Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7657231	7657231	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7743159	7743159	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	9001437	9001437	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	9027056	9027056	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67150239	67150239	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107645539	107645539	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67031696	67031696	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87055958	87055958	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20739701	20739701	+	Silent	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20768100	20768100	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	21995517	21995517	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD3	5825	broad.mit.edu	37	1	94930189	94930189	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI2	10152	broad.mit.edu	37	2	204244895	204244895	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100569718	100569718	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADM	34	broad.mit.edu	37	1	76198497	76198497	+	Intron	DEL	G	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADSB	36	broad.mit.edu	37	10	124813334	124813334	+	3'UTR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAT1	38	broad.mit.edu	37	11	108014679	108014679	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN4	55515	broad.mit.edu	37	2	220396448	220396448	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACO2	50	broad.mit.edu	37	22	41904134	41904134	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT11	26027	broad.mit.edu	37	1	55076011	55076011	+	Intron	SNP	G	T	T	rs115202613	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM4	341392	broad.mit.edu	37	12	7474930	7474930	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR2A	92	broad.mit.edu	37	2	148675011	148675011	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR2B	93	broad.mit.edu	37	3	38519169	38519169	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207310091	207310091	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106188798	106188798	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106237339	106237339	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106714719	106714719	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106899039	106899039	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM9	8754	broad.mit.edu	37	8	38961034	38961034	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33643510	33643510	+	Silent	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43771453	43771453	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43837747	43837747	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43856834	43856834	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43896104	43896104	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178541052	178541052	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73171612	73171612	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73176824	73176824	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS4	9507	broad.mit.edu	37	1	161165508	161165508	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18718527	18718527	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK2	90956	broad.mit.edu	37	7	140386994	140386994	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167863252	167863252	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45753204	45753204	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7690869	7690869	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7766758	7766759	+	Intron	DNP	CT	AA	AA			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123066493	123066493	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49170886	49170886	+	Splice_Site	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADC	113451	broad.mit.edu	37	1	33583674	33583675	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111860432	111860432	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100205475	100205475	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AEN	64782	broad.mit.edu	37	15	89172334	89172334	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	88029500	88029500	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100628044	100628045	+	Intron	INS	-	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100632916	100632916	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86822822	86822822	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100346511	100346511	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247076680	247076680	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCYL2	23382	broad.mit.edu	37	7	129043137	129043137	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHRR	57491	broad.mit.edu	37	5	424015	424015	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIMP1	9255	broad.mit.edu	37	4	107246266	107246266	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK7	122481	broad.mit.edu	37	14	96864314	96864314	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP12	9590	broad.mit.edu	37	6	151627081	151627081	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134260952	134260952	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105271084	105271084	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58287358	58287358	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDOB	229	broad.mit.edu	37	9	104192380	104192380	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG10B	144245	broad.mit.edu	37	12	38710527	38710527	+	5'Flank	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG2	85365	broad.mit.edu	37	9	101980734	101980734	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG6	29929	broad.mit.edu	37	1	63871952	63871952	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALLC	55821	broad.mit.edu	37	2	3743511	3743511	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK3	57538	broad.mit.edu	37	15	85401881	85401881	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALX4	60529	broad.mit.edu	37	11	44286499	44286499	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMICA1	120425	broad.mit.edu	37	11	118081130	118081130	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD3	272	broad.mit.edu	37	11	10517225	10517225	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT1	284	broad.mit.edu	37	8	108334146	108334146	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114277466	114277466	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKH	56172	broad.mit.edu	37	5	14751355	14751355	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY2	57037	broad.mit.edu	37	7	16685083	16685084	+	Intron	INS	-	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95599402	95599402	+	RNA	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37451777	37451777	+	Splice_Site	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO1	55107	broad.mit.edu	37	11	70026039	70026039	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69351656	69351656	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANUBL1	93550	broad.mit.edu	37	10	46135494	46135494	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA11	311	broad.mit.edu	37	10	81921635	81921635	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA4	307	broad.mit.edu	37	2	70037653	70037653	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1B1	162	broad.mit.edu	37	22	29727422	29727422	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83333659	83333659	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4E1	23431	broad.mit.edu	37	15	51238016	51238016	+	Intron	SNP	T	C	C	rs17599981	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99056233	99056233	+	Splice_Site	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21232755	21232755	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21252355	21252355	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC3	345	broad.mit.edu	37	11	116703604	116703604	+	3'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOH	350	broad.mit.edu	37	17	64219805	64219805	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP4	361	broad.mit.edu	37	18	24436373	24436373	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35207119	35207119	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35240608	35240608	+	Intron	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP18	93663	broad.mit.edu	37	6	129901237	129901237	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP26	23092	broad.mit.edu	37	5	142587198	142587198	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP27	201176	broad.mit.edu	37	17	43481819	43481819	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130217403	130217403	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF12	23365	broad.mit.edu	37	11	120298716	120298716	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF7	8874	broad.mit.edu	37	13	111929871	111929871	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL6IP5	10550	broad.mit.edu	37	3	69150988	69150988	+	Splice_Site	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC5	79798	broad.mit.edu	37	16	31473873	31473873	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC4	91947	broad.mit.edu	37	15	98513325	98513325	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH2L	9070	broad.mit.edu	37	8	37986075	37986075	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62415837	62415837	+	3'UTR	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASRGL1	80150	broad.mit.edu	37	11	62124060	62124060	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177000129	177000129	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124358252	124358252	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG9A	79065	broad.mit.edu	37	2	220089069	220089069	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42474434	42474434	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42480469	42480469	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A4	50617	broad.mit.edu	37	7	138406664	138406664	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50223576	50223576	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117024783	117024783	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACH2	60468	broad.mit.edu	37	6	90641848	90641848	+	3'UTR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11047557	11047557	+	3'UTR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BATF	10538	broad.mit.edu	37	14	76012780	76012780	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCMO1	53630	broad.mit.edu	37	16	81272421	81272421	+	5'UTR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND4	389206	broad.mit.edu	37	4	42127507	42127507	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN2	51411	broad.mit.edu	37	12	51696509	51696509	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP7	655	broad.mit.edu	37	20	55746030	55746030	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34085793	34085793	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43279710	43279710	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRDT	676	broad.mit.edu	37	1	92443021	92443021	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRIP1	83990	broad.mit.edu	37	17	59885755	59885755	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK1	84446	broad.mit.edu	37	19	55800991	55800991	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108029180	108029180	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf118	55088	broad.mit.edu	37	10	115889611	115889611	+	Intron	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf122	387718	broad.mit.edu	37	10	127355501	127355501	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf96	374355	broad.mit.edu	37	10	118084663	118084663	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf96	374355	broad.mit.edu	37	10	118101667	118101667	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33566468	33566468	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33566572	33566572	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf29	91298	broad.mit.edu	37	12	88439689	88439689	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf41	54934	broad.mit.edu	37	12	49054302	49054302	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf4	57102	broad.mit.edu	37	12	4609339	4609339	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112696854	112696854	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf56	115749	broad.mit.edu	37	12	64746735	64746736	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf56	115749	broad.mit.edu	37	12	64746741	64746741	+	Silent	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf68	387856	broad.mit.edu	37	12	48578089	48578090	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf26	122046	broad.mit.edu	37	13	31543252	31543252	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf60	283677	broad.mit.edu	37	15	73766133	73766133	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf57	124989	broad.mit.edu	37	17	45405788	45405788	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf59	199675	broad.mit.edu	37	19	7743518	7743518	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf76	199800	broad.mit.edu	37	19	50193198	50193198	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF9B	387911	broad.mit.edu	37	13	24466139	