Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2M	2	broad.mit.edu	37	12	9248426	9248426	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AADACL2	344752	broad.mit.edu	37	3	151474780	151474780	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARSD1	80755	broad.mit.edu	37	17	41107293	41107293	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASS	10157	broad.mit.edu	37	7	121773615	121773615	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67178223	67178223	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48398820	48398820	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48416091	48416091	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48431671	48431671	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48520641	48520641	+	Silent	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48666892	48666892	+	Intron	DEL	A	-	-	rs75383723		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94505765	94505765	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67255963	67255963	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67266920	67266920	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87174081	87174081	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101572668	101572669	+	Intron	DNP	GG	TC	TC			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183689445	183689445	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF3	55324	broad.mit.edu	37	3	183905813	183905813	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100489475	100489475	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100557248	100557248	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100567509	100567509	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100657875	100657875	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABP1	26	broad.mit.edu	37	7	150558060	150558060	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35598837	35598837	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31914064	31914064	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32365851	32365851	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL3	2181	broad.mit.edu	37	2	223797991	223797991	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM1	116285	broad.mit.edu	37	16	20648101	20648101	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20476975	20476975	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTC1	70	broad.mit.edu	37	15	35084575	35084575	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM29	11086	broad.mit.edu	37	4	175898174	175898174	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39618754	39618754	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106667767	106667767	+	RNA	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106805160	106805160	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106805875	106805875	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106848626	106848626	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106916471	106916471	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107048645	107048645	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72520525	72520525	+	Silent	SNP	G	T	T	rs61736608	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77355081	77355081	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128984536	128984536	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43944788	43944788	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1569229	1569229	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK1	57143	broad.mit.edu	37	14	78391961	78391961	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7724739	7724739	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7789844	7789844	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31126479	31126479	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADC	113451	broad.mit.edu	37	1	33559988	33559988	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADHFE1	137872	broad.mit.edu	37	8	67366010	67366010	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	87968000	87968000	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147925103	147925103	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100185202	100185202	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236708124	236708124	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86697909	86697909	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49208588	49208588	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109674008	109674008	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L2	85007	broad.mit.edu	37	5	177641884	177641884	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT	189	broad.mit.edu	37	2	241814461	241814461	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247061489	247061489	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62295107	62295107	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIFM3	150209	broad.mit.edu	37	22	21331142	21331142	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM2	9447	broad.mit.edu	37	1	159043057	159043057	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86077002	86077002	+	Silent	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNAD1	254268	broad.mit.edu	37	1	109395075	109395075	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A1	216	broad.mit.edu	37	9	75540601	75540601	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3B2	222	broad.mit.edu	37	11	67433923	67433923	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH9A1	223	broad.mit.edu	37	1	165667583	165667583	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29754879	29754879	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73677104	73677104	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPI	248	broad.mit.edu	37	2	233322032	233322032	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALX1	8092	broad.mit.edu	37	12	85695047	85695047	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOTL1	154810	broad.mit.edu	37	11	94597859	94597859	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOT	154796	broad.mit.edu	37	X	112025684	112025684	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115220063	115220063	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT4	51378	broad.mit.edu	37	20	858757	858757	+	Intron	SNP	C	A	A	rs73602182		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114199126	114199126	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114294557	114294557	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61833198	61833198	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKLE2	23141	broad.mit.edu	37	12	133313587	133313587	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	73964157	73964157	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	74039883	74039883	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD22	118932	broad.mit.edu	37	10	90582699	90582699	+	Nonstop_Mutation	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD27	84079	broad.mit.edu	37	19	33110110	33110110	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD33	341405	broad.mit.edu	37	12	52284917	52284917	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	100169247	100169247	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99548216	99548216	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5886664	5886664	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101436059	101436059	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO7	50636	broad.mit.edu	37	2	242130440	242130440	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32C	23520	broad.mit.edu	37	4	165118764	165118764	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201468861	201468861	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26785302	26785302	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26800880	26800880	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB48R	55911	broad.mit.edu	37	16	28507877	28507877	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21229930	21229930	+	Silent	SNP	G	A	A	rs138010392	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21232297	21232297	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21232405	21232405	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21239532	21239532	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21256304	21256304	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33402119	33402119	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARCN1	372	broad.mit.edu	37	11	118454055	118454055	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP20	57569	broad.mit.edu	37	11	110451559	110451559	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP30	257106	broad.mit.edu	37	1	161017984	161017985	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF37	389337	broad.mit.edu	37	5	148989257	148989257	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157527833	157527833	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5B	84159	broad.mit.edu	37	10	63661442	63661442	+	5'Flank	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23292132	23292132	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23297703	23297703	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC4	55130	broad.mit.edu	37	10	28284140	28284140	+	Intron	SNP	C	A	A	rs111675655	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC8	25852	broad.mit.edu	37	3	137953878	137953878	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35725261	35725261	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35780931	35780931	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC4	91947	broad.mit.edu	37	15	98509343	98509343	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3030330	3030330	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131136347	131136347	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB7	140460	broad.mit.edu	37	15	101152371	101152371	+	5'UTR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155452241	155452241	+	Splice_Site	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASRGL1	80150	broad.mit.edu	37	11	62123879	62123879	+	Silent	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119976722	119976722	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL1	171023	broad.mit.edu	37	20	31024005	31024005	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	25972653	25972653	+	Missense_Mutation	SNP	C	G	G	rs146506022	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATCAY	85300	broad.mit.edu	37	19	3905691	3905691	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47582619	47582619	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113532725	113532725	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25273153	25273153	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A3	79572	broad.mit.edu	37	3	194162107	194162107	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4B	496	broad.mit.edu	37	13	114309288	114309288	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26127930	26127930	+	Splice_Site	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117061587	117061587	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRN	8455	broad.mit.edu	37	20	3542927	3542927	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70254730	70254730	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT1	2583	broad.mit.edu	37	12	58020522	58020523	+	3'UTR	DNP	GG	TT	TT			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT4	8702	broad.mit.edu	37	3	118937520	118937520	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11028281	11028281	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11066594	11066594	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69665788	69665788	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARD1	580	broad.mit.edu	37	2	215595145	215595145	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARD1	580	broad.mit.edu	37	2	215610419	215610419	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BASE	317716	broad.mit.edu	37	20	31786031	31786031	+	RNA	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS1	8537	broad.mit.edu	37	20	52612285	52612285	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS2	10286	broad.mit.edu	37	1	115110861	115110861	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAT2	587	broad.mit.edu	37	19	49300495	49300495	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2	596	broad.mit.edu	37	18	60866224	60866224	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2	596	broad.mit.edu	37	18	60985504	60985504	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN1	274	broad.mit.edu	37	2	127826587	127826587	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP10	27302	broad.mit.edu	37	2	69092908	69092908	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34085926	34085926	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	96052579	96052579	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43297682	43297682	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43319113	43319113	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC1	646	broad.mit.edu	37	15	83937069	83937069	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD2	6046	broad.mit.edu	37	6	32940749	32940749	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK1	84446	broad.mit.edu	37	19	55814611	55814611	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf120	399814	broad.mit.edu	37	10	124457686	124457686	+	Missense_Mutation	SNP	G	T	T	rs144052210	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf26	54838	broad.mit.edu	37	10	104557800	104557800	+	Silent	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf90	118611	broad.mit.edu	37	10	128148134	128148134	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf99	387695	broad.mit.edu	37	10	85933700	85933700	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf63	79864	broad.mit.edu	37	11	122805773	122805773	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40076657	40076657	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf50	160419	broad.mit.edu	37	12	88391781	88391781	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf50	160419	broad.mit.edu	37	12	88420921	88420921	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf74	338809	broad.mit.edu	37	12	93100912	93100912	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf39	317761	broad.mit.edu	37	14	60903701	60903701	+	Silent	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95921873	95921873	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf29	79768	broad.mit.edu	37	15	34439591	34439591	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921530	24921530	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf43	145645	broad.mit.edu	37	15	45266120	45266120	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100332270	100332270	+	RNA	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34647928	34647928	+	Silent	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf59	388135	broad.mit.edu	37	15	74032479	74032479	+	Missense_Mutation	SNP	G	T	T	rs150411210	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30847129	30847129	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf59	199675	broad.mit.edu	37	19	7743898	7743898	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170967493	170967493	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf150	148823	broad.mit.edu	37	1	247719882	247719882	+	Intron	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12819079	12819079	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf161	126868	broad.mit.edu	37	1	116666737	116666737	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75102078	75102078	+	Silent	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55148346	55148346	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf25	81627	broad.mit.edu	37	1	185089281	185089281	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31885544	31885544	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf117	140710	broad.mit.edu	37	20	35422925	35422925	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf141	128653	broad.mit.edu	37	20	2795885	2795885	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	46096249	46096249	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf29	55571	broad.mit.edu	37	2	101879006	101879006	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26671557	26671557	+	Splice_Site	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf71	388939	broad.mit.edu	37	2	29295619	29295619	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf86	51057	broad.mit.edu	37	2	63379981	63379981	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf17	84103	broad.mit.edu	37	4	100451129	100451129	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5	727	broad.mit.edu	37	9	123776408	123776408	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf43	643155	broad.mit.edu	37	5	60455740	60455740	+	3'UTR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715012	165715012	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf125	84300	broad.mit.edu	37	6	33676187	33676188	+	Intron	INS	-	TT	TT	rs140756479	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47846611	47846611	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121481242	121481242	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf191	253582	broad.mit.edu	37	6	130182435	130182435	+	5'Flank	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf35	729515	broad.mit.edu	37	6	157731900	157731900	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40958161	40958161	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40193433	40193433	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf16	10842	broad.mit.edu	37	7	31746730	31746730	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf42	55069	broad.mit.edu	37	7	66407053	66407053	+	Intron	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf60	154743	broad.mit.edu	37	7	112472727	112472727	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57373737	57373737	+	Missense_Mutation	SNP	G	T	T	rs143908758	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf37	157657	broad.mit.edu	37	8	96271983	96271983	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf80	58493	broad.mit.edu	37	9	115456525	115456525	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49744787	49744787	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49824823	49824823	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA3	761	broad.mit.edu	37	8	86357417	86357417	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65137394	65137394	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140954102	140954102	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181480416	181480416	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181690872	181690872	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81601042	81601042	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81620548	81620548	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86063859	86063859	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134618538	134618538	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7797434	7797434	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPG	822	broad.mit.edu	37	2	85628502	85628502	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPS2	84698	broad.mit.edu	37	12	75692736	75692736	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPSL	133690	broad.mit.edu	37	5	35904652	35904652	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2978336	2978336	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2983857	2983857	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASK	8573	broad.mit.edu	37	X	41495961	41495961	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP5	838	broad.mit.edu	37	11	104869611	104869611	+	Splice_Site	SNP	C	T	T	rs141481245	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER1	117144	broad.mit.edu	37	11	65789107	65789107	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219883952	219883952	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31682218	31682218	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC149	91050	broad.mit.edu	37	4	24845699	24845699	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC40	55036	broad.mit.edu	37	17	78063608	78063608	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC50	152137	broad.mit.edu	37	3	191098603	191098603	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119960637	119960637	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119960833	119960833	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111317818	111317818	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC67	159989	