Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2M	2	broad.mit.edu	37	12	9265197	9265197	+	Intron	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48438918	48438918	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87179792	87179792	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101578719	101578719	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD5	51099	broad.mit.edu	37	3	43759816	43759816	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI1	10006	broad.mit.edu	37	10	27060037	27060038	+	Intron	INS	-	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33614583	33614583	+	Intron	DEL	G	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33684007	33684008	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43860531	43860531	+	Missense_Mutation	SNP	C	A	A	rs149591802	byFrequency	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1342098	1342098	+	Intron	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123033020	123033020	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	50307631	50307631	+	Intron	SNP	G	T	T	rs144214635	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX12	239	broad.mit.edu	37	17	6908420	6908420	+	Intron	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD28	23243	broad.mit.edu	37	3	15755258	15755258	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37447174	37447174	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36B	57730	broad.mit.edu	37	2	98190023	98190023	+	Intron	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	6032436	6032436	+	Intron	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22281166	22281166	+	Silent	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR2	118429	broad.mit.edu	37	4	80993620	80993620	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA2P3	305	broad.mit.edu	37	10	66585821	66585821	+	RNA	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA8	653145	broad.mit.edu	37	10	47024033	47024033	+	Intron	SNP	G	A	A	rs75491304	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1M2	10053	broad.mit.edu	37	19	10691874	10691874	+	Intron	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLP1	333	broad.mit.edu	37	19	36369895	36369895	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144162338	144162338	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF10	9639	broad.mit.edu	37	8	1871250	1871250	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46254641	46254641	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL15	54622	broad.mit.edu	37	5	53522601	53522601	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC9	80210	broad.mit.edu	37	2	232127155	232127155	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176952968	176952968	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11B	23200	broad.mit.edu	37	3	182635879	182635879	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25255612	25255612	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193185436	193185436	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0E1	8992	broad.mit.edu	37	5	172447277	172447277	+	Silent	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2	6311	broad.mit.edu	37	12	111923112	111923112	+	Silent	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT3	283358	broad.mit.edu	37	12	657408	657408	+	Silent	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11057399	11057399	+	Intron	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAP31	10134	broad.mit.edu	37	X	152966488	152966488	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDNFOS	497258	broad.mit.edu	37	11	27603514	27603514	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN1	274	broad.mit.edu	37	2	127818195	127818195	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49689543	49689543	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A3	54718	broad.mit.edu	37	6	26430954	26430954	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112677043	112677043	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf57	113246	broad.mit.edu	37	12	7053849	7053849	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf77	196415	broad.mit.edu	37	12	25149381	25149381	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf48	256369	broad.mit.edu	37	14	94467711	94467711	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf41	84529	broad.mit.edu	37	15	36950114	36950114	+	Intron	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf128	57095	broad.mit.edu	37	1	24105997	24105997	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf32	51066	broad.mit.edu	37	3	8689861	8689861	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf52	79669	broad.mit.edu	37	3	111831642	111831642	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf40	401137	broad.mit.edu	37	4	71024571	71024571	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf49	134121	broad.mit.edu	37	5	7832223	7832223	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf35	729515	broad.mit.edu	37	6	157731874	157731874	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89901079	89901079	+	Intron	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf80	389643	broad.mit.edu	37	8	27927253	27927253	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf79	286234	broad.mit.edu	37	9	90502913	90502913	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA12	771	broad.mit.edu	37	15	63637803	63637803	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65099811	65099811	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181498289	181498289	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201047024	201047024	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG3	10368	broad.mit.edu	37	16	24324241	24324241	+	Intron	SNP	G	A	A	rs71154299		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN3	825	broad.mit.edu	37	15	42689048	42689048	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC102B	79839	broad.mit.edu	37	18	66419441	66419441	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC135	84229	broad.mit.edu	37	16	57731941	57731941	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC27	148870	broad.mit.edu	37	1	3672165	3672165	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180378511	180378511	+	Silent	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNJ	54619	broad.mit.edu	37	10	97810018	97810018	+	Silent	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883028	21883028	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	82769391	82769391	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH5	1003	broad.mit.edu	37	16	66413319	66413319	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP63	80254	broad.mit.edu	37	3	134276927	134276927	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6196606	6196606	+	Silent	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53243421	53243450	+	In_Frame_Del	DEL	TCTGGGACATATACTAAGTTGCAGAATACC	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT6L	246175	broad.mit.edu	37	4	78652605	78652605	+	Silent	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNPY3	10695	broad.mit.edu	37	6	42902347	42902347	+	Intron	DEL	G	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105815499	105815499	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189914110	189914110	