Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2ML1	144568	broad.mit.edu	37	12	8991842	8991842	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AAK1	22848	broad.mit.edu	37	2	69769785	69769785	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASDH	132949	broad.mit.edu	37	4	57220929	57220929	+	Silent	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87035540	87035540	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20725459	20725459	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20792926	20792926	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC10	89845	broad.mit.edu	37	6	43413494	43413494	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48138955	48138955	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48162426	48162426	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100471569	100471569	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148577544	148577544	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31587576	31587576	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32338312	32338312	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACIN1	22985	broad.mit.edu	37	14	23532768	23532768	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX2	8309	broad.mit.edu	37	3	58516408	58516408	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL1	2180	broad.mit.edu	37	4	185683736	185683736	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL3	2181	broad.mit.edu	37	2	223806375	223806375	+	3'UTR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT1	139741	broad.mit.edu	37	X	127186048	127186048	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87816014	87816014	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM28	10863	broad.mit.edu	37	8	24187507	24187507	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39626920	39626920	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106512255	106512255	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106919345	106919345	+	RNA	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107022445	107022445	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33576362	33576362	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43858455	43858455	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84651148	84651148	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1405977	1405977	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAR	103	broad.mit.edu	37	1	154562626	154562626	+	Intron	DEL	C	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAT1	23536	broad.mit.edu	37	16	75634175	75634175	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24795299	24795299	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49176786	49176786	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131912769	131912769	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	132051816	132051816	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AEBP2	121536	broad.mit.edu	37	12	19610309	19610309	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	87957988	87957988	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148068832	148068832	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100690798	100690798	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFP	174	broad.mit.edu	37	4	74316541	74316541	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236750805	236750805	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150814462	150814462	+	Silent	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP6	414189	broad.mit.edu	37	10	51768441	51768441	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87412530	87412530	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGFG2	3268	broad.mit.edu	37	7	100151876	100151876	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100349873	100349873	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100376370	100376370	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGR3	155465	broad.mit.edu	37	7	16904134	16904134	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106967275	106967275	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77763344	77763344	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1CL1	340811	broad.mit.edu	37	10	5204854	5204854	+	RNA	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOTL1	154810	broad.mit.edu	37	11	94586993	94586993	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41591607	41591607	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114179250	114179250	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD12	23253	broad.mit.edu	37	18	9258375	9258375	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD24	170961	broad.mit.edu	37	19	4210401	4210402	+	Intron	INS	-	A	A	rs138484224	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD44	91526	broad.mit.edu	37	2	197878439	197878439	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99462555	99462560	+	Intron	DEL	CCTAGT	-	-	rs62774960		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5808750	5808750	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101231844	101231844	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4E1	23431	broad.mit.edu	37	15	51237796	51237796	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLP1	333	broad.mit.edu	37	19	36369001	36369001	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB48R	55911	broad.mit.edu	37	16	28508735	28508735	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP3	26286	broad.mit.edu	37	22	43206658	43206658	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP10	79658	broad.mit.edu	37	4	148894065	148894065	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144466423	144466423	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP20	57569	broad.mit.edu	37	11	110462849	110462849	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119112158	119112158	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156917106	156917106	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF15	22899	broad.mit.edu	37	17	8224231	8224231	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF1	9138	broad.mit.edu	37	19	42396215	42396215	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155934701	155934701	+	Intron	DEL	G	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX5	64860	broad.mit.edu	37	X	101858564	101858564	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNT2	9915	broad.mit.edu	37	15	80869073	80869073	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNT	405	broad.mit.edu	37	1	150814757	150814757	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSK	153642	broad.mit.edu	37	5	94890989	94890989	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART3	419	broad.mit.edu	37	4	77025166	77025166	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155313628	155313628	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1748887	1748887	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176847250	176847250	+	Intron	SNP	G	T	T	rs151190335	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119903436	119903436	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF2	1386	broad.mit.edu	37	2	175979488	175979488	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96784090	96784090	+	Silent	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25281145	25281145	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42490150	42490150	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203696674	203696674	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A2	23545	broad.mit.edu	37	12	124236931	124236931	+	Silent	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1H	51606	broad.mit.edu	37	8	54729955	54729955	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142257451	142257451	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142281172	142281172	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN10	25814	broad.mit.edu	37	22	46239519	46239519	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZGP1	563	broad.mit.edu	37	7	99569382	99569382	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039631	11039631	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANP	54971	broad.mit.edu	37	16	88039567	88039567	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L1	84726	broad.mit.edu	37	9	134319466	134319466	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ1B	9031	broad.mit.edu	37	7	72861596	72861596	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33645040	33645040	+	3'UTR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDH1	622	broad.mit.edu	37	3	197241142	197241142	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEX2	84707	broad.mit.edu	37	X	102564634	102564634	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLM	641	broad.mit.edu	37	15	91326038	91326038	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMX	660	broad.mit.edu	37	X	15540369	15540369	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112940759	112940759	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140507908	140507908	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32907305	32907314	+	Frame_Shift_Del	DEL	CCAGCCACCA	-	-	rs55821741		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32914374	32914374	+	Missense_Mutation	SNP	G	C	C	rs80358820		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCC3	79184	broad.mit.edu	37	X	154348415	154348415	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD1	54014	broad.mit.edu	37	21	40570870	40570870	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49662731	49662731	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49694598	49694598	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUD13	84811	broad.mit.edu	37	11	116633908	116633908	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf72	196740	broad.mit.edu	37	10	50255129	50255129	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf66	220004	broad.mit.edu	37	11	61249738	61249738	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf88	399949	broad.mit.edu	37	11	111386748	111386748	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf10	60314	broad.mit.edu	37	12	53700879	53700879	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf60	144608	broad.mit.edu	37	12	14959635	14959635	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97043856	97043856	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97052045	97052045	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97078525	97078525	+	Intron	SNP	G	T	T	rs115742269	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf26	122046	broad.mit.edu	37	13	31526711	31526711	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24923730	24923730	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf32	497661	broad.mit.edu	37	18	47009932	47009932	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30476239	30476239	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf112	55732	broad.mit.edu	37	1	169773226	169773226	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf212	113444	broad.mit.edu	37	1	35321354	35321354	+	5'UTR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf68	100129271	broad.mit.edu	37	1	152692118	152692118	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf14	57415	broad.mit.edu	37	3	62307739	62307739	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf19	51244	broad.mit.edu	37	3	14703252	14703252	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5AR1	728	broad.mit.edu	37	19	47823367	47823367	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41161794	41161794	+	Splice_Site	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41176655	41176655	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf174	387104	broad.mit.edu	37	6	127797313	127797313	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf221	154288	broad.mit.edu	37	6	74072764	74072764	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf221	154288	broad.mit.edu	37	6	74073205	74073205	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf60	154743	broad.mit.edu	37	7	112461933	112461933	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf150	286343	broad.mit.edu	37	9	12775758	12775758	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf79	286234	broad.mit.edu	37	9	90500350	90500350	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf79	286234	broad.mit.edu	37	9	90501374	90501374	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA8	767	broad.mit.edu	37	8	61144930	61144930	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24464370	24464370	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140848421	140848421	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140852090	140852090	+	Silent	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140865867	140865867	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2714783	2714783	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2786943	2786943	+	Silent	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG2	10369	broad.mit.edu	37	22	36974667	36974667	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86115950	86115950	+	3'UTR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCB	797	broad.mit.edu	37	11	15098940	15098940	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO1	57658	broad.mit.edu	37	12	54108601	54108602	+	Intron	DEL	AC	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7797239	7797239	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAND2	23066	broad.mit.edu	37	3	12858058	12858058	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44143772	44143772	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP2	835	broad.mit.edu	37	7	142991376	142991376	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31690715	31690715	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC134	79879	broad.mit.edu	37	22	42221805	42221805	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC150	284992	broad.mit.edu	37	2	197534689	197534689	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC155	147872	broad.mit.edu	37	19	49901202	49901202	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC155	147872	broad.mit.edu	37	19	49916136	49916136	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119916765	119916765	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111336666	111336666	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85630467	85630467	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNT1	904	broad.mit.edu	37	12	49089837	49089837	+	Silent	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6A	908	broad.mit.edu	37	7	56126388	56126388	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33266325	33266327	+	In_Frame_Del	DEL	CAA	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1C	911	broad.mit.edu	37	1	158260705	158260705	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD3EAP	10849	broad.mit.edu	37	19	45912708	45912708	+	Silent	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD48	962	broad.mit.edu	37	1	160681540	160681540	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC5L	988	broad.mit.edu	37	6	44413375	44413375	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC73	79577	broad.mit.edu	37	1	193110980	193110980	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24487732	24487732	+	3'UTR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21854915	21854915	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19612753	19612753	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19612755	19612755	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59206470	