Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	6992617	6992617	+	Intron	SNP	G	T	T	rs144225211	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	6992621	6992621	+	Intron	SNP	A	C	C	rs148306268	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	9033271	9033271	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB10	23456	broad.mit.edu	37	1	229685163	229685163	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48218332	48218332	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC6	368	broad.mit.edu	37	16	16302427	16302427	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89400400	89400400	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACHE	43	broad.mit.edu	37	7	100491143	100491143	+	Silent	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM28	10863	broad.mit.edu	37	8	24157656	24157656	+	Intron	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73178124	73178124	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64628395	64628395	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131861916	131861916	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPRH	141	broad.mit.edu	37	3	119305362	119305362	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247087043	247087046	+	Intron	DEL	GTGT	-	-	rs74456165		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP1	8165	broad.mit.edu	37	17	55183751	55183771	+	In_Frame_Del	DEL	GCTTGGATAGAAATGAGGAGG	-	-	rs138803240	byFrequency	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B10	57016	broad.mit.edu	37	7	134212616	134212616	+	5'UTR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58531962	58531962	+	Intron	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29519746	29519746	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29520023	29520023	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMICA1	120425	broad.mit.edu	37	11	118074423	118074423	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO10	55129	broad.mit.edu	37	3	43601004	43601004	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3D1	8943	broad.mit.edu	37	19	2109080	2109080	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOL1	8542	broad.mit.edu	37	22	36653586	36653586	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119133503	119133503	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPC3	10094	broad.mit.edu	37	12	110883275	110883275	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119943317	119943317	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2B	54454	broad.mit.edu	37	2	24003225	24003226	+	Intron	DEL	AA	-	-	rs113454961		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG3	64422	broad.mit.edu	37	3	112255402	112255402	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B1	490	broad.mit.edu	37	12	89997431	89997431	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0E1	8992	broad.mit.edu	37	5	172410887	172410887	+	Silent	SNP	G	C	C	rs35000513	byFrequency;by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50154509	50154509	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50226286	50226286	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVL9	23080	broad.mit.edu	37	7	32598881	32598881	+	Silent	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11064649	11064649	+	Intron	SNP	G	C	C	rs76731709		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11074836	11074836	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS1	582	broad.mit.edu	37	11	66296692	66296692	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129173013	129173013	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDNFOS	497258	broad.mit.edu	37	11	27554128	27554128	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107886056	107886056	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107916579	107916579	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD3	22903	broad.mit.edu	37	20	11900471	11900471	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105920842	105920842	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf73	51501	broad.mit.edu	37	11	86055612	86055612	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112665780	112665780	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf87	388272	broad.mit.edu	37	16	46858384	46858384	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf37	84299	broad.mit.edu	37	17	37885794	37885794	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1GALT1	56913	broad.mit.edu	37	7	7249745	7249745	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf186	149954	broad.mit.edu	37	20	31676596	31676596	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf99	149992	broad.mit.edu	37	21	14418562	14418562	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113554419	113554419	+	Intron	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf37	285555	broad.mit.edu	37	4	98480164	98480164	+	3'UTR	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715222	165715222	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40656387	40656387	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69374618	69374618	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62751729	62751729	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110710570	110710570	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKK2	10645	broad.mit.edu	37	12	121708849	121708849	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN1	823	broad.mit.edu	37	11	64973128	64973128	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104900974	104900974	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBP2	1238	broad.mit.edu	37	3	42906618	42906618	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31571203	31571203	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC19	25790	broad.mit.edu	37	1	159854362	159854362	+	Intron	SNP	G	C	C	rs115172513	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT7	10574	broad.mit.edu	37	2	73471671	73471671	+	Splice_Site	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158301216	158301216	+	5'UTR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDADC1	81602	broad.mit.edu	37	13	49841903	49841903	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19473890	19473890	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP290	80184	broad.mit.edu	37	12	88505592	88505592	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55846924	55846924	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR1	3078	broad.mit.edu	37	1	196796071	196796071	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50830323	50830323	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53306155	53306156	+	Intron	INS	-	A	A	rs149278265	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIT1	1118	broad.mit.edu	37	1	203185839	203185839	+	3'UTR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	423942	423942	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHODL	140578	broad.mit.edu	37	21	19331339	19331339	+	Intron	