Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABAT	18	broad.mit.edu	37	16	8844285	8844285	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48443360	48443360	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35693144	35693144	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109644622	109644622	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89392926	89392926	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX3	8310	broad.mit.edu	37	4	8407759	8407759	+	Silent	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOXL	55289	broad.mit.edu	37	2	111691238	111691238	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236908167	236908167	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR3	10096	broad.mit.edu	37	2	114709124	114709124	+	Silent	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42850111	42850111	+	Intron	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106067666	106067666	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5239416	5239416	+	Intron	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43860487	43860487	+	Silent	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73164047	73164047	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147891534	147891534	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGK	55750	broad.mit.edu	37	7	141333840	141333840	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHDC1	27245	broad.mit.edu	37	1	27874554	27874554	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIPL1	23746	broad.mit.edu	37	17	6337463	6337463	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243788174	243788174	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMZ1	155185	broad.mit.edu	37	7	2748319	2748319	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC7	51434	broad.mit.edu	37	12	110825555	110825555	+	Silent	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41526168	41526168	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41563717	41563717	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114275531	114275531	+	Silent	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA6	309	broad.mit.edu	37	5	150483150	150483150	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOL5	80831	broad.mit.edu	37	22	36123064	36123064	+	Silent	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF10L	55160	broad.mit.edu	37	1	17990971	17990971	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF16	27237	broad.mit.edu	37	1	3391185	3391185	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF18	23370	broad.mit.edu	37	19	7532078	7532078	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF37	389337	broad.mit.edu	37	5	148989214	148989214	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF4	50649	broad.mit.edu	37	2	131797798	131797798	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC2	84071	broad.mit.edu	37	6	109233494	109233494	+	Intron	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108199895	108199895	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160129070	160129070	+	Intron	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50279569	50279569	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRIP	84126	broad.mit.edu	37	3	48488523	48488523	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT5	7920	broad.mit.edu	37	6	31669838	31669838	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS7	55212	broad.mit.edu	37	4	122789195	122789195	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165547581	165547581	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129148736	129148736	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCR	613	broad.mit.edu	37	22	23603509	23603509	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BHMT	635	broad.mit.edu	37	5	78426859	78426859	+	Nonsense_Mutation	SNP	G	T	T	rs148233515		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60475334	60475334	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLVRA	644	broad.mit.edu	37	7	43806918	43806918	+	Intron	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP3	651	broad.mit.edu	37	4	81967852	81967852	+	Intron	SNP	A	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP6	654	broad.mit.edu	37	6	7861542	7861542	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRF1	2972	broad.mit.edu	37	14	105692282	105692282	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRP44L	51660	broad.mit.edu	37	6	166779514	166779514	+	Missense_Mutation	SNP	C	A	A	rs139776186	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD12	84464	broad.mit.edu	37	16	3634841	3634841	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100615032	100615032	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf20	25858	broad.mit.edu	37	11	64070923	64070923	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf148	122945	broad.mit.edu	37	14	77888948	77888948	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf149	112849	broad.mit.edu	37	14	59939767	59939767	+	Silent	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf71	146562	broad.mit.edu	37	16	4790184	4790184	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf64	124773	broad.mit.edu	37	17	58506804	58506804	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf98	388381	broad.mit.edu	37	17	36991511	36991511	+	Silent	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf10	25941	broad.mit.edu	37	18	34385560	34385560	+	Intron	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13645087	13645087	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf177	163747	broad.mit.edu	37	1	55279583	55279583	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178489437	178489437	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf152	140894	broad.mit.edu	37	20	34572656	34572656	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf94	128710	broad.mit.edu	37	20	10536779	10536779	+	Intron	SNP	T	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf34	388815	broad.mit.edu	37	21	17443512	17443512	+	RNA	DEL	G	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf30	152405	broad.mit.edu	37	3	118865094	118865094	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41160437	41160437	+	Silent	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf46	254778	broad.mit.edu	37	8	67404639	67404639	+	5'Flank	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2800361	2800361	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53781537	53781537	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201028377	201028377	+	Silent	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC5	57082	broad.mit.edu	37	15	40915482	40915482	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBE1	147372	broad.mit.edu	37	18	57363928	57363928	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128457972	