59206470	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25531984	25531984	+	3'UTR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31299654	31299654	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR3	222256	broad.mit.edu	37	7	105660902	105660902	+	Silent	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK14	5218	broad.mit.edu	37	7	90492456	90492456	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK20	23552	broad.mit.edu	37	9	90588911	90588911	+	Silent	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5R1	8851	broad.mit.edu	37	17	30815606	30815606	+	3'UTR	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2A	1029	broad.mit.edu	37	9	21971024	21971024	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM5	1048	broad.mit.edu	37	19	42218708	42218708	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34994298	34994298	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR2	3080	broad.mit.edu	37	1	196918790	196918790	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFI	3426	broad.mit.edu	37	4	110687940	110687940	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGNL1	84952	broad.mit.edu	37	15	57730396	57730399	+	Frame_Shift_Del	DEL	ACAT	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGNL1	84952	broad.mit.edu	37	15	57795358	57795358	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGNL1	84952	broad.mit.edu	37	15	57820832	57820832	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD4	1108	broad.mit.edu	37	12	6711247	6711247	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61750662	61750662	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN1	1123	broad.mit.edu	37	2	175665068	175665068	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL1	91851	broad.mit.edu	37	X	109932109	109932109	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL1	91851	broad.mit.edu	37	X	109937401	109937401	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB1	10519	broad.mit.edu	37	15	90774105	90774105	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIR1	9541	broad.mit.edu	37	2	175252428	175252428	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP1	23332	broad.mit.edu	37	2	122176272	122176272	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN6	1185	broad.mit.edu	37	1	11896707	11896708	+	Intron	INS	-	G	G	rs143389418	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN23	137075	broad.mit.edu	37	8	8560235	8560235	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123376820	123376820	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99012586	99012586	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57937831	57937831	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87683091	87683091	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNN1	1264	broad.mit.edu	37	19	11651957	11651957	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNN3	1266	broad.mit.edu	37	1	95365110	95365110	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNPY3	10695	broad.mit.edu	37	6	42906450	42906450	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNST	163882	broad.mit.edu	37	1	246784904	246784904	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41386975	41386975	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205042109	205042109	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100169965	100169965	+	Silent	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125494979	125494979	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103427760	103427760	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75830863	75830863	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101806955	101806955	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70854181	70854181	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94037114	94037114	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94040380	94040380	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139868025	139868025	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7420262	7420262	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7421151	7421151	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111007803	111007803	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3	1285	broad.mit.edu	37	2	228155616	228155616	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10080477	10080477	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10099656	10099656	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130284242	130284242	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48617273	48617273	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70935644	70935644	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO1C	23603	broad.mit.edu	37	12	109094897	109094897	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX7B2	170712	broad.mit.edu	37	4	46737019	46737040	+	Frame_Shift_Del	DEL	TCTATTCCAATCTGAGTGGCTG	-	-	rs140822119	byFrequency	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131348494	131348494	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207890735	207890735	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3	10488	broad.mit.edu	37	9	35733175	35733175	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16949896	16949896	+	Intron	SNP	T	G	G	rs146963553	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRX	1406	broad.mit.edu	37	19	48343009	48343009	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSHL1	1444	broad.mit.edu	37	17	61987298	61987298	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2857579	2857579	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4236320	4236320	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113568983	113568983	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113648936	113648936	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113871484	113871484	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN3	1448	broad.mit.edu	37	4	71114958	71114958	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1E	1454	broad.mit.edu	37	22	38689321	38689321	+	Missense_Mutation	SNP	C	G	G	rs77945315	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	79878656	79878656	+	5'Flank	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80772119	80772120	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80819157	80819157	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80831126	80831126	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80831332	80831332	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11346578	11346578	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16984783	16984784	+	Intron	INS	-	AAGGG	AAGGG	rs144169849	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17157575	17157575	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148494875	148494875	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL12	6387	broad.mit.edu	37	10	44873762	44873762	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL14	9547	broad.mit.edu	37	5	134907615	134907615	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156753138	156753138	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC1	1538	broad.mit.edu	37	X	83126627	83126627	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27B1	1594	broad.mit.edu	37	12	58156960	58156960	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A13	1553	broad.mit.edu	37	19	41597911	41597911	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP39A1	51302	broad.mit.edu	37	6	46598671	46598671	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM2	23500	broad.mit.edu	37	6	39851749	39851749	+	Silent	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57535035	57535035	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	59002177	59002177	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	122022651	122022651	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBT	1629	broad.mit.edu	37	1	100681576	100681576	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88886189	88886189	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50196459	50196459	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCK	1633	broad.mit.edu	37	4	71889174	71889174	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1C	64421	broad.mit.edu	37	10	14964938	14964938	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCT	1638	broad.mit.edu	37	13	95121352	95121373	+	Intron	DEL	GAAATTTCTGAATTTGTACTCT	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCT	1638	broad.mit.edu	37	13	95131180	95131180	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDOST	1650	broad.mit.edu	37	1	20987363	20987363	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX43	55510	broad.mit.edu	37	6	74104455	74104455	+	5'UTR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX43	55510	broad.mit.edu	37	6	74104733	74104733	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB126	81623	broad.mit.edu	37	20	123049	123049	+	5'Flank	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1B	55789	broad.mit.edu	37	5	59934781	59934781	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1B	55789	broad.mit.edu	37	5	59983115	59983115	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14724830	14724830	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137150706	137150706	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137330263	137330263	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHCR7	1717	broad.mit.edu	37	11	71155932	71155932	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHTKD1	55526	broad.mit.edu	37	10	12133734	12133734	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	349042	349042	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	463824	463824	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC1	116093	broad.mit.edu	37	2	189599547	189599547	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKFZP586I1420	222161	broad.mit.edu	37	7	30412252	30412252	+	RNA	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	108124822	108124822	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLD	1738	broad.mit.edu	37	7	107558682	107558682	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG1	1739	broad.mit.edu	37	3	196783954	196783955	+	Intron	INS	-	T	T	rs150656429	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83445440	83445440	+	Intron	SNP	T	C	C	rs72337179		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMKN	93099	broad.mit.edu	37	19	35989865	35989865	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13729635	13729635	+	Silent	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11550666	11550666	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230253033	230253033	+	Silent	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117817213	117817213	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	129218009	129218009	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	129224177	129224177	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111503636	111503636	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DONSON	29980	broad.mit.edu	37	21	34951806	34951806	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	115948656	115948656	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162902240	162902240	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	153659755	153659755	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPT	1805	broad.mit.edu	37	1	168683713	168683713	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P4	442523	broad.mit.edu	37	7	89753405	89753405	+	RNA	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	63962929	63962929	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117320000	117320000	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71778303	71778303	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71788996	71788996	+	Silent	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108343296	108343296	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F8	79733	broad.mit.edu	37	11	19253732	19253732	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDDM3A	10876	broad.mit.edu	37	14	21216213	21216213	+	3'UTR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEA1	8411	broad.mit.edu	37	12	93170697	93170697	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	43933348	43933348	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC1	114327	broad.mit.edu	37	6	52380672	52380672	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110864392	110864392	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C4	192670	broad.mit.edu	37	1	36315753	36315753	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4B	1975	broad.mit.edu	37	12	53431327	53431327	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4E1B	253314	broad.mit.edu	37	5	176064757	176064757	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL1	1994	broad.mit.edu	37	19	8032642	8032642	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL2	1993	broad.mit.edu	37	9	23732365	23732365	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL4	1996	broad.mit.edu	37	1	50610672	50610673	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	36895172	36895172	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	112013872	112013872	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPC2	26122	broad.mit.edu	37	2	149447959	149447959	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97185324	97185324	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX1	2052	broad.mit.edu	37	1	226032230	226032230	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERRFI1	54206	broad.mit.edu	37	1	8075693	8075693	+	5'UTR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRP1	54845	broad.mit.edu	37	8	95686684	95686684	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128359204	128359204	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV3L	440695	broad.mit.edu	37	1	157069071	157069071	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV6	2120	broad.mit.edu	37	12	11972068	11972068	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6	54536	broad.mit.edu	37	10	94679738	94679738	+	Splice_Site	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72127698	72127698	+	Silent	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66102467	66102467	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6191317	6191317	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP5	2171	broad.mit.edu	37	8	82195599	82195599	+	Splice_Site	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63412181	63412182	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM124A	220108	broad.mit.edu	37	13	51805480	51805480	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139269024	139269024	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139424087	139424087	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160A2	84067	broad.mit.edu	37	11	6238994	6238994	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM161A	84140	broad.mit.edu	37	2	62067078	62067078	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM176A	84141	broad.mit.edu	37	2	75745300	75745300	+	5'UTR	DEL	G	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM178A	55719	broad.mit.edu	37	10	102684599	102684599	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179A	165186	broad.mit.edu	37	2	29206313	29206313	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM189A2	9413	broad.mit.edu	37	9	71992730	71992730	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A1	407738	broad.mit.edu	37	3	68587942	68587942	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A3	284467	