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120147592	120147592	+	Intron	SNP	A	T	T	rs150206566	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73769480	73769480	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100129128	100129128	+	Intron	SNP	T	C	C	rs144562555	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147938232	147938232	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71712696	71712696	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94041845	94041845	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10079106	10079106	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10079135	10079135	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238277341	238277341	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC10	10584	broad.mit.edu	37	8	120105471	120105471	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166325369	166325369	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131337929	131337929	+	Intron	SNP	T	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSAD	51380	broad.mit.edu	37	12	53567339	53567339	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34427378	34427378	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113276073	113276073	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113323222	113323222	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113363500	113363500	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTB	1476	broad.mit.edu	37	21	45194582	45194582	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNBL1	56259	broad.mit.edu	37	20	36447329	36447329	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTRC	11330	broad.mit.edu	37	1	15770035	15770036	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36091390	36091390	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36091419	36091419	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5RL	606495	broad.mit.edu	37	1	54656591	54656591	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41519111	41519111	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAO	1610	broad.mit.edu	37	12	109292652	109292652	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK2	23604	broad.mit.edu	37	15	64332369	64332369	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAXX	1616	broad.mit.edu	37	6	33289692	33289692	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	122004361	122004361	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCBLD1	285761	broad.mit.edu	37	6	117846533	117846533	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DERA	51071	broad.mit.edu	37	12	16189387	16189388	+	Intron	DNP	GA	TT	TT			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC3	729582	broad.mit.edu	37	2	218478284	218478284	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	85087339	85087339	+	Intron	SNP	T	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7697704	7697704	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7719956	7719956	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB13	374407	broad.mit.edu	37	11	73675853	73675853	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC24	120526	broad.mit.edu	37	11	31452041	31452041	+	3'UTR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3B	1789	broad.mit.edu	37	20	31376692	31376692	+	Silent	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154375974	154375974	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG2	1829	broad.mit.edu	37	18	29121112	29121112	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EARS2	124454	broad.mit.edu	37	16	23541066	23541066	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBP	10682	broad.mit.edu	37	X	48385717	48385717	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55238294	55238294	+	Intron	SNP	G	T	T	rs17290239		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA4	2043	broad.mit.edu	37	2	222428866	222428866	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220154722	220154722	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC1	23085	broad.mit.edu	37	12	1213593	1213593	+	Intron	SNP	T	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRB	2103	broad.mit.edu	37	14	76929098	76929098	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216944083	216944083	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC6	118460	broad.mit.edu	37	16	70284909	70284909	+	3'UTR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6175039	6175039	+	Silent	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6185918	6185918	+	Intron	SNP	T	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169526045	169526046	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM113A	64773	broad.mit.edu	37	20	2816935	2816935	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160B1	57700	broad.mit.edu	37	10	116621056	116621056	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM162A	26355	broad.mit.edu	37	3	122121940	122121940	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45432036	45432036	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40A	85369	broad.mit.edu	37	1	110594385	110594385	+	Silent	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34148898	34148898	+	Silent	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34149052	34149052	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCC	2176	broad.mit.edu	37	9	97957647	97957647	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92120604	92120604	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO34	55030	broad.mit.edu	37	14	55819090	55819090	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRLB	127943	broad.mit.edu	37	1	161692438	161692438	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155507769	155507769	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	60718355	60718355	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	61119426	61119426	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ12825	440101	broad.mit.edu	37	12	54515867	54515867	+	RNA	SNP	G	A	A	rs139418373	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ12825	440101	broad.mit.edu	37	12	54515875	54515875	+	RNA	SNP	C	T	T	rs149523917	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43663	378805	broad.mit.edu	37	7	130788889	130788889	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43950	347127	broad.mit.edu	37	9	84530644	84530644	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29621023	29621023	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSIP1	161835	broad.mit.edu	37	15	40059345	40059345	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173657745	173657745	+	Intron	SNP	T	C	C	rs148103387	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS5	60674	broad.mit.edu	37	1	173833589	173833589	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA5	140628	broad.mit.edu	37	20	61039976	61039976	+	Silent	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM1	85476	broad.mit.edu	37	3	158366792	158366792	