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL8A1	1295	broad.mit.edu	37	3	99509625	99509625	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX10	1352	broad.mit.edu	37	17	14080573	14080573	+	Intron	SNP	G	A	A	rs2260450		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF6	11052	broad.mit.edu	37	12	69652822	69652822	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197404462	197404462	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110644336	110644336	+	Missense_Mutation	SNP	C	T	T	rs56030372		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMGDH	29958	broad.mit.edu	37	5	78349866	78349866	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMPK	1760	broad.mit.edu	37	19	46283080	46283080	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMWD	1762	broad.mit.edu	37	19	46287967	46287967	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMWD	1762	broad.mit.edu	37	19	46289604	46289604	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH14	127602	broad.mit.edu	37	1	225152122	225152122	+	Intron	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230272210	230272210	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35161249	35161249	+	Intron	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS4L	11062	broad.mit.edu	37	7	107217700	107217700	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F3	1871	broad.mit.edu	37	6	20490758	20490758	+	3'UTR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK1	27102	broad.mit.edu	37	7	6084286	6084286	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4E	1977	broad.mit.edu	37	4	99809080	99809080	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMX2OS	196047	broad.mit.edu	37	10	119274629	119274629	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L2	64787	broad.mit.edu	37	11	722496	722496	+	Silent	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	217243225	217243225	+	Intron	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128350260	128350260	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC7	23265	broad.mit.edu	37	17	74097948	74097948	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F7	2155	broad.mit.edu	37	13	113772899	113772899	+	Silent	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM178A	55719	broad.mit.edu	37	10	102706855	102706855	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12422083	12422083	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12424215	12424215	+	RNA	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM82B	51115	broad.mit.edu	37	8	87487184	87487184	+	Splice_Site	SNP	T	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89865712	89865712	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANK1	92565	broad.mit.edu	37	10	127606671	127606671	+	Intron	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL12	54850	broad.mit.edu	37	19	9931118	9931118	+	5'Flank	SNP	T	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15927950	15927950	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO17	115290	broad.mit.edu	37	19	39433138	39433138	+	3'UTR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIBP	9158	broad.mit.edu	37	11	65655330	65655330	+	Intron	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9	11328	broad.mit.edu	37	7	33044973	33044973	+	3'UTR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216273069	216273069	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNTA	2339	broad.mit.edu	37	8	42927367	42927367	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOS	2353	broad.mit.edu	37	14	75747810	75747810	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXB1	27023	broad.mit.edu	37	15	60297453	60297453	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1	2483	broad.mit.edu	37	4	190871353	190871353	+	Intron	SNP	G	A	A	rs143398018		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD1	79981	broad.mit.edu	37	6	168461497	168461497	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12736345	12736345	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49267986	49267986	+	Intron	DEL	A	-	-	rs66461628		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD1	55783	broad.mit.edu	37	16	71319826	71319826	+	5'UTR	SNP	T	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBAS	2631	broad.mit.edu	37	7	56045715	56045715	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM2	9247	broad.mit.edu	37	6	10877357	10877357	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	118028899	118028900	+	Intron	DNP	CA	AG	AG			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55223906	55223906	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP7	168537	broad.mit.edu	37	7	150212823	150212823	+	Intron	DEL	T	-	-	rs66554226		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121685258	121685258	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG2	54331	broad.mit.edu	37	14	52412559	52412560	+	Intron	INS	-	TCTT	TCTT	rs145296928	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNMT	27232	broad.mit.edu	37	6	42930898	42930898	+	Silent	SNP	C	T	T	rs147746130		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA4	2803	broad.mit.edu	37	3	37317715	37317715	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR110	266977	broad.mit.edu	37	6	46968041	46968042	+	Intron	INS	-	A	A	rs819499		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR111	222611	broad.mit.edu	37	6	47645579	47645579	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117121855	117121856	+	Missense_Mutation	DNP	CT	AC	AC			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105795326	105795326	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GXYLT1	283464	broad.mit.edu	37	12	42491397	42491397	+	Silent	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPE	2996	broad.mit.edu	37	4	144794038	144794038	+	Intron	DEL	A	-	-	rs59463577		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR2	54919	broad.mit.edu	37	7	803599	803599	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43503272	43503272	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92826793	92826793	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186050516	186050516	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPN	3249	broad.mit.edu	37	19	35551526	35551526	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22199389	22199389	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53652847	53652852	+	Intron	DEL	GCCGGT	-	-	rs11091285	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70980470	70980470	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFLTD1	160492	broad.mit.edu	37	12	25762899	25762899	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT74	80173	broad.mit.edu	37	9	27016972	27016972	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117137539	117137540	+	Intron	INS	-	G	G	rs143026687		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	105010959	105010959	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31RA	133396	broad.mit.edu	37	5	55204061	55204061	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMP2L	83943	broad.mit.edu	37	7	111034849	111034849	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105211102	105211103	+	Intron	DNP	AC	TT	TT			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6068395	6068395	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JTB	