broad.mit.edu	37	1	113269224	113269224	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177250007	177250007	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75C1	441452	broad.mit.edu	37	9	90538204	90538217	+	Frame_Shift_Del	DEL	CAGAGTCGTCCCAA	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM86B1	85002	broad.mit.edu	37	8	12040294	12040294	+	3'UTR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45633586	45633586	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163030271	163030271	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	98983292	98983292	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48800965	48800965	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48905060	48905060	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO38	81545	broad.mit.edu	37	5	147781509	147781509	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW12	285231	broad.mit.edu	37	3	48420863	48420863	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40408112	40408112	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157768055	157768057	+	Intron	DEL	TTA	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRLB	127943	broad.mit.edu	37	1	161696817	161696817	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGR	2268	broad.mit.edu	37	1	27956362	27956362	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIBIN	387758	broad.mit.edu	37	11	27016184	27016184	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1	27145	broad.mit.edu	37	6	76028626	76028626	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1	27145	broad.mit.edu	37	6	76029523	76029523	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP11	51303	broad.mit.edu	37	12	49318374	49318374	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58095709	58095709	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128492555	128492555	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216288754	216288754	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXA2	3170	broad.mit.edu	37	20	22562483	22562483	+	3'UTR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXJ2	55810	broad.mit.edu	37	12	8195141	8195141	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK1	221937	broad.mit.edu	37	7	4780475	4780476	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79371639	79371640	+	Intron	INS	-	T	T	rs138438777	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG2B	441581	broad.mit.edu	37	10	135439148	135439148	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13779903	13779904	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD8	83786	broad.mit.edu	37	11	65167168	65167168	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32792874	32792874	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN3	29999	broad.mit.edu	37	7	127239453	127239453	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162380478	162380478	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FURIN	5045	broad.mit.edu	37	15	91419555	91419555	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G3BP2	9908	broad.mit.edu	37	4	76580892	76580892	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46967293	46967293	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46053535	46053535	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA1	2623	broad.mit.edu	37	X	48652706	48652706	+	3'UTR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBE1	2632	broad.mit.edu	37	3	81692233	81692233	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCG	2641	broad.mit.edu	37	2	163000564	163000564	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF10	2662	broad.mit.edu	37	10	48426496	48426496	+	3'UTR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF2	26058	broad.mit.edu	37	2	233684583	233684583	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC2	54810	broad.mit.edu	37	1	78509353	78509353	+	5'Flank	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS3	169792	broad.mit.edu	37	9	4117825	4117828	+	Frame_Shift_Del	DEL	GCGG	-	-	rs147451000	byFrequency	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL3	26354	broad.mit.edu	37	3	52723250	52723250	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPDA2	132789	broad.mit.edu	37	4	44705105	44705105	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP6	51206	broad.mit.edu	37	19	55527188	55527188	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92346033	92346033	+	Missense_Mutation	SNP	G	T	T	rs140805446		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	93982510	93982510	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176883281	176883281	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154147167	154147167	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25510201	25510201	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR97	222487	broad.mit.edu	37	16	57712186	57712186	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90398021	90398021	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5B	51704	broad.mit.edu	37	16	19873247	19873247	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123474050	123474050	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1C	54762	broad.mit.edu	37	3	113619945	113619945	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB14	2888	broad.mit.edu	37	2	165378328	165378328	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11765445	11765446	+	Intron	INS	-	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87721371	87721371	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120668026	120668026	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13716362	13716362	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13764924	13764924	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146686077	146686077	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM3	2913	broad.mit.edu	37	7	86416430	86416430	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126538203	126538204	+	Intron	DNP	CA	TT	TT			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRXCR1	389207	broad.mit.edu	37	4	42895485	42895485	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1	83445	broad.mit.edu	37	12	13243530	13243530	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1	83445	broad.mit.edu	37	12	13256246	13256246	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2H2C	728340	broad.mit.edu	37	5	68863489	68863489	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GVIN1	387751	broad.mit.edu	37	11	6739341	6739341	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC2	29915	broad.mit.edu	37	12	104480827	104480827	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45645509	45645509	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM	220296	broad.mit.edu	37	11	124792485	124792485	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXB	3074	broad.mit.edu	37	5	74014818	74014818	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXIM1	10614	broad.mit.edu	37	17	43227346	43227346	+	Silent	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	41979227	41979227	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	42048566	42048566	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29855505	29855505	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCR	3156	broad.mit.edu	37	5	74646642	74646642	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPL	3191	broad.mit.edu	37	19	39329420	39329420	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC11	3227	broad.mit.edu	37	12	54367588	54367588	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC5	3222	broad.mit.edu	37	12	54427126	54427126	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC9	3225	broad.mit.edu	37	12	54393959	54393972	+	5'UTR	DEL	AAAACCCCGTTACG	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS3	84343	broad.mit.edu	37	3	148871238	148871238	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186394878	186394878	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA6	3310	broad.mit.edu	37	1	161495567	161495567	+	Silent	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPBP1	23640	broad.mit.edu	37	19	55776662	55776662	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22183555	22183555	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63256808	63256808	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63257056	63257056	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUS1	3364	broad.mit.edu	37	7	48016360	48016360	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71012832	71012832	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IAPP	3375	broad.mit.edu	37	12	21531177	21531177	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFRD1	3475	broad.mit.edu	37	7	112108013	112108013	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129175648	129175648	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT52	51098	broad.mit.edu	37	20	42223289	42223289	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP4	3487	broad.mit.edu	37	17	38612887	38612887	+	3'UTR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118647597	118647597	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130413381	130413381	+	Intron	DEL	C	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL10	3586	broad.mit.edu	37	1	206945637	206945637	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILF3	3609	broad.mit.edu	37	19	10789315	10789315	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPDH1	3614	broad.mit.edu	37	7	128041005	128041005	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41729647	41729647	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4A	3631	broad.mit.edu	37	2	99187105	99187105	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS4	8471	broad.mit.edu	37	X	107979602	107979602	+	5'UTR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52177949	52177949	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42452120	42452120	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31429890	31429890	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31372797	31372797	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB8	3696	broad.mit.edu	37	7	20449250	20449250	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102144938	102144938	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26835496	26835496	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17949054	17949054	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39739451	39739452	+	Intron	INS	-	G	G	rs139816255	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAL1	3730	broad.mit.edu	37	X	8503728	8503728	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2B	8850	broad.mit.edu	37	3	20113878	20113879	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC1	3746	broad.mit.edu	37	11	17762014	17762014	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC1	3746	broad.mit.edu	37	11	17793833	17793833	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	119914559	119914559	+	5'UTR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169894018	169894018	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ10	3766	broad.mit.edu	37	1	160017267	160017267	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK13	56659	broad.mit.edu	37	14	90650564	90650564	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78647067	78647067	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78704396	78704396	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78785236	78785236	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB2	10242	broad.mit.edu	37	3	178390584	178390584	+	Intron	DEL	C	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN2	3781	broad.mit.edu	37	5	113822632	113822632	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44177124	44177124	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202743772	202743772	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53244883	53244883	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55956349	55956349	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142651423	142651423	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0748	9840	broad.mit.edu	37	12	55360038	55360038	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0753	9851	broad.mit.edu	37	17	6511817	6511817	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	96973331	96973331	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8813219	8813219	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24037816	24037816	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1239	57495	broad.mit.edu	37	4	37440761	37440761	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1407	57577	broad.mit.edu	37	3	113737669	113737669	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94053172	94053172	+	Missense_Mutation	SNP	C	A	A	rs138158671		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43505741	43505744	+	Frame_Shift_Del	DEL	ACAC	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13B	23303	broad.mit.edu	37	8	28981473	28981473	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39698630	39698630	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF27	55582	broad.mit.edu	37	9	86498781	86498781	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	170024427	170024427	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55341597	55341597	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36353215	36353215	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL32	114792	broad.mit.edu	37	6	97423825	97423825	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135025384	135025384	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT5	3852	broad.mit.edu	37	12	52910570	52910570	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-1	81851	broad.mit.edu	37	17	39197230	39197230	+	Silent	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP25-1	100131902	broad.mit.edu	37	21	31662087	31662087	+	5'Flank	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-7	440050	broad.mit.edu	37	11	71238469	71238469	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25910015	25910016	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR2	283455	broad.mit.edu	37	12	118020071	118020071	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6020741	6020741	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112460430	112460430	+	Silent	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107596343	107596344	+	Intron	INS	-	T	T	rs145671563	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133914470	133914470	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS2	29956	broad.mit.edu	37	1	150939980	150939980	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS4	79603	broad.mit.edu	37	19	8326502	8326502	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN1	3933	broad.mit.edu	37	9	138415883	138415883	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP1	3936	broad.mit.edu	37	13	46704868	46704868	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS14	56891	broad.mit.edu	37	19	40196769	40196769	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71918213	71918226	+	Frame_Shift_Del	DEL	CATTCCCAAGGGAG	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48647110	48647110	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54778671	54778671	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54756656	54756656	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPN	643418	broad.mit.edu	37	10	90537933	90537933	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD1	55788	broad.mit.edu	37	6	70423728	70423728	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMLN	89782	broad.mit.edu	37	3	197762926	197762926	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNA	4000	broad.mit.edu	37	1	156096606	156096606	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148012892	148012892	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94656624	94656624	+	5'Flank	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94656780	94656780	+	5'Flank	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285692	285692	broad.mit.edu	37	5	9890386	9890386	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC400940	400940	broad.mit.edu	37	2	6121525	6121525	+	5'Flank	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC401010	401010	broad.mit.edu	37	2	132202007	132202007	+	5'UTR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC441204	441204	broad.mit.edu	37	7	26507490	26507490	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148951273	148951273	+	RNA	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91805871	91805871	+	RNA	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160999840	160999840	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT1	79888	broad.mit.edu	37	5	1501647	1501647	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99771978	99771978	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN1	57622	broad.mit.edu	37	19	39805953	39805953	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133861613	133861613	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133916125	133916125	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	140995833	140995833	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141259351	141259351	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170013799	170013799	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC33	375387	broad.mit.edu	37	3	196387777	196387777	+	Silent	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC69	100130742	broad.mit.edu	37	8	92231248	92231248	+	3'UTR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTM2	654429	broad.mit.edu	37	12	1940215	1940215	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33482463	33482463	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235897225	235897225	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235971728	235971728	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39900087	39900087	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140993845	140993845	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140996477	140996477	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC2	51438	broad.mit.edu	37	X	141291284	141291284	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140984190	140984190	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78338500	78338501	+	Intron	DEL	AT	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANEA	79694	broad.mit.edu	37	6	96053765	96053765	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K13	9175	broad.mit.edu	37	3	185135543	185135543	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K3	4215	broad.mit.edu	37	17	61714450	61714450	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71216701	71216701	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K3	8491	broad.mit.edu	37	2	39487787	39487787	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK4	5596	broad.mit.edu	37	18	48181550	48181550	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK9	5601	broad.mit.edu	37	5	179674963	179674963	+	Intron	DEL	C	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119727533	119727533	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARS	4141	broad.mit.edu	37	12	57908546	57908546	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186951577	186951577	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD1	4152	broad.mit.edu	37	18	47800735	47800735	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC4R	4160	broad.mit.edu	37	18	58039336	58039336	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L	23263	broad.mit.edu	37	13	113668972	113668972	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCFD2	90411	broad.mit.edu	37	2	47136092	47136092	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47530415	47530415	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME3	10873	broad.mit.edu	37	11	86185291	86185291	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	169211723	169211724	+	Intron	INS	-	AT	AT	rs146685329	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	169230243	169230243	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42139211	42139211	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37391000	37391000	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112754908	112754908	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD8	256471	broad.mit.edu	37	4	128861088	128861088	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141721342	141721342	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141734424	141734424	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MITD1	129531	broad.mit.edu	37	2	99788098	99788098	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKLN1	4289	broad.mit.edu	37	7	131081983	131081983	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP19	4327	broad.mit.edu	37	12	56231265	56231265	+	Intron	SNP	G	T	T	rs140916750	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP26	56547	broad.mit.edu	37	11	5009450	5009450	+	Silent	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90857477	90857477	+	Silent	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10	4343	broad.mit.edu	37	1	113237591	113237591	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRAS	22808	broad.mit.edu	37	3	138111868	138111868	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL1	65008	broad.mit.edu	37	4	78806609	78806609	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL37	51253	broad.mit.edu	37	1	54681773	54681773	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60231794	60231794	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH3	4437	broad.mit.edu	37	5	79952087	79952087	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR1	8776	broad.mit.edu	37	X	149896373	149896373	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11307866	11307866	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8977077	8977078	+	Intron	INS	-	C	C	rs144911804	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8987284	8987284	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9067655	9067655	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9075271	9075271	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9083779	9083779	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9088114	9088114	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9089538	9089538	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1101153	1101153	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCL1	4610	broad.mit.edu	37	1	40362894	40362894	+	3'UTR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEF2	50804	broad.mit.edu	37	15	48444035	48444035	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15818778	15818778	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108174488	108174488	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10435251	10435251	+	Intron	DEL	G	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23863324	23863324	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10302695	10302695	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10322030	10322030	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL12B	103910	broad.mit.edu	37	18	3277517	3277517	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYNN	55892	broad.mit.edu	37	3	169496504	169496504	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52611497	52611498	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2046745	2046745	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175184864	175184864	+	Silent	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAGK	55577	broad.mit.edu	37	2	71300477	71300477	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101997730	101997730	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78444626	78444626	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78516143	78516153	+	Frame_Shift_Del	DEL	AGGCACTCACG	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145267638	145267638	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145311563	145311563	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145368208	145368213	+	Intron	DEL	TCTCTG	-	-	rs72354261		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145761964	145761964	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF15	284565	broad.mit.edu	37	1	148556281	148556281	+	5'Flank	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF22P	285622	broad.mit.edu	37	5	85583588	85583588	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144169709	144169709	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG	64151	broad.mit.edu	37	4	17816939	17816939	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCF2	4688	broad.mit.edu	37	1	183556151	183556151	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133632008	133632008	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	119115731	119115731	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA9	4704	broad.mit.edu	37	12	4796114	4796114	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFAF4	29078	broad.mit.edu	37	6	97345748	97345748	+	5'UTR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK5	341676	broad.mit.edu	37	13	52667105	52667105	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2L2	4780	broad.mit.edu	37	2	178098810	178098810	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIX	4784	broad.mit.edu	37	19	13184748	13184748	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBID	84807	broad.mit.edu	37	19	36387460	36387460	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFS1	9054	broad.mit.edu	37	20	34278154	34278173	+	Intron	DEL	AAGGAGGACAGTACACACTC	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGDN	25983	broad.mit.edu	37	14	23946391	23946391	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	37052410	37052410	+	Intron	DEL	A	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLN	57486	broad.mit.edu	37	5	65088520	65088520	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56490758	56490758	+	Splice_Site	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH3	4854	broad.mit.edu	37	19	15276860	15276861	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32181752	32181752	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34177116	34177117	+	Intron	DNP	GG	AT	AT			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPEPPS	9520	broad.mit.edu	37	17	45662869	45662869	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS2	7827	broad.mit.edu	37	1	179533708	179533708	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR3	4883	broad.mit.edu	37	5	32774829	32774829	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H4	9971	broad.mit.edu	37	12	100897125	100897125	+	5'Flank	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I2	8856	broad.mit.edu	37	3	119511310	119511310	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115389428	115389428	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105168748	105168748	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79746711	79746711	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMCE2	286053	broad.mit.edu	37	8	126213748	126213748	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF3	4908	broad.mit.edu	37	12	5585497	5585497	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131296679	131296679	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88472412	88472412	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP88	4927	broad.mit.edu	37	17	5314073	5314073	+	Missense_Mutation	SNP	G	T	T	rs144076487		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NVL	4931	broad.mit.edu	37	1	224491431	224491431	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16860107	16860107	+	Silent	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101091845	101091845	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH1	30010	broad.mit.edu	37	7	8475641	8475641	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228492933	228492933	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123556172	123556172	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132290256	132290256	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6865593	6865593	+	5'Flank	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J3	441911	broad.mit.edu	37	1	159284283	159284283	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J5	127385	broad.mit.edu	37	1	159505395	159505395	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14I1	401994	broad.mit.edu	37	1	248845559	248845559	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1N1	138883	broad.mit.edu	37	9	125289495	125289495	+	Silent	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B6	26212	broad.mit.edu	37	6	27925319	27925319	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248685282	248685282	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248685554	248685554	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248343905	248343905	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T11	127077	broad.mit.edu	37	1	248789751	248789751	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C11	219429	broad.mit.edu	37	11	55370922	55370922	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C11	219429	broad.mit.edu	37	11	55371655	55371655	+	Silent	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D1	26689	broad.mit.edu	37	17	56233444	56233444	+	Silent	SNP	G	A	A	rs140837404	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S1	256148	broad.mit.edu	37	11	48328563	48328563	+	Silent	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51A7	119687	broad.mit.edu	37	11	4928916	4928916	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51D1	390038	broad.mit.edu	37	11	4661129	4661129	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51F2	119694	broad.mit.edu	37	11	4843115	4843115	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C75	390323	broad.mit.edu	37	12	55759462	55759462	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7D2	162998	broad.mit.edu	37	19	9293603	9293603	+	5'Flank	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B8	26493	broad.mit.edu	37	11	124310147	124310147	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D1	283159	broad.mit.edu	37	11	124179838	124179838	+	Silent	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G4	283189	broad.mit.edu	37	11	56510823	56510823	+	Silent	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9I1	219954	broad.mit.edu	37	11	57886056	57886056	+	Silent	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9I1	219954	broad.mit.edu	37	11	57886223	57886223	+	Missense_Mutation	SNP	C	T	T	rs143742477		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24932098	24932098	+	5'UTR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76750467	76750467	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSTF1	26578	broad.mit.edu	37	9	77755598	77755598	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX5	5026	broad.mit.edu	37	17	3593336	3593336	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY14	9934	broad.mit.edu	37	3	150930960	150930960	+	3'UTR	SNP	T	A	A	rs56155270	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103271368	