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42465516	42465516	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA1	2697	broad.mit.edu	37	6	121769175	121769175	+	3'UTR	SNP	A	C	C	rs146315123	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6604889	6604889	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135455443	135455443	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR115	221393	broad.mit.edu	37	6	47681878	47681878	+	Silent	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88388395	88388395	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTK1	373156	broad.mit.edu	37	7	142965391	142965391	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21483845	21483845	+	Intron	SNP	C	T	T	rs12189412		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMK	3003	broad.mit.edu	37	5	54329714	54329714	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADHB	3032	broad.mit.edu	37	2	26486289	26486289	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18869166	18869166	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43351324	43351324	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3G	8355	broad.mit.edu	37	6	26273675	26273675	+	5'Flank	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DRA	3122	broad.mit.edu	37	6	32411098	32411098	+	Silent	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114383995	114383995	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71025343	71025343	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFLTD1	160492	broad.mit.edu	37	12	25641647	25641647	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118730289	118730289	+	Intron	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RL1	9173	broad.mit.edu	37	2	102957269	102957269	+	Silent	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSIG2	51141	broad.mit.edu	37	2	118851575	118851575	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS8	55656	broad.mit.edu	37	8	95888301	95888301	+	Splice_Site	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCA1	79781	broad.mit.edu	37	2	237316605	237316605	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52824654	52824654	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26748381	26748381	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124149492	124149492	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD12	166348	broad.mit.edu	37	3	127702909	127702909	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNG1	3755	broad.mit.edu	37	20	49620825	49620825	+	Silent	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ3	3786	broad.mit.edu	37	8	133381936	133381936	+	Intron	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	6911844	6911844	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1033	23325	broad.mit.edu	37	12	105521079	105521079	+	Intron	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1033	23325	broad.mit.edu	37	12	105521081	105521081	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57182258	57182258	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20981490	20981490	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1C	10749	broad.mit.edu	37	17	4918584	4918584	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200971448	200971448	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIT	3815	broad.mit.edu	37	4	55544524	55544524	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF7	8609	broad.mit.edu	37	2	207953272	207953272	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL13	90293	broad.mit.edu	37	X	117064211	117064211	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107615628	107615629	+	Intron	DNP	GG	TT	TT			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCK	3932	broad.mit.edu	37	1	32745227	32745227	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP1	3936	broad.mit.edu	37	13	46716599	46716599	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPRE1	64175	broad.mit.edu	37	1	43221286	43221286	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100128542	100128542	broad.mit.edu	37	7	150444656	150444656	+	5'Flank	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283922	283922	broad.mit.edu	37	16	74387769	74387769	+	5'UTR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285780	285780	broad.mit.edu	37	6	6430459	6430460	+	Intron	INS	-	AAAC	AAAC	rs151267919	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC388692	388692	broad.mit.edu	37	1	149288612	149288612	+	RNA	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC723809	723809	broad.mit.edu	37	7	104562691	104562691	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22697799	22697799	+	RNA	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161007734	161007734	+	Intron	SNP	T	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62168024	62168024	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11824714	11824714	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	169995975	169995975	+	Intron	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40637054	40637054	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC50	123872	broad.mit.edu	37	16	84182585	84182585	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC55	219527	broad.mit.edu	37	11	56949738	56949738	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40660268	40660268	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235970013	235970013	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140969493	140969493	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANBA	4126	broad.mit.edu	37	4	103673340	103673340	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K4	4216	broad.mit.edu	37	6	161527689	161527689	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK10	5602	broad.mit.edu	37	4	87028333	87028333	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST2	23139	broad.mit.edu	37	1	46429842	46429842	+	Intron	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP2	55784	broad.mit.edu	37	15	94942203	94942203	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME3	10873	broad.mit.edu	37	11	86323230	86323230	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42861525	42861525	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5	4249	broad.mit.edu	37	2	135107435	135107435	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5	4249	broad.mit.edu	37	2	135185876	135185876	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49437156	49437156	+	Silent	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL5	55904	broad.mit.edu	37	7	104742407	104742407	+	Silent	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP20	9313	broad.mit.edu	37	11	102457360	102457360	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRFAP1L1	114932	broad.mit.edu	37	4	6710967	6710967	+	3'UTR	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTA2	9219	broad.mit.edu	37	11	62365393	62365393	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9027578	9027578	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9074052	