broad.mit.edu	37	11	93127784	93127784	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC81	60494	broad.mit.edu	37	11	86111671	86111671	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR2	729230	broad.mit.edu	37	3	46401148	46401148	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCRL1	51554	broad.mit.edu	37	3	132320151	132320151	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7556286	7556286	+	Missense_Mutation	SNP	C	T	T	rs145190922		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158300792	158300792	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1C	911	broad.mit.edu	37	1	158262720	158262720	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158324884	158324884	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD209	30835	broad.mit.edu	37	19	7807761	7807761	+	3'UTR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD2	914	broad.mit.edu	37	1	117311375	117311375	+	Silent	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD44	960	broad.mit.edu	37	11	35241796	35241796	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5	921	broad.mit.edu	37	11	60889387	60889387	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPB	9578	broad.mit.edu	37	14	103405935	103405935	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64986586	64986589	+	Intron	DEL	CACT	-	-	rs138499402		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65015829	65015829	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21802586	21802586	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21817109	21817109	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22078649	22078649	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19473591	19473591	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19591206	19591206	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19839135	19839135	+	Translation_Start_Site	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH19	28513	broad.mit.edu	37	18	64235932	64235932	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61761177	61761177	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2A	1029	broad.mit.edu	37	9	21971000	21971000	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDON	50937	broad.mit.edu	37	11	125850910	125850910	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2A	63036	broad.mit.edu	37	1	15783363	15783363	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPW	387103	broad.mit.edu	37	6	126667464	126667464	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP350	9857	broad.mit.edu	37	1	179989052	179989052	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31915913	31915913	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGNL1	84952	broad.mit.edu	37	15	57731136	57731136	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40065872	40065872	+	Intron	DEL	T	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHMP2B	25978	broad.mit.edu	37	3	87303014	87303014	+	3'UTR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHMP4C	92421	broad.mit.edu	37	8	82667719	82667720	+	Splice_Site	DNP	GG	TT	TT			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136700125	136700125	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA6	8973	broad.mit.edu	37	8	42611872	42611872	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB4	130106	broad.mit.edu	37	2	26806833	26806833	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP2	148113	broad.mit.edu	37	19	19653355	19653355	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87029453	87029453	+	Splice_Site	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLC	1178	broad.mit.edu	37	19	40225218	40225218	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN25	644672	broad.mit.edu	37	11	113651172	113651172	+	Missense_Mutation	SNP	C	T	T	rs35111413		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC5A	23601	broad.mit.edu	37	7	141645882	141645882	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC9A	283420	broad.mit.edu	37	12	10198304	10198304	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC6	54102	broad.mit.edu	37	21	36080997	36080998	+	Splice_Site	DNP	GG	TT	TT			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN6	54982	broad.mit.edu	37	15	68547061	68547061	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPX	10845	broad.mit.edu	37	15	65450169	65450169	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMIP	80790	broad.mit.edu	37	16	81735233	81735233	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	98999890	98999890	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87644857	87644857	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41316172	41316172	+	Silent	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41414184	41414184	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74334799	74334799	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	124783392	124783392	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125530305	125530305	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125530723	125530723	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51097085	51097085	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51203955	51203955	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBRA1	25920	broad.mit.edu	37	9	140166547	140166547	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103345238	103345238	+	Splice_Site	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103467508	103467508	+	Silent	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75855983	75855983	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101788230	101788230	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70856741	70856741	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70875770	70875770	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70916936	70916936	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	56035800	56035800	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139636168	139636168	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139808869	139808870	+	Intron	DNP	TG	CT	CT			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137693824	137693824	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189903892	189903892	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130311915	130311915	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70964941	70964941	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	71004378	71004378	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS8	10920	broad.mit.edu	37	2	238005469	238005469	+	Silent	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO2B	10391	broad.mit.edu	37	15	69018088	69018088	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA4	51200	broad.mit.edu	37	7	129950929	129950929	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB1	64506	broad.mit.edu	37	15	83218104	83218104	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB1	64506	broad.mit.edu	37	15	83221258	83221258	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB1	64506	broad.mit.edu	37	15	83239916	83239916	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPLX2	10814	broad.mit.edu	37	5	175305870	175305870	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPM	1368	broad.mit.edu	37	12	69263141	69263141	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN1	1369	broad.mit.edu	37	10	101808538	101808538	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131388535	131388535	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211421527	211421527	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211460275	211460275	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197411437	197411437	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB3	1417	broad.mit.edu	37	22	25599992	25599992	+	Intron	SNP	A	T	T	rs16979730	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2910157	2910157	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3000201	3000201	+	Intron	DEL	G	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3265390	3265390	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4368305	4368305	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4368309	4368309	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34401648	34401648	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34404288	34404288	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113812550	113812550	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113933900	113933900	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPP1	79848	broad.mit.edu	37	8	68030981	68030981	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST4	1472	broad.mit.edu	37	20	23667549	23667549	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTL1	128817	broad.mit.edu	37	20	23420907	23420907	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80389760	80389760	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11833519	11833519	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2NL	55917	broad.mit.edu	37	1	112998615	112998615	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43173730	43173730	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADRP3	440224	broad.mit.edu	37	18	14478176	14478176	+	RNA	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR1	3577	broad.mit.edu	37	2	219028726	219028726	+	3'UTR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf38	159013	broad.mit.edu	37	X	40489799	40489799	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2S1	29785	broad.mit.edu	37	19	41711806	41711806	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4B1	1580	broad.mit.edu	37	1	47282821	47282821	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15789216	15789216	+	Splice_Site	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH4	27128	broad.mit.edu	37	22	37688633	37688633	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59727528	59727528	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM2	23500	broad.mit.edu	37	6	39824315	39824315	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	121929281	121929281	+	3'UTR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125299581	125299581	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF6	55827	broad.mit.edu	37	1	168014281	168014281	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L1	139425	broad.mit.edu	37	X	27999004	27999004	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAKD	79877	broad.mit.edu	37	17	43102105	43102105	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155287806	155287806	+	Intron	SNP	G	C	C	rs148346473	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK2	166614	broad.mit.edu	37	4	151154061	151154061	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST2	127579	broad.mit.edu	37	1	154994042	154994043	+	Intron	INS	-	AAC	AAC	rs147730808	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX18	8886	broad.mit.edu	37	2	118572237	118572237	+	5'Flank	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX27	55661	broad.mit.edu	37	20	47852730	47852730	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169336818	169336818	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169351700	169351700	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2C	163259	broad.mit.edu	37	1	115079501	115079501	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1	55635	broad.mit.edu	37	1	68954103	68954103	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC4	120863	broad.mit.edu	37	12	100656028	100656028	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS2	10202	broad.mit.edu	37	14	24113676	24113676	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX58	79132	broad.mit.edu	37	17	40255790	40255790	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO2	1734	broad.mit.edu	37	14	80677416	80677416	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	375378	375378	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	468637	468637	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC3	729582	broad.mit.edu	37	2	218292619	218292619	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC3	729582	broad.mit.edu	37	2	218293239	218293239	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83272048	83272049	+	Intron	INS	-	A	A	rs139135815	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX5	1749	broad.mit.edu	37	7	96650429	96650429	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124376666	124376666	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT3	58524	broad.mit.edu	37	9	990261	990262	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21894027	21894027	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH14	127602	broad.mit.edu	37	1	225468317	225468317	+	Intron	DEL	A	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52392594	52392594	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21049055	21049055	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21108872	21108872	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196729163	196729163	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196788436	196788436	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJA3	9093	broad.mit.edu	37	16	4496797	4496797	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB4	11080	broad.mit.edu	37	1	78471020	78471020	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNPEP	23549	broad.mit.edu	37	2	220250828	220250828	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225637952	225637952	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225702446	225702446	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK6	57572	broad.mit.edu	37	19	11326604	11326604	+	Splice_Site	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	62939744	62939744	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF1	8193	broad.mit.edu	37	19	38709593	38709593	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF3	8110	broad.mit.edu	37	14	73109547	73109547	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154544610	154544610	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64045615	64045615	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113874679	113874679	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100497571	100497571	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28609555	28609555	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117647491	117647491	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSE	29940	broad.mit.edu	37	6	116720666	116720666	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP15	128853	broad.mit.edu	37	20	30436608	30436608	+	Splice_Site	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP19	142679	broad.mit.edu	37	2	183943810	183943810	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP22	56940	broad.mit.edu	37	6	311987	311987	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95457510	95457510	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103027575	103027575	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103027577	103027577	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECM1	1893	broad.mit.edu	37	1	150482377	150482377	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDEM3	80267	broad.mit.edu	37	1	184692837	184692837	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRB	1910	broad.mit.edu	37	13	78492186	78492186	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB4B	84766	broad.mit.edu	37	12	3806162	3806162	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	43926768	43926768	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38406350	38406350	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHD1	10938	broad.mit.edu	37	11	64622371	64622371	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EID3	493861	broad.mit.edu	37	12	104698156	104698156	+	Silent	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK4	440275	broad.mit.edu	37	15	40289271	40289271	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3A	8661	broad.mit.edu	37	10	120819115	120819115	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3M	10480	broad.mit.edu	37	11	32608338	32608338	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL1	1994	broad.mit.edu	37	19	8056513	8056513	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37485937	37485937	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL6	79071	broad.mit.edu	37	4	111119297	111119297	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79387376	79387376	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71508303	71508304	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOPH1	58478	broad.mit.edu	37	4	83375948	83375948	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132182763	132182763	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA1	2041	broad.mit.edu	37	7	143088546	143088546	+	3'UTR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA1	2041	broad.mit.edu	37	7	143098639	143098639	+	Silent	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96996377	96996377	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93979224	93979224	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB3	2049	broad.mit.edu	37	3	184297667	184297667	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN2	22905	broad.mit.edu	37	17	19216680	19216680	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56270546	56270546	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPNP	284729	broad.mit.edu	37	1	17046501	17046501	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRP1	54845	broad.mit.edu	37	8	95680241	95680241	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV3L	440695	broad.mit.edu	37	1	157067534	157067534	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXO1	9156	broad.mit.edu	37	1	242024098	242024098	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT2	2132	broad.mit.edu	37	11	44257898	44257898	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72129059	72129059	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA2	2139	broad.mit.edu	37	20	45700708	45700708	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA3	2140	broad.mit.edu	37	1	28337580	28337580	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11R	50848	broad.mit.edu	37	1	160968812	160968819	+	Intron	DEL	GCCCAGGG	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6175065	6175065	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197026148	197026148	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM2	23017	broad.mit.edu	37	12	50281194	50281194	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120A	23196	broad.mit.edu	37	9	96289347	96289347	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139489309	139489309	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153A	285596	broad.mit.edu	37	5	177156387	177156387	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM155A	728215	broad.mit.edu	37	13	108272983	108272983	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM164A	51101	broad.mit.edu	37	8	79627400	79627400	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM181A	90050	broad.mit.edu	37	14	94394779	94394779	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34148422	34148422	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	11986877	11986877	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83A	84985	broad.mit.edu	37	8	124204261	124204261	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD1	79675	broad.mit.edu	37	2	170425786	170425786	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD3	79072	broad.mit.edu	37	5	7867304	7867304	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92531048	92531048	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126370417	126370417	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN5	10516	broad.mit.edu	37	14	92336728	92336728	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN7	129804	broad.mit.edu	37	2	112942696	112942696	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127641273	127641273	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127684913	127684913	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40384136	40384136	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHSD2	9873	broad.mit.edu	37	11	72710912	72710921	+	Intron	DEL	ACACACACAC	-	-	rs138484535		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125015438	125015438	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125113448	125113448	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125131012	125131012	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERMT3	83706	broad.mit.edu	37	11	63987463	63987463	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF12	2257	broad.mit.edu	37	3	191861776	191861776	+	3'UTR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137793049	