24466139	+	Silent	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf110	339512	broad.mit.edu	37	1	162824630	162824630	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170916555	170916555	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55145133	55145134	+	Intron	DNP	GG	AA	AA			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf132	140699	broad.mit.edu	37	20	35796647	35796647	+	Splice_Site	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf191	149934	broad.mit.edu	37	20	26094534	26094534	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf71	128861	broad.mit.edu	37	20	31805231	31805231	+	5'UTR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf20	84077	broad.mit.edu	37	3	14744888	14744888	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf45	152940	broad.mit.edu	37	4	159928775	159928775	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5	727	broad.mit.edu	37	9	123782545	123782545	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf56	441108	broad.mit.edu	37	5	131822124	131822124	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165706821	165706821	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf221	154288	broad.mit.edu	37	6	74072832	74072832	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf222	389384	broad.mit.edu	37	6	36298583	36298583	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40488937	40488937	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89900852	89900852	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57378307	57378307	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf46	254778	broad.mit.edu	37	8	67404650	67404650	+	5'Flank	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf46	254778	broad.mit.edu	37	8	67404671	67404671	+	5'Flank	SNP	C	T	T	rs2718995		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf24	84688	broad.mit.edu	37	9	34380973	34380977	+	Frame_Shift_Del	DEL	CCGCG	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf5	23731	broad.mit.edu	37	9	111812963	111812963	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf68	55064	broad.mit.edu	37	9	4666136	4666136	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA2	760	broad.mit.edu	37	8	86393098	86393098	+	3'UTR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA6	765	broad.mit.edu	37	1	9034601	9034601	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA8	767	broad.mit.edu	37	8	61192387	61192387	+	Silent	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA9	768	broad.mit.edu	37	9	35679160	35679160	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140968156	140968156	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2566651	2566651	+	Intron	DEL	G	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2602666	2602666	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2763121	2763121	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181735776	181735776	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181767959	181767959	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49063215	49063215	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201034923	201034923	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81591439	81591439	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG5	27091	broad.mit.edu	37	17	64880682	64880682	+	Silent	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134576377	134576377	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPZB	832	broad.mit.edu	37	1	19683356	19683356	+	Intron	DEL	T	-	-	rs72294042		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2963022	2963022	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104905349	104905349	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN4	140689	broad.mit.edu	37	20	54573600	54573601	+	3'UTR	DEL	GA	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D2B	387707	broad.mit.edu	37	10	97779499	97779499	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBE1	147372	broad.mit.edu	37	18	57105361	57105361	+	Silent	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219888835	219888835	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219895648	219895648	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC115	84317	broad.mit.edu	37	2	131099692	131099692	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC144C	348254	broad.mit.edu	37	17	20280158	20280159	+	Intron	INS	-	GC	GC	rs139801618		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106124755	106124755	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106207385	106207385	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106207634	106207634	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC148	130940	broad.mit.edu	37	2	159214956	159214956	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC155	147872	broad.mit.edu	37	19	49902741	49902741	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC3	83643	broad.mit.edu	37	10	13100365	13100365	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC50	152137	broad.mit.edu	37	3	191098559	191098559	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32636280	32636280	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNA1	8900	broad.mit.edu	37	13	37014314	37014314	+	Silent	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT2	10576	broad.mit.edu	37	12	69995041	69995041	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7549080	7549080	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7649613	7649613	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158225836	158225836	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1L	344807	broad.mit.edu	37	3	112538721	112538721	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35836699	35836699	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD33	945	broad.mit.edu	37	19	51728683	51728683	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD33	945	broad.mit.edu	37	19	51742866	51742866	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD83	9308	broad.mit.edu	37	6	14118281	14118281	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC16	8881	broad.mit.edu	37	13	115002085	115002086	+	Intron	DNP	GG	TT	TT			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227452757	227452758	+	Intron	INS	-	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24593440	24593440	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22142763	22142763	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19591193	19591193	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19747347	19747347	+	Splice_Site	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH3	1001	broad.mit.edu	37	16	68721564	68721564	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85960424	85960424	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85972130	85972130	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK14	5218	broad.mit.edu	37	7	90546828	90546828	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK20	23552	broad.mit.edu	37	9	90584501	90584501	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2A	1029	broad.mit.edu	37	9	21971028	21971028	+	Missense_Mutation	SNP	C	G	G	rs121913389		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL2	124359	broad.mit.edu	37	16	80718706	80718706	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49031495	49031495	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117242094	117242094	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP250	11190	broad.mit.edu	37	20	34061295	34061295	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP97	79598	broad.mit.edu	37	3	101484051	101484051	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR4	10877	broad.mit.edu	37	1	196875873	196875873	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196711237	196711237	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB	1082	broad.mit.edu	37	19	49551813	49551813	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50870544	50870544	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD3	1107	broad.mit.edu	37	17	7810090	7810090	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61769079	61769079	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61769556	61769556	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21870330	21870330	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIC1	53344	broad.mit.edu	37	X	72797304	72797304	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	369898	369898	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB3	1142	broad.mit.edu	37	8	42586964	42586964	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP2	148113	broad.mit.edu	37	19	19655529	19655529	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP1	23332	broad.mit.edu	37	2	122217592	122217592	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86913141	86913141	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86921163	86921163	+	Silent	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC18B	497190	broad.mit.edu	37	16	74447481	74447481	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPB	81570	broad.mit.edu	37	11	72013472	72013472	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140123684	140123684	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140178166	140178166	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79027059	79027060	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57949037	57949037	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNNM1	26507	broad.mit.edu	37	10	101147648	101147648	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74418580	74418580	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3095550	3095550	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1189723	1189723	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125547512	125547512	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103354493	103354493	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103381314	103381314	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103461455	103461455	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32149523	32149523	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL18A1	80781	broad.mit.edu	37	21	46907463	46907463	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139611081	139611081	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139791742	139791742	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139838887	139838887	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL23A1	91522	broad.mit.edu	37	5	177694184	177694184	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86200557	86200557	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109790205	109790205	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	116967939	116967939	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189861230	189861230	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107938483	107938483	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189917015	189917015	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189922256	189922256	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238275930	238275930	+	Splice_Site	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130284367	130284367	+	Silent	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70981754	70981754	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC12	81035	broad.mit.edu	37	18	334908	334908	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX18	285521	broad.mit.edu	37	4	73930566	73930566	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130021888	130021888	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA4	51200	broad.mit.edu	37	7	129938451	129938451	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	129999468	129999468	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB3	22849	broad.mit.edu	37	10	93999766	93999766	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211542409	211542409	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPZ	8532	broad.mit.edu	37	4	8609222	8609222	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197404183	197404183	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHBP	1393	broad.mit.edu	37	5	76259322	76259322	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP3	10321	broad.mit.edu	37	6	49696695	49696695	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRNN	49860	broad.mit.edu	37	1	152382653	152382653	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16952970	16952970	+	RNA	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRP	1401	broad.mit.edu	37	1	159683224	159683224	+	3'UTR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGC	1420	broad.mit.edu	37	2	208993028	208993028	+	Missense_Mutation	SNP	G	A	A	rs141474796		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37322026	37322026	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2886896	2886896	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3000299	3000299	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34089982	34089982	+	Intron	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34192034	34192034	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113332281	113332281	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113349005	113349005	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114110998	114110998	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114291012	