967 upstream) : COL6A2 (92103 downstream)																							gtgggcggggcccggggcaga	0.000													---	---	---							
SERHL2	253190	broad.mit.edu	37	22	42967208	42967211	+	Splice_Site	DEL	AAGT	-	-			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr22:42967208_42967211delAAGT	uc003bcr.2	+	10	833	c.731_splice	c.e10+1	p.K244_splice	SERHL_uc011apm.1_Intron|SERHL2_uc011apn.1_Frame_Shift_Del_p.K261fs|SERHL2_uc010gyz.2_Splice_Site_p.K180_splice|SERHL2_uc010gyy.2_RNA|SERHL2_uc011apo.1_RNA|RRP7B_uc003bcs.2_Intron	NM_014509	NP_055324	Q9H4I8	SEHL2_HUMAN	serine hydrolase-like 2							perinuclear region of cytoplasm|peroxisome	hydrolase activity				0						CCTGTTGATCAAGTAAGTCTGGAC	0.574													---	---	---							
Unknown	0	broad.mit.edu	37	4	9424063	9424065	+	IGR	DEL	CTC	-	-			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:9424063_9424065delCTC								USP17L6P (53269 upstream) : DEFB131 (22195 downstream)																							TATTTCTGTTCTCCTCCTCTTTG	0.448													---	---	---							
Unknown	0	broad.mit.edu	37	4	49236027	49236027	+	IGR	DEL	T	-	-	rs145140129		TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr4:49236027delT								CWH43 (171934 upstream) : None (None downstream)																							CAATGAGCTCTTTGCCAATCA	0.512													---	---	---							
Unknown	0	broad.mit.edu	37	7	47996414	47996416	+	IGR	DEL	ATG	-	-			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chr7:47996414_47996416delATG								PKD1L1 (8377 upstream) : HUS1 (6567 downstream)																							TGATAACCAAatgatgatgatga	0.202													---	---	---							
DDX3X	1654	broad.mit.edu	37	X	41200778	41200778	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HL-7533-01A-11D-2229-08	TCGA-HL-7533-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	fbf8f4a8-be9e-4713-884d-c80ef662d622	db3a90aa-d1c0-4e75-80b4-c1058f469b42	g.chrX:41200778delG	uc004dfe.2	+	4	1048	c.193delG	c.(193-195)GATfs	p.D65fs	DDX3X_uc010nhf.1_Frame_Shift_Del_p.D49fs|DDX3X_uc004dff.2_Frame_Shift_Del_p.D65fs|DDX3X_uc011mkq.1_Frame_Shift_Del_p.D49fs|DDX3X_uc011mkr.1_Frame_Shift_Del_p.D65fs|DDX3X_uc011mks.1_Frame_Shift_Del_p.D65fs|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	65					interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						TTCTAGCAAAGATAAGGATGC	0.368										HNSCC(61;0.18)			---	---	---							
