Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
EFNA4	1945	broad.mit.edu	36	1	153308043	153308043	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	153308043	153308043	EFNA4	1	T	T	C	63
DUSP27	92235	broad.mit.edu	36	1	165362394	165362394	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	165362394	165362394	DUSP27	1	G	G	A	38
NLRP3	114548	broad.mit.edu	36	1	245654785	245654785	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	245654785	245654785	NLRP3	1	G	G	A	42
UPF2	26019	broad.mit.edu	36	10	12041243	12041243	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	12041243	12041243	UPF2	10	C	C	T	19
TET1	80312	broad.mit.edu	36	10	70121233	70121233	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	70121233	70121233	TET1	10	G	G	A	46
CCAR1	55749	broad.mit.edu	36	10	70217784	70217784	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70217784	70217784	CCAR1	10	C	C	T	32
ZNF511	118472	broad.mit.edu	36	10	134973378	134973378	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	134973378	134973378	ZNF511	10	C	C	T	25
SHISA2	387914	broad.mit.edu	36	13	25518663	25518663	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	25518663	25518663	SHISA2	13	C	C	T	23
CGNL1	84952	broad.mit.edu	36	15	55517809	55517809	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55517809	55517809	CGNL1	15	C	C	T	21
MCTP2	55784	broad.mit.edu	36	15	92711912	92711912	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	92711912	92711912	MCTP2	15	G	G	T	43
DCUN1D3	123879	broad.mit.edu	36	16	20778769	20778769	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	20778769	20778769	DCUN1D3	16	C	C	T	22
NLRC5	84166	broad.mit.edu	36	16	55627576	55627576	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	55627576	55627576	NLRC5	16	G	G	A	46
TUBB3	10381	broad.mit.edu	36	16	88529263	88529263	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	88529263	88529263	TUBB3	16	C	C	T	23
ITGAE	3682	broad.mit.edu	36	17	3598010	3598010	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3598010	3598010	ITGAE	17	G	G	A	39
TP53	7157	broad.mit.edu	36	17	7517622	7517622	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	7517622	7517622	TP53	17	G	G	A	47
DHX8	1659	broad.mit.edu	36	17	38925628	38925628	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38925628	38925628	DHX8	17	G	G	A	37
CBX8	57332	broad.mit.edu	36	17	75383403	75383403	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	75383403	75383403	CBX8	17	G	G	A	43
MEP1B	4225	broad.mit.edu	36	18	28041333	28041333	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	28041333	28041333	MEP1B	18	C	C	T	17
C19orf47	126526	broad.mit.edu	36	19	45526256	45526256	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	45526256	45526256	C19orf47	19	G	G	A	41
ZNF331	55422	broad.mit.edu	36	19	58772204	58772204	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	58772204	58772204	ZNF331	19	G	G	A	43
EGR4	1961	broad.mit.edu	36	2	73372938	73372938	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73372938	73372938	EGR4	2	C	C	T	27
SLC4A5	57835	broad.mit.edu	36	2	74313134	74313134	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74313134	74313134	SLC4A5	2	G	G	A	35
SCN2A	6326	broad.mit.edu	36	2	165907090	165907090	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	165907090	165907090	SCN2A	2	G	G	T	33
FAM171B	165215	broad.mit.edu	36	2	187324232	187324232	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	187324232	187324232	FAM171B	2	G	G	C	36
PLTP	5360	broad.mit.edu	36	20	43971666	43971666	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	43971666	43971666	PLTP	20	A	A	C	7
CD40	958	broad.mit.edu	36	20	44184735	44184735	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	44184735	44184735	CD40	20	G	G	A	37
SON	6651	broad.mit.edu	36	21	33847128	33847128	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33847128	33847128	SON	21	G	G	A	36
BAP1	8314	broad.mit.edu	36	3	52415413	52415413	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52415413	52415413	BAP1	3	G	G	A	39
CRIPAK	285464	broad.mit.edu	36	4	1379118	1379118	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	1379118	1379118	CRIPAK	4	G	G	A	40
THAP9	79725	broad.mit.edu	36	4	84057373	84057373	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	84057373	84057373	THAP9	4	T	T	C	57
PLA2G12A	81579	broad.mit.edu	36	4	110859322	110859322	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	110859322	110859322	PLA2G12A	4	G	G	A	39
MAB21L2	10586	broad.mit.edu	36	4	151724424	151724424	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	151724424	151724424	MAB21L2	4	C	C	A	18
KIF2A	3796	broad.mit.edu	36	5	61704091	61704091	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	61704091	61704091	KIF2A	5	C	C	T	32
PCDHA13	56136	broad.mit.edu	36	5	140242751	140242751	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	140242751	140242751	PCDHA13	5	C	C	T	19
HIST1H2BD	3017	broad.mit.edu	36	6	26266441	26266441	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	26266441	26266441	HIST1H2BD	6	C	C	G	28
ZFP57	346171	broad.mit.edu	36	6	29748981	29748981	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	29748981	29748981	ZFP57	6	T	T	G	54
MAPK14	1432	broad.mit.edu	36	6	36103942	36103942	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	36103942	36103942	MAPK14	6	G	G	C	42
OPRM1	4988	broad.mit.edu	36	6	154452831	154452831	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	154452831	154452831	OPRM1	6	C	C	T	25
TNS3	64759	broad.mit.edu	36	7	47417873	47417873	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	47417873	47417873	TNS3	7	G	G	A	47
AKAP9	10142	broad.mit.edu	36	7	91547318	91547318	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	91547318	91547318	AKAP9	7	A	A	T	2
ORAI2	80228	broad.mit.edu	36	7	101866527	101866527	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101866527	101866527	ORAI2	7	C	C	T	32
SNTG1	54212	broad.mit.edu	36	8	51611850	51611850	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	51611850	51611850	SNTG1	8	G	G	A	44
ZNF7	7553	broad.mit.edu	36	8	146038866	146038866	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	146038866	146038866	ZNF7	8	C	C	T	26
ACRC	93953	broad.mit.edu	36	X	70740618	70740618	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01	TCGA-13-0899-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70740618	70740618	ACRC	23	G	G	A	37
