Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CHD4	1108	genome.wustl.edu	36	12	6571444	6571444	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	6571444	6571444	CHD4	12	G	G	A	36
TP53	7157	genome.wustl.edu	36	17	7518295	7518295	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7518295	7518295	TP53	17	C	C	A	17
TLR8	51311	genome.wustl.edu	36	X	12848802	12848802	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	12848802	12848802	TLR8	23	A	A	T	6
BRD4	23476	genome.wustl.edu	36	19	15237429	15237429	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	15237429	15237429	BRD4	19	C	C	G	23
MPP7	143098	genome.wustl.edu	36	10	28448650	28448650	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	28448650	28448650	MPP7	10	C	C	G	30
ZNF658	26149	genome.wustl.edu	36	9	40763969	40763969	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	40763969	40763969	ZNF658	9	C	C	T	22
ZBP1	81030	genome.wustl.edu	36	20	55624752	55624752	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	55624752	55624752	ZBP1	20	A	A	C	7
KCNH5	27133	genome.wustl.edu	36	14	62486626	62486626	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	62486626	62486626	KCNH5	14	C	C	T	23
CILP	8483	genome.wustl.edu	36	15	63277777	63277777	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	63277777	63277777	CILP	15	T	T	A	59
SYT12	91683	genome.wustl.edu	36	11	66567861	66567861	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	66567861	66567861	SYT12	11	G	G	T	34
CCAR1	55749	genome.wustl.edu	36	10	70166669	70166669	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	70166669	70166669	CCAR1	10	T	T	C	56
C10orf35	219738	genome.wustl.edu	36	10	71062718	71062718	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	71062718	71062718	C10orf35	10	C	C	A	23
MBTPS1	8720	genome.wustl.edu	36	16	82672933	82672933	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	82672933	82672933	MBTPS1	16	G	G	C	45
ENSG00000204562	0	genome.wustl.edu	36	9	83722917	83722917	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	83722917	83722917	ENSG00000204562	9	A	A	C	15
SNRNP200	23020	genome.wustl.edu	36	2	96332777	96332777	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	96332777	96332777	SNRNP200	2	C	C	G	24
OR5H6	79295	genome.wustl.edu	36	3	99466357	99466357	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	99466357	99466357	OR5H6	3	T	T	C	62
MUC17	140453	genome.wustl.edu	36	7	100473717	100473717	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	100473717	100473717	MUC17	7	A	A	C	6
PKD2L1	9033	genome.wustl.edu	36	10	102049456	102049456	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	102049456	102049456	PKD2L1	10	C	C	A	30
THOC2	57187	genome.wustl.edu	36	X	122588069	122588069	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	122588069	122588069	THOC2	23	G	G	T	48
MRRF	92399	genome.wustl.edu	36	9	124073039	124073039	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	124073039	124073039	MRRF	9	C	C	T	25
DDX25	29118	genome.wustl.edu	36	11	125292231	125292231	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	125292231	125292231	DDX25	11	G	G	C	33
IGSF1	3547	genome.wustl.edu	36	X	130236275	130236275	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	130236275	130236275	IGSF1	23	G	G	C	35
PLEKHB2	55041	genome.wustl.edu	36	2	131620728	131620728	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	131620728	131620728	PLEKHB2	2	A	A	T	16
NUP214	8021	genome.wustl.edu	36	9	133040820	133040820	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	133040820	133040820	NUP214	9	C	C	G	29
C9orf171		genome.wustl.edu	36	9	134364726	134364726	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	134364726	134364726	C9orf171	9	C	C	T	23
SV2A	9900	genome.wustl.edu	36	1	148151531	148151531	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	148151531	148151531	SV2A	1	G	G	A	42
PDE6A	5145	genome.wustl.edu	36	5	149304423	149304423	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	149304423	149304423	PDE6A	5	C	C	A	31
CSAG1	158511	genome.wustl.edu	36	X	151659815	151659815	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	151659815	151659815	CSAG1	23	G	G	T	35
CLIC2	1193	genome.wustl.edu	36	X	154181291	154181291	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	154181291	154181291	CLIC2	23	C	C	T	18
SCN9A	6335	genome.wustl.edu	36	2	166837176	166837176	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	166837176	166837176	SCN9A	2	C	C	T	23
TTN	7273	genome.wustl.edu	36	2	179139089	179139089	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	179139089	179139089	TTN	2	C	C	G	20
CACNA1E	777	genome.wustl.edu	36	1	179974914	179974914	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	179974914	179974914	CACNA1E	1	C	C	T	18
EIF2B5	8893	genome.wustl.edu	36	3	185343261	185343261	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	185343261	185343261	EIF2B5	3	G	G	A	41
KCNT2	343450	genome.wustl.edu	36	1	194665328	194665328	+	Splice_Site_SNP	SNP	A	A	T	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	194665328	194665328	KCNT2	1	A	A	T	14
ACAP2	23527	genome.wustl.edu	36	3	196494311	196494311	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	196494311	196494311	ACAP2	3	G	G	A	38
NUMA1	4926	genome.wustl.edu	36	11	71404009	71404023	+	In_Frame_Del	DEL	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	-	novel	Unknown	TCGA-13-1412-01	TCGA-13-1412-10	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	-	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	In_Frame_Del	DEL	71404009	71404023	NUMA1	11	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	-	30
FLG	2312	genome.wustl.edu	36	1	150544733	150544733	+	Missense_Mutation	SNP	C	C	G		Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	G	C	C	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	150544733	150544733	FLG	1	C	C	G	24
KIAA1755	85449	genome.wustl.edu	36	20	36274961	36274961	+	Missense_Mutation	SNP	C	C	G		Unknown	TCGA-13-1412-01	TCGA-13-1412-10	C	C	C	G	C	C	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	36274961	36274961	KIAA1755	20	C	C	G	28
IRAK1	3654	genome.wustl.edu	36	X	152938100	152938100	+	Missense_Mutation	SNP	G	G	A		Unknown	TCGA-13-1412-01	TCGA-13-1412-10	G	G	G	A	G	G	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	152938100	152938100	IRAK1	23	G	G	A	39