9074052	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100683879	100683879	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF5	4617	broad.mit.edu	37	12	81112330	81112330	+	Intron	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10356999	10356999	+	Silent	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17308732	17308732	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST4	23522	broad.mit.edu	37	10	76732041	76732041	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA11	84779	broad.mit.edu	37	4	80246481	80246481	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA25	80018	broad.mit.edu	37	12	112525588	112525588	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19650362	19650362	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90995102	90995102	+	Intron	SNP	T	A	A	rs74275325		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145277092	145277092	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16894077	16894082	+	Intron	DEL	ACACAG	-	-	rs58320527		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDN	4692	broad.mit.edu	37	15	23931409	23931409	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBID	84807	broad.mit.edu	37	19	36381356	36381356	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56510960	56510960	+	5'Flank	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162184339	162184339	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89162786	89162786	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36334405	36334405	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP2	83714	broad.mit.edu	37	12	2940097	2940097	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN2	54888	broad.mit.edu	37	5	6611068	6611068	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131730947	131730947	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228487119	228487119	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	166712153	166712153	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	79006319	79006319	+	Intron	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132307151	132307151	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1A1	8383	broad.mit.edu	37	17	3118156	3118158	+	5'Flank	DEL	ACC	-	-	rs66809596		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S1	219959	broad.mit.edu	37	11	57983116	57983116	+	Silent	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695110	247695110	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T8	343172	broad.mit.edu	37	1	248084349	248084349	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W5	441932	broad.mit.edu	37	1	247655069	247655069	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K14	122740	broad.mit.edu	37	14	20483244	20483244	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55587308	55587308	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C3	254786	broad.mit.edu	37	12	55725897	55725897	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOR	56914	broad.mit.edu	37	20	16729235	16729235	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTX1	5013	broad.mit.edu	37	2	63282636	63282636	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1	26986	broad.mit.edu	37	8	101719131	101719131	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140263970	140263970	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140572893	140572893	+	Silent	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140553607	140553607	+	Silent	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA12	26025	broad.mit.edu	37	5	140812375	140812375	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82583174	82583174	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233296031	233296031	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	32195515	32195515	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66713200	66713200	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54837221	54837221	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70190352	70190352	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32072373	32072373	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB2	5208	broad.mit.edu	37	1	207235398	207235398	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF1	5252	broad.mit.edu	37	6	33382864	33382864	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PICALM	8301	broad.mit.edu	37	11	85712035	85712035	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNC1	26207	broad.mit.edu	37	17	65665757	65665757	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G5	5322	broad.mit.edu	37	1	20364794	20364794	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G5	5322	broad.mit.edu	37	1	20415700	20415700	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD1	5337	broad.mit.edu	37	3	171362664	171362664	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2C	5432	broad.mit.edu	37	16	57503186	57503186	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POP1	10940	broad.mit.edu	37	8	99169980	99169980	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POPDC2	64091	broad.mit.edu	37	3	119367867	119367867	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAP2B	8613	broad.mit.edu	37	1	56989374	56989374	+	Intron	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAT	5471	broad.mit.edu	37	4	57266881	57266881	+	Intron	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL6	285755	broad.mit.edu	37	6	109726262	109726263	+	Intron	INS	-	A	A	rs71802700		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1H	57460	broad.mit.edu	37	12	63042360	63042360	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57385916	57385916	+	Intron	DEL	A	-	-	rs5876588		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD3	23683	broad.mit.edu	37	2	37516584	37516584	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRTFDC1	56952	broad.mit.edu	37	10	25145941	25145941	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79380956	79380956	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD2	84249	broad.mit.edu	37	5	139215492	139215492	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA4	5685	broad.mit.edu	37	15	78834748	78834748	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB1	5689	broad.mit.edu	37	6	170821867	170821867	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTDSS1	9791	broad.mit.edu	37	8	97307620	97307620	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	62017223	62017223	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRS	5802	broad.mit.edu	37	19	5183241	5183241	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29639010	29639010	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVT1	5820	broad.mit.edu	37	8	128901335	128901335	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP4	84440	broad.mit.edu	37	17	29771877	29771877	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB30	27314	broad.mit.edu	37	11	82752486	82752486	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51	