137793049	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102902929	102902929	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGGY	55277	broad.mit.edu	37	1	60130611	60130612	+	Intron	INS	-	A	A	rs34041597		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGGY	55277	broad.mit.edu	37	1	60133111	60133111	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FH	2271	broad.mit.edu	37	1	241675424	241675424	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72714520	72714520	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152280056	152280056	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152285231	152285231	+	Missense_Mutation	SNP	G	C	C	rs115087788	byFrequency;by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43859	389761	broad.mit.edu	37	9	84549690	84549690	+	3'UTR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN1	342184	broad.mit.edu	37	15	33359067	33359067	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL1	752	broad.mit.edu	37	17	43318481	43318481	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL2	114793	broad.mit.edu	37	2	153247051	153247051	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL2	114793	broad.mit.edu	37	2	153488720	153488720	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO2	2327	broad.mit.edu	37	1	171168556	171168556	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO5	2330	broad.mit.edu	37	1	146658949	146658949	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159642652	159642652	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89420596	89420597	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXD3	27022	broad.mit.edu	37	1	63789348	63789348	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN4	121643	broad.mit.edu	37	12	109719546	109719546	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR2	2358	broad.mit.edu	37	19	52272116	52272116	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79430250	79430250	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14846067	14846067	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13838333	13838333	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48607768	48607768	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32783375	32783375	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44975465	44975465	+	Silent	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1	79187	broad.mit.edu	37	19	4323510	4323510	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49190243	49190243	+	Missense_Mutation	SNP	G	C	C	rs121909660		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49298823	49298824	+	Intron	DEL	AT	-	-	rs76496060		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162307360	162307360	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162697113	162697113	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTMT	94033	broad.mit.edu	37	5	121188108	121188108	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39169727	39169727	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD10	11211	broad.mit.edu	37	12	130647912	130647912	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD4	8322	broad.mit.edu	37	11	86663040	86663040	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB2	2561	broad.mit.edu	37	5	160753583	160753583	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26825499	26825499	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26961777	26961777	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27572006	27572006	+	Silent	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27777956	27777956	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR2	2570	broad.mit.edu	37	6	89975453	89975454	+	Missense_Mutation	DNP	CG	AT	AT	rs146287342		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26589618	26589618	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE10	643832	broad.mit.edu	37	X	49157763	49157763	+	5'Flank	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAR1	54433	broad.mit.edu	37	4	110745573	110745573	+	Splice_Site	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L3	283431	broad.mit.edu	37	12	101005919	101005919	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9873133	9873133	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9923276	9923276	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22749030	22749030	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBX2	2637	broad.mit.edu	37	2	237074746	237074746	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55216276	55216276	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55224036	55224036	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT1	2678	broad.mit.edu	37	22	25010973	25010973	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHRHR	2692	broad.mit.edu	37	7	31016973	31016973	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42628974	42628974	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA1	2697	broad.mit.edu	37	6	121767996	121767996	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6553357	6553357	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLG1	2734	broad.mit.edu	37	16	74542838	74542838	+	Intron	DEL	A	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP2R	9340	broad.mit.edu	37	17	9729482	9729482	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58601812	58601812	+	3'UTR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYR1	84656	broad.mit.edu	37	16	4873809	4873809	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB1	10691	broad.mit.edu	37	1	29037128	29037128	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPR	2766	broad.mit.edu	37	6	16247255	16247255	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPS	8833	broad.mit.edu	37	3	155611337	155611337	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNGT1	2792	broad.mit.edu	37	7	93539994	93539994	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPAT	8443	broad.mit.edu	37	1	231406498	231406498	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2	2801	broad.mit.edu	37	9	131019257	131019257	+	3'UTR	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155737111	155737111	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP1BA	2811	broad.mit.edu	37	17	4835973	4835973	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20334344	20334344	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAT2	150763	broad.mit.edu	37	2	96690378	96690378	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAT2	150763	broad.mit.edu	37	2	96691484	96691484	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAT2	150763	broad.mit.edu	37	2	96691745	96691745	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132437212	132437212	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	94958395	94958395	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD2	2820	broad.mit.edu	37	2	157426746	157426746	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46856005	46856005	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22414753	22414753	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR142	350383	broad.mit.edu	37	17	72363784	72363784	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25886599	25886599	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89990056	89990056	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90074220	90074220	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5B	51704	broad.mit.edu	37	16	19873044	19873044	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD4	23151	broad.mit.edu	37	22	47022737	47022737	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94454477	94454477	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30959722	30959722	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30959845	30959845	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120687901	120687901	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK5	2901	broad.mit.edu	37	19	42566721	42566721	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9923616	9923616	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	14018818	14018818	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP2	80852	broad.mit.edu	37	3	14553013	14553013	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720363	146720363	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27802672	27802672	+	3'UTR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA2	2939	broad.mit.edu	37	6	52622618	52622618	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106579321	106579321	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS1	3036	broad.mit.edu	37	19	52220291	52220291	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262890	45262890	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55145160	55145160	+	Silent	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18748911	18748911	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18767315	18767315	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18875156	18875156	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31597790	31597790	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43482219	43482219	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM	220296	broad.mit.edu	37	11	124792502	124792502	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28459691	28459691	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28501352	28501352	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEY2	23493	broad.mit.edu	37	6	126080723	126080723	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81374430	81374430	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHAT	55733	broad.mit.edu	37	1	210715173	210715173	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIBADH	11112	broad.mit.edu	37	7	27578107	27578107	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75171376	75171376	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2AC	8338	broad.mit.edu	37	1	149858264	149858264	+	5'Flank	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK2	3099	broad.mit.edu	37	2	75104500	75104500	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DPB1	3115	broad.mit.edu	37	6	33095917	33095917	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185815125	185815125	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186157261	186157261	+	Intron	DEL	G	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS1	3157	broad.mit.edu	37	5	43298642	43298642	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS1	3157	broad.mit.edu	37	5	43299016	43299016	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPH1	3187	broad.mit.edu	37	5	179047814	179047814	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPU	3192	broad.mit.edu	37	1	245023681	245023681	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46636304	46636304	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC8	3224	broad.mit.edu	37	12	54403564	54403564	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD10	3236	broad.mit.edu	37	2	176981711	176981711	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS4	89781	broad.mit.edu	37	22	26854422	26854422	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPX	3263	broad.mit.edu	37	11	6458672	6458672	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25741877	25741877	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25741902	25741902	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B7P2	158160	broad.mit.edu	37	10	38658120	38658120	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA7	3311	broad.mit.edu	37	1	161577074	161577074	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPBAP1	79663	broad.mit.edu	37	3	122471632	122471632	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63256398	63256398	+	Silent	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA2	27429	broad.mit.edu	37	2	74757960	74757960	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUS1	3364	broad.mit.edu	37	7	48005078	48005078	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70843786	70843786	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71007893	71007893	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IBTK	25998	broad.mit.edu	37	6	82881188	82881188	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA14	3448	broad.mit.edu	37	9	21209379	21209379	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27703991	27703991	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC3	9543	broad.mit.edu	37	15	65622070	65622070	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47122378	47122378	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23391091	23391091	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160490963	160490963	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFL2	147920	broad.mit.edu	37	19	46664088	46664088	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130410807	130410807	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133806017	133806017	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL15	3600	broad.mit.edu	37	4	142650999	142650999	+	Splice_Site	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1A	3552	broad.mit.edu	37	2	113535489	113535489	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL6R	3570	broad.mit.edu	37	1	154437510	154437510	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166925838	166925838	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4A	3631	broad.mit.edu	37	2	99193731	99193731	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143067139	143067139	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPPL1	3636	broad.mit.edu	37	11	71940606	71940606	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INVS	27130	broad.mit.edu	37	9	102988411	102988411	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPMK	253430	broad.mit.edu	37	10	59955883	59955884	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCA1	79781	broad.mit.edu	37	2	237253618	237253618	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCB1	9657	broad.mit.edu	37	3	121536733	121536733	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCE	23288	broad.mit.edu	37	7	2611888	2611888	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP1	8826	broad.mit.edu	37	15	91016347	91016347	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156510717	156510717	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX6	79190	broad.mit.edu	37	16	55363004	55363004	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50679354	50679354	+	5'UTR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITCH	83737	broad.mit.edu	37	20	33050003	33050004	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA10	8515	broad.mit.edu	37	1	145539419	145539419	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68607988	68607988	+	Splice_Site	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68609579	68609579	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54802768	54802768	+	Intron	DEL	C	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31425863	31425863	+	Silent	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30492920	30492920	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31284733	31284733	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB5	3693	broad.mit.edu	37	3	124538577	124538577	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITLN1	55600	broad.mit.edu	37	1	160851976	160851976	+	Missense_Mutation	SNP	C	A	A	rs117373725	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITM2A	9452	broad.mit.edu	37	X	78618573	78618573	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26845167	26845168	+	Intron	INS	-	G	G	rs145535530	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24484129	24484129	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IWS1	55677	broad.mit.edu	37	2	128252491	128252491	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147009371	147009371	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124378443	124378443	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124438261	124438261	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAZ	23254	broad.mit.edu	37	1	15420702	15420702	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCMF1	56888	broad.mit.edu	37	2	85255017	85255017	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156234078	156234078	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75436086	75436086	+	3'UTR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75601247	75601248	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	210971035	210971035	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211032938	211032938	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19491721	19491721	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19498354	19498354	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ2	3759	broad.mit.edu	37	17	68171168	68171168	+	5'UTR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK16	83795	broad.mit.edu	37	6	39284543	39284543	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK5	8645	broad.mit.edu	37	6	39158990	39158990	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK5	8645	broad.mit.edu	37	6	39170172	39170172	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78918563	78918563	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	79154575	79154575	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB2	10242	broad.mit.edu	37	3	178525238	178525238	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB3	27094	broad.mit.edu	37	3	178978031	178978031	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154680678	154680678	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138648795	138648795	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196311306	196311306	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196458915	196458915	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215759829	215759829	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD9	54793	broad.mit.edu	37	8	25292931	25292931	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM1A	23028	broad.mit.edu	37	1	23397635	23397635	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10610277	10610277	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142649603	142649603	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDC1	80759	broad.mit.edu	37	6	73951332	73951332	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0196	9897	broad.mit.edu	37	8	126056113	126056113	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8784395	8784395	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0907	22889	broad.mit.edu	37	1	155889692	155889692	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1199	57214	broad.mit.edu	37	15	81229225	81229225	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24398110	24398110	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94066903	94066903	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100053562	100053562	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20926452	20926452	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1919	91749	broad.mit.edu	37	6	111585233	111585233	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245530526	245530526	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901063	51901063	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5C	3800	broad.mit.edu	37	2	149853985	149853985	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39512554	39512554	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL1	3802	broad.mit.edu	37	19	55284756	55284756	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55255151	55255151	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55270550	55270550	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36357307	36357307	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLB	152831	broad.mit.edu	37	4	39436088	39436088	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL24	54800	broad.mit.edu	37	3	183396891	183396891	+	Silent	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLKP1	606293	broad.mit.edu	37	19	51391402	51391402	+	RNA	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC1	3821	broad.mit.edu	37	12	10603248	10603248	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNG1	3827	broad.mit.edu	37	3	186460062	186460062	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT24	192666	broad.mit.edu	37	17	38859498	38859498	+	Missense_Mutation	SNP	G	T	T	rs146935622	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT26	353288	broad.mit.edu	37	17	38925932	38925932	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52986720	52986720	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT75	9119	broad.mit.edu	37	12	52822430	52822430	