103271368	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	119144874	119144874	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162715147	162715148	+	Intron	INS	-	AT	AT	rs140315750	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55944844	55944844	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA12	56137	broad.mit.edu	37	5	140256799	140256799	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA6	56142	broad.mit.edu	37	5	140208840	140208840	+	Silent	SNP	G	T	T	rs365581		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHAC1	56135	broad.mit.edu	37	5	140307540	140307540	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165989833	165989833	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20766339	20766340	+	Intron	DNP	CC	AA	AA			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144879555	144879555	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145027288	145027289	+	Intron	INS	-	G	G	rs148289148		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145027809	145027809	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7A	5150	broad.mit.edu	37	8	66631608	66631608	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE8B	8622	broad.mit.edu	37	5	76708954	76708954	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE9A	5152	broad.mit.edu	37	21	44108033	44108033	+	Silent	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55127361	55127361	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41587854	41587854	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41967396	41967396	+	Missense_Mutation	SNP	C	A	A	rs144265671		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5L	51555	broad.mit.edu	37	3	179576977	179576977	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX6	5190	broad.mit.edu	37	6	42934365	42934365	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKM	5213	broad.mit.edu	37	12	48533760	48533760	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM1	5236	broad.mit.edu	37	1	64089164	64089164	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5	5239	broad.mit.edu	37	9	71006455	71006456	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133860991	133860994	+	3'UTR	DEL	TATT	-	-	rs10580863		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHYHD1	254295	broad.mit.edu	37	9	131703587	131703587	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KA	5297	broad.mit.edu	37	22	21087248	21087248	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGK	10026	broad.mit.edu	37	1	77558315	77558315	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106508152	106508152	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2C	79837	broad.mit.edu	37	12	57994800	57994800	+	Silent	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITX2	5308	broad.mit.edu	37	4	111539531	111539532	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110437294	110437294	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110476711	110476711	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51918001	51918001	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G12A	81579	broad.mit.edu	37	4	110639891	110639891	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G12B	84647	broad.mit.edu	37	10	74695503	74695503	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G12B	84647	broad.mit.edu	37	10	74714335	74714335	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28754912	28754912	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8528981	8528984	+	Intron	DEL	TCTT	-	-	rs10541606		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155205894	155205894	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD3	23646	broad.mit.edu	37	19	40884006	40884006	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA9	51054	broad.mit.edu	37	12	45567059	45567059	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG2	64857	broad.mit.edu	37	19	39913447	39913448	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR4	57088	broad.mit.edu	37	3	145917613	145917613	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208315681	208315682	+	Missense_Mutation	DNP	TC	GG	GG			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133244363	133244363	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1A	25885	broad.mit.edu	37	2	86332736	86332736	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2F	5435	broad.mit.edu	37	22	38363747	38363747	+	3'UTR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81851619	81851619	+	Silent	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIA	5478	broad.mit.edu	37	7	44836291	44836291	+	5'UTR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIG	9360	broad.mit.edu	37	2	170471029	170471029	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIG	9360	broad.mit.edu	37	2	170487259	170487259	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37531502	37531502	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94881459	94881459	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11106551	11106551	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM5	11107	broad.mit.edu	37	4	121619506	121619506	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM5	11107	broad.mit.edu	37	4	121814176	121814176	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM8	56978	broad.mit.edu	37	4	81121208	81121208	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47266653	47266653	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57240326	57240326	+	Intron	DEL	C	-	-	rs67829023		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57293417	57293418	+	Intron	INS	-	T	T	rs149853195	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCE	5581	broad.mit.edu	37	2	46100595	46100596	+	Intron	DEL	AA	-	-	rs112999212		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCQ	5588	broad.mit.edu	37	10	6547576	6547577	+	Intron	INS	-	CCTT	CCTT	rs143591503	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRNP	5621	broad.mit.edu	37	20	4680012	4680012	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR1	10887	broad.mit.edu	37	2	68872970	68872970	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF38B	55119	broad.mit.edu	37	1	109242165	109242165	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150319032	150319032	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR14	78994	broad.mit.edu	37	16	30665950	30665950	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRC1	133619	broad.mit.edu	37	5	126887355	126887355	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS54	221191	broad.mit.edu	37	16	58318599	58318599	+	Silent	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79323715	79323715	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG11	5680	broad.mit.edu	37	19	43519394	43519394	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMF1	9491	broad.mit.edu	37	20	1115871	1115872	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFR	5737	broad.mit.edu	37	1	79002132	79002132	+	Silent	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN12	5782	broad.mit.edu	37	7	77256164	77256164	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214705577	214705577	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8500764	8500764	+	Silent	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8565348	8565348	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	7888352	7888352	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7L	83448	broad.mit.edu	37	12	44139747	44139747	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ProSAPiP1	9762	broad.mit.edu	37	20	3145053	3145053	+	3'UTR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11A	8766	broad.mit.edu	37	15	66169874	66169874	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB43	339122	broad.mit.edu	37	3	128814160	128814160	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB5C	5878	broad.mit.edu	37	17	40282250	40282250	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174219850	174219850	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGEF1	27342	broad.mit.edu	37	7	66103432	66103432	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD23B	5887	broad.mit.edu	37	9	110062508	110062508	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36235863	36235863	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARRES3	5920	broad.mit.edu	37	11	63312001	63312001	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80376335	80376335	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP3	25780	broad.mit.edu	37	2	33749054	33749054	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM26	64062	broad.mit.edu	37	13	79896448	79896448	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM46	166863	broad.mit.edu	37	4	155717947	155717947	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBPJL	11317	broad.mit.edu	37	20	43942958	43942958	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBPJ	3516	broad.mit.edu	37	4	26431952	26431952	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCAN2	10231	broad.mit.edu	37	6	46223459	46223459	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCN2	5955	broad.mit.edu	37	15	77240683	77240683	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH12	145226	broad.mit.edu	37	14	68192033	68192033	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REEP2	51308	broad.mit.edu	37	5	137780258	137780258	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79350329	79350329	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79386021	79386021	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103124140	103124140	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETNLB	84666	broad.mit.edu	37	3	108475319	108475319	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC5	5985	broad.mit.edu	37	12	118469086	118469086	+	3'UTR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFPL2	10739	broad.mit.edu	37	22	32590414	32590414	+	Silent	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGP1	9827	broad.mit.edu	37	9	35751037	35751037	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS5	8490	broad.mit.edu	37	1	163138281	163138281	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241083729	241083729	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBG	57127	broad.mit.edu	37	1	156352690	156352690	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHCE	6006	broad.mit.edu	37	1	25712125	25712125	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMKLA	284716	broad.mit.edu	37	1	42880470	42880470	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72970294	72970294	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RING1	6015	broad.mit.edu	37	6	33179845	33179845	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE8	122665	broad.mit.edu	37	14	21526388	21526388	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF139	11236	broad.mit.edu	37	8	125498037	125498037	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF145	153830	broad.mit.edu	37	5	158596136	158596136	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117647397	117647397	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55609137	55609137	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL31	6160	broad.mit.edu	37	2	101619290	101619290	+	Intron	DEL	C	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35867182	35867182	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213436184	213436184	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237819147	237819147	+	Silent	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237870119	237870119	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33633015	33633015	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34040333	34040333	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCARB2	950	broad.mit.edu	37	4	77089567	77089567	+	Silent	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78158623	78158623	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD1	23256	broad.mit.edu	37	14	31152507	31152507	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38913739	38913739	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165947561	165947561	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCOC	60592	broad.mit.edu	37	4	141206715	141206715	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24B	10427	broad.mit.edu	37	4	110427451	110427451	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4A	64218	broad.mit.edu	37	1	156126379	156126380	+	Intron	DNP	GG	TC	TC			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4A	64218	broad.mit.edu	37	1	156144519	156144519	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9052083	9052083	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT8	23176	broad.mit.edu	37	5	132099163	132099163	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95081196	95081196	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESTD1	91404	broad.mit.edu	37	2	179996808	179996808	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7371330	7371330	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP4	23677	broad.mit.edu	37	2	235951006	235951006	+	Missense_Mutation	SNP	G	T	T	rs148242042		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP5L	80851	broad.mit.edu	37	1	249106308	249106308	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3YL1	26751	broad.mit.edu	37	2	246618	246618	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51191454	51191454	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70333298	70333298	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52000271	52000271	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIN3B	23309	broad.mit.edu	37	19	16974633	16974633	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIN3B	23309	broad.mit.edu	37	19	16974672	16974672	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIL	6498	broad.mit.edu	37	3	170110049	170110049	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIV2L	6499	broad.mit.edu	37	6	31927197	31927197	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF6	114836	broad.mit.edu	37	1	160460895	160460895	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48513169	48513169	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A3	64849	broad.mit.edu	37	20	45236117	45236117	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A4	121260	broad.mit.edu	37	12	129278646	129278646	+	3'UTR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A5	283652	broad.mit.edu	37	15	48414360	48414360	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95750584	95750584	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A46	91137	broad.mit.edu	37	5	110083988	110083988	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103048344	103048344	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A8	169026	broad.mit.edu	37	8	118078204	118078204	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A8	169026	broad.mit.edu	37	8	118147586	118147586	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A2	10568	broad.mit.edu	37	4	25678392	25678392	+	3'UTR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A1	206358	broad.mit.edu	37	5	150846881	150846882	+	Intron	DEL	AC	-	-	rs61191955	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A4	55089	broad.mit.edu	37	12	47173911	47173911	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170185069	170185069	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A2	6542	broad.mit.edu	37	8	17412654	17412654	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103095660	103095660	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21051394	21051394	+	