10899	broad.mit.edu	37	1	153949136	153949136	+	Intron	DEL	A	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK4	163782	broad.mit.edu	37	1	62704060	62704060	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63194944	63194944	+	Intron	DEL	A	-	-	rs67931985		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53231148	53231148	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43904467	43904467	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154539652	154539652	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10355101	10355101	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154393718	154393718	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRG1	10219	broad.mit.edu	37	12	9162084	9162084	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRG1	10219	broad.mit.edu	37	12	9162484	9162484	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT83	3889	broad.mit.edu	37	12	52708943	52708943	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMP3	27074	broad.mit.edu	37	3	182871711	182871711	+	Missense_Mutation	SNP	G	C	C	rs115806403	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55085394	55085394	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54782478	54782478	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINS1	55180	broad.mit.edu	37	15	101110081	101110081	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPA	3988	broad.mit.edu	37	10	91170740	91170740	+	Intron	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN2	10960	broad.mit.edu	37	5	176778161	176778161	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN2	10960	broad.mit.edu	37	5	176778186	176778186	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238054126	238054126	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC286238	286238	broad.mit.edu	37	9	91262362	91262362	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC399815	399815	broad.mit.edu	37	10	124640306	124640306	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550112	550112	broad.mit.edu	37	4	68898849	68898849	+	Intron	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21941751	21941751	+	5'Flank	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647121	647121	broad.mit.edu	37	1	121304162	121304162	+	5'Flank	SNP	T	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91830729	91830729	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC93432	93432	broad.mit.edu	37	7	141820256	141820256	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22694912	22694912	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22694917	22694917	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23247000	23247000	+	Intron	SNP	T	C	C	rs563401		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62778676	62778676	+	Intron	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141115788	141115788	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141795475	141795478	+	Intron	DEL	ACAC	-	-	rs139680637		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170012818	170012818	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM3	27258	broad.mit.edu	37	3	14239533	14239533	+	Intron	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE2	139599	broad.mit.edu	37	X	75003939	75003939	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI3	260425	broad.mit.edu	37	1	114186352	114186352	+	Intron	DEL	T	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED20	9477	broad.mit.edu	37	6	41888852	41888852	+	5'UTR	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131943069	131943069	+	Silent	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICB	4277	broad.mit.edu	37	6	31473363	31473363	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30516991	30516991	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9072492	9072492	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100678546	100678546	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100681196	100681196	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10450895	10450895	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10317637	10317637	+	Intron	SNP	C	T	T	rs144988395	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123345716	123345716	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16769271	16769271	+	Silent	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NACAP1	83955	broad.mit.edu	37	8	102381116	102381116	+	5'Flank	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101890210	101890210	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAMPT	10135	broad.mit.edu	37	7	105903950	105903950	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78598805	78598805	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35630161	35630161	+	Silent	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145295990	145295990	+	Intron	SNP	G	A	A	rs116275225	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA2	10499	broad.mit.edu	37	8	71305771	71305771	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00164	554226	broad.mit.edu	37	2	133001847	133001847	+	Intron	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST2	8509	broad.mit.edu	37	10	75565704	75565704	+	Missense_Mutation	SNP	C	T	T	rs150846687	byFrequency	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21330868	21330868	+	Intron	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152520401	152520401	+	Intron	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73541659	73541659	+	Intron	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGDN	25983	broad.mit.edu	37	14	23946877	23946877	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIN	51199	broad.mit.edu	37	14	51239175	51239175	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLN	57486	broad.mit.edu	37	5	65077205	65077205	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5415412	5415412	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56552450	56552450	+	Silent	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120563493	120563494	+	Intron	INS	-	A	A	rs143665122	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2C2	7182	broad.mit.edu	37	3	15057759	15057759	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115406792	115406792	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176709559	176709559	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59548152	59548152	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59548154	59548154	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131722472	131722472	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131809956	131809956	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88770994	88770994	+	Intron	SNP	C	A	A	rs144524870	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXN	64359	broad.mit.edu	37	17	867249	867249	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14I1	401994	broad.mit.edu	37	1	248845530	248845530	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248201629	248201629	+	Silent	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55405947	55405947	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7E24	26648	broad.mit.edu	37	19	9361929	9361929	+	Silent	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G4	283189	broad.mit.edu	37	11	56510345	56510345	