114291012	+	Intron	SNP	A	T	T	rs77721390		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPP1	79848	broad.mit.edu	37	8	68024266	68024266	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDSPL2	51496	broad.mit.edu	37	15	44751472	44751472	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTLA4	1493	broad.mit.edu	37	2	204732821	204732821	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80085085	80085085	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80390296	80390296	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80773089	80773089	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80782886	80782886	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSL3	392360	broad.mit.edu	37	9	90387838	90387838	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117432023	117432023	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUZD1	50624	broad.mit.edu	37	10	124600570	124600570	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXXC4	80319	broad.mit.edu	37	4	105412248	105412248	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYC1	1537	broad.mit.edu	37	8	145151544	145151544	+	Silent	SNP	C	T	T	rs143508925		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	16006249	16006249	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F8	11283	broad.mit.edu	37	19	15733011	15733011	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4X1	260293	broad.mit.edu	37	1	47433439	47433439	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57480689	57480689	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85416096	85416096	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAGLA	747	broad.mit.edu	37	11	61490787	61490787	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBT	1629	broad.mit.edu	37	1	100676651	100676651	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125299348	125299348	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L1	139425	broad.mit.edu	37	X	27997672	27997672	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50451836	50451836	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2	51473	broad.mit.edu	37	6	24353788	24353788	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1B	64858	broad.mit.edu	37	1	114449766	114449766	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCN	1634	broad.mit.edu	37	12	91550845	91550845	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX1	1653	broad.mit.edu	37	2	15744597	15744597	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKA	1606	broad.mit.edu	37	12	56335292	56335292	+	Splice_Site	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137150880	137150880	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137271839	137271839	+	Intron	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS4	10901	broad.mit.edu	37	14	24435112	24435112	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS9	10170	broad.mit.edu	37	2	169952148	169952148	+	Silent	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC1	116093	broad.mit.edu	37	2	189599310	189599310	+	3'UTR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISC1	27185	broad.mit.edu	37	1	232144741	232144742	+	Frame_Shift_Ins	INS	-	T	T	rs149500705	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38126915	38126915	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3978383	3978383	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124340177	124340177	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124378869	124378869	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32613934	32613934	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNA2	1763	broad.mit.edu	37	10	70210005	70210005	+	Splice_Site	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21604052	21604052	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21908331	21908331	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52422303	52422303	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11837392	11837392	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11845782	11845782	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI1	27019	broad.mit.edu	37	9	34506861	34506861	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186299931	186299931	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132180075	132180075	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE2B	58511	broad.mit.edu	37	1	84877941	84877941	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNHD1	144132	broad.mit.edu	37	11	6588722	6588722	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM3	26052	broad.mit.edu	37	1	172277816	172277816	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225658116	225658116	+	Splice_Site	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	128823080	128823080	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111480998	111480998	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116447548	116447548	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116534723	116534723	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	98012096	98012096	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27154704	27154704	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105441629	105441629	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRAP1	10589	broad.mit.edu	37	11	65688800	65688801	+	Splice_Site	INS	-	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD2	1813	broad.mit.edu	37	11	113286152	113286152	+	Silent	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56484657	56484657	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTD1	92675	broad.mit.edu	37	20	18576585	18576585	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNBP1	84062	broad.mit.edu	37	6	15615574	15615574	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207564817	207564817	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96242490	96242490	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108347820	108347820	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108392862	108392862	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECM1	1893	broad.mit.edu	37	1	150480792	150480792	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFEMP1	2202	broad.mit.edu	37	2	56149454	56149454	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHB	151651	broad.mit.edu	37	3	19962097	19962097	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFNA1	1942	broad.mit.edu	37	1	155103906	155103906	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42934454	42934454	+	Frame_Shift_Del	DEL	C	-	-	rs141842808		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGR2	1959	broad.mit.edu	37	10	64574403	64574403	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHD3	30845	broad.mit.edu	37	2	31489433	31489433	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK3	9451	broad.mit.edu	37	2	88857244	88857244	+	3'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3F	8665	broad.mit.edu	37	11	8008799	8008799	+	5'Flank	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELP4	26610	broad.mit.edu	37	11	31669355	31669355	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71508496	71508496	+	Silent	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71509106	71509106	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111463760	111463760	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP7	339221	broad.mit.edu	37	17	77708995	77708995	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5443994	5443994	+	Intron	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38186072	38186072	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38227077	38227077	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89499497	89499497	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66230964	66230964	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97202786	97202786	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB4	2050	broad.mit.edu	37	7	100410563	100410563	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB4	2050	broad.mit.edu	37	7	100410850	100410850	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX2	2053	broad.mit.edu	37	8	27396324	27396324	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212251660	212251660	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212569970	212569970	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212578255	212578255	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERGIC1	57222	broad.mit.edu	37	5	172315590	172315590	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA2	2139	broad.mit.edu	37	20	45607322	45607322	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP12	646486	broad.mit.edu	37	8	82441843	82441843	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM108B1	51104	broad.mit.edu	37	9	74489794	74489794	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A2	10827	broad.mit.edu	37	5	153372505	153372505	+	3'UTR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131520302	131520302	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM134A	79137	broad.mit.edu	37	2	220045408	220045408	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A1	407738	broad.mit.edu	37	3	68194165	68194165	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62273785	62273785	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75C1	441452	broad.mit.edu	37	9	90534313	90534313	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM76A	199870	broad.mit.edu	37	1	28075744	28075744	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166039812	166039812	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166039814	166039814	+	Silent	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166135239	166135239	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCG	2189	broad.mit.edu	37	9	35074871	35074871	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187525440	187525440	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92085726	92085726	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127697409	127697409	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8191736	8191736	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL17	64839	broad.mit.edu	37	5	107356476	107356476	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928208	15928208	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928628	15928628	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15936728	15936728	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO21	23014	broad.mit.edu	37	12	117603329	117603329	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO42	54455	broad.mit.edu	37	1	16582157	16582157	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1A	2205	broad.mit.edu	37	1	159273776	159273776	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40430352	40430352	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR3A	2214	broad.mit.edu	37	1	161514551	161514551	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157738039	157738039	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157653173	157653173	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157508858	157508858	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRLA	84824	broad.mit.edu	37	1	161680434	161680434	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125351577	125351577	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGB	2244	broad.mit.edu	37	4	155488680	155488680	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIBIN	387758	broad.mit.edu	37	11	27016640	27016640	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128488844	128488844	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28903678	28903678	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180030287	180030287	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240307582	240307582	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL2	114793	broad.mit.edu	37	2	153475439	153475439	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO3	2328	broad.mit.edu	37	1	171077373	171077373	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO4	2329	broad.mit.edu	37	1	171293161	171293161	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216262661	216262661	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159653426	159653426	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159653965	159653965	+	Silent	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49197410	49197410	+	Splice_Site	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXD3	27022	broad.mit.edu	37	1	63789370	63789370	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXO1	2308	broad.mit.edu	37	13	41194334	41194334	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114329697	114329697	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR1	2357	broad.mit.edu	37	19	52249355	52249355	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR1	2357	broad.mit.edu	37	19	52250065	52250065	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79360078	79360078	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14863852	14863852	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13804512	13804512	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD2	143162	broad.mit.edu	37	10	49414763	49414763	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRRS1	391059	broad.mit.edu	37	1	100174709	100174709	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48549688	