Silent	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21229353	21229353	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN5	162394	broad.mit.edu	37	17	33586427	33586427	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98761095	98761095	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCR8	140775	broad.mit.edu	37	17	18226352	18226352	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18887705	18887705	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMURF1	57154	broad.mit.edu	37	7	98634636	98634636	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCAIP	9627	broad.mit.edu	37	5	121748190	121748190	+	Intron	SNP	C	A	A	rs116697113	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127489936	127489936	+	Intron	DEL	T	-	-	rs11302251		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX14	57231	broad.mit.edu	37	6	86259576	86259576	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX2	6643	broad.mit.edu	37	5	122161790	122161791	+	Missense_Mutation	DNP	GC	TG	TG			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108357110	108357110	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS2	57537	broad.mit.edu	37	4	7665431	7665431	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX2OT	347689	broad.mit.edu	37	3	181401468	181401468	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG8	26206	broad.mit.edu	37	9	35811203	35811203	+	Missense_Mutation	SNP	G	C	C	rs150971266		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55648409	55648409	+	5'Flank	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158583761	158583761	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158607816	158607816	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158651402	158651402	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41078201	41078201	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65216421	65216421	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65292045	65292045	+	5'Flank	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A2	6716	broad.mit.edu	37	2	31756637	31756637	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9050015	9050015	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL6	10402	broad.mit.edu	37	3	98487365	98487365	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104109609	104109609	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD13	90627	broad.mit.edu	37	13	33687211	33687211	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23825087	23825087	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23827750	23827750	+	Splice_Site	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX16	8675	broad.mit.edu	37	20	57234760	57234760	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP6	29091	broad.mit.edu	37	14	25326213	25326213	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46291890	46291890	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149879873	149879873	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113231319	113231319	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33535420	33535420	+	Silent	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT9	143425	broad.mit.edu	37	11	7487998	7487998	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL5	94122	broad.mit.edu	37	X	37913577	37913577	+	Silent	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR1	134864	broad.mit.edu	37	6	132967038	132967038	+	Silent	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR6	319100	broad.mit.edu	37	6	132891805	132891805	+	Silent	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF9	6880	broad.mit.edu	37	5	68661018	68661018	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANK	10010	broad.mit.edu	37	2	162043605	162043605	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARP	445347	broad.mit.edu	37	7	38313147	38313147	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARP	445347	broad.mit.edu	37	7	38356520	38356520	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R41	259287	broad.mit.edu	37	7	143175707	143175707	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TASP1	55617	broad.mit.edu	37	20	13550315	13550315	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D21	161514	broad.mit.edu	37	15	74174180	74174180	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL1XR1	79718	broad.mit.edu	37	3	176744032	176744032	+	Intron	DEL	A	-	-	rs112275760		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL1XR1	79718	broad.mit.edu	37	3	176755885	176755886	+	Splice_Site	DNP	CC	AA	AA			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL1XR1	79718	broad.mit.edu	37	3	176767882	176767882	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTEX1D1	200132	broad.mit.edu	37	1	67236238	67236238	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTN1	79600	broad.mit.edu	37	12	111078943	111078943	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD1	56165	broad.mit.edu	37	10	115973390	115973390	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD9	122402	broad.mit.edu	37	14	104516028	104516028	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	121028887	121028887	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11676589	11676614	+	Splice_Site	DEL	CTACAAAAATTATAACACAAAAATTA	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138169160	138169160	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMP3	7078	broad.mit.edu	37	22	33255401	33255402	+	3'UTR	DNP	CC	AA	AA			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164393215	164393215	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE4	7091	broad.mit.edu	37	9	82219962	82219962	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63044765	63044765	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR9	54106	broad.mit.edu	37	3	52257640	52257640	+	Missense_Mutation	SNP	C	T	T	rs147300053		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC4	147798	broad.mit.edu	37	19	54675653	54675653	+	Silent	SNP	G	A	A	rs139603991	byFrequency	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM110	375346	broad.mit.edu	37	3	52896105	52896105	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129559133	129559133	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129704048	129704048	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129747003	129747003	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83290437	83290437	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC3	160418	broad.mit.edu	37	12	88542108	88542108	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	171124468	171124468	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175066708	175066708	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218750093	218750093	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47385804	47385804	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOB2	10766	broad.mit.edu	37	22	41832725	41832725	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L2	146691	broad.mit.edu	37	17	17752188	17752188	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP1	7150	broad.mit.edu	37	20	39743991	39743991	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53BP1	7158	broad.mit.edu	37	15	43720708	43720708	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578257	7578258	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144245791	144245791	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10970143	10970143	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRANK1	9881	broad.mit.edu	37	3	36897786	36897786	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141362713	141362713	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM25	7706	broad.mit.edu	37	17	54973413	54973413	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM2	23321	broad.mit.edu	37	4	154237007	154237007	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM9	114088	broad.mit.edu	37	14	51446144	51446144	+	Silent	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189026491	189026491	+	5'Flank	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122828338	122828338	+	Intron	SNP	T	C	C	rs140204067	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111155676	111155676	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45810823	45810823	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49686403	49686403	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142572639	142572639	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98547352	98547352	+	Nonsense_Mutation	SNP	C	T	T	rs149035665		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98564703	98564703	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN9	10867	broad.mit.edu	37	12	3377370	3377370	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN9	10867	broad.mit.edu	37	12	3377391	3377391	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7A	57217	broad.mit.edu	37	2	47287969	47287970	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL11	158135	broad.mit.edu	37	9	124657278	124657278	+	Intron	DEL	A	-	-	rs59825468		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL1	25809	broad.mit.edu	37	22	43447822	43447822	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179391671	179391671	+	3'UTR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179393311	179393311	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179483162	179483162	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179540684	179540684	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179592757	179592757	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179592771	179592771	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179604758	179604758	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179616533	179616533	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179629076	179629076	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUSC3	7991	broad.mit.edu	37	8	15480671	15480671	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXN	7295	broad.mit.edu	37	9	113007154	113007154	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3A	7337	broad.mit.edu	37	15	25616902	25616902	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A10	54575	broad.mit.edu	37	2	234545674	234545674	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF2	115426	broad.mit.edu	37	9	6433943	6433943	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF3A	65110	broad.mit.edu	37	13	115057048	115057048	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17552612	17552612	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216062388	216062388	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179470018	179470018	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57640187	57640187	+	Silent	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP35	57558	broad.mit.edu	37	11	77919736	77919736	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP4	7375	broad.mit.edu	37	3	49337975	49337975	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41075524	41075524	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107445207	107445207	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	11435910	11435910	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	119573319	119573319	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	121380946	121380946	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132542459	132542459	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15041685	15041685	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15041843	15041843	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36243145	36243145	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37627806	37627806	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46213521	46213521	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	55454346	55454346	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	59101330	59101331	+	IGR	INS	-	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65662662	65662662	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	99069632	99069632	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18283548	18283548	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	42540087	42540087	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48486034	48486034	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49391724	49391724	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49895348	49895348	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49942805	49942805	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55070087	55070087	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55350228	55350228	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79698557	79698557	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	85906517	85906517	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	95240568	95240568	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	105774127	105774127	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	10659018	10659018	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	113938462	113938462	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128713119	128713119	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	129498358	129498358	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	17144336	17144336	+	IGR	DEL	C	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30607839	30607839	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30633186	30633186	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34460607	34460607	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34559746	34559746	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	45366768	45366768	+	IGR	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8789610	8789610	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88739008	88739009	+	IGR	INS	-	TTT	TTT	rs150969558		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	97295338	97295338	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	97713317	97713317	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	101381598	101381598	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105466984	105466984	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105821500	105821500	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	110214741	110214741	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	21523428	21523428	+	IGR	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	23030550	23030550	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	48005170	48005170	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53983732	53983732	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	58156500	58156500	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	58352939	58352939	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	63783412	63783412	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	64385331	64385331	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	74033618	74033618	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79839620	79839620	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	89630811	89630811	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	98404459	98404462	+	IGR	DEL	TCAT	-	-	rs113118973		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26481207	26481207	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	35899582	35899582	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	42635882	42635882	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43961662	43961662	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44885144	44885144	