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL10	114884	broad.mit.edu	37	3	31720735	31720735	+	Intron	SNP	A	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLA	10914	broad.mit.edu	37	14	97022723	97022723	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLB	56903	broad.mit.edu	37	7	4901105	4901105	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25024012	25024012	+	Intron	SNP	A	G	G	rs146730967	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25043948	25043948	+	Intron	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91715542	91715542	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58299398	58299398	+	Silent	SNP	G	C	C	rs141868878		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA4	56144	broad.mit.edu	37	5	140188367	140188367	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165792718	165792718	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145004675	145004675	+	Intron	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFN2	5217	broad.mit.edu	37	3	149686355	149686355	+	Intron	DEL	G	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11022852	11022852	+	Intron	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI15	51050	broad.mit.edu	37	8	75737309	75737309	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIAS2	9063	broad.mit.edu	37	18	44426825	44426825	+	Intron	SNP	A	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R3	8503	broad.mit.edu	37	1	46554551	46554552	+	Intron	INS	-	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94318460	94318460	+	Intron	SNP	T	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81941975	81941975	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCXD3	345557	broad.mit.edu	37	5	41313927	41313927	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204274963	204274963	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118310710	118310710	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38172778	38172778	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POT1	25913	broad.mit.edu	37	7	124503684	124503684	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76812942	76812942	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1H	57460	broad.mit.edu	37	12	63195774	63195774	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12A	4659	broad.mit.edu	37	12	80200036	80200036	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPT2	9374	broad.mit.edu	37	6	32130755	32130755	+	3'UTR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57485672	57485673	+	Intron	INS	-	C	C	rs151109620	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR1B	5575	broad.mit.edu	37	7	628279	628279	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1582841	1582841	+	Intron	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR13	54458	broad.mit.edu	37	12	53839947	53839947	+	3'UTR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFRN	5738	broad.mit.edu	37	1	117472591	117472591	+	Intron	SNP	G	A	A	rs150607889	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70963486	70963486	+	Silent	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8486432	8486432	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52321349	52321349	+	Silent	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48916812	48916812	+	Silent	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMS3	27303	broad.mit.edu	37	3	29939079	29939079	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103557649	103557649	+	Intron	DEL	A	-	-	rs79791706		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV1	51455	broad.mit.edu	37	2	100035415	100035415	+	Intron	DEL	A	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117216355	117216355	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241519205	241519205	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIN1	9610	broad.mit.edu	37	11	66099816	66099816	+	Silent	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIN3	79890	broad.mit.edu	37	14	93118141	93118141	+	Silent	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25442836	25442836	+	Silent	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55534651	55534651	+	Intron	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP9	6100	broad.mit.edu	37	7	33134785	33134785	+	3'UTR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3AL	9501	broad.mit.edu	37	17	123066	123066	+	Intron	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS18	6222	broad.mit.edu	37	6	33243778	33243778	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213414788	213414788	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO4	343637	broad.mit.edu	37	20	950980	950980	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237895272	237895272	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237994912	237994912	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAFB	6294	broad.mit.edu	37	19	5641732	5641733	+	Intron	DNP	CG	TT	TT			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50903328	50903328	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SC4MOL	6307	broad.mit.edu	37	4	166251927	166251928	+	Intron	INS	-	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38770107	38770107	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166142355	166142355	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDPR	8436	broad.mit.edu	37	2	192701434	192701434	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61A2	55176	broad.mit.edu	37	10	12208833	12208833	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26611251	26611251	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA2	387914	broad.mit.edu	37	13	26620732	26620732	+	Silent	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13071746	13071746	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX	6473	broad.mit.edu	37	X	591647	591647	+	Silent	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164730666	164730666	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A3	151295	broad.mit.edu	37	2	220034256	220034256	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A2	10568	broad.mit.edu	37	4	25676047	25676047	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B2	347734	broad.mit.edu	37	6	44223913	44223913	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B2	347734	broad.mit.edu	37	6	44223960	44223960	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B2	347734	broad.mit.edu	37	6	44224130	44224130	+	Silent	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B2	347734	broad.mit.edu	37	6	44224622	44224622	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42334704	42334704	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173523802	173523802	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70623557	70623557	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20533720	20533720	+	Intron	SNP	A	T	T	rs75154810		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88327643	88327643	+	5'UTR	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11169030	11169030	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP25	6616	broad.mit.edu	37	20	10277482	10277482	+	Intron	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	50892132	50892132	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12285628	12285628	+	Intron	DEL	T	-	-	rs35626109		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX31	