48549688	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48566015	48566015	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49191225	49191225	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162306823	162306823	+	3'UTR	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162307254	162307254	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD10	11211	broad.mit.edu	37	12	130648337	130648337	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101369240	101369240	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27182421	27182421	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151130863	151130863	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151130864	151130864	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27271973	27271973	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27586350	27586350	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRP	2568	broad.mit.edu	37	5	170224677	170224677	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155265578	155265578	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT8	26290	broad.mit.edu	37	12	4872286	4872286	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173269703	173269703	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2	2620	broad.mit.edu	37	11	22707433	22707433	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153792213	153792213	+	Splice_Site	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89664258	89664258	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCG	2641	broad.mit.edu	37	2	163004135	163004135	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44198579	44198579	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120580251	120580251	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM1	85476	broad.mit.edu	37	3	158378867	158378867	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA2	2675	broad.mit.edu	37	8	21562572	21562572	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55223618	55223618	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIF	2694	broad.mit.edu	37	11	59610454	59610454	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT2	9815	broad.mit.edu	37	12	110390203	110390203	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42079691	42079691	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS1	148979	broad.mit.edu	37	1	54060342	54060342	+	Silent	SNP	G	A	A	rs146521882	byFrequency;by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14548187	14548187	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA3	8001	broad.mit.edu	37	4	175710011	175710011	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GML	2765	broad.mit.edu	37	8	143922666	143922666	+	Intron	SNP	C	G	G	rs77596800	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAO1	2775	broad.mit.edu	37	16	56374607	56374607	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL2	29889	broad.mit.edu	37	1	38056250	38056250	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA1	2800	broad.mit.edu	37	9	127660732	127660732	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20331665	20331665	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP5	2814	broad.mit.edu	37	3	194117584	194117584	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167023838	167023838	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167024137	167024137	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176594958	176594958	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR113	165082	broad.mit.edu	37	2	26535815	26535815	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB10	2887	broad.mit.edu	37	7	50682328	50682328	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11760985	11760985	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105775854	105775854	+	Intron	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87676108	87676108	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	93511233	93511233	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102134218	102134218	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13716876	13716876	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13720017	13720017	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK4	2868	broad.mit.edu	37	4	3029749	3029749	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34003901	34003901	+	Silent	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMC	56169	broad.mit.edu	37	8	130763637	130763637	+	Intron	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27802831	27802832	+	Intron	DNP	CC	AA	AA			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA1	2938	broad.mit.edu	37	6	52671319	52671319	+	5'Flank	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM1	2944	broad.mit.edu	37	1	110235905	110235905	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM2P1	442245	broad.mit.edu	37	6	111368018	111368018	+	3'UTR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657526	72657526	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP3	84705	broad.mit.edu	37	19	17449507	17449507	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPC	2995	broad.mit.edu	37	2	127447808	127447808	+	Intron	SNP	A	G	G	rs55863428		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPE	2996	broad.mit.edu	37	4	144797822	144797822	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H2AFY	9555	broad.mit.edu	37	5	134705081	134705081	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H3F3C	440093	broad.mit.edu	37	12	31945049	31945049	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN2	610	broad.mit.edu	37	19	613921	613921	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236718363	236718363	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5A	25938	broad.mit.edu	37	14	31856408	31856408	+	Silent	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93271858	93271858	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43400571	43400571	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43580968	43580968	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELT	391723	broad.mit.edu	37	4	185941733	185941733	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM	220296	broad.mit.edu	37	11	124794879	124794879	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65418949	65418949	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28412878	28412878	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGSNAT	138050	broad.mit.edu	37	8	43048900	43048900	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIPK2	28996	broad.mit.edu	37	7	139285162	139285162	+	Splice_Site	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3H	8357	broad.mit.edu	37	6	27776115	27776115	+	5'Flank	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176316514	176316514	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-F	3134	broad.mit.edu	37	6	29693107	29693107	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186082979	186082979	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186114646	186114646	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPU	3192	broad.mit.edu	37	1	245019447	245019447	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK3	84376	broad.mit.edu	37	8	42814285	42814285	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA9	3205	broad.mit.edu	37	7	27204712	27204712	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPN	3249	broad.mit.edu	37	19	35556769	35556769	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100481592	100481592	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH2	3274	broad.mit.edu	37	5	175111114	175111114	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152188371	152188371	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26147693	26147693	+	3'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B12	51144	broad.mit.edu	37	11	43837096	43837096	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPH1	10808	broad.mit.edu	37	13	31722725	31722725	+	Intron	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTA	283902	broad.mit.edu	37	16	73126673	73126673	+	RNA	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63257024	63257024	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3D	200909	broad.mit.edu	37	3	183754201	183754201	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR7	3363	broad.mit.edu	37	10	92503222	92503222	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53615428	53615428	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71025330	71025330	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IBSP	3381	broad.mit.edu	37	4	88732021	88732021	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDE	3416	broad.mit.edu	37	10	94297170	94297170	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFITM3	10410	broad.mit.edu	37	11	320759	320760	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFLTD1	160492	broad.mit.edu	37	12	25679917	25679917	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA17	3451	broad.mit.edu	37	9	21227931	21227931	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA21	3452	broad.mit.edu	37	9	21166424	21166424	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1	3479	broad.mit.edu	37	12	102813362	102813362	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47114660	47114660	+	Intron	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118648810	118648810	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130415341	130415341	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130626766	130626766	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF1	10320	broad.mit.edu	37	7	50455158	50455158	+	Silent	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F8	27177	broad.mit.edu	37	2	113783954	113783954	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	105011010	105011010	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31RA	133396	broad.mit.edu	37	5	55204169	55204169	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3143539	3143539	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35876062	35876062	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166896262	166896262	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMP5	162540	broad.mit.edu	37	17	43922651	43922651	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76744520	76744520	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62550351	62550351	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INA	9118	broad.mit.edu	37	10	105037801	105037801	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5K	51763	broad.mit.edu	37	17	1416816	1416816	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15197263	15197263	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15247160	15247160	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS3	65123	broad.mit.edu	37	1	153721289	153721289	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS3	65123	broad.mit.edu	37	1	153735138	153735138	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCA1	79781	broad.mit.edu	37	2	237253141	237253141	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCF1	132141	broad.mit.edu	37	3	51937288	51937288	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC3	440073	broad.mit.edu	37	12	271198	271198	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK4	51135	broad.mit.edu	37	12	44176250	44176250	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX2	153572	broad.mit.edu	37	5	2749051	2749051	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISG15	9636	broad.mit.edu	37	1	949541	949541	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68620556	68620556	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68661404	68661404	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182344885	182344885	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA7	3679	broad.mit.edu	37	12	56088339	56088339	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31374128	31374128	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7786038	7786039	+	Intron	DNP	CC	AG	AG			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54780164	54780164	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54784971	54784971	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4775016	4775016	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAG2	3714	broad.mit.edu	37	14	105618437	105618437	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6083476	6083476	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147019347	147019347	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAZF1	221895	broad.mit.edu	37	7	28031461	28031461	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAL1	3730	broad.mit.edu	37	X	8565262	8565262	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124113928	124113928	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAZALD1	81621	broad.mit.edu	37	10	102823922	102823922	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150654416	150654416	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155555929	155555929	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78870177	78870178	+	Intron	DNP	CG	TC	TC			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN2	3781	broad.mit.edu	37	5	113828922	113828922	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ3	3786	broad.mit.edu	37	8	133141908	133141908	