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT81	3887	broad.mit.edu	37	12	52682308	52682308	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-6	337973	broad.mit.edu	37	21	31914010	31914010	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP24-1	643803	broad.mit.edu	37	21	31654909	31654909	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-5	85289	broad.mit.edu	37	17	39305599	39305599	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAD1	3898	broad.mit.edu	37	1	201352445	201352445	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAG3	3902	broad.mit.edu	37	12	6886480	6886480	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129468152	129468152	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129479508	129479508	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129581800	129581800	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203740013	203740013	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN9	392399	broad.mit.edu	37	9	138557566	138557566	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP1	3936	broad.mit.edu	37	13	46724988	46724988	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCTL	197021	broad.mit.edu	37	15	66850083	66850083	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136567367	136567367	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS14	56891	broad.mit.edu	37	19	40197260	40197260	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9C	654346	broad.mit.edu	37	17	18380276	18380276	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71898398	71898398	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71918219	71918219	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202279399	202279399	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48935912	48935912	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106734	55106734	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMCH1	22998	broad.mit.edu	37	4	41496510	41496510	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPA	3988	broad.mit.edu	37	10	90974763	90974763	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMTK2	22853	broad.mit.edu	37	7	97823189	97823189	+	Nonsense_Mutation	SNP	G	T	T	rs142016830	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090462	238090462	+	RNA	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283867	283867	broad.mit.edu	37	16	65345482	65345482	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285692	285692	broad.mit.edu	37	5	9827194	9827194	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC389033	389033	broad.mit.edu	37	2	130686455	130686455	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21935295	21935295	+	RNA	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21936549	21936549	+	RNA	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91815215	91815215	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728989	728989	broad.mit.edu	37	1	146502690	146502690	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22730646	22730646	+	RNA	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23213943	23213943	+	RNA	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF3	79836	broad.mit.edu	37	X	118112440	118112440	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160905197	160905197	+	RNA	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160978734	160978734	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN2	9663	broad.mit.edu	37	18	2920556	2920557	+	Intron	DNP	TC	GA	GA			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH1	23143	broad.mit.edu	37	13	47295728	47295728	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141267539	141267539	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141459321	141459321	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57552240	57552240	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170038133	170038133	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC15	131578	broad.mit.edu	37	3	194080144	194080144	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52864180	52864180	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133637539	133637539	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70225942	70225942	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77746033	77746033	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77746316	77746316	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTM2	654429	broad.mit.edu	37	12	1940101	1940101	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115738401	115738401	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1904651	1904651	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUM	4060	broad.mit.edu	37	12	91498045	91498045	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	25004876	25004876	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYAR	55646	broad.mit.edu	37	4	4283554	4283554	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39812816	39812816	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	14527931	14527931	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	15866484	15866484	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166990296	166990296	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE2	139599	broad.mit.edu	37	X	75003400	75003400	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65342808	65342808	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77824488	77824488	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77973371	77973371	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAG	4099	broad.mit.edu	37	19	35804348	35804348	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1A	4130	broad.mit.edu	37	15	43814040	43814040	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71482763	71482763	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K4	4216	broad.mit.edu	37	6	161527752	161527752	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK13	5603	broad.mit.edu	37	6	36104167	36104167	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK4	57787	broad.mit.edu	37	19	45783904	45783904	+	Silent	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD6	114785	broad.mit.edu	37	12	57921446	57921446	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC3R	4159	broad.mit.edu	37	20	54824388	54824388	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L2	23101	broad.mit.edu	37	3	182910837	182910837	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100403948	100403948	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94417212	94417212	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47351301	47351301	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47670033	47670033	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDM1	56890	broad.mit.edu	37	12	68709049	68709049	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131900174	131900174	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126770432	126770432	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42159104	42159104	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX2	4223	broad.mit.edu	37	7	15652107	15652107	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112767571	112767571	+	Silent	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METAP2	10988	broad.mit.edu	37	12	95889043	95889043	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP3L	9848	broad.mit.edu	37	4	170913132	170913132	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519B	574469	broad.mit.edu	37	19	54198455	54198455	+	5'Flank	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR524	574478	broad.mit.edu	37	19	54214223	54214223	+	5'Flank	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR890	100126303	broad.mit.edu	37	X	145075849	145075849	+	RNA	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKNK1	8569	broad.mit.edu	37	1	47042367	47042367	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH3	27030	broad.mit.edu	37	14	75515020	75515020	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151949531	151949531	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	152055719	152055719	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT10	8028	broad.mit.edu	37	10	21977377	21977377	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89339535	89339535	+	5'UTR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP19	4327	broad.mit.edu	37	12	56231219	56231219	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55530351	55530354	+	Intron	DEL	ATAA	-	-	rs140821606		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP9	4318	broad.mit.edu	37	20	44645080	44645080	+	3'UTR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108819465	108819465	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4	10934	broad.mit.edu	37	4	174537782	174537782	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6E	245802	broad.mit.edu	37	11	60107400	60107400	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1A	4489	broad.mit.edu	37	16	56670474	56670474	+	5'Flank	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1H	4496	broad.mit.edu	37	16	56704488	56704488	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1IP	644314	broad.mit.edu	37	16	56711054	56711054	+	3'UTR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFSD	64779	broad.mit.edu	37	16	86582041	86582041	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR15	22909	broad.mit.edu	37	15	31197225	31197225	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9007492	9007492	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9074611	9074611	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100681998	100681998	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100699664	100699664	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC4	4585	broad.mit.edu	37	3	195485923	195485923	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUM1L1	139221	broad.mit.edu	37	X	105449921	105449921	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113510084	113510084	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA7	439921	broad.mit.edu	37	17	74684146	74684146	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPH	4608	broad.mit.edu	37	1	203139616	203139616	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77671766	77671766	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77714190	77714190	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10206550	10206550	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108158555	108158555	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108179230	108179230	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108212237	108212237	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10426759	10426759	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23862642	23862642	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7B	57644	broad.mit.edu	37	20	33568395	33568395	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23884152	23884152	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10305168	10305168	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36708089	36708089	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16670539	16670539	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52645751	52645751	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52656830	52656830	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128367139	128367139	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72195609	72195609	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOD1	4654	broad.mit.edu	37	11	17742352	17742352	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69955312	69955312	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89903213	89903213	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	174777303	174777303	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175189490	175189490	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L3	4675	broad.mit.edu	37	X	92927566	92927566	+	Silent	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20066693	20066693	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78401137	78401137	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78570899	78570899	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16905278	16905278	+	Intron	SNP	A	C	C	rs146939257	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16905280	16905280	+	Intron	SNP	A	G	G	rs74391489	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF22P	285622	broad.mit.edu	37	5	85578420	85578420	+	5'UTR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120385043	120385043	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144597983	144597991	+	Intron	DEL	CAGATAGAC	-	-	rs111294330		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144815073	144815073	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54928369	54928369	+	Intron	SNP	C	A	A	rs145066566	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1	10787	broad.mit.edu	37	2	183817573	183817573	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133733463	133733463	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDN	4692	broad.mit.edu	37	15	23931341	23931341	+	3'UTR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA8	4702	broad.mit.edu	37	9	124914641	124914641	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFV1	4723	broad.mit.edu	37	11	67376993	67376993	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152554122	152554122	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD1	121441	broad.mit.edu	37	12	97334181	97334181	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20959283	20959283	+	Intron	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21125785	21125785	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45072974	45072974	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45169837	45169837	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU3	10825	broad.mit.edu	37	11	74705506	74705506	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204915661	204915661	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204924001	204924001	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHLRC2	374354	broad.mit.edu	37	10	115668188	115668188	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHP2	55651	broad.mit.edu	37	5	177580533	177580533	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236148782	236148782	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	125076566	125076566	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63191352	63191352	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63831057	63831057	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56549544	56549544	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55451464	55451464	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56459540	56459540	+	Missense_Mutation	SNP	G	A	A	rs149738419		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC3L	64318	broad.mit.edu	37	10	96122587	96122587	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO1	23420	broad.mit.edu	37	16	14970272	14970272	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120459056	120459056	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS2	4862	broad.mit.edu	37	2	101541645	101541645	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPBWR1	2831	broad.mit.edu	37	8	53852876	53852876	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR3	4883	broad.mit.edu	37	5	32786464	32786464	+	3'UTR	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34898866	34898866	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107834657	107834657	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206590917	206590917	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64453143	64453143	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSF	4905	broad.mit.edu	37	17	44819128	44819128	+	Intron	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131727982	131727982	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTN1	9423	broad.mit.edu	37	17	9066031	9066031	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87549124	87549124	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88670299	88670299	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT6	11162	broad.mit.edu	37	4	123814263	123814263	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP98	4928	broad.mit.edu	37	11	3800112	3800112	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101090890	101090890	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS1	4938	broad.mit.edu	37	12	113354604	113354604	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123554179	123554179	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDH	4967	broad.mit.edu	37	7	44713410	44713410	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161969894	161969894	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPA1	4976	broad.mit.edu	37	3	193382645	193382645	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132643466	132643466	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57995949	57995949	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13A1	79290	broad.mit.edu	37	10	45798994	45798994	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247920915	247920915	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247921140	247921140	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1E2	8388	broad.mit.edu	37	17	3336374	3336374	+	Silent	SNP	G	C	C	rs436972	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247390	248247390	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248201766	248201766	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2S2	56656	broad.mit.edu	37	9	35957729	35957729	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55322796	55322796	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515308	51515308	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D11	219986	broad.mit.edu	37	11	59271537	59271537	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K14	122740	broad.mit.edu	37	14	20483242	20483242	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K15	81127	broad.mit.edu	37	14	20443997	20443997	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M2	390538	broad.mit.edu	37	15	22369514	22369514	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22413662	22413662	+	5'Flank	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22332441	22332441	+	5'UTR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22382673	22382673	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E6	390078	broad.mit.edu	37	11	5862832	5862832	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B3	441608	broad.mit.edu	37	11	58170551	58170551	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H15	403274	broad.mit.edu	37	3	97887663	97887663	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H1	26341	broad.mit.edu	37	3	97852075	97852075	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5R1	219479	broad.mit.edu	37	11	56185246	56185246	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C74	254783	broad.mit.edu	37	12	55641662	55641662	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N1	128372	broad.mit.edu	37	1	158735699	158735699	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N1	128372	broad.mit.edu	37	1	158736113	158736113	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G1	125962	broad.mit.edu	37	19	9225524	9225524	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55872681	55872681	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H3	390152	broad.mit.edu	37	11	55889756	55889756	+	5'Flank	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56128382	56128382	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K3	219473	broad.mit.edu	37	11	56086563	56086563	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57877014	57877014	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24853912	24853913	+	Intron	DEL	TA	-	-	rs143353568		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSMR	9180	broad.mit.edu	37	5	38885471	38885471	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOS	150677	broad.mit.edu	37	2	241078847	241078847	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD6B	51633	broad.mit.edu	37	8	92090719	92090719	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	32058090	32058090	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9524930	9524930	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9721972	9721972	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANX3	116337	broad.mit.edu	37	11	124483029	124483029	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPL	390928	broad.mit.edu	37	19	39575844	39575844	+	5'UTR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176734714	176734714	