128457972	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCHCR1	54535	broad.mit.edu	37	6	31112700	31112700	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL1	6346	broad.mit.edu	37	17	32687784	32687784	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNF	899	broad.mit.edu	37	16	2499482	2499482	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33266100	33266100	+	Intron	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD53	963	broad.mit.edu	37	1	111441857	111441857	+	3'UTR	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD96	10225	broad.mit.edu	37	3	111342568	111342568	+	Intron	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24505406	24505406	+	Intron	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR5	53841	broad.mit.edu	37	11	617417	617417	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK12	51755	broad.mit.edu	37	17	37618415	37618424	+	Frame_Shift_Del	DEL	AACAGCAGAG	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK14	5218	broad.mit.edu	37	7	90708879	90708879	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM18	729767	broad.mit.edu	37	19	51986168	51986168	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP120	153241	broad.mit.edu	37	5	122737584	122737584	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55853504	55853504	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGA	1081	broad.mit.edu	37	6	87795510	87795510	+	Silent	SNP	C	T	T	rs142673245		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85233802	85233802	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	240070932	240070932	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB1	1140	broad.mit.edu	37	17	7357633	7357633	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLLU1OS	574016	broad.mit.edu	37	12	92818631	92818631	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87680187	87680187	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNPY1	285888	broad.mit.edu	37	7	155299839	155299840	+	Intron	DNP	GG	TT	TT			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNST	163882	broad.mit.edu	37	1	246797932	246797932	+	Intron	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1414443	1414443	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125530480	125530480	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103404446	103404446	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A1	1277	broad.mit.edu	37	17	48267568	48267568	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139662110	139662110	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109861882	109861882	+	Intron	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189871100	189871100	+	Silent	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110866242	110866242	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ6	51004	broad.mit.edu	37	14	74416829	74416829	+	5'Flank	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPD	1362	broad.mit.edu	37	17	28778672	28778672	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB1	64506	broad.mit.edu	37	15	83215263	83215263	+	Silent	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN1	1369	broad.mit.edu	37	10	101814119	101814119	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2776024	2776024	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRX	1406	broad.mit.edu	37	19	48342701	48342701	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2820770	2820770	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRNP3	80034	broad.mit.edu	37	2	166532856	166532856	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTH	1491	broad.mit.edu	37	1	70904862	70904862	+	3'UTR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117359591	117359591	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	48993903	48993903	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBASC3	220002	broad.mit.edu	37	11	61124041	61124059	+	Frame_Shift_Del	DEL	CTGGGTGCCAGTTGAACAT	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBB	1536	broad.mit.edu	37	X	37652910	37652910	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F22	126410	broad.mit.edu	37	19	15626343	15626343	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	15989716	15989716	+	Silent	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50592285	50592285	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50592527	50592527	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1B	64858	broad.mit.edu	37	1	114449871	114449871	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN5	84516	broad.mit.edu	37	16	23669925	23669925	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	532472	532472	+	Splice_Site	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG4	1742	broad.mit.edu	37	17	7093987	7093987	+	3'UTR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79584087	79584087	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196671525	196671525	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE1L3	1776	broad.mit.edu	37	3	58196650	58196650	+	5'UTR	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117744481	117744481	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	50757036	50757036	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	62941022	62941022	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63048887	63048887	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF2	5977	broad.mit.edu	37	11	65107996	65107996	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD1	1812	broad.mit.edu	37	5	174870043	174870043	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56358869	56358869	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS3L	56931	broad.mit.edu	37	19	5789413	5789413	+	Silent	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71892550	71892550	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158422408	158422408	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECEL1	9427	broad.mit.edu	37	2	233347810	233347810	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD6	955	broad.mit.edu	37	20	25187965	25187965	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EOMES	8320	broad.mit.edu	37	3	27759217	27759217	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132490798	132490798	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC6	2074	broad.mit.edu	37	10	50667200	50667200	+	Silent	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23718140	23718140	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23718374	23718374	+	Silent	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6224937	6224937	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131521154	131521154	+	Silent	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129B	64855	broad.mit.edu	37	9	130272356	130272356	+	Intron	DEL	C	