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73765369	73765369	+	Intron	DEL	G	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73902341	73902341	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196367928	196367928	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD19	146212	broad.mit.edu	37	16	67328628	67328628	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319	9856	broad.mit.edu	37	6	24601348	24601348	+	5'UTR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8829043	8829043	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57181702	57181702	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57189711	57189711	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1244	57221	broad.mit.edu	37	6	138638516	138638516	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72339179	72339179	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3C	3797	broad.mit.edu	37	2	26203619	26203619	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39513461	39513461	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	169951180	169951180	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55359273	55359273	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158064669	158064669	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIT	3815	broad.mit.edu	37	4	55564616	55564616	+	Silent	SNP	G	T	T	rs140469176	byFrequency	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70469366	70469366	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL21	9903	broad.mit.edu	37	1	6653705	6653705	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL2	11275	broad.mit.edu	37	4	166226722	166226722	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86880740	86880740	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK13	26085	broad.mit.edu	37	19	51561694	51561694	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KL	9365	broad.mit.edu	37	13	33638051	33638051	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	134997351	134997351	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135014889	135014889	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT26	353288	broad.mit.edu	37	17	38926662	38926662	+	Splice_Site	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT39	390792	broad.mit.edu	37	17	39119845	39119845	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT71	112802	broad.mit.edu	37	12	52938287	52938287	+	3'UTR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT73	319101	broad.mit.edu	37	12	53008470	53008470	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT78	196374	broad.mit.edu	37	12	53237873	53237873	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT79	338785	broad.mit.edu	37	12	53217100	53217100	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-4	386672	broad.mit.edu	37	21	45994767	45994767	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7002232	7002232	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129637366	129637366	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS3	204219	broad.mit.edu	37	15	100942990	100942990	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS3	204219	broad.mit.edu	37	15	101016465	101016465	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBX1	10660	broad.mit.edu	37	10	102987397	102987397	+	Missense_Mutation	SNP	G	A	A	rs137946176	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1F	353137	broad.mit.edu	37	1	152748828	152748828	+	5'Flank	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2B	26239	broad.mit.edu	37	1	152659594	152659594	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN1	3933	broad.mit.edu	37	9	138413881	138413881	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN1	3933	broad.mit.edu	37	9	138416980	138416980	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136564838	136564838	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136566553	136566553	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB1	8861	broad.mit.edu	37	10	103869341	103869341	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEFTY1	10637	broad.mit.edu	37	1	226108984	226108984	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48916015	48916015	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48916070	48916070	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL4	375323	broad.mit.edu	37	3	9547772	9547772	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX6	26468	broad.mit.edu	37	9	124971874	124971874	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75626681	75626681	+	3'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55086954	55086954	+	Missense_Mutation	SNP	A	G	G	rs141927155	byFrequency	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA6	79168	broad.mit.edu	37	19	54744828	54744828	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54779944	54779944	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMA1	51474	broad.mit.edu	37	12	50589728	50589728	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN7A	8825	broad.mit.edu	37	12	81283099	81283099	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPN	643418	broad.mit.edu	37	10	90528676	90528676	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1	3998	broad.mit.edu	37	18	57022703	57022703	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO2	4005	broad.mit.edu	37	11	33886287	33886287	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100272228	100272228	broad.mit.edu	37	X	149283194	149283194	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285501	285501	broad.mit.edu	37	4	178896974	178896974	+	RNA	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC374443	374443	broad.mit.edu	37	12	9795276	9795276	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC400794	400794	broad.mit.edu	37	1	165551611	165551611	+	5'Flank	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC441601	441601	broad.mit.edu	37	11	50254459	50254459	+	RNA	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC642846	642846	broad.mit.edu	37	12	9446507	9446507	+	Splice_Site	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645332	645332	broad.mit.edu	37	11	67565297	67565297	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646813	646813	broad.mit.edu	37	11	50375351	50375351	+	RNA	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC648740	648740	broad.mit.edu	37	1	104113333	104113333	+	5'UTR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650623	650623	broad.mit.edu	37	10	81444193	81444193	+	RNA	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22453430	22453430	+	RNA	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22663026	22663026	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22786564	22786564	+	RNA	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23063288	23063288	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAR3	23566	broad.mit.edu	37	1	85331113	85331113	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160999597	160999597	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161043470	161043470	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	81893259	81893259	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62679654	62679654	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH2	57631	broad.mit.edu	37	X	114357578	114357579	+	Intron	DNP	CC	AT	AT			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141091871	141091871	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141214071	141214071	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141294000	141294001	+	Intron	DNP	AA	TT	TT			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57579108	57579108	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170044753	170044753	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC30	339291	broad.mit.edu	37	18	7231199	7231199	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70488962	70488962	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70573515	70573515	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRFIP1	9208	broad.mit.edu	37	2	238683108	238683108	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101605576	101605576	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN3	54674	broad.mit.edu	37	7	110763583	110763583	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115560673	115560673	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYN	4067	broad.mit.edu	37	8	56879473	56879473	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39838291	39838291	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED2	10916	broad.mit.edu	37	X	54839579	54839579	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78116343	78116343	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21201656	21201656	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21205487	21205487	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21208440	21208440	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K5	5607	broad.mit.edu	37	15	67920253	67920253	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K4	4216	broad.mit.edu	37	6	161518108	161518108	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D3	79649	broad.mit.edu	37	X	135309417	135309417	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK4	5596	broad.mit.edu	37	18	48248352	48248352	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKBP1	23005	broad.mit.edu	37	15	42110568	42110568	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPT	4137	broad.mit.edu	37	17	44049296	44049296	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165110742	165110742	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165111022	165111022	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220752761	220752761	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK2	2011	broad.mit.edu	37	11	63667318	63667318	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST1	22983	broad.mit.edu	37	19	12951786	12951786	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBL2	4153	broad.mit.edu	37	10	54531399	54531399	+	5'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC5R	4161	broad.mit.edu	37	18	13825938	13825938	+	Silent	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47315098	47315098	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED15	51586	broad.mit.edu	37	22	20929281	20929281	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131908654	131908654	+	3'UTR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEFV	4210	broad.mit.edu	37	16	3298801	3298801	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37187109	37187109	+	Intron	DEL	C	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEPE	56955	broad.mit.edu	37	4	88766209	88766209	+	Silent	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP5	8076	broad.mit.edu	37	12	8804427	8804427	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFI2	4241	broad.mit.edu	37	3	196743162	196743162	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5B	146664	broad.mit.edu	37	17	74928824	74928824	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42042457	42042457	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42059364	42059364	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA2	117153	broad.mit.edu	37	14	39721909	39721909	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18301379	18301379	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIOS	54468	broad.mit.edu	37	7	7613335	7613335	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1302-7	100302147	broad.mit.edu	37	8	142867736	142867736	+	5'Flank	DEL	C	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1323	100302255	broad.mit.edu	37	19	54172602	54172602	+	5'Flank	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR520B	574473	broad.mit.edu	37	19	54204378	54204378	+	5'Flank	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129910519	129910519	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMADHC	27249	broad.mit.edu	37	2	150427727	150427727	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMADHC	27249	broad.mit.edu	37	2	150436250	150436250	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2528162	2528162	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154834707	154834707	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154858048	154858048	+	Silent	SNP	C	A	A	rs150252105		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSC1	64757	broad.mit.edu	37	1	220964776	220964776	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSC1	64757	broad.mit.edu	37	1	220971112	220971112	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50598186	50598186	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10	4343	broad.mit.edu	37	1	113243192	113243192	+	3'UTR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30432920	30432920	+	3'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30435664	30435664	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MR1	3140	broad.mit.edu	37	1	181024400	181024400	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX1	259249	broad.mit.edu	37	11	18956007	18956007	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS15	64960	broad.mit.edu	37	1	36921630	36921630	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS27	23107	broad.mit.edu	37	5	71591425	71591425	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60229821	60229821	+	5'UTR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A2	