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45330784	45330784	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	46124064	46124064	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49107994	49107994	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	53848890	53848890	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57507792	57507792	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	66868937	66868937	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20087610	20087610	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20192765	20192765	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20433853	20433853	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	24283440	24283440	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	28857303	28857303	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30813630	30813630	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	32277383	32277383	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	70019291	70019291	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88924433	88924433	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	98548580	98548580	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32046389	32046389	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32095657	32095657	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32374091	32374091	+	IGR	SNP	C	G	G	rs148439303	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32392830	32392830	+	IGR	SNP	T	C	C	rs146777778	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32848507	32848507	+	IGR	SNP	T	C	C	rs144274120	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32849468	32849468	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32851594	32851594	+	IGR	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32915007	32915007	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33538106	33538106	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33852466	33852466	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33974825	33974825	+	IGR	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34875448	34875448	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46660670	46660670	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51576757	51576758	+	IGR	INS	-	T	T	rs146242755	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61664845	61664845	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73348550	73348550	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79774	79774	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	9460946	9460946	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20516974	20516974	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25299993	25299993	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	2965893	2965893	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	32890698	32890698	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	49616871	49616871	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	50787733	50787733	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51380583	51380583	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	53638715	53638715	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	71687186	71687186	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14632086	14632086	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14992687	14992687	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15165500	15165500	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15165568	15165568	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15171087	15171087	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15199260	15199260	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	23059898	23059899	+	IGR	DEL	AT	-	-	rs140584827		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	45243565	45243565	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	6462715	6462715	+	IGR	DEL	C	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	70798508	70798508	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	70967275	70967275	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	94277	94277	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15722960	15722961	+	IGR	DEL	AT	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15932946	15932946	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20047881	20047881	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20988942	20988942	+	IGR	SNP	G	T	T	rs138188166	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23032055	23032055	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23185916	23185916	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32479810	32479810	+	IGR	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	34483299	34483299	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35273052	35273052	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53507469	53507469	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54534726	54534726	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102068931	102068931	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104695944	104695944	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106623511	106623511	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	147313081	147313081	+	IGR	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149130384	149130384	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	160569684	160569684	+	IGR	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166244889	166244889	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	172928970	172928970	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175195413	175195413	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	195386177	195386177	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	213693699	213693699	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221195679	221195679	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222199411	222199411	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242222745	242222745	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248637684	248637684	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30373607	30373607	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30787906	30787906	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	38733170	38733170	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	61381358	61381358	+	IGR	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	62120372	62120372	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79215412	79215413	+	IGR	DNP	CC	AA	AA			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	88230690	88230690	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12512418	12512418	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12763334	12763334	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	16047793	16047793	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	21766965	21766965	+	IGR	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	41859504	41859504	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	4421433	4421433	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	49394430	49394430	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56063398	56063398	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56549294	56549294	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	5909676	5909676	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	9847273	9847273	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10617070	10617070	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11123924	11123924	+	IGR	SNP	C	T	T	rs79252002		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	33440085	33440085	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9590408	9590408	+	IGR	SNP	G	C	C	rs4022800		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16364834	16364834	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16365496	16365496	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16365521	16365521	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16651969	16651969	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	48735009	48735009	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	124316293	124316293	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181687372	181687372	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	188899929	188899929	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	208329226	208329226	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210044209	210044209	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210045218	210045218	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21128345	21128345	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21625964	21625964	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21805012	21805012	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	22388488	22388488	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	235489112	235489112	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	240833492	240833492	+	IGR	SNP	T	C	C	rs112158966	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	329184	329184	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	36120619	36120619	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49510235	49510235	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52271424	52271424	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	526908	526908	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58479745	58479745	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	65187721	65187721	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72296504	72296504	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	7421790	7421790	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	7526432	7526432	+	IGR	SNP	G	T	T	rs5829104		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	75704231	75704231	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78019950	78019950	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	79263980	79263980	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91795647	91795647	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800609	91800609	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91972891	91972891	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92118215	92118215	+	IGR	SNP	G	C	C	rs142699470	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117052204	117052204	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	122380739	122380739	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	15183511	15183511	+	IGR	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	154669315	154669315	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155831594	155831594	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161878123	161878123	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163743705	163743705	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	178211692	178211692	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	18797086	18797086	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	189665144	189665144	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	19126387	19126387	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192873942	192873942	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	40740634	40740634	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82711526	82711526	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88997296	88997296	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	89108801	89108801	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	93587265	93587272	+	IGR	DEL	CTTCCTTT	-	-	rs10534066		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96068412	96068412	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96386188	96386188	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96387538	96387538	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	100661854	100661854	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	123531524	123531524	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189310356	189310356	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190651609	190651609	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190680653	190680653	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	191027776	191027776	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	22964675	22964675	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43588547	43588547	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45943269	45943269	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	47020028	47020028	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49266609	49266609	+	IGR	SNP	A	T	T	rs78724932		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	66960154	66960154	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69417727	69417727	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69785994	69785994	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69790391	69790391	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	101413662	101413662	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144608711	144608711	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	158066356	158066356	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2593489	2593489	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	38080334	38080334	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39719268	39719268	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	44305094	44305094	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5978257	5978257	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	63225089	63225089	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	68024507	68024507	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	72558418	72558418	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7299932	7299932	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97340302	97340302	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99727830	99727830	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	110370401	110370401	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112683619	112683619	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	121975132	121975132	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	130122543	130122543	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	157635459	157635459	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	164857985	164857985	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	166478116	166478116	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29769152	29769152	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50227703	50227703	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	52739063	52739063	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57802788	57802788	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57970549	57970549	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58579726	58579726	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58726927	58726927	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63921519	63921519	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63937749	63937749	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66546843	66546843	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	70119332	70119332	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	94872113	94872113	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	95269500	95269500	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	