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM131B	9715	broad.mit.edu	37	7	143053877	143053878	+	Frame_Shift_Ins	INS	-	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM149A	25854	broad.mit.edu	37	4	187084174	187084174	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175525844	175525844	+	Intron	SNP	A	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40B	57464	broad.mit.edu	37	7	129099251	129099251	+	Intron	SNP	A	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177250096	177250097	+	Frame_Shift_Ins	INS	-	C	C	rs142394323	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190203536	190203536	+	Silent	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCL	55120	broad.mit.edu	37	2	58468286	58468286	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD5	60493	broad.mit.edu	37	20	3127954	3127954	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92495049	92495049	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL2	25827	broad.mit.edu	37	3	33420148	33420148	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR4	2264	broad.mit.edu	37	5	176517431	176517431	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLAD1	80308	broad.mit.edu	37	1	154956053	154956053	+	5'UTR	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84607299	84607299	+	Silent	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28592864	28592864	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240334612	240334612	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN1	8456	broad.mit.edu	37	17	26851370	26851371	+	Intron	INS	-	CTT	CTT	rs138715148	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29622933	29622933	+	5'Flank	SNP	A	G	G	rs77098071		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37692711	37692711	+	Missense_Mutation	SNP	C	G	G	rs142418624		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD2	143162	broad.mit.edu	37	10	49450414	49450414	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD1	5348	broad.mit.edu	37	19	35631042	35631042	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYTTD1	84248	broad.mit.edu	37	3	197500909	197500909	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46314442	46314442	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRD	2563	broad.mit.edu	37	1	1960873	1960873	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30885981	30885981	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89662952	89662953	+	Frame_Shift_Ins	INS	-	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF15	9518	broad.mit.edu	37	19	18499574	18499574	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP8	155038	broad.mit.edu	37	7	150171185	150171185	+	Silent	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIPR1	11010	broad.mit.edu	37	12	75884265	75884265	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP2R	9340	broad.mit.edu	37	17	9791285	9791285	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMIP	51291	broad.mit.edu	37	19	19750925	19750925	+	Missense_Mutation	SNP	G	A	A	rs143480494		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20329820	20329820	+	Intron	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR107	57720	broad.mit.edu	37	9	132863626	132863626	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135432428	135432428	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135496185	135496186	+	Intron	DNP	CC	AA	AA			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR156	165829	broad.mit.edu	37	3	119886829	119886829	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX5	2880	broad.mit.edu	37	6	28499529	28499529	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL1	29841	broad.mit.edu	37	2	10099004	10099004	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102124642	102124642	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37315869	37315869	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13764833	13764833	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104385810	104385810	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM6	2916	broad.mit.edu	37	5	178410147	178410147	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC5	10014	broad.mit.edu	37	17	42169750	42169750	+	Silent	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93220277	93220277	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC5	51191	broad.mit.edu	37	4	89422058	89422058	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS2ST1	9653	broad.mit.edu	37	1	87380943	87380943	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR6	3362	broad.mit.edu	37	1	20005133	20005133	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS2	55699	broad.mit.edu	37	1	220267786	220267786	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	95015732	95015732	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICOS	29851	broad.mit.edu	37	2	204824219	204824219	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIH1	64135	broad.mit.edu	37	2	163167477	163167477	+	Intron	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA6	3443	broad.mit.edu	37	9	21350974	21350974	+	5'Flank	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27670357	27670357	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17A	3605	broad.mit.edu	37	6	52051373	52051374	+	Intron	DNP	GG	TT	TT			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17A	3605	broad.mit.edu	37	6	52054119	52054119	+	3'UTR	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAP	3556	broad.mit.edu	37	3	190347361	190347361	+	Intron	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGC	56269	broad.mit.edu	37	19	44222905	44222905	+	Silent	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX4	50805	broad.mit.edu	37	5	1881900	1881900	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH4	3700	broad.mit.edu	37	3	52858333	52858333	+	Splice_Site	SNP	T	G	G	rs113532241		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4735185	4735185	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24428074	24428074	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2B	8850	broad.mit.edu	37	3	20164279	20164279	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63483638	63483638	+	Silent	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH6	81033	broad.mit.edu	37	17	61619723	61619723	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163241275	163241275	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNS2	3788	broad.mit.edu	37	8	99440446	99440446	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196398835	196398835	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53230770	53230770	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142641549	142641549	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0368	23392	broad.mit.edu	37	9	114176921	114176921	