2206	broad.mit.edu	37	11	59860173	59860173	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121475863	121475863	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151256475	151256475	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151358163	151358164	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30656663	30656663	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30656684	30656684	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30657796	30657796	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30657950	30657950	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30658272	30658272	+	5'UTR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30658300	30658300	+	5'UTR	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30658337	30658337	+	5'UTR	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100532536	100532536	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC15	143662	broad.mit.edu	37	11	26587269	26587269	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100684927	100684927	+	Silent	SNP	G	T	T	rs142563202		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC4	4585	broad.mit.edu	37	3	195516952	195516952	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1251244	1251244	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUTYH	4595	broad.mit.edu	37	1	45799069	45799069	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBBP1A	10514	broad.mit.edu	37	17	4443251	4443251	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL2	4605	broad.mit.edu	37	20	42333762	42333762	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPHL	343263	broad.mit.edu	37	1	109840013	109840014	+	Intron	INS	-	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10400556	10400556	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10411835	10411835	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10415822	10415822	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10304031	10304031	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10304093	10304093	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL3	4634	broad.mit.edu	37	3	46900951	46900951	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK3	91807	broad.mit.edu	37	16	46763106	46763106	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123385993	123385993	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109496698	109496698	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26239583	26239583	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171056660	171056660	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171256678	171256678	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95132788	95132788	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69959219	69959219	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N6AMT1	29104	broad.mit.edu	37	21	30248748	30248748	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA35	60560	broad.mit.edu	37	9	88611371	88611371	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101797419	101797419	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L2	4674	broad.mit.edu	37	X	72433167	72433167	+	Missense_Mutation	SNP	C	A	A	rs146885760	byFrequency	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARFL	64428	broad.mit.edu	37	16	786372	786372	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT10	55226	broad.mit.edu	37	11	34140113	34140113	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78604030	78604030	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH	23397	broad.mit.edu	37	2	97007830	97007830	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133531573	133531573	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133541460	133541460	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133626453	133626453	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115792181	115792181	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21076311	21076311	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFH	4744	broad.mit.edu	37	22	29884811	29884811	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFM	4741	broad.mit.edu	37	8	24775961	24775961	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEGR1	257194	broad.mit.edu	37	1	72204026	72204026	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170384639	170384639	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170482535	170482535	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20869316	20869316	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70451089	70451089	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70534577	70534577	+	5'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29562685	29562685	+	Silent	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29679455	29679455	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204926961	204926961	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC1	150159	broad.mit.edu	37	4	103822408	103822408	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	36958221	36958221	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54310875	54310875	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54327144	54327144	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55501456	55501456	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR2	56923	broad.mit.edu	37	5	151777826	151777826	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO1	23420	broad.mit.edu	37	16	14956769	14956769	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP2	4839	broad.mit.edu	37	12	6675721	6675721	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117672273	117672273	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117728305	117728305	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34204551	34204551	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS2	7827	broad.mit.edu	37	1	179534020	179534020	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153658399	153658399	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR4A3	8013	broad.mit.edu	37	9	102625881	102625881	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A1	2516	broad.mit.edu	37	9	127262395	127262395	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200017555	200017555	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115364796	115364796	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	A	A	rs11554290		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84733393	84733393	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206614562	206614562	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64458034	64458034	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64460139	64460139	+	Intron	DEL	C	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79111534	79111534	+	5'UTR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSA2	10412	broad.mit.edu	37	5	74064821	74064821	+	Silent	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF3	4908	broad.mit.edu	37	12	5603537	5603537	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87636068	87636068	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88679009	88679009	+	Intron	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT21	11051	broad.mit.edu	37	16	56468719	56468719	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT7	283927	broad.mit.edu	37	16	77759333	77759333	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP133	55746	broad.mit.edu	37	1	229611466	229611466	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	154115987	154115987	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP35	129401	broad.mit.edu	37	2	183989104	183989104	+	5'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP85	79902	broad.mit.edu	37	17	73229200	73229200	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NVL	4931	broad.mit.edu	37	1	224424332	224424332	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24878499	24878499	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228491451	228491451	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228529173	228529173	+	Silent	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28171559	28171559	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28326894	28326894	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF2L	57489	broad.mit.edu	37	1	86848120	86848120	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78437095	78437095	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78437102	78437102	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50946008	50946008	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN4	94233	broad.mit.edu	37	10	88425548	88425549	+	3'UTR	INS	-	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPTC	26254	broad.mit.edu	37	1	203467929	203467929	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A3	26496	broad.mit.edu	37	11	7960420	7960420	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10C1	442194	broad.mit.edu	37	6	29408205	29408205	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR12D3	81797	broad.mit.edu	37	6	29342471	29342471	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1B1	347169	broad.mit.edu	37	9	125391866	125391866	+	5'Flank	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG1	144125	broad.mit.edu	37	11	6807165	6807165	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B11	127623	broad.mit.edu	37	1	247615377	247615377	+	5'Flank	DEL	T	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2D3	120775	broad.mit.edu	37	11	6942890	6942890	+	Missense_Mutation	SNP	G	T	T	rs138058537		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248246880	248246880	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248202547	248202547	+	3'UTR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M7	391196	broad.mit.edu	37	1	248488059	248488059	+	5'Flank	SNP	G	T	T	rs142573696	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525566	248525566	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T8	343172	broad.mit.edu	37	1	248085210	248085210	+	Silent	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4B1	119765	broad.mit.edu	37	11	48239130	48239130	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D2	124538	broad.mit.edu	37	17	56246951	56246951	+	5'Flank	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22382625	22382625	+	Silent	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51A7	119687	broad.mit.edu	37	11	4929316	4929316	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B2	79345	broad.mit.edu	37	11	5345286	5345286	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E2	119678	broad.mit.edu	37	11	5080628	5080628	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E2	119678	broad.mit.edu	37	11	5080731	5080731	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D13	390142	broad.mit.edu	37	11	55541757	55541757	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563767	55563767	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5J2	282775	broad.mit.edu	37	11	55944951	55944951	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6T1	219874	broad.mit.edu	37	11	123814197	123814197	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55873446	55873446	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9A4	130075	broad.mit.edu	37	7	141619136	141619136	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9A4	130075	broad.mit.edu	37	7	141619404	141619404	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9K2	441639	broad.mit.edu	37	12	55523872	55523872	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSGIN2	734	broad.mit.edu	37	8	90926624	90926624	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21696488	21696488	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26686711	26686711	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP2	92736	broad.mit.edu	37	17	72929412	72929412	+	Intron	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX2	22953	broad.mit.edu	37	12	133197069	133197069	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX3	5024	broad.mit.edu	37	11	57114061	57114061	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX5	5026	broad.mit.edu	37	17	3592997	3592997	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY10	27334	broad.mit.edu	37	X	78216603	78216603	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAAF1	80227	broad.mit.edu	37	11	73611202	73611202	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17570749	17570749	+	3'UTR	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAEP	5047	broad.mit.edu	37	9	138457240	138457240	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE3	139793	broad.mit.edu	37	X	55290291	55290291	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE3	139793	broad.mit.edu	37	X	55290311	55290311	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110366488	110366488	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176564440	176564440	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226576616	226576616	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150828258	150828258	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX7	5081	broad.mit.edu	37	1	19029763	19029763	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55945097	55945097	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56287656	56287656	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138442481	138442481	