5888	broad.mit.edu	37	15	41011072	41011072	+	Missense_Mutation	SNP	G	C	C	rs77029343		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REEP4	80346	broad.mit.edu	37	8	21997064	21997064	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103404404	103404404	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	175956199	175956199	+	Silent	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	176012449	176012449	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBG	57127	broad.mit.edu	37	1	156347138	156347138	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78763565	78763565	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK1	6093	broad.mit.edu	37	18	18690844	18690844	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10501631	10501631	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS27L	51065	broad.mit.edu	37	15	63447831	63447831	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RQCD1	9125	broad.mit.edu	37	2	219445507	219445507	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY3	22902	broad.mit.edu	37	4	71672318	71672318	+	Missense_Mutation	SNP	G	T	T	rs114009356	byFrequency;by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237608811	237608811	+	Silent	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAA1	6288	broad.mit.edu	37	11	18291448	18291448	+	3'UTR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARS2	54938	broad.mit.edu	37	19	39422912	39422912	+	5'Flank	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165950786	165950786	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52163071	52163071	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	3426317	3426317	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L3	266629	broad.mit.edu	37	22	30857437	30857437	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16B	89866	broad.mit.edu	37	1	177969543	177969543	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELPLG	6404	broad.mit.edu	37	12	109017870	109017870	+	Silent	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERHL	94009	broad.mit.edu	37	22	42947740	42947740	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42530630	42530630	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3A1	10291	broad.mit.edu	37	22	30741134	30741134	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPB	6439	broad.mit.edu	37	2	85893804	85893804	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGOL2	151246	broad.mit.edu	37	2	201435837	201435837	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3RF1	57630	broad.mit.edu	37	4	170169560	170169560	+	Intron	SNP	T	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3RF3	344558	broad.mit.edu	37	2	110015211	110015211	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A2	6565	broad.mit.edu	37	3	121621574	121621574	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A2	10568	broad.mit.edu	37	4	25671423	25671425	+	In_Frame_Del	DEL	CTG	-	-			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC37A3	84255	broad.mit.edu	37	7	140051137	140051137	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170244714	170244714	+	Silent	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20619307	20619307	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17897975	17897976	+	Intron	INS	-	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMEK2	57223	broad.mit.edu	37	2	55792108	55792108	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18883652	18883652	+	Silent	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70406653	70406653	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX20	124460	broad.mit.edu	37	16	50707574	50707574	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX6	58533	broad.mit.edu	37	14	35038167	35038167	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	23805979	23805979	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16032997	16032997	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52946109	52946109	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINLW1	57119	broad.mit.edu	37	20	44174238	44174238	+	Intron	SNP	G	A	A	rs2231834	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45616431	45616431	+	3'UTR	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH1	54434	broad.mit.edu	37	12	109209760	109209760	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD13	90627	broad.mit.edu	37	13	33751982	33751982	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD3NL	83930	broad.mit.edu	37	7	38256565	38256565	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK3	6788	broad.mit.edu	37	8	99608245	99608245	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD1	64420	broad.mit.edu	37	9	114841069	114841069	+	Intron	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP1	6847	broad.mit.edu	37	1	115455597	115455597	+	Intron	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46351054	46351054	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12173670	12173670	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPO2	171024	broad.mit.edu	37	4	119952472	119952472	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123781444	123781444	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK1	57551	broad.mit.edu	37	17	27849560	27849560	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3	729873	broad.mit.edu	37	17	36356064	36356064	+	Intron	SNP	G	A	A	rs143956138	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7L2	6934	broad.mit.edu	37	10	114925376	114925376	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	120973474	120973474	+	Intron	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137534503	137534503	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44782164	44782164	+	Silent	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM126A	84233	broad.mit.edu	37	11	85367357	85367357	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM156	80008	broad.mit.edu	37	4	39003220	39003221	+	Intron	DNP	GC	AT	AT			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP8	25816	broad.mit.edu	37	5	118728517	118728517	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM3	10612	broad.mit.edu	37	11	6472123	6472123	+	Silent	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77354666	77354666	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC38	55020	broad.mit.edu	37	22	46685772	46685772	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117618261	117618261	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UACA	55075	broad.mit.edu	37	15	70961491	70961491	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2Z	65264	broad.mit.edu	37	17	46990167	46990167	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42600601	42600601	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UFD1L	7353	broad.mit.edu	37	22	19463058	19463058	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A2	167127	broad.mit.edu	37	5	36066902	36066902	+	