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43888542	43888542	+	5'Flank	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57181002	57181002	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57187351	57187351	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF18B	146909	broad.mit.edu	37	17	43010183	43010183	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200957785	200957785	+	Intron	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57966319	57966319	+	Intron	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL10	317719	broad.mit.edu	37	17	40003692	40003692	+	Intron	SNP	A	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL34	257240	broad.mit.edu	37	X	21675972	21675972	+	5'UTR	DEL	G	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL38	340359	broad.mit.edu	37	8	124664403	124664403	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK7	5650	broad.mit.edu	37	19	51483127	51483127	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP21-2	337978	broad.mit.edu	37	21	32119384	32119384	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143676236	143676236	+	Silent	SNP	T	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LACRT	90070	broad.mit.edu	37	12	55025579	55025579	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112452206	112452206	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCLAT1	253558	broad.mit.edu	37	2	30755914	30755914	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48950635	48950635	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LLGL2	3993	broad.mit.edu	37	17	73551952	73551953	+	Intron	DEL	AG	-	-	rs77073190		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165180080	165180080	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45635909	45635909	+	Intron	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45652518	45652518	+	5'Flank	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100288778	100288778	broad.mit.edu	37	12	73315	73315	+	5'Flank	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC651250	651250	broad.mit.edu	37	17	66145844	66145844	+	Intron	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653544	653544	broad.mit.edu	37	4	190989660	190989660	+	5'Flank	DEL	C	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62598758	62598758	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16A	55604	broad.mit.edu	37	6	25610440	25610440	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC1	55227	broad.mit.edu	37	6	53764517	53764517	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70446281	70446281	+	Intron	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTM2	654429	broad.mit.edu	37	12	1943779	1943779	+	Silent	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33335901	33335901	+	Intron	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74992709	74992709	+	Intron	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUC7L3	51747	broad.mit.edu	37	17	48823140	48823140	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB6	158809	broad.mit.edu	37	X	26211902	26211903	+	Splice_Site	DNP	GG	TT	TT			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1C1	57134	broad.mit.edu	37	1	26080122	26080122	+	Intron	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAOB	4129	broad.mit.edu	37	X	43702885	43702885	+	Intron	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71501080	71501080	+	3'UTR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN2	4147	broad.mit.edu	37	8	99016072	99016072	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC2R	4158	broad.mit.edu	37	18	13884609	13884609	+	3'UTR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM7	4176	broad.mit.edu	37	7	99696705	99696706	+	Frame_Shift_Ins	INS	-	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126784720	126784720	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS1	4211	broad.mit.edu	37	2	66798643	66798643	+	3'UTR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX2	4223	broad.mit.edu	37	7	15651974	15651974	+	3'UTR	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT5D1	196074	broad.mit.edu	37	11	28308927	28308927	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1247	100302145	broad.mit.edu	37	14	102026666	102026666	+	RNA	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR363	574031	broad.mit.edu	37	X	133304317	133304317	+	5'Flank	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR622	693207	broad.mit.edu	37	13	90883003	90883003	+	5'Flank	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129902901	129902901	+	Silent	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL23	6150	broad.mit.edu	37	11	1977658	1977658	+	3'UTR	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH3	4437	broad.mit.edu	37	5	80021292	80021292	+	Missense_Mutation	SNP	G	T	T	rs144798521	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1E	4493	broad.mit.edu	37	16	56660200	56660200	+	Intron	SNP	C	T	T	rs143750516	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121458855	121458855	+	Intron	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR12	54545	broad.mit.edu	37	5	32229773	32229773	+	3'UTR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9068625	9068625	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10451096	10451096	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23885394	23885394	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26351348	26351348	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95121452	95121452	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95137204	95137204	+	Intron	SNP	A	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89910923	89910923	+	Intron	SNP	T	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL1	10004	broad.mit.edu	37	11	64821756	64821756	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101735223	101735224	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145509135	145509135	+	Intron	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21104601	21104606	+	In_Frame_Del	DEL	TTACAC	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152426724	152426724	+	Silent	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEIL1	79661	broad.mit.edu	37	15	75641515	75641515	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52481179	52481179	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKX2-5	1482	broad.mit.edu	37	5	172659670	172659670	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKX3-2	579	broad.mit.edu	37	4	13544075	13544075	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173993351	173993351	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR0B2	8431	broad.mit.edu	37	1	27240194	27240194	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5DC3	51559	broad.mit.edu	37	12	104174051	104174051	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	