169166	broad.mit.edu	37	8	101589385	101589385	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	23728667	23728667	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG5	10615	broad.mit.edu	37	17	26906970	26906970	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG7	6687	broad.mit.edu	37	16	89620342	89620342	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP2	23380	broad.mit.edu	37	1	206577787	206577787	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT3	6774	broad.mit.edu	37	17	40474456	40474456	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STEAP1	26872	broad.mit.edu	37	7	89791112	89791112	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK3	6788	broad.mit.edu	37	8	99885935	99885935	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STMN1	3925	broad.mit.edu	37	1	26227995	26227995	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74477199	74477199	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3B	201595	broad.mit.edu	37	3	31656612	31656612	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD5	26032	broad.mit.edu	37	3	33194089	33194089	+	3'UTR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29777571	29777571	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10961861	10961861	+	Intron	DEL	G	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT15	83849	broad.mit.edu	37	10	46965322	46965322	+	Intron	SNP	A	G	G	rs142851937	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R40	259286	broad.mit.edu	37	7	142919176	142919177	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D16	125058	broad.mit.edu	37	17	77922923	77922923	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D21	161514	broad.mit.edu	37	15	74173918	74173918	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139543926	139543926	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152079858	152079858	+	3'UTR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2	7024	broad.mit.edu	37	12	51504805	51504805	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFIP11	24144	broad.mit.edu	37	22	26899579	26899579	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92184900	92184900	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138314218	138314218	+	Intron	SNP	A	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98205675	98205675	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98205942	98205942	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98206066	98206066	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	62949974	62949974	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR9	54106	broad.mit.edu	37	3	52257315	52257315	+	Silent	SNP	A	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF1	10548	broad.mit.edu	37	14	24680595	24680595	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO3	55002	broad.mit.edu	37	13	114188487	114188487	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM66	51669	broad.mit.edu	37	8	29927382	29927382	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMSL3	7117	broad.mit.edu	37	4	91760222	91760222	+	5'UTR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2P1	646405	broad.mit.edu	37	13	25535993	25535993	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRANK1	9881	broad.mit.edu	37	3	36899467	36899467	+	5'UTR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123709670	123709670	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIL	9865	broad.mit.edu	37	7	28997432	28997432	+	Silent	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31318402	31318402	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3448020	3448020	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRYX3	136541	broad.mit.edu	37	7	141954855	141954855	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81422342	81422342	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43220499	43220499	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL5	23093	broad.mit.edu	37	14	76135766	76135766	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2E1	7324	broad.mit.edu	37	3	23885226	23885227	+	Intron	INS	-	T	T	rs146105443	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLNL	143630	broad.mit.edu	37	11	5537572	5537572	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42627405	42627405	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19492312	19492312	+	Intron	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCN3	114131	broad.mit.edu	37	10	5412114	5412114	+	Intron	SNP	A	G	G	rs141740203	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70504819	70504819	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54586371	54586371	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF2	26019	broad.mit.edu	37	10	11973605	11973605	+	Intron	DEL	A	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP1	7398	broad.mit.edu	37	1	62908992	62908992	+	Splice_Site	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11944424	11944424	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	50462742	50462742	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51583013	51583014	+	IGR	INS	-	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59299754	59299754	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59299776	59299776	+	IGR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	19566352	19566352	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	23016014	23016014	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	76531186	76531186	+	IGR	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	91670993	91670993	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111424741	111424741	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	112978498	112978498	+	IGR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19990135	19990135	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	29296557	29296557	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56234519	56234519	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59104874	59104874	+	IGR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79483403	79483403	+	IGR	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	80429277	80429277	+	IGR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82383888	82383888	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	86651831	86651831	+	IGR	SNP	A	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98823554	98823554	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20144579	20144579	+	IGR	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20571246	20571246	+	IGR	SNP	T	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34815301	34815301	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	72671575	72671575	+	IGR	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88826343	88826343	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	13737535	13737535	+	IGR	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	22650616	22650616	+	IGR	SNP	G	A	A	rs146439269	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26442342	26442345	+	IGR	DEL	TGTT	-	-	rs71387719		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	27034091	27034091	+	IGR	DEL	A	-	-	rs140205254		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32831257	32831257	+	IGR	SNP	A	