+	Missense_Mutation	SNP	C	G	G	rs111581489		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHAC2	56134	broad.mit.edu	37	5	140346736	140346736	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHAC2	56134	broad.mit.edu	37	5	140389308	140389308	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB16	57717	broad.mit.edu	37	5	140562614	140562614	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA12	26025	broad.mit.edu	37	5	140811650	140811650	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB2	56103	broad.mit.edu	37	5	140740127	140740127	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT1B	9468	broad.mit.edu	37	X	24580619	24580619	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105199724	105199724	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31918701	31918701	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20523017	20523017	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95388934	95388934	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55144722	55144722	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRB	5159	broad.mit.edu	37	5	149514398	149514398	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA6	10130	broad.mit.edu	37	2	10952898	10952898	+	5'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM1	9124	broad.mit.edu	37	10	96997737	96997737	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD7	79955	broad.mit.edu	37	10	102783371	102783371	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57326475	57326475	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57327680	57327680	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGA5	5222	broad.mit.edu	37	11	61018486	61018486	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100996909	100996909	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI16	221476	broad.mit.edu	37	6	36929369	36929369	+	Intron	DEL	G	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIBF1	10464	broad.mit.edu	37	13	73369757	73369757	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGO	84720	broad.mit.edu	37	9	35091867	35091867	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18544317	18544317	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1B	8395	broad.mit.edu	37	9	71439190	71439190	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110457398	110457398	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51503850	51503850	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN2	5586	broad.mit.edu	37	1	89273071	89273071	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4D	283748	broad.mit.edu	37	15	42373551	42373551	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G7	7941	broad.mit.edu	37	6	46682037	46682037	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160840536	160840536	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160884885	160884885	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAA	9373	broad.mit.edu	37	9	26919280	26919280	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAA	9373	broad.mit.edu	37	9	26919282	26919282	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9368227	9368227	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4B	153478	broad.mit.edu	37	5	171273	171273	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH1	57475	broad.mit.edu	37	14	68040019	68040019	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK1	5347	broad.mit.edu	37	16	23692141	23692141	+	Intron	SNP	C	G	G	rs429894		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLVAP	83483	broad.mit.edu	37	19	17471480	17471480	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLDC1	154197	broad.mit.edu	37	6	160229982	160229982	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP1	5407	broad.mit.edu	37	10	118364739	118364739	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118187538	118187539	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118231514	118231514	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79781775	79781775	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130869654	130869654	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19553613	19553613	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19553955	19553955	+	Intron	DEL	G	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19566124	19566124	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16287387	16287387	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU4F2	5458	broad.mit.edu	37	4	147561868	147561868	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAPDC1A	196051	broad.mit.edu	37	10	122334623	122334623	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARG	5468	broad.mit.edu	37	3	12422846	12422846	+	Silent	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAT	5471	broad.mit.edu	37	4	57272855	57272855	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76805935	76805935	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPHLN1	51535	broad.mit.edu	37	12	42681378	42681378	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL4	85313	broad.mit.edu	37	6	149838586	149838586	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1D	8493	broad.mit.edu	37	17	58711293	58711293	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160783243	160783243	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM15	63977	broad.mit.edu	37	21	43222973	43222974	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM5	11107	broad.mit.edu	37	4	121675709	121675709	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23510202	23510202	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47317579	47317579	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69009408	69009408	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186273331	186273331	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCE	5581	broad.mit.edu	37	2	46234816	46234816	+	Intron	SNP	G	T	T	rs78613186	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT2	3275	broad.mit.edu	37	21	48080601	48080601	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF31	26121	broad.mit.edu	37	19	54628052	54628052	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS21	10942	broad.mit.edu	37	16	2868654	2868654	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS48	345062	broad.mit.edu	37	4	152198464	152198464	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10390482	10390482	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD	5662	broad.mit.edu	37	10	104174492	104174492	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43709715	43709715	+	5'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43448231	43448231	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43305345	43305345	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSIP1	11168	broad.mit.edu	37	9	15469918	15469918	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD11	5717	broad.mit.edu	37	17	30773989	30773989	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTF1A	256297	broad.mit.edu	37	10	23482479	23482479	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTF1A	256297	broad.mit.edu	37	10	23482715	23482715	+	Silent	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTF1A	256297	broad.mit.edu	37	10	23482796	23482796	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71331181	71331181	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2	5747	broad.mit.edu	37	8	141874421	141874421	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN11	5781	broad.mit.edu	37	12	112926888	112926888	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8713369	8713369	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8713385	8713385	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41101012	41101012	+	Silent	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29585919	29585919	+	Intron	DEL	G	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29616186	29616186	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121568037	121568037	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRIG	79037	broad.mit.edu	37	7	99817833	99817833	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52320726	52320726	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52359499	52359499	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGM	5837	broad.mit.edu	37	11	64522366	64522366	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9312481	9312481	+	Intron	SNP	A	G	G	rs143303368	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9318489	9318489	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9318630	9318630	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSOX1	5768	broad.mit.edu	37	1	180144454	180144454	+	Splice_Site	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB4A	5867	broad.mit.edu	37	1	229422233	229422233	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI1	10743	broad.mit.edu	37	17	17699559	17699559	+	Silent	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37179585	37179585	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGDS	5900	broad.mit.edu	37	9	135979811	135979811	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114781672	114781672	+	Splice_Site	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASL10B	91608	broad.mit.edu	37	17	34068139	34068139	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP4	5928	broad.mit.edu	37	1	33135115	33135115	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBL1	5933	broad.mit.edu	37	20	35668595	35668595	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM46	166863	broad.mit.edu	37	4	155720407	155720407	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH16	8608	broad.mit.edu	37	12	57345794	57345794	+	3'UTR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79363894	79363894	+	RNA	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79384250	79384250	+	3'UTR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385439	79385439	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETNLB	84666	broad.mit.edu	37	3	108475248	108475248	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD1	400966	broad.mit.edu	37	2	87201181	87201181	+	Intron	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240934014	240934014	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240986472	240986472	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49580258	49580258	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHO	6010	broad.mit.edu	37	3	129251465	129251465	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICH2	9912	broad.mit.edu	37	17	12859271	12859271	+	Silent	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS4	140730	broad.mit.edu	37	20	43384785	43384786	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE2	6036	broad.mit.edu	37	14	21387588	21387588	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31526249	31526249	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25444721	25444721	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF212	285498	broad.mit.edu	37	4	1066622	1066622	+	3'UTR	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55541305	55541305	+	Silent	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH1	89765	broad.mit.edu	37	21	43912951	43912952	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTP2	344892	broad.mit.edu	37	3	187416470	187416470	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	179025801	179025801	+	Silent	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93026806	93026807	+	Splice_Site	DNP	CC	GA	GA			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUSC1	23623	broad.mit.edu	37	1	155296443	155296443	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165386247	165386247	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYBP	23429	broad.mit.edu	37	3	72427979	72427979	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237620166	237620166	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237774158	237774158	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237789116	237789116	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237886536	237886536	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237951316	237951316	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134987455	134987455	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134989101	134989101	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD14	201191	broad.mit.edu	37	17	48193422	48193422	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP30BP	29115	broad.mit.edu	37	17	73695769	73695769	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200233472	200233472	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38766852	38766852	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38768368	38768368	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38768370	38768370	+	Silent	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166187921	166187921	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	166003580	166003580	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4B	6330	broad.mit.edu	37	11	118012062	118012062	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167321928	167321928	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1G	6340	broad.mit.edu	37	16	23223619	23223619	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50207006	50207006	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHAP3	728609	