154030838	154030838	+	Intron	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123787312	123787312	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50946145	50946145	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390272	158390272	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57995561	57995561	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13D1	286365	broad.mit.edu	37	9	107457252	107457252	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14C36	127066	broad.mit.edu	37	1	248512355	248512355	+	Silent	SNP	G	C	C	rs146830794		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1A1	8383	broad.mit.edu	37	17	3119264	3119264	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1K1	392392	broad.mit.edu	37	9	125563312	125563312	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A14	135941	broad.mit.edu	37	7	143826247	143826247	+	Silent	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A5	393046	broad.mit.edu	37	7	143748183	143748183	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B3	442184	broad.mit.edu	37	6	29054376	29054376	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248202145	248202145	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S2	219431	broad.mit.edu	37	11	55419045	55419046	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX1	5023	broad.mit.edu	37	17	3819547	3819547	+	5'UTR	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1P2	728773	broad.mit.edu	37	2	147346121	147346121	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC3	5042	broad.mit.edu	37	13	25670895	25670895	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176769067	176769067	+	Intron	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91134263	91134263	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140579492	140579492	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140554050	140554050	+	Missense_Mutation	SNP	C	T	T	rs148889209		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB9	56127	broad.mit.edu	37	5	140568110	140568110	+	Missense_Mutation	SNP	G	T	T	rs141971179		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140744543	140744543	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDP1	200373	broad.mit.edu	37	2	120383238	120383238	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55129754	55129754	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEBP1	5037	broad.mit.edu	37	12	118577338	118577338	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PET112L	5188	broad.mit.edu	37	4	152624922	152624922	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHGDH	26227	broad.mit.edu	37	1	120263891	120263891	+	Silent	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47697718	47697718	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIRT	644139	broad.mit.edu	37	17	10728733	10728733	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL2	55124	broad.mit.edu	37	8	22147484	22147484	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110464253	110464254	+	Intron	INS	-	T	T	rs149400770	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8720888	8720888	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161152090	161152090	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208213273	208213273	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24844572	24844572	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121213344	121213344	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3G	10622	broad.mit.edu	37	5	89802489	89802489	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76793378	76793378	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R7	5510	broad.mit.edu	37	2	242098539	242098539	+	Intron	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R4	5524	broad.mit.edu	37	9	131885508	131885508	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRCC	5546	broad.mit.edu	37	1	156761675	156761675	+	Intron	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527673	23527673	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68956798	68956798	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF38A	84950	broad.mit.edu	37	1	52878240	52878240	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF40A	55660	broad.mit.edu	37	2	153519649	153519649	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR23B	389151	broad.mit.edu	37	3	138738935	138738935	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS12	8492	broad.mit.edu	37	4	119217009	119217009	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS38	339501	broad.mit.edu	37	1	228004983	228004983	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43698862	43698862	+	Intron	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43412072	43412072	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43522877	43522878	+	Intron	INS	-	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43258471	43258471	+	Silent	SNP	T	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN3	5774	broad.mit.edu	37	9	112141905	112141905	+	Nonsense_Mutation	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8518211	8518211	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41101011	41101011	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41514452	41514452	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYCR2	29920	broad.mit.edu	37	1	226108231	226108231	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9304936	9304936	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRICH1	54870	broad.mit.edu	37	3	49069463	49069463	+	Intron	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174671252	174671252	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85776840	85776840	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114404165	114404165	+	5'UTR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H2	54542	broad.mit.edu	37	9	125613500	125613500	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCOR2	283248	broad.mit.edu	37	11	63681311	63681311	+	Intron	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103202196	103202196	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO1	57455	broad.mit.edu	37	19	1816518	1816518	+	Missense_Mutation	SNP	C	T	T	rs142299409		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL1	23179	broad.mit.edu	37	1	183675640	183675640	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RINT1	60561	broad.mit.edu	37	7	105173187	105173187	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77651390	77651390	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55541741	55541741	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55542007	55542007	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10L	140801	broad.mit.edu	37	14	47120353	47120353	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL15	