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33397250	33397250	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33535990	33535990	+	IGR	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25280643	25280643	+	IGR	DEL	G	-	-	rs112681301		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25291613	25291613	+	IGR	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25304000	25304000	+	IGR	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30433468	30433468	+	IGR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	31275092	31275092	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	32745492	32745492	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	33518166	33518166	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	36479332	36479332	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	44348964	44348965	+	IGR	DEL	AG	-	-	rs138336567		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	5609993	5609993	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	6167818	6167818	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25791798	25791798	+	IGR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22497619	22497619	+	IGR	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31369495	31369495	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	41333286	41333286	+	IGR	SNP	C	G	G	rs140593638	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54194294	54194294	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106623470	106623470	+	IGR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111514909	111514909	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	11456499	11456499	+	IGR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142542732	142542732	+	IGR	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143535520	143535520	+	IGR	SNP	C	T	T	rs76190102		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	14725110	14725110	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16877011	16877011	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170526767	170526767	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	228163487	228163487	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	233599644	233599645	+	IGR	DEL	AC	-	-	rs35240287		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	234800459	234800459	+	IGR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	88258305	88258306	+	IGR	INS	-	T	T	rs148196097	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	98808480	98808480	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11668165	11668165	+	IGR	SNP	T	C	C	rs141686364	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	26072656	26072656	+	IGR	SNP	T	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29584135	29584136	+	IGR	INS	-	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29589273	29589273	+	IGR	SNP	T	G	G	rs78810638		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	39140188	39140188	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10139738	10139738	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11120009	11120009	+	IGR	SNP	C	G	G	rs1971563		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11121892	11121892	+	IGR	SNP	C	T	T	rs147232217	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11122151	11122151	+	IGR	SNP	G	C	C	rs59668260		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11122159	11122159	+	IGR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11164162	11164162	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14757231	14757231	+	IGR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	21797797	21797797	+	IGR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24780581	24780581	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	39355384	39355384	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9660446	9660446	+	IGR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9672279	9672280	+	IGR	INS	-	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123438	16123438	+	IGR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16867340	16867340	+	IGR	DEL	C	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	101306995	101306995	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	114586161	114586161	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	123161371	123161371	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132775622	132775622	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146584713	146584713	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	16125338	16125338	+	IGR	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	182559269	182559269	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	201709637	201709637	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217457666	217457666	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	223846161	223846161	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	234713072	234713072	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	235105190	235105190	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	235596130	235596130	+	IGR	DEL	T	-	-	rs34077909		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81426440	81426440	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	97697154	97697154	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155705213	155705213	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155705891	155705891	+	IGR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	172992142	172992142	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	193912153	193912153	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	55191242	55191242	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80436712	80436712	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18524382	18524382	+	IGR	DEL	C	-	-	rs76594635		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190672153	190672153	+	IGR	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	191029894	191029894	+	IGR	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4231694	4231694	+	IGR	SNP	A	C	C	rs112043247	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45611600	45611600	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49211903	49211903	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	157897238	157897239	+	IGR	INS	-	CTGT	CTGT	rs141189062	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	17519797	17519797	+	IGR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	18105088	18105088	+	IGR	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	3660139	3660139	+	IGR	SNP	A	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	3814203	3814204	+	IGR	INS	-	G	G	rs144476733	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	4013381	4013382	+	IGR	INS	-	C	C	rs148319706	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97106825	97106825	+	IGR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112952082	112952082	+	IGR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	147728880	147728880	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	156588435	156588435	+	IGR	DEL	A	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	3711400	3711401	+	IGR	INS	-	TC	TC	rs149877426	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	44678692	44678692	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54154744	