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176740340	176740340	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162851313	162851313	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242065750	242065750	+	Silent	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102584616	102584616	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX3	5077	broad.mit.edu	37	2	223096823	223096823	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX5	5079	broad.mit.edu	37	9	36846906	36846906	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX5	5079	broad.mit.edu	37	9	36942390	36942390	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX5	5079	broad.mit.edu	37	9	37020659	37020659	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX5	5079	broad.mit.edu	37	9	37020661	37020661	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91132885	91132885	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91369420	91369420	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5605585	5605585	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55600137	55600137	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55664982	55664982	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58208384	58208384	+	Silent	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138452072	138452072	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140249660	140249660	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140168198	140168198	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140215966	140215966	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB13	56123	broad.mit.edu	37	5	140594521	140594521	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140605189	140605189	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB1	29930	broad.mit.edu	37	5	140432413	140432413	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233158234	233158234	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66379146	66379146	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE5A	8654	broad.mit.edu	37	4	120527900	120527900	+	Silent	SNP	C	A	A	rs148467877		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFD	80310	broad.mit.edu	37	11	103797617	103797617	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55153526	55153526	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRL	5157	broad.mit.edu	37	8	17447231	17447231	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA4	9601	broad.mit.edu	37	7	148708856	148708856	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20410574	20410574	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPN	10630	broad.mit.edu	37	1	13940302	13940302	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31700411	31700411	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41900185	41900185	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PENK	5179	broad.mit.edu	37	8	57358389	57358389	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230472853	230472853	+	Splice_Site	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHEX	5251	broad.mit.edu	37	X	22196457	22196457	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PICALM	8301	broad.mit.edu	37	11	85742606	85742606	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIF1	80119	broad.mit.edu	37	15	65114326	65114326	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGT	51604	broad.mit.edu	37	20	44047451	44047451	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGY	84992	broad.mit.edu	37	4	89442811	89442811	+	3'UTR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18511589	18511589	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R6	146850	broad.mit.edu	37	17	8732134	8732134	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1B	8395	broad.mit.edu	37	9	71509364	71509364	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP	5304	broad.mit.edu	37	7	142829448	142829448	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIR	8544	broad.mit.edu	37	X	15473961	15473961	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130839155	130839155	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47925346	47925346	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81208495	81208495	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110457307	110457307	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51556979	51556979	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP1	5317	broad.mit.edu	37	1	201287686	201287686	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP4	8502	broad.mit.edu	37	2	159481557	159481557	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB2	5330	broad.mit.edu	37	15	40590490	40590490	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLGLA	285189	broad.mit.edu	37	2	107007292	107007292	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXND1	23129	broad.mit.edu	37	3	129285420	129285420	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMVK	10654	broad.mit.edu	37	1	154901623	154901623	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84606440	84606440	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD3	10714	broad.mit.edu	37	11	74340460	74340460	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121228644	121228644	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	131976004	131976004	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19563548	19563548	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39246893	39246893	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAPDC1A	196051	broad.mit.edu	37	10	122280406	122280406	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81747225	81747225	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81839421	81839421	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R10	5514	broad.mit.edu	37	6	30572714	30572714	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13L	10848	broad.mit.edu	37	19	45899588	45899588	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R2P3	153743	broad.mit.edu	37	5	156277666	156277666	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPPDE1	51029	broad.mit.edu	37	1	244855205	244855205	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM10	56980	broad.mit.edu	37	11	129785792	129785792	+	Intron	SNP	C	A	A	rs145526575	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23509638	23509638	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRELP	5549	broad.mit.edu	37	1	203452708	203452708	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRF1	5551	broad.mit.edu	37	10	72357934	72357934	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG2	5553	broad.mit.edu	37	11	57156661	57156661	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186269353	186269353	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM1	5557	broad.mit.edu	37	12	57140726	57140726	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57272214	57272214	+	Intron	DEL	T	-	-	rs11352940		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57343118	57343118	+	Intron	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57503445	57503445	+	Intron	DEL	C	-	-	rs11343070		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30066734	30066734	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30100229	30100229	+	Splice_Site	SNP	T	A	A	rs149778265		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30108069	30108069	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR1	10887	broad.mit.edu	37	2	68872884	68872884	+	5'Flank	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF40A	55660	broad.mit.edu	37	2	153512879	153512879	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF40A	55660	broad.mit.edu	37	2	153512975	153512975	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF40B	25766	broad.mit.edu	37	12	50029566	50029566	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR16	51334	broad.mit.edu	37	5	120009917	120009917	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5L	79899	broad.mit.edu	37	11	36422579	36422579	+	5'UTR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS21	10942	broad.mit.edu	37	16	2871299	2871299	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40900086	40900086	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43376024	43376024	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG2	5670	broad.mit.edu	37	19	43579524	43579524	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43514677	43514677	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43430685	43430685	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87060979	87060979	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMF1	9491	broad.mit.edu	37	20	1098707	1098707	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD3	55037	broad.mit.edu	37	2	86363713	86363713	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTER	9317	broad.mit.edu	37	10	16553328	16553328	+	3'UTR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTHLH	5744	broad.mit.edu	37	12	28123114	28123114	+	5'Flank	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTMA	5757	broad.mit.edu	37	2	232577107	232577107	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTMS	5763	broad.mit.edu	37	12	6879553	6879553	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70928553	70928553	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70949044	70949044	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70988239	70988239	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8493159	8493159	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRQ	374462	broad.mit.edu	37	12	81064171	81064171	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRS	5802	broad.mit.edu	37	19	5207955	5207955	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40980621	40980621	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40980818	40980818	+	Silent	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41324902	41324902	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121659286	121659286	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52370307	52370307	+	Intron	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB18	22931	broad.mit.edu	37	10	27815930	27815930	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP1	22930	broad.mit.edu	37	2	135881795	135881795	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB9BP1	9366	broad.mit.edu	37	5	104435720	104435720	+	RNA	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174926950	174926950	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174945135	174945135	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1P	83956	broad.mit.edu	37	12	45459119	45459119	+	RNA	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1	5896	broad.mit.edu	37	11	36594898	36594898	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3	8498	broad.mit.edu	37	19	5924714	5924714	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF5	9771	broad.mit.edu	37	7	22165307	22165307	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF5	9771	broad.mit.edu	37	7	22184650	22184650	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARB	5915	broad.mit.edu	37	3	25611171	25611171	+	Intron	DEL	G	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80376118	80376118	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1CC1	9821	broad.mit.edu	37	8	53547561	53547561	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM16	22828	broad.mit.edu	37	6	155095107	155095107	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM17	84991	broad.mit.edu	37	10	6154179	6154179	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM34	23029	broad.mit.edu	37	1	235294908	235294908	+	3'UTR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCBTB2	1102	broad.mit.edu	37	13	49075967	49075967	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103201971	103201971	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103314409	103314409	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REN	5972	broad.mit.edu	37	1	204125605	204125605	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC2	5982	broad.mit.edu	37	7	73646355	73646355	+	3'UTR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL1	23179	broad.mit.edu	37	1	183874048	183874048	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240939344	240939344	+	3'UTR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDD1	84236	broad.mit.edu	37	2	227778956	227778956	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130926866	130926866	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104671991	104671991	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40503707	40503707	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEH1	246243	broad.mit.edu	37	2	3595451	3595451	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31511805	31511806	+	Intron	INS	-	A	A	rs111259754		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144B	255488	broad.mit.edu	37	6	18436164	18436164	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30329835	30329835	+	Intron	SNP	C	A	A	rs148201920	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK1	6093	broad.mit.edu	37	18	18539772	18539772	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROMO1	140823	broad.mit.edu	37	20	34287501	34287501	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORA	6095	broad.mit.edu	37	15	60803809	60803809	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10467409	10467409	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10467546	10467546	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55534164	55534164	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113307697	113307697	+	Splice_Site	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL4	6124	broad.mit.edu	37	15	66792023	66792023	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213341189	213341189	+	Intron	DEL	T	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRM2	6241	broad.mit.edu	37	2	10267475	10267475	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	123005117	123005117	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTKN	6242	broad.mit.edu	37	2	74654356	74654356	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92988199	92988199	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1	861	broad.mit.edu	37	21	37080577	37080577	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237754274	237754274	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237886376	237886376	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237886437	237886437	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237994085	237994085	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33840249	33840249	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33936549	33936549	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAA1	6288	broad.mit.edu	37	11	18291032	18291032	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134991015	134991015	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAR1A	56681	broad.mit.edu	37	10	71923803	71923803	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB1	6304	broad.mit.edu	37	3	18427808	18427808	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78133840	78133840	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD2	152579	broad.mit.edu	37	4	54179819	54179819	+	Silent	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCG2	7857	broad.mit.edu	37	2	224462916	224462916	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCIN	85477	broad.mit.edu	37	7	12692317	12692317	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62025277	62025277	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38598637	38598637	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167262762	167262762	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52107304	52107305	+	Intron	INS	-	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL3	57147	broad.mit.edu	37	1	169823654	169823654	+	Silent	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDC2	6383	broad.mit.edu	37	8	97620541	97620541	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4198109	4198109	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71344885	71344885	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71354344	71354344	+	Splice_Site	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDPR	8436	broad.mit.edu	37	2	192711169	192711169	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDSL	113675	broad.mit.edu	37	12	113867258	113867258	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2L	9728	broad.mit.edu	37	15	49304083	49304083	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELE	6401	broad.mit.edu	37	1	169698456	169698456	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169562975	169562975	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9051937	9051937	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9202068	9202068	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9443461	9443461	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122646650	122646650	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	47656821	47656821	+	Intron	SNP	G	C	C	rs149720539	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48056265	48056265	+	Splice_Site	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48056590	48056590	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB7	8710	broad.mit.edu	37	18	61468104	61468104	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINC1	462	broad.mit.edu	37	1	173879971	173879971	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167189325	167189325	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42532344	42532344	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42533272	42533272	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37423645	37423645	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B2	10992	broad.mit.edu	37	11	65830907	65830908	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF4	57794	broad.mit.edu	37	19	19413082	19413082	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155771455	155771455	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14157875	14157875	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14412203	14412203	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67126087	67126087	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67132980	67132980	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK269	79834	broad.mit.edu	37	15	77407367	77407380	+	Frame_Shift_Del	DEL	GGCTCCTCTGCTTC	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51172584	51172584	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232561520	232561520	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX2	10736	broad.mit.edu	37	2	45236131	45236131	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIV2L2	23517	broad.mit.edu	37	5	54639331	54639331	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIV2L2	23517	broad.mit.edu	37	5	54645457	54645457	+	Missense_Mutation	SNP	G	A	A	rs144334570		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160604647	160604647	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160607008	160607008	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103701760	103701760	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43219625	43219625	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25916033	25916033	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119026324	119026324	+	Splice_Site	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A3	6507	broad.mit.edu	37	5	36679861	36679861	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15072906	15072906	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63129963	63129963	+	RNA	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A11	55867	broad.mit.edu	37	11	64335165	64335165	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A7	10864	broad.mit.edu	37	6	43267830	43267830	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A6	80024	broad.mit.edu	37	12	113758557	113758557	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A10	1468	broad.mit.edu	37	17	79687006	79687006	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A37	51312	broad.mit.edu	37	8	23428995	23428995	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92330587	92330587	+	Silent	SNP	C	A	A	rs147941350		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A8	116369	broad.mit.edu	37	6	35945028	35945028	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A3	6515	broad.mit.edu	37	12	8074159	8074159	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A1	6569	broad.mit.edu	37	5	176823935	176823935	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18266707	18266707	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18266752	