6138	broad.mit.edu	37	3	23960893	23960893	+	Silent	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS24	6229	broad.mit.edu	37	10	79793825	79793825	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA6	27330	broad.mit.edu	37	X	83411048	83411048	+	Intron	DEL	A	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGC	64121	broad.mit.edu	37	1	39305209	39305209	+	3'UTR	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60074059	60074059	+	Silent	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4IP1	84816	broad.mit.edu	37	6	107031108	107031108	+	Intron	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4	57142	broad.mit.edu	37	2	55200231	55200231	+	3'UTR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67684536	67684536	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67801779	67801779	+	Splice_Site	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93088147	93088147	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33873624	33873624	+	Intron	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAI	286205	broad.mit.edu	37	9	127905022	127905022	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCLT1	132320	broad.mit.edu	37	4	129925073	129925073	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167133845	167133845	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167144879	167144879	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1G	6340	broad.mit.edu	37	16	23224089	23224089	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRIB	23513	broad.mit.edu	37	8	144885746	144885746	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDAD1	55153	broad.mit.edu	37	4	76892496	76892496	+	Intron	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4215261	4215261	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDSL	113675	broad.mit.edu	37	12	113873352	113873352	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13856519	13856519	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95090004	95090004	+	Silent	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESN3	143686	broad.mit.edu	37	11	94924520	94924520	+	Intron	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN1	94081	broad.mit.edu	37	5	174936182	174936182	+	Silent	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGTA	6449	broad.mit.edu	37	19	2765324	2765324	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF7	57823	broad.mit.edu	37	1	160718358	160718358	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A6	9990	broad.mit.edu	37	15	34610759	34610759	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15061009	15061009	+	Nonstop_Mutation	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A4	6583	broad.mit.edu	37	5	131647850	131647850	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118596813	118596813	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32890601	32890601	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32890968	32890968	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A6	10479	broad.mit.edu	37	X	135112287	135112287	+	Intron	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21391919	21391919	+	Silent	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168176450	168176450	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18882139	18882139	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25301920	25301920	+	Intron	DEL	C	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOLH	6650	broad.mit.edu	37	16	600778	600779	+	Intron	INS	-	C	C	rs146137561	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123599549	123599549	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220338412	220338412	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPPL2A	84888	broad.mit.edu	37	15	51017504	51017504	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158624529	158624529	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2807381	2807381	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP2	23635	broad.mit.edu	37	5	80738414	80738414	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP2	23635	broad.mit.edu	37	5	80769407	80769407	+	Intron	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSFA2	6744	broad.mit.edu	37	2	182760624	182760624	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149495277	149495277	+	Intron	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149519646	149519646	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4025386	4025386	+	Intron	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ1	8867	broad.mit.edu	37	21	34004174	34004174	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70608725	70608725	+	Intron	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF23	150921	broad.mit.edu	37	2	27375674	27375674	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHHL1	126637	broad.mit.edu	37	1	152058170	152058170	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD3	7005	broad.mit.edu	37	6	35445092	35445092	+	Silent	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65146829	65146829	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TENC1	23371	broad.mit.edu	37	12	53452954	53452954	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP4	7023	broad.mit.edu	37	16	4312298	4312298	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFRC	7037	broad.mit.edu	37	3	195798322	195798322	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC5	8563	broad.mit.edu	37	22	29945181	29945181	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRA	7067	broad.mit.edu	37	17	38242898	38242898	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMP1	7076	broad.mit.edu	37	X	47444781	47444781	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98188477	98188477	+	Silent	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44403455	44403455	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126004076	126004076	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15427303	15427303	+	Intron	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM55A	55529	broad.mit.edu	37	8	92033633	92033633	+	Splice_Site	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19698600	19698600	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIP1	10318	broad.mit.edu	37	5	150410427	150410427	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6A	27327	broad.mit.edu	37	16	24788604	24788604	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS4	84951	broad.mit.edu	37	17	38644981	38644981	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L1	10040	broad.mit.edu	37	17	53024708	53024708	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1	10043	broad.mit.edu	37	22	35723405	35723405	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP1MT	116447	broad.mit.edu	37	8	144444877	144444877	+	5'Flank	