5'UTR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41759404	41759404	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNK	85451	broad.mit.edu	37	17	73814801	73814802	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCC	55245	broad.mit.edu	37	20	33969780	33969780	+	Missense_Mutation	SNP	C	T	T	rs143657027		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	120692061	120692061	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19414238	19414238	+	IGR	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	75645648	75645648	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	100277788	100277788	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127804127	127804127	+	IGR	SNP	T	C	C	rs149704644	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30085681	30085681	+	IGR	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	34611705	34611705	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	3470042	3470042	+	IGR	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	36789914	36789914	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	37990847	37990847	+	IGR	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48485686	48485687	+	IGR	DNP	GG	TT	TT			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	67694710	67694710	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80919450	80919451	+	IGR	DNP	CA	TG	TG	rs143174135	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93343142	93343142	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	114160987	114160987	+	IGR	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115449207	115449207	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115492241	115492241	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	116026409	116026409	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	13448011	13448011	+	IGR	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34462826	34462826	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42149446	42149446	+	IGR	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	44054154	44054154	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55196562	55196562	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61159893	61159893	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77327280	77327280	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77488557	77488557	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80661101	80661101	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80733174	80733174	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88007184	88007184	+	IGR	SNP	G	A	A	rs146552165	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	88546240	88546240	+	IGR	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44798102	44798102	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	60034910	60034910	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	62912366	62912366	+	IGR	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	66936398	66936398	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20193015	20193015	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20728806	20728806	+	IGR	SNP	T	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21921774	21921774	+	IGR	SNP	G	A	A	rs150343317	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22784331	22784331	+	IGR	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31175083	31175083	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60124863	60124863	+	IGR	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96587005	96587005	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	18026635	18026635	+	IGR	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	25031519	25031519	+	IGR	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32850919	32850919	+	IGR	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33547785	33547785	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33951506	33951506	+	IGR	SNP	A	G	G	rs147873420	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46393632	46393632	+	IGR	SNP	A	G	G	rs7184796		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	49054714	49054714	+	IGR	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51553014	51553014	+	IGR	DEL	A	-	-	rs35930026		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60877138	60877138	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	64703653	64703653	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76852557	76852557	+	IGR	DEL	T	-	-	rs77790186		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	77600130	77600130	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	7994147	7994147	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	80439092	80439092	+	IGR	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21536653	21536653	+	IGR	SNP	G	A	A	rs76090156		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	68234120	68234120	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	70306570	70306570	+	IGR	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26242895	26242895	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39404593	39404593	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65931366	65931366	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22706400	22706400	+	IGR	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101117526	101117526	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	114579642	114579642	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142605919	142605919	+	IGR	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	14390853	14390853	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149049724	149049724	+	IGR	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	18280439	18280439	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192949528	192949528	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194807216	194807216	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	215594598	215594598	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229197294	229197321	+	IGR	DEL	GAAGGAAGGAAGGAAGGAAGGAAGGAAC	-	-	rs28398363	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	232374279	232374279	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	46505393	46505393	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	1719871	1719871	+	IGR	DEL	G	-	-	rs11478454		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	18963669	18963669	+	IGR	SNP	C	T	T	rs143959096	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29459309	29459309	+	IGR	SNP	A	T	T	rs144233009	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29592485	29592485	+	IGR	SNP	T	C	C	rs146717492		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29605155	29605155	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	32913298	32913298	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	42707024	42707025	+	IGR	INS	-	C	C	rs145792899	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	55424309	55424309	+	IGR	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	