18266752	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A8	64116	broad.mit.edu	37	4	103236956	103236956	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC40A1	30061	broad.mit.edu	37	2	190428407	190428407	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A1	23446	broad.mit.edu	37	9	108098079	108098079	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162735795	162735795	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74491375	74491375	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A7	9497	broad.mit.edu	37	3	27444931	27444931	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101577806	101577806	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101603406	101603406	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85267179	85267179	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170216429	170216430	+	Intron	DEL	CA	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A1	6541	broad.mit.edu	37	13	30091809	30091809	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40402539	40402539	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A2	6543	broad.mit.edu	37	19	47969457	47969457	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70612588	70612588	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70634343	70634343	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70634379	70634379	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143567222	143567222	+	5'UTR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21030768	21030768	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101795359	101795359	+	Splice_Site	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168222423	168222423	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD3	4088	broad.mit.edu	37	15	67402544	67402544	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD4	4089	broad.mit.edu	37	18	48584798	48584798	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCAL1	50485	broad.mit.edu	37	2	217281150	217281150	+	Intron	SNP	A	C	C	rs138448911	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17851630	17851630	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70490231	70490231	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMTNL2	342527	broad.mit.edu	37	17	4500545	4500545	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMTN	6525	broad.mit.edu	37	22	31491117	31491117	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88410030	88410030	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	245961707	245961707	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246021924	246021924	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25222149	25222149	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51705341	51705341	+	Silent	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1285284	1285284	+	Intron	SNP	G	A	A	rs113659235		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX13	23161	broad.mit.edu	37	7	17833746	17833746	+	3'UTR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX14	57231	broad.mit.edu	37	6	86256841	86256841	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX9	51429	broad.mit.edu	37	6	158288493	158288493	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOHLH2	54937	broad.mit.edu	37	13	36767892	36767892	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106563415	106563415	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106602542	106602542	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORD	6652	broad.mit.edu	37	15	45345434	45345434	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	23764304	23764305	+	Intron	DEL	GT	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231037615	231037615	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231112563	231112563	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231177523	231177523	+	3'UTR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214794721	214794721	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214878902	214878902	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118558770	118558770	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXE	171489	broad.mit.edu	37	X	140785893	140785894	+	Intron	DNP	GG	AT	AT			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE2	441273	broad.mit.edu	37	7	102194753	102194753	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220326530	220326530	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPESP1	246777	broad.mit.edu	37	15	69238076	69238076	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG11	80208	broad.mit.edu	37	15	44903124	44903124	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINLW1	57119	broad.mit.edu	37	20	44171164	44171164	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158609219	158609219	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158622334	158622334	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158622401	158622401	+	Silent	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP68	6730	broad.mit.edu	37	17	74056564	74056564	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK1	6732	broad.mit.edu	37	6	35837144	35837144	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX6	280657	broad.mit.edu	37	X	47969659	47969659	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53084629	53084629	+	Silent	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC5	81849	broad.mit.edu	37	1	77528766	77528766	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA2	8128	broad.mit.edu	37	15	92977389	92977389	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104062572	104062572	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104122592	104122592	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136456019	136456019	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBPL1	57559	broad.mit.edu	37	10	90672782	90672782	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT1	6772	broad.mit.edu	37	2	191855977	191855977	+	Silent	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STC1	6781	broad.mit.edu	37	8	23702417	23702417	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK36	27148	broad.mit.edu	37	2	219562167	219562167	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STMN4	81551	broad.mit.edu	37	8	27098753	27098753	+	Missense_Mutation	SNP	C	A	A	rs143115752		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON2	85439	broad.mit.edu	37	14	81743441	81743441	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON2	85439	broad.mit.edu	37	14	81837478	81837478	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN4	29888	broad.mit.edu	37	19	47228504	47228504	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STS	412	broad.mit.edu	37	X	7177473	7177473	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120673790	120673790	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70488290	70488290	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD4	55061	broad.mit.edu	37	1	223395385	223395385	+	3'UTR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD4	55061	broad.mit.edu	37	1	223402472	223402472	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCE1L	100130958	broad.mit.edu	37	16	77241310	77241311	+	Intron	DEL	AG	-	-	rs10604226		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10929891	10929891	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58444045	58444045	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYDE2	84144	broad.mit.edu	37	1	85665887	85665892	+	Intron	DEL	AAACAG	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN3	8224	broad.mit.edu	37	22	32933863	32933863	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN3	8224	broad.mit.edu	37	22	33376546	33376546	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64574335	64574335	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT16	83851	broad.mit.edu	37	14	62536254	62536254	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT1	6857	broad.mit.edu	37	12	79747444	79747444	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT9	143425	broad.mit.edu	37	11	7464823	7464823	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR9	134860	broad.mit.edu	37	6	132860208	132860208	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123970023	123970023	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAP2	6891	broad.mit.edu	37	6	32803313	32803313	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R50	259296	broad.mit.edu	37	12	11139452	11139452	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D22A	25771	broad.mit.edu	37	22	47308179	47308179	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D2	55357	broad.mit.edu	37	9	100965844	100965844	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D2	55357	broad.mit.edu	37	9	100995870	100995870	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D9	23158	broad.mit.edu	37	4	141600073	141600073	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX15	6913	broad.mit.edu	37	1	119441574	119441574	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114842278	114842278	+	Intron	DEL	A	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX6	6911	broad.mit.edu	37	16	30097621	30097621	+	Silent	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTN3	26123	broad.mit.edu	37	10	97447340	97447340	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET1	80312	broad.mit.edu	37	10	70446363	70446363	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET3	200424	broad.mit.edu	37	2	74274579	74274579	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30701798	30701798	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30703672	30703672	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI2	7980	broad.mit.edu	37	7	93518520	93518520	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133475542	133475542	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB1	7040	broad.mit.edu	37	19	41847732	41847732	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB2	7042	broad.mit.edu	37	1	218591992	218591992	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LY	90655	broad.mit.edu	37	Y	3447687	3447687	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133975529	133975529	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133984889	133984889	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THPO	7066	broad.mit.edu	37	3	184090955	184090955	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THUMPD1	55623	broad.mit.edu	37	16	20750214	20750214	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32639193	32639193	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	30020222	30020222	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TK2	7084	broad.mit.edu	37	16	66551088	66551088	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63089468	63089468	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR10	81793	broad.mit.edu	37	4	38777082	38777082	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2573092	2573092	+	Intron	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2578061	2578061	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC3	342125	broad.mit.edu	37	15	81660485	81660485	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC5	79838	broad.mit.edu	37	16	19467959	19467960	+	Intron	DNP	GG	TT	TT			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO5A	145942	broad.mit.edu	37	15	38229763	38229763	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129559256	129559256	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129822151	129822151	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32953939	32953939	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32959944	32959944	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15267198	15267198	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM39B	55116	broad.mit.edu	37	1	32542848	32542848	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM44	93109	broad.mit.edu	37	3	194313775	194313775	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM45A	55076	broad.mit.edu	37	3	100295667	100295667	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS4	56649	broad.mit.edu	37	11	117945613	117945613	+	5'Flank	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS7	344805	broad.mit.edu	37	3	111794162	111794162	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117826313	117826313	+	Silent	SNP	G	T	T	rs139061925		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF12-TNFSF13	407977	broad.mit.edu	37	17	7454312	7454312	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175295679	175295679	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175372213	175372213	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175454460	175454460	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175650435	175650435	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47467812	47467812	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR1AIP2	163590	broad.mit.edu	37	1	179815260	179815260	+	Silent	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53BP1	7158	broad.mit.edu	37	15	43712550	43712550	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53I3	9540	broad.mit.edu	37	2	24305877	24305877	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578463	7578463	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113728635	113728635	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPD52L1	7164	broad.mit.edu	37	6	125493298	125493299	+	Intron	INS	-	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPD52L1	7164	broad.mit.edu	37	6	125541166	125541166	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPPP2	122664	broad.mit.edu	37	14	21500275	21500275	+	3'UTR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42229535	42229535	+	Splice_Site	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42251330	42251330	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML4	285852	broad.mit.edu	37	6	41197099	41197099	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM24	8805	broad.mit.edu	37	7	138262371	138262371	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM31	11074	broad.mit.edu	37	6	30071104	30071104	+	3'UTR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM50	135892	broad.mit.edu	37	7	72732812	72732812	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248028134	248028134	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248039828	248039828	+	3'UTR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14507326	14507326	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72965846	72965846	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38320458	38320458	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73408554	73408554	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142569474	142569474	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ1	10194	broad.mit.edu	37	18	72998442	72998442	+	Silent	SNP	G	T	T	rs149658226	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31769558	31769558	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN2	10100	broad.mit.edu	37	1	115596060	115596060	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSTA3	7264	broad.mit.edu	37	8	144698596	144698596	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43226905	43226906	+	Missense_Mutation	DNP	GG	CT	CT	rs55908453		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC12	54970	broad.mit.edu	37	11	113211455	113211455	+	Missense_Mutation	SNP	G	T	T	rs142932707		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC27	55622	broad.mit.edu	37	2	33003038	33003038	+	Silent	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80744816	80744816	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179416929	179416929	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179429386	179429386	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179443597	179443597	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179463770	179463770	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179472431	179472431	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179495957	179495957	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB2A	7280	broad.mit.edu	37	6	3154116	3154116	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP6	85378	broad.mit.edu	37	22	50656172	50656172	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP6	85378	broad.mit.edu	37	22	50656174	50656174	+	Silent	SNP	C	T	T	rs141707083		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37898427	37898427	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC6	347736	broad.mit.edu	37	3	138023736	138023736	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UACA	55075	broad.mit.edu	37	15	70980140	70980140	+	Silent	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UACA	55075	broad.mit.edu	37	15	70991968	70991968	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404163	34404163	+	RNA	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404219	34404219	+	RNA	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR3	130507	broad.mit.edu	37	2	170917828	170917828	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19452860	19452860	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103298029	103298029	+	Intron	SNP	C	A	A	rs146117297	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN4	23190	broad.mit.edu	37	2	136536527	136536527	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCHL1	7345	broad.mit.edu	37	4	41270006	41270006	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCP1	7350	broad.mit.edu	37	4	141489083	141489083	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B15	7366	broad.mit.edu	37	4	69535947	69535947	+	Silent	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK2	9706	broad.mit.edu	37	17	19705048	19705048	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54589933	54589933	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96171478	96171478	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210650993	210650993	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPK1B	7348	broad.mit.edu	37	3	118906753	118906753	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229772365	229772365	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126216852	126216852	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215800755	215800755	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215901279	215901279	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216373253	216373253	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179483594	179483594	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP14	9097	broad.mit.edu	37	18	197564	197564	+	Intron	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP5	8078	broad.mit.edu	37	12	6967789	6967789	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8993066	8993066	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101740177	101740177	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP23	84294	broad.mit.edu	37	8	117783699	117783699	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107446206	107446206	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107446503	107446503	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	130678270	130678270	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	2140510	2140510	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37812257	37812257	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38965073	38965073	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42641301	42641301	+	IGR	SNP	T	C	C	rs142237633	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42647866	42647866	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42772155	42772155	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	49268089	49268089	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	50420840	50420840	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	5511586	5511586	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	80334810	80334810	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	9298792	9298792	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	112169423	112169423	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	113113623	113113623	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115810835	115810835	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	128491527	128491527	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	128525913	128525913	+	IGR	SNP	C	A	A	rs111533640		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130487733	130487733	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	25328454	25328454	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	28577047	28577047	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	28842196	28842196	