106104905	106104905	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	114681064	114681064	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	115434208	115434208	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	119623743	119623743	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131560283	131560283	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143748585	143748585	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143839909	143839909	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144132224	144132224	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144707557	144707557	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	156288801	156288801	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25536626	25536626	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57698805	57698817	+	IGR	DEL	GACTTATACCCAG	-	-	rs113395817		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61827328	61827328	+	IGR	SNP	A	C	C	rs7458053	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61828269	61828269	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63030885	63030885	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63894434	63894434	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	93935335	93935335	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9655259	9655259	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111568401	111568401	+	IGR	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	127002841	127002841	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	129864246	129864247	+	IGR	INS	-	T	T	rs113427699		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	131614754	131614754	+	IGR	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132058373	132058374	+	IGR	INS	-	AC	AC	rs148500401	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	133712866	133712866	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	135247131	135247132	+	IGR	INS	-	T	T	rs149118758	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	139550570	139550579	+	IGR	DEL	GGAAGGGAAG	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	139583353	139583353	+	IGR	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	142934749	142934750	+	IGR	DEL	AC	-	-	rs146127423		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	19083538	19083538	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	24795712	24795712	+	IGR	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	26968436	26968436	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34731690	34731690	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47344984	47344984	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	49297649	49297649	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58127266	58127266	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83290905	83290905	+	IGR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	84113935	84113935	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	85861723	85861723	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118604643	118604643	+	IGR	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118884282	118884282	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120281098	120281098	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	121783699	121783699	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31104039	31104039	+	IGR	DEL	C	-	-	rs66460020		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66484120	66484120	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68398095	68398095	+	IGR	DEL	C	-	-	rs74487823		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68401694	68401694	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68404971	68404971	+	IGR	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68424615	68424615	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69837501	69837501	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7606308	7606308	+	IGR	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78017017	78017017	+	IGR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90432490	90432490	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	94281981	94281981	+	IGR	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	121673227	121673227	+	IGR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	140232748	140232748	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48136312	48136312	+	IGR	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	10019489	10019489	+	IGR	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14551937	14551937	+	IGR	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59005579	59005579	+	IGR	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9368329	9368330	+	IGR	INS	-	TG	TG			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9934760	9934760	+	IGR	SNP	G	T	T	rs78699820		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108152588	108152588	+	Splice_Site	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108309024	108309024	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82816104	82816104	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEPH1	79674	broad.mit.edu	37	3	157099227	157099227	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIM	7431	broad.mit.edu	37	10	17277401	17277401	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	37002020	37002020	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133052738	133052738	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS35	55737	broad.mit.edu	37	16	46696441	46696441	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38767992	38767992	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98858655	98858655	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA5B1	127731	broad.mit.edu	37	1	20617381	20617381	+	5'Flank	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP2NL	164684	broad.mit.edu	37	22	42416011	42416011	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70875799	70875799	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70965589	70965589	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85771070	85771070	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177071009	177071009	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR44	54521	broad.mit.edu	37	X	117540866	117540866	+	Silent	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR63	126820	broad.mit.edu	37	1	85550363	85550363	+	Silent	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241904891	241904891	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR66	144406	broad.mit.edu	37	12	122399998	122399998	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR78	79819	broad.mit.edu	37	1	67288077	67288077	+	Silent	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT5A	7474	broad.mit.edu	37	3	55504070	55504070	+	3'UTR	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRAP53	55135	broad.mit.edu	37	17	7606167	7606167	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168099706	168099706	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168100623	168100623	+	Silent	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56216833	56216833	+	Intron	SNP	G	A	A	rs144826008	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56305984	56305984	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKRX	402415	broad.mit.edu	37	X	100169469	100169469	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRRA1	143570	broad.mit.edu	37	11	74651834	74651834	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YPEL2	388403	broad.mit.edu	37	17	57465744	57465744	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135744396	135744396	+	Silent	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDC1	91746	broad.mit.edu	37	4	69198022	69198022	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZADH2	284273	broad.mit.edu	37	18	72913517	72913517	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBP1	81030	broad.mit.edu	37	20	56186875	56186875	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB16	7704	broad.mit.edu	37	11	114004008	114004008	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC9	84240	broad.mit.edu	37	5	80604472	80604472	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC14	79683	broad.mit.edu	37	6	157915295	157915295	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145182142	145182142	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND3	60685	broad.mit.edu	37	6	38087430	38087430	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP14	57677	broad.mit.edu	37	19	36831961	36831961	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP82	284406	broad.mit.edu	37	19	36884638	36884638	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147128838	147128839	+	Frame_Shift_Del	DEL	CG	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22157415	22157415	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF233	353355	broad.mit.edu	37	19	44778388	44778388	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF233	353355	broad.mit.edu	37	19	44778566	44778566	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF238	10472	broad.mit.edu	37	1	244218033	244218033	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF248	57209	broad.mit.edu	37	10	38120477	38120477	+	3'UTR	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF248	57209	broad.mit.edu	37	10	38121619	38121619	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22255680	22255680	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF354B	117608	broad.mit.edu	37	5	178310767	178310767	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64429835	64429835	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72628210	72628210	+	Intron	SNP	A	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72628213	72628213	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF462	58499	broad.mit.edu	37	9	109690045	109690045	+	Silent	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF462	58499	broad.mit.edu	37	9	109704723	109704723	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF490	57474	broad.mit.edu	37	19	12691673	12691673	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF507	22847	broad.mit.edu	37	19	32873969	32873969	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF571	51276	broad.mit.edu	37	19	38055973	38055973	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF600	162966	broad.mit.edu	37	19	53280665	53280665	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF613	79898	broad.mit.edu	37	19	52448126	52448126	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71655661	71655661	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF653	115950	broad.mit.edu	37	19	11608932	11608932	+	Intron	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF667	63934	broad.mit.edu	37	19	56953955	56953955	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF69	7620	broad.mit.edu	37	19	12016301	12016301	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF727	442319	broad.mit.edu	37	7	63538757	63538757	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF773	374928	broad.mit.edu	37	19	58016571	58016571	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF808	388558	broad.mit.edu	37	19	53050824	53050824	+	Silent	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF827	152485	broad.mit.edu	37	4	146696992	146696992	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF92	168374	broad.mit.edu	37	7	64853653	64853653	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22939299	22939299	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM4	65249	broad.mit.edu	37	19	13941649	13941649	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM6	57688	broad.mit.edu	37	5	60710178	60710178	+	Intron	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3945542	3945543	+	Intron	INS	-	AC	AC	rs139361429	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3959437	3959438	+	Intron	INS	-	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	3432969	3432969	+	RNA	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74565550	74565550	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22753294	22753294	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19857016	19857016	+	RNA	SNP	T	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22372780	22372780	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22392792	22392792	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22955464	22955464	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	67916221	67916221	+	5'Flank	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20645953	20645953	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	32676446	32676446	+	5'Flank	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	90838623	90838623	+	5'Flank	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34978922	34978922	+	5'Flank	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34981231	34981231	+	Intron	SNP	G	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	16721698	16721698	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39791234	39791234	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	42030718	42030718	+	Intron	DEL	T	-	-	rs34951283		TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29215259	29215259	+	Intron	SNP	A	G	G	rs150228902	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142649288	142649288	+	Intron	SNP	C	A	A	rs145564946	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143454192	143454192	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	173429147	173429148	+	Intron	INS	-	AAGC	AAGC	rs144970854	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	237167633	237167633	+	RNA	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	5728481	5728481	+	5'Flank	SNP	T	A	A	rs145082092	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9769008	9769008	+	RNA	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16374073	16374073	+	Intron	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89246828	89246828	+	RNA	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89428064	89428064	+	Intron	SNP	C	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89470213	89470213	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90060957	90060957	+	Intron	SNP	G	T	T	rs141599034	by1000genomes	TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14120566	14120566	+	Intron	SNP	T	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69342941	69342941	+	Intron	SNP	C	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	88814464	88814464	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34192214	34192214	+	5'Flank	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142111804	142111804	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143456635	143456635	+	Intron	SNP	A	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	29781753	29781753	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	1060486	1060486	+	Intron	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	123134987	123134987	+	Intron	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	40582465	40582465	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66457546	66457546	+	5'Flank	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66459908	66459908	+	5'Flank	SNP	C	G	G			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66465378	66465378	+	Intron	SNP	T	C	C			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90744629	90744629	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	6876	6876	+	5'UTR	SNP	G	A	A			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