59752009	59752009	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10426013	10426013	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10722540	10722540	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11122396	11122396	+	IGR	SNP	C	T	T	rs77943088		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14374724	14374724	+	IGR	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	33568557	33568557	+	IGR	SNP	G	A	A	rs144217240	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9443486	9443486	+	IGR	SNP	A	G	G	rs138938660	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17822290	17822290	+	IGR	SNP	G	A	A	rs148052813		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	44958468	44958468	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	45437729	45437729	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	45439647	45439647	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105143135	105143135	+	IGR	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106870132	106870132	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132769046	132769046	+	IGR	SNP	C	A	A	rs143552213	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139659421	139659421	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	158575935	158575935	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168133418	168133418	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17063657	17063657	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	188690568	188690568	+	IGR	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	204716997	204716997	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	215498735	215498735	+	IGR	SNP	T	C	C	rs138966137	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21630269	21630269	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	22754817	22754817	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	235541369	235541370	+	IGR	DEL	AA	-	-	rs34528078		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	240854749	240854749	+	IGR	SNP	A	C	C	rs116172144	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	35811413	35811414	+	IGR	INS	-	A	A	rs146275334	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	7345248	7345248	+	IGR	SNP	T	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91639388	91639388	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91657503	91657503	+	IGR	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92282662	92282662	+	IGR	SNP	G	T	T	rs74761142		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	102549341	102549341	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	102999825	102999825	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	125516778	125516778	+	IGR	SNP	A	C	C	rs150396853	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	152700046	152700046	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	152957066	152957066	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	154333096	154333096	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	1637548	1637548	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	177427635	177427635	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	20639726	20639727	+	IGR	INS	-	A	A	rs147569221	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	3664682	3664682	+	IGR	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74185640	74185640	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96472845	96472845	+	IGR	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111611414	111611414	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	12457644	12457644	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	125139122	125139122	+	IGR	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134558588	134558588	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17528738	17528738	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190569728	190569738	+	IGR	DEL	AAGTCGGAACT	-	-	rs67581894	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36602328	36602328	+	IGR	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49165600	49165600	+	IGR	SNP	T	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	68265207	68265207	+	IGR	SNP	C	T	T	rs4544762		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	76036094	76036094	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	114229268	114229268	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	131447432	131447433	+	IGR	DEL	TG	-	-			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	137814713	137814713	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	145108365	145108365	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180557262	180557262	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25911224	25911224	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40123944	40123944	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	50605418	50605418	+	IGR	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	52055310	52055310	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	95427276	95427276	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	98015908	98015908	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	101602518	101602518	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	101602520	101602520	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	169290934	169290934	+	IGR	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	33310124	33310124	+	IGR	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	68079445	68079445	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78443421	78443421	+	IGR	SNP	T	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100635206	100635206	+	IGR	SNP	C	T	T	rs112934443		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	125405549	125405549	+	IGR	DEL	A	-	-			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131346663	131346663	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141650463	141650463	+	IGR	SNP	A	G	G	rs117122578	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	150607517	150607517	+	IGR	SNP	T	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152841471	152841471	+	IGR	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	155727283	155727283	+	IGR	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31753107	31753107	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	49478072	49478072	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57661462	57661462	+	IGR	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57699124	57699124	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61660964	61660964	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61819859	61819859	+	IGR	SNP	C	A	A	rs75594701	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63353878	63353878	+	IGR	DEL	T	-	-			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	76693235	76693235	+	IGR	SNP	G	A	A	rs148017217	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	94191131	94191131	