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29748049	29748049	+	IGR	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49942067	49942067	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56365689	56365689	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56458110	56458110	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59199507	59199507	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	60010538	60010538	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	67700554	67700554	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71304875	71304875	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87823231	87823231	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	88812489	88812489	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94681621	94681621	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	95696399	95696399	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97874621	97874621	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	102944609	102944609	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	105371468	105371468	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	105371473	105371473	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106241800	106241800	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106409940	106409940	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106410585	106410585	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	10659788	10659788	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	124719594	124719594	+	IGR	SNP	T	C	C	rs141799019	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	13663545	13663545	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	17008138	17008138	+	IGR	DEL	A	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	19211589	19211590	+	IGR	INS	-	T	T	rs146868281	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	21888361	21888361	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30378338	30378338	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33139573	33139573	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	4000111	4000111	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43500420	43500420	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43965142	43965142	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	44054077	44054077	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	44054983	44054983	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53061861	53061861	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	72479344	72479344	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	76684025	76684025	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	76684149	76684149	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77090843	77090843	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77627115	77627115	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	79187873	79187873	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80646030	80646030	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80672681	80672681	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80732827	80732827	+	IGR	SNP	C	G	G	rs12317655		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	83545933	83545933	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	87313532	87313532	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98476022	98476022	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111589514	111589514	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	112198156	112198156	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	35416174	35416174	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	49503396	49503396	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	51455373	51455373	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54603713	54603713	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55015014	55015014	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57889219	57889219	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59188229	59188229	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	73674823	73674823	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79484364	79484364	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20148211	20148211	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44546938	44546938	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	46298726	46298726	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	47281412	47281413	+	IGR	DEL	AT	-	-	rs71832172		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48619352	48619352	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	86209115	86209115	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99381419	99381419	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102369490	102369490	+	IGR	SNP	C	A	A	rs151158832	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20121346	20121346	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20433948	20433948	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20468126	20468126	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23140315	23140315	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23864555	23864555	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30433581	30433581	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30808672	30808672	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30808751	30808751	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31583425	31583425	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34781990	34781990	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34951579	34951579	+	IGR	DEL	T	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	43408663	43408663	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	43992555	43992555	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	48235545	48235545	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	48241556	48241556	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	56299123	56299123	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	70903914	70903915	+	IGR	DNP	GG	TT	TT			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78068677	78068677	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	82160530	82160530	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88301419	88301419	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96207084	96207084	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97301818	97301818	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97700908	97700908	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20607136	20607136	+	IGR	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31817790	31817790	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32118149	32118149	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32123218	32123218	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32830575	32830575	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32849762	32849762	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32856800	32856800	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33044315	33044315	+	IGR	SNP	G	C	C	rs77858419		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33366680	33366680	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33373372	33373372	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33402057	33402057	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33490825	33490825	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33500414	33500414	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33504316	33504316	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605366	33605366	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33752641	33752641	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33953604	33953604	+	IGR	SNP	G	T	T	rs76592200		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34327775	34327775	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34655571	34655571	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	47872542	47872542	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51984072	51984072	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55813804	55813804	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59788655	59788655	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	64294537	64294537	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65268485	65268485	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	66218030	66218030	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73840462	73840462	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79350409	79350409	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79765161	79765161	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79911554	79911554	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	82468989	82468989	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	9250752	9250752	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	14834167	14834167	+	IGR	DEL	A	-	-	rs111604001		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25274453	25274453	+	IGR	SNP	C	T	T	rs74587744		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25301549	25301549	+	IGR	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	36111925	36111925	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52331092	52331092	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	53628817	53628817	+	IGR	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	66777442	66777442	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	67914883	67914883	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	69617179	69617179	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14222147	14222147	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22319384	22319384	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	5003242	5003242	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	52447317	52447317	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57637487	57637487	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15925294	15925294	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22497669	22497669	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44967967	44967967	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44972101	44972101	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	52613778	52613779	+	IGR	DNP	GA	TT	TT			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53243577	53243577	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53769908	53769908	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101736495	101736495	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120015642	120015642	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120138905	120138905	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121482275	121482275	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143423010	143423010	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146526787	146526787	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146595722	146595722	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149092387	149092387	+	IGR	SNP	C	T	T	rs76512356		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152433347	152433347	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153430192	153430192	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166549921	166549921	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	171052865	171052865	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	182599365	182599365	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189959207	189959207	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189959224	189959224	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199878466	199878466	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	203552959	203552959	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208770240	208770240	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221063579	221063579	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247393396	247393396	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247902282	247902282	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247991680	247991680	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248551911	248551911	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37119794	37119794	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	5044305	5044305	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	55476287	55476287	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	56937000	56937000	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	68708699	68708700	+	IGR	DNP	CG	GA	GA			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80917425	80917425	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	91275311	91275311	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10815217	10815217	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	18749461	18749462	+	IGR	DEL	CA	-	-	rs75784696		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	24762250	24762250	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25742748	25742748	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29581381	29581381	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29601076	29601076	+	IGR	SNP	A	T	T	rs145456681	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29604294	29604294	+	IGR	SNP	T	C	C	rs138025943		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29604763	29604763	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	34341498	34341498	+	IGR	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	39207754	39207754	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	51573964	51573964	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53974750	53974750	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	55609890	55609890	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	57365129	57365129	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10891624	10891624	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11122152	11122152	+	IGR	SNP	C	T	T	rs58471377		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11122728	11122728	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14757064	14757064	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14916543	14916543	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	18494002	18494002	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	23526308	23526308	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9840741	9840741	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123245	16123245	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16350243	16350243	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16953565	16953565	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17338854	17338854	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117915859	117915859	+	IGR	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132383591	132383591	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	147596990	147596990	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154277193	154277194	+	IGR	DNP	CC	AA	AA			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162425402	162425402	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	18635028	18635028	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194142316	194142316	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	20440583	20440583	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	213717533	213717533	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217475060	217475060	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	221819784	221819784	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	226736104	226736104	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	31858736	31858736	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4156169	4156169	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4874702	4874703	+	IGR	INS	-	A	A	rs150649904	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	527083	527083	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52797927	52797927	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	79324113	79324113	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	8538455	8538455	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91636081	91636081	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91663063	91663063	+	IGR	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	112898091	112898091	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116337150	116337150	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117461644	117461644	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	123739804	123739804	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	125725182	125725182	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	126880291	126880291	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	135611809	135611809	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	135924810	135924810	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	141539839	141539839	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	150438287	150438287	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	15183114	15183114	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	156881612	156881612	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	165904379	165904379	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	167971190	167971190	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	172991862	172991862	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	182328468	182328468	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31000183	31000183	+	IGR	DEL	A	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75908969	75908969	+	IGR	SNP	C	T	T	rs112823076		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75908986	75908986	+	IGR	SNP	C	A	A	rs113959927		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76483516	76483516	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76483565	76483565	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76484426	76484426	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97926457	97926457	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117494024	117494024	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	130060471	130060471	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135967045	135967045	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139481950	139481950	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17061843	17061843	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	171861382	171861382	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	180861840	180861840	+	IGR	DEL	T	-	-	rs113158167		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190200953	190200953	+	IGR	SNP	C	G	G	rs142288893		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190631297	190631297	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190647219	190647219	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190653774	190653774	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190667921	190667921	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	191030751	191030751	+	IGR	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	20197451	20197451	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012567	33012567	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012982	33012982	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	34675188	34675188	+	IGR	SNP	C	A	A	rs143357372	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45872664	45872664	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49514908	49514908	+	IGR	SNP	C	T	T	rs55817618		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65296696	65296696	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69727152	69727152	+	IGR	DEL	C	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69863237	69863237	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70108639	70108639	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9025083	9025083	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97824173	97824173	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110285531	110285531	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	115759121	115759121	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	132996345	132996345	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144364482	144364482	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	160370404	160370404	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	162760252	162760253	+	IGR	INS	-	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	172686097	