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53I3	9540	broad.mit.edu	37	2	24307210	24307234	+	Intron	DEL	ACAGGGCAGGGCAGGGCAGGACAGG	-	-	rs72049316	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	19997123	19997123	+	3'UTR	SNP	T	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10944559	10944559	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPX2	22974	broad.mit.edu	37	20	30370042	30370042	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM27	5987	broad.mit.edu	37	6	28876957	28876957	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM71	131405	broad.mit.edu	37	3	32933097	32933097	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM9	114088	broad.mit.edu	37	14	51475811	51475811	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72938100	72938100	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122846200	122846200	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31329913	31329913	+	Splice_Site	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45826567	45826567	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81498719	81498719	+	Intron	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ1	10194	broad.mit.edu	37	18	72999184	72999184	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94839405	94839405	+	Intron	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC39C	125488	broad.mit.edu	37	18	21660779	21660779	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL4	9654	broad.mit.edu	37	2	219603497	219603497	+	Silent	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBG1	7283	broad.mit.edu	37	17	40766499	40766499	+	Intron	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYSND1	219743	broad.mit.edu	37	10	71905131	71905131	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3A	53347	broad.mit.edu	37	21	43838767	43838767	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2J1	51465	broad.mit.edu	37	6	90039406	90039406	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2O	63893	broad.mit.edu	37	17	74387720	74387720	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBTFL1	642623	broad.mit.edu	37	11	89819579	89819579	+	Silent	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70361226	70361226	+	Silent	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNCX	340260	broad.mit.edu	37	7	1273142	1273142	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113700072	113700072	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8988972	8988972	+	Silent	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30180059	30180059	+	IGR	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31006210	31006210	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38978061	38978061	+	IGR	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	39006243	39006244	+	IGR	DNP	TG	CT	CT			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42392740	42392740	+	IGR	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124085579	124085579	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27911693	27911694	+	IGR	DNP	CC	AA	AA			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29747417	29747417	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48930294	48930294	+	IGR	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49007521	49007521	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55136438	55136438	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55198099	55198099	+	IGR	DEL	A	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55259341	55259341	+	IGR	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	10658467	10658467	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68947658	68947658	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	90147618	90147618	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59584565	59584565	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19411796	19411796	+	IGR	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20146473	20146473	+	IGR	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147177	20147177	+	IGR	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96985415	96985415	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	27145568	27145568	+	IGR	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32178243	32178243	+	IGR	DEL	C	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32399795	32399795	+	IGR	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33396061	33396061	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13919825	13919825	+	IGR	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14221331	14221331	+	IGR	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14361599	14361599	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	18762889	18762889	+	IGR	DEL	G	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36988518	36988518	+	IGR	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54234366	54234366	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146585251	146585251	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149060043	149060043	+	IGR	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	162415527	162415527	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164326150	164326150	+	IGR	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28572981	28572981	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31720556	31720556	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9834924	9834924	+	IGR	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349524	16349524	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17340641	17340641	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	30442439	30442439	+	IGR	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106961754	106961754	+	IGR	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4562146	4562146	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81425277	81425277	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91873066	91873066	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	178211383	178211384	+	IGR	DNP	AG	CC	CC			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180041774	180041774	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	100912650	100912650	+	IGR	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	130060278	130060278	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	13638066	13638066	+	IGR	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180542281	180542281	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23304646	23304646	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910574	25910574	+	IGR	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84760665	84760665	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99715176	99715176	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	126578980	126578980	+	IGR	