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111634242	111634242	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	113206441	113206442	+	IGR	INS	-	G	G	rs140493409	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116286810	116286810	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	11747579	11747579	+	IGR	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	126514979	126514979	+	IGR	SNP	A	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20540662	20540662	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36638315	36638315	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	57817821	57817821	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83204045	83204045	+	IGR	SNP	G	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89583384	89583384	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93231821	93231821	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94047009	94047009	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	99329695	99329696	+	IGR	INS	-	TGAC	TGAC	rs147368545	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	117634983	117634983	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	117635010	117635010	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	18179917	18179917	+	IGR	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	2857412	2857412	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	33539406	33539406	+	IGR	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	37380610	37380610	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	37380641	37380641	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	47195301	47195301	+	IGR	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	5257213	5257213	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	6278777	6278777	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66343627	66343627	+	IGR	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66343631	66343631	+	IGR	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66482046	66482046	+	IGR	SNP	T	A	A	rs139348043		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68405348	68405349	+	IGR	INS	-	T	T	rs140647636		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68468683	68468683	+	IGR	SNP	T	A	A	rs150897858	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68477375	68477375	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68490086	68490086	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76509846	76509846	+	IGR	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	82753466	82753466	+	IGR	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	83267623	83267623	+	IGR	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	111933181	111933181	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	126359986	126359986	+	IGR	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	80943991	80943991	+	IGR	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28582695	28582695	+	IGR	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59005184	59005184	+	IGR	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59012081	59012081	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59017565	59017565	+	IGR	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	7311476	7311476	+	IGR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9932810	9932810	+	IGR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP7	6845	broad.mit.edu	37	X	155149585	155149585	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VASP	7408	broad.mit.edu	37	19	46027906	46027906	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASH2P	375260	broad.mit.edu	37	2	114345514	114345514	+	Intron	SNP	C	T	T	rs142235414	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASH2P	375260	broad.mit.edu	37	2	114345519	114345519	+	Intron	SNP	T	A	A	rs150229777	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85771114	85771114	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177017722	177017722	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK3	65267	broad.mit.edu	37	X	54321219	54321219	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78253726	78253726	+	Intron	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168105791	168105791	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB20	26137	broad.mit.edu	37	3	114062455	114062455	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766701	77766701	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZHX1	11244	broad.mit.edu	37	8	124267459	124267459	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN4	387032	broad.mit.edu	37	6	28213679	28213679	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45966410	45966410	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF318	24149	broad.mit.edu	37	6	43323078	43323078	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72627696	72627696	+	Intron	SNP	A	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF442	79973	broad.mit.edu	37	19	12462770	12462770	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF496	84838	broad.mit.edu	37	1	247464457	247464457	+	Silent	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF599	148103	broad.mit.edu	37	19	35251308	35251308	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF608	57507	broad.mit.edu	37	5	123973647	123973647	+	Intron	SNP	T	C	C			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71575083	71575083	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22375805	22375805	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN29	146050	broad.mit.edu	37	15	43653142	43653142	+	3'UTR	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWINT	11130	broad.mit.edu	37	10	58118172	58118172	+	3'UTR	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3497919	3497919	+	Intron	SNP	C	G	G			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20614029	20614029	+	Intron	SNP	A	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	27298968	27298968	+	Intron	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	70492943	70492943	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142623788	142623788	+	Intron	DEL	T	-	-	rs149122083		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143147886	143147886	+	Intron	SNP	A	G	G	rs75201259		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143147897	143147897	+	Intron	SNP	C	T	T	rs77736075		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159941516	159941516	+	Intron	SNP	C	T	T	rs75860899	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	173274270	173274270	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16255365	16255365	+	5'Flank	SNP	C	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14482629	14482629	+	Intron	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190827788	190827788	+	Intron	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	40542654	40542654	+	Intron	SNP	T	C	C	rs137982179	by1000genomes	TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