172686097	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25909782	25909782	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	28048555	28048555	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	32990191	32990191	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	37883252	37883254	+	IGR	DEL	AGG	-	-	rs35808309		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	44468360	44468360	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	44587614	44587615	+	IGR	INS	-	A	A	rs145223986	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	53695661	53695661	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	58171550	58171550	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	6276192	6276192	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	71713589	71713589	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	83042603	83042603	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	83969791	83969791	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92604284	92604284	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97361715	97361715	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99597556	99597556	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112938061	112938061	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	122001169	122001169	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	138316786	138316786	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	145712934	145712934	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	164520395	164520395	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	47798723	47798724	+	IGR	DNP	CA	AG	AG			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50167977	50167977	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57975014	57975014	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58578877	58578877	+	IGR	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63567033	63567033	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63937640	63937640	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66547807	66547807	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	71760969	71760969	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78310481	78310483	+	IGR	DEL	CTT	-	-	rs66754434		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80777066	80777066	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	82143751	82143751	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87607076	87607076	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93467385	93467385	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	96111238	96111238	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	97096645	97096645	+	IGR	DEL	G	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	99716333	99716333	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	119525249	119525249	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	122962993	122962996	+	IGR	DEL	GAGT	-	-	rs139209126		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141110076	141110076	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142587751	142587751	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145418903	145418903	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	150238985	150238985	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	150339052	150339052	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	20145369	20145369	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	22867874	22867874	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	23602997	23602997	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46796247	46796247	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48998637	48998638	+	IGR	DEL	GT	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	49188386	49188386	+	IGR	DEL	A	-	-	rs34318819		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	50911418	50911418	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	51629679	51629679	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	51711153	51711153	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52183747	52183747	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53815029	53815029	+	IGR	DEL	G	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54053771	54053772	+	IGR	INS	-	TGTG	TGTG	rs148111648	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54482321	54482321	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54500714	54500715	+	IGR	INS	-	A	A	rs148967200	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55003759	55003759	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56244005	56244005	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56296349	56296349	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56359166	56359166	+	IGR	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57556701	57556702	+	IGR	INS	-	ATGGT	ATGGT	rs143026947		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57832916	57832916	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61826363	61826363	+	IGR	SNP	T	G	G	rs140569674	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61828364	61828364	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61831681	61831681	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61832637	61832637	+	IGR	SNP	G	T	T	rs143990271	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63032868	63032868	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63033642	63033642	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63035194	63035194	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63287851	63287852	+	IGR	INS	-	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63574596	63574596	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63894255	63894255	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	76597782	76597782	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88194207	88194207	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	107229282	107229282	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138710271	138710271	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34779807	34779808	+	IGR	INS	-	GT	GT	rs147112330	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58200470	58200470	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	66775982	66775982	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	6829696	6829696	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	75003739	75003739	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	84455999	84455999	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86755239	86755239	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88801413	88801413	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89562694	89562694	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93415770	93415770	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94658378	94658378	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94659199	94659199	+	IGR	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	96727819	96727819	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	97081381	97081381	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	110953411	110953411	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	117609391	117609391	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	121526438	121526438	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122930139	122930139	+	IGR	SNP	T	C	C	rs139977739	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	125513201	125513201	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	141036193	141036193	+	IGR	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27811391	27811391	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29825306	29825306	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	36816654	36816654	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44175622	44175622	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66482111	66482111	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68405848	68405848	+	IGR	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7211442	7211442	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90796324	90796324	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122251519	122251519	+	IGR	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	13264770	13264770	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135027062	135027062	+	IGR	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136744077	136744077	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139479715	139479715	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146312206	146312206	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37402582	37402582	+	IGR	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45773048	45773048	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74963416	74963416	+	IGR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	75250070	75250070	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13501651	13501651	+	IGR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	3734742	3734743	+	IGR	DNP	AG	TT	TT			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59002006	59002006	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9934778	9934778	+	IGR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9936017	9936017	+	IGR	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP7	6845	broad.mit.edu	37	X	155119300	155119300	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP7	6845	broad.mit.edu	37	X	155138279	155138280	+	Intron	INS	-	TTTG	TTTG			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160385651	160385651	+	Silent	SNP	G	T	T	rs138071353		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108115928	108115928	+	3'UTR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIL1	7429	broad.mit.edu	37	2	219288980	219288980	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VLDLR	7436	broad.mit.edu	37	9	2639783	2639783	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN2	8875	broad.mit.edu	37	6	133072721	133072721	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN2	8875	broad.mit.edu	37	6	133073612	133073612	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79867358	79867358	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100149106	100149106	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38869770	38869770	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK3	51231	broad.mit.edu	37	19	50510998	50510998	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98750229	98750229	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98823108	98823108	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WARS2	10352	broad.mit.edu	37	1	119659560	119659560	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27151524	27151524	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDHD1	11169	broad.mit.edu	37	14	55423645	55423645	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177050046	177050046	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177063245	177063245	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR41	55255	broad.mit.edu	37	5	76728893	76728893	+	3'UTR	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR45	11152	broad.mit.edu	37	X	48934035	48934035	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR75	84128	broad.mit.edu	37	2	190328594	190328594	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR78	79819	broad.mit.edu	37	1	67299719	67299719	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR78	79819	broad.mit.edu	37	1	67390500	67390500	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR92	116143	broad.mit.edu	37	2	68384702	68384702	+	5'Flank	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC2	10406	broad.mit.edu	37	20	44108746	44108746	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT9B	7484	broad.mit.edu	37	17	44953888	44953888	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32413611	32413611	+	Splice_Site	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78859647	78859647	+	Intron	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78980676	78980676	+	Intron	DEL	G	-	-			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168102547	168102547	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKRX	402415	broad.mit.edu	37	X	100182927	100182927	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183432968	183432968	+	Silent	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZACN	353174	broad.mit.edu	37	17	74075704	74075704	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H6	376940	broad.mit.edu	37	2	113081964	113081964	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC5	203430	broad.mit.edu	37	X	77912645	77912645	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC5	203430	broad.mit.edu	37	X	77912649	77912649	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31813004	31813004	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72057190	72057190	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68232827	68232827	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147113617	147113617	+	Intron	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147114052	147114052	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN1	7586	broad.mit.edu	37	7	99631651	99631651	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM6	9204	broad.mit.edu	37	1	35480591	35480591	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF133	7692	broad.mit.edu	37	20	18296740	18296740	+	Silent	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF177	7730	broad.mit.edu	37	19	9492394	9492394	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22156642	22156642	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF226	7769	broad.mit.edu	37	19	44681152	44681152	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF232	7775	broad.mit.edu	37	17	5012681	5012681	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF233	353355	broad.mit.edu	37	19	44770584	44770584	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF251	90987	broad.mit.edu	37	8	145947717	145947717	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF260	339324	broad.mit.edu	37	19	37005529	37005529	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF317	57693	broad.mit.edu	37	19	9271828	9271828	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF330	27309	broad.mit.edu	37	4	142152618	142152618	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF331	55422	broad.mit.edu	37	19	54080157	54080157	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF347	84671	broad.mit.edu	37	19	53643919	53643919	+	Missense_Mutation	SNP	C	A	A	rs150489253	byFrequency	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64382827	64382827	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF420	147923	broad.mit.edu	37	19	37618139	37618139	+	Silent	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49798425	49798425	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF48	197407	broad.mit.edu	37	16	30409122	30409122	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF502	91392	broad.mit.edu	37	3	44751540	44751540	+	5'Flank	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF502	91392	broad.mit.edu	37	3	44762981	44762981	+	Silent	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF525	170958	broad.mit.edu	37	19	53884223	53884223	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF534	147658	broad.mit.edu	37	19	52937330	52937330	+	Silent	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF534	147658	broad.mit.edu	37	19	52955184	52955184	+	3'UTR	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31041624	31041624	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF540	163255	broad.mit.edu	37	19	38102961	38102961	+	Silent	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF568	374900	broad.mit.edu	37	19	37428074	37428074	+	Silent	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF589	51385	broad.mit.edu	37	3	48310756	48310756	+	3'UTR	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	67948	67948	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF658	26149	broad.mit.edu	37	9	40773252	40773252	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF667	63934	broad.mit.edu	37	19	56969411	56969411	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF678	339500	broad.mit.edu	37	1	227894189	227894189	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF713	349075	broad.mit.edu	37	7	55991075	55991075	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57522270	57522270	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF71	58491	broad.mit.edu	37	19	57133591	57133591	+	Silent	SNP	G	T	T	rs17851130		TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF772	400720	broad.mit.edu	37	19	57985206	57985206	+	Silent	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF827	152485	broad.mit.edu	37	4	146791340	146791340	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57768030	57768030	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187693380	187693380	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZZ3	26009	broad.mit.edu	37	1	78097874	78097874	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30992723	30992723	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114578451	114578451	+	RNA	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40919367	40919367	+	RNA	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80762069	80762069	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22539519	22539519	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25420071	25420071	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84838954	84838954	+	5'Flank	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29342535	29342535	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34741126	34741126	+	5'Flank	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34981950	34981950	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	35037342	35037342	+	5'Flank	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5313236	5313236	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	18332327	18332327	+	RNA	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29199044	29199044	+	Intron	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	42989533	42989533	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	52196437	52196437	+	RNA	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142668895	142668895	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	179556671	179556671	+	5'Flank	SNP	A	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	21753585	21753585	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133066841	133066841	+	RNA	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	65727858	65727858	+	Intron	SNP	G	T	T	rs142978175	by1000genomes	TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89309943	89309943	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89346067	89346067	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180538452	180538452	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180538627	180538627	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180546884	180546884	+	Intron	SNP	A	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	44155522	44155522	+	5'Flank	SNP	T	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	653553	653553	+	Intron	SNP	T	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	187396338	187396338	+	Intron	SNP	G	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69337123	69337123	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69343022	69343022	+	Intron	SNP	T	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	88813071	88813071	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24171082	24171082	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	38787157	38787157	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	70671723	70671723	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	33870305	33870305	+	5'Flank	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	74827331	74827331	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142403846	142403846	+	Intron	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63204531	63204531	+	5'Flank	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	327671	327671	+	RNA	SNP	G	C	C			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	57390239	57390239	+	Intron	SNP	C	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	15220	15220	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	5614	5614	+	5'Flank	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17140495	17140495	+	Intron	SNP	G	T	T			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