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27179154	27179154	+	IGR	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27491412	27491412	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57842347	57842347	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141491219	141491219	+	IGR	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145281778	145281778	+	IGR	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	23603445	23603445	+	IGR	SNP	G	A	A	rs137936297	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56356169	56356169	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665856	56665856	+	IGR	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56699655	56699655	+	IGR	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57005177	57005177	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63475581	63475581	+	IGR	DEL	G	-	-			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63563145	63563145	+	IGR	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63930374	63930374	+	IGR	SNP	A	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	7119286	7119286	+	IGR	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88195445	88195445	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48114596	48114596	+	IGR	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90351074	90351074	+	IGR	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	45376950	45376951	+	IGR	DNP	CC	AA	AA			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7477149	7477149	+	IGR	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81652623	81652623	+	IGR	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	131063624	131063624	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	133407026	133407026	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134811589	134811589	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	140785512	140785513	+	IGR	INS	-	CTTCC	CTTCC			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151296007	151296007	+	IGR	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26178797	26178797	+	IGR	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	7618462	7618462	+	IGR	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79829311	79829311	+	IGR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPAR	63894	broad.mit.edu	37	14	77919802	77919802	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79910762	79910762	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100733412	100733412	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62239393	62239393	+	Silent	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12428682	12428682	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA5A	4013	broad.mit.edu	37	11	123995132	123995132	+	Intron	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61049184	61049184	+	Intron	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR66	144406	broad.mit.edu	37	12	122405848	122405848	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR69	164781	broad.mit.edu	37	2	228786284	228786284	+	Intron	SNP	A	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	53992108	53992108	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRN	7486	broad.mit.edu	37	8	30999265	30999265	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56362866	56362866	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED4	9889	broad.mit.edu	37	22	50280790	50280790	+	Silent	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC4	55146	broad.mit.edu	37	7	6628084	6628084	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77763196	77763196	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147114235	147114235	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT5	55954	broad.mit.edu	37	22	30144421	30144421	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44798683	44798684	+	Intron	INS	-	AA	AA	rs71563954		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF174	7727	broad.mit.edu	37	16	3451893	3451893	+	5'UTR	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF268	10795	broad.mit.edu	37	12	133727658	133727658	+	Translation_Start_Site	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49671383	49671383	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF430	80264	broad.mit.edu	37	19	21239980	21239980	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF48	197407	broad.mit.edu	37	16	30409831	30409831	+	Silent	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF578	147660	broad.mit.edu	37	19	52976588	52976588	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF592	9640	broad.mit.edu	37	15	85341292	85341292	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22363671	22363671	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF711	7552	broad.mit.edu	37	X	84510681	84510681	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63679663	63679663	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF83	55769	broad.mit.edu	37	19	53117543	53117543	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF860	344787	broad.mit.edu	37	3	32031881	32031881	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP	11055	broad.mit.edu	37	7	50070681	50070681	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30926700	30926700	+	RNA	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80750412	80750412	+	Intron	SNP	G	T	T	rs112557722		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22392369	22392369	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23019579	23019579	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	31290898	31290898	+	RNA	SNP	T	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22473191	22473191	+	RNA	SNP	C	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25488821	25488821	+	Intron	SNP	C	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37213234	37213235	+	5'Flank	INS	-	T	T	rs148158521	by1000genomes	TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23328612	23328612	+	RNA	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143223212	143223212	+	Intron	SNP	A	G	G			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89346079	89346079	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90044060	90044060	+	Intron	SNP	A	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90139390	90139390	+	RNA	SNP	G	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	12299781	12299781	+	RNA	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142119819	142119819	+	Intron	SNP	G	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142119838	142119838	+	Intron	SNP	C	T	T			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64526841	64526841	+	Intron	SNP	A	C	C			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69634747	69634747	+	RNA	SNP	T	A	A			TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