54154744	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57514537	57514538	+	IGR	INS	-	TCA	TCA	rs142174162		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57571046	57571046	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	73144996	73144996	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108690117	108690117	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	132854343	132854343	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144844615	144844615	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	36814310	36814310	+	IGR	DEL	T	-	-	rs57223885		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	47062444	47062445	+	IGR	INS	-	A	A	rs139747559	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217650	57217650	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61824514	61824514	+	IGR	SNP	C	T	T	rs141078089	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61827624	61827624	+	IGR	DEL	T	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61829880	61829880	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64555118	64555118	+	IGR	SNP	A	C	C	rs138301781	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132310459	132310459	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136786103	136786103	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	19723297	19723297	+	IGR	DEL	G	-	-	rs142057331		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47009513	47009513	+	IGR	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47174546	47174546	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47174856	47174856	+	IGR	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	49297743	49297743	+	IGR	DEL	A	-	-	rs140564135		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58720695	58720695	+	IGR	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	87329595	87329595	+	IGR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	112370509	112370509	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118236530	118236530	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	121500940	121500940	+	IGR	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44827557	44827557	+	IGR	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66471194	66471194	+	IGR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66482250	66482250	+	IGR	SNP	T	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68400660	68400660	+	IGR	SNP	G	T	T	rs79149864	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68416898	68416898	+	IGR	SNP	A	G	G	rs138385455		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68491892	68491892	+	IGR	SNP	G	A	A	rs144812102	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68692215	68692215	+	IGR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69804744	69804744	+	IGR	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	66594626	66594626	+	IGR	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	23655460	23655460	+	IGR	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	58905301	58905301	+	IGR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9960349	9960349	+	IGR	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77830955	77830955	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS33B	26276	broad.mit.edu	37	15	91546277	91546277	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP4	11193	broad.mit.edu	37	13	41636806	41636806	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70880904	70880904	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR3	10885	broad.mit.edu	37	1	118479447	118479447	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR3	10885	broad.mit.edu	37	1	118492649	118492649	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC3	7517	broad.mit.edu	37	14	104177222	104177222	+	Intron	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP57	346171	broad.mit.edu	37	6	29643051	29643051	+	Intron	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF248	57209	broad.mit.edu	37	10	38145394	38145394	+	5'UTR	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF254	9534	broad.mit.edu	37	19	24309364	24309364	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF263	10127	broad.mit.edu	37	16	3336081	3336081	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF267	10308	broad.mit.edu	37	16	31927805	31927805	+	3'UTR	SNP	A	T	T	rs76018203		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF516	9658	broad.mit.edu	37	18	74092262	74092262	+	Intron	SNP	A	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	55040	55040	+	Intron	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF623	9831	broad.mit.edu	37	8	144733483	144733483	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22362404	22362404	+	3'UTR	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF813	126017	broad.mit.edu	37	19	53994808	53994808	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102187940	102187940	+	Silent	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20599657	20599657	+	Intron	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20620298	20620298	+	Intron	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5612503	5612504	+	Intron	INS	-	G	G	rs148489785	by1000genomes	TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37186026	37186026	+	5'Flank	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29801429	29801429	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121127819	121127819	+	Intron	SNP	A	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142642763	142642763	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143140528	143140528	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148889634	148889634	+	RNA	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158461737	158461737	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	25844839	25844839	+	Intron	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	8297117	8297117	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91678923	91678923	+	5'Flank	SNP	C	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	127200268	127200268	+	Intron	SNP	C	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190808280	190808280	+	Intron	DEL	C	-	-			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	10180343	10180344	+	Intron	DEL	TC	-	-	rs139133617		TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38388902	38388902	+	Intron	SNP	G	A	A			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12429817	12429817	+	Intron	SNP	G	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7016267	7016267	+	Intron	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66456380	66456380	+	Intron	SNP	C	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66461564	66461564	+	Intron	SNP	A	G	G			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	1373	1373	+	5'Flank	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	14856	14856	+	Silent	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	16	16	+	5'Flank	SNP	A	T	T			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	5689	5689	+	5'Flank	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	5887	5887	+	5'UTR	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	875	875	+	5'Flank	SNP	T	C	C			TCGA-17-Z000-01A-01W-0746-08	TCGA-17-Z000-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