broad.mit.edu	37	5	1572340	1572340	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHB	6390	broad.mit.edu	37	1	17345539	17345559	+	Intron	DEL	AGCTGGTTCAGTGTCCAAGCA	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	3658732	3658732	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4091270	4091270	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24B	10427	broad.mit.edu	37	4	110383995	110383995	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31A	22872	broad.mit.edu	37	4	83788320	83788320	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L	6400	broad.mit.edu	37	14	81952897	81952897	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169586107	169586107	+	Intron	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48060698	48060698	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48062529	48062529	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55878825	55878825	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA12	145264	broad.mit.edu	37	14	94956263	94956263	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB11	89778	broad.mit.edu	37	18	61387166	61387166	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE1	5054	broad.mit.edu	37	7	100771627	100771627	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI1	5274	broad.mit.edu	37	3	167512697	167512697	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD3	84193	broad.mit.edu	37	14	99929778	99929778	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37410517	37410517	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRP1	6422	broad.mit.edu	37	8	41122667	41122667	+	3'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS14	10147	broad.mit.edu	37	19	19105995	19105995	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS14	10147	broad.mit.edu	37	19	19115479	19115479	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN5	94097	broad.mit.edu	37	2	73188361	73188361	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCG	6445	broad.mit.edu	37	13	23778145	23778145	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14022192	14022192	+	Silent	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14166790	14166790	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGOL2	151246	broad.mit.edu	37	2	201448231	201448231	+	3'UTR	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D2A	9047	broad.mit.edu	37	1	156785870	156785870	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2B	285590	broad.mit.edu	37	5	171833469	171833469	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3YL1	26751	broad.mit.edu	37	2	264858	264858	+	5'Flank	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX	6473	broad.mit.edu	37	X	595436	595436	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52030927	52030927	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164700791	164700791	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164757594	164757594	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122755733	122755733	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43212265	43212265	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A1	6568	broad.mit.edu	37	6	25819480	25819480	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A2	6506	broad.mit.edu	37	11	35302387	35302387	+	Intron	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A12	8604	broad.mit.edu	37	2	172665976	172665976	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A41	284427	broad.mit.edu	37	19	6432010	6432010	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A2	1836	broad.mit.edu	37	5	149361141	149361141	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92261929	92261929	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A10	81031	broad.mit.edu	37	20	45354901	45354901	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A13	114134	broad.mit.edu	37	12	40223820	40223820	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A9	56606	broad.mit.edu	37	4	9998724	9998724	+	Intron	SNP	T	A	A	rs145495607	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F4	341880	broad.mit.edu	37	14	58047908	58047908	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A8	64116	broad.mit.edu	37	4	103189107	103189107	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75681541	75681541	+	Silent	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC48A1	55652	broad.mit.edu	37	12	48174351	48174352	+	3'UTR	INS	-	T	T	rs63243960		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A10	125206	broad.mit.edu	37	17	18916964	18916964	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A1	6523	broad.mit.edu	37	22	32505861	32505861	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A1	6523	broad.mit.edu	37	22	32505868	32505868	+	Intron	DEL	G	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55719039	55719039	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20658776	20658776	+	Missense_Mutation	SNP	G	T	T	rs138885115		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A7	6534	broad.mit.edu	37	5	149584454	149584454	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40342702	40342702	+	Silent	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40657408	40657408	+	Silent	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143551051	143551051	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO3A1	28232	broad.mit.edu	37	15	92459412	92459412	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168310186	168310186	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144904540	144904540	+	Silent	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164907949	164907949	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88329265	88329265	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK6	84189	broad.mit.edu	37	13	86368848	86368848	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCAD1	56916	broad.mit.edu	37	4	95204271	95204271	+	Splice_Site	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC5	23137	broad.mit.edu	37	9	72914927	72914927	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2666802	2666802	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2784545	2784545	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNF8	11267	broad.mit.edu	37	17	47008999	47008999	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1161369	1161369	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX13	23161	broad.mit.edu	37	7	17937112	17937112	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108339330	108339330	+	Intron	DEL	C	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106976621	106976621	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	107006865	107006865	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231152696	231152696	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPACA3	124912	broad.mit.edu	37	17	31324238	31324238	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118534035	118534035	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAST	6683	broad.mit.edu	37	2	32314550	32314550	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172607310	172607310	+	3'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172643148	172643148	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA19	219938	broad.mit.edu	37	11	133711809	133711809	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123945517	123945517	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA6	54558	broad.mit.edu	37	1	48901539	48901539	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATS1	221409	broad.mit.edu	37	6	44329903	44329903	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2E	6704	broad.mit.edu	37	1	153065951	153065951	+	3'UTR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55652955	55652955	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158646153	158646153	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65289517	65289517	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64491077	64491077	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP68	6730	broad.mit.edu	37	17	74057417	74057417	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSRP1	6749	broad.mit.edu	37	11	57099550	57099550	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX2IP	117178	broad.mit.edu	37	1	85117782	85117782	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52681440	52681440	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53038483	53038483	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53077587	53077587	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBPL1	57559	broad.mit.edu	37	10	90698126	90698126	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67937593	67937593	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRBP	55342	broad.mit.edu	37	9	125946282	125946282	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN4	29888	broad.mit.edu	37	19	47227989	47227989	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMO3	6612	broad.mit.edu	37	21	46226925	46226925	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT6H	6830	broad.mit.edu	37	17	27013448	27013448	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPV3L1	6832	broad.mit.edu	37	10	70962336	70962336	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUV39H1	6839	broad.mit.edu	37	X	48559162	48559162	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152523144	152523144	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64518741	64518741	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB1	10454	broad.mit.edu	37	22	39818029	39818029	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123970767	123970767	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF10	6881	broad.mit.edu	37	11	6633011	6633011	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF3	83860	broad.mit.edu	37	10	8006284	8006284	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARBP2	6895	broad.mit.edu	37	12	53898716	53898716	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS	6897	broad.mit.edu	37	5	33454958	33454958	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS	6897	broad.mit.edu	37	5	33462014	33462014	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R2	80834	broad.mit.edu	37	1	19175751	19175751	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D12	23232	broad.mit.edu	37	10	96269795	96269795	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	100023809	100023809	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	99979835	99979835	+	5'UTR	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCC	6903	broad.mit.edu	37	6	42713449	42713449	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85422342	85422342	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX19	9095	broad.mit.edu	37	1	168215840	168215840	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TC2N	123036	broad.mit.edu	37	14	92251489	92251489	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3B	51224	broad.mit.edu	37	18	44561359	44561359	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1L	256536	broad.mit.edu	37	10	132891705	132891705	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1L	256536	broad.mit.edu	37	10	133106464	133106465	+	Intron	DNP	GG	CT	CT			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCOF1	6949	broad.mit.edu	37	5	149776279	149776279	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD2	8463	broad.mit.edu	37	19	49844578	49844578	+	3'UTR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65180333	65180333	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT4	150483	broad.mit.edu	37	2	95539252	95539252	+	Intron	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEK	7010	broad.mit.edu	37	9	27109646	27109646	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20856284	20856284	+	Intron	DEL	C	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET2	54790	broad.mit.edu	37	4	106155526	106155526	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBRAP1	9392	broad.mit.edu	37	2	105897158	105897158	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM1	7051	broad.mit.edu	37	14	24729317	24729317	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD1P1	374500	broad.mit.edu	37	13	52857473	52857474	+	RNA	DNP	CA	TT	TT			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD1	55901	broad.mit.edu	37	13	52971793	52971793	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11419006	11419006	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137918066	137918066	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138208637	138208637	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138378419	138378419	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155503252	155503252	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE4	7091	broad.mit.edu	37	9	82267549	82267549	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75315262	75315262	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCC3	57458	broad.mit.edu	37	12	94972070	94972070	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM161B	153396	broad.mit.edu	37	5	87494990	87494990	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15556479	15556479	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS13	84000	broad.mit.edu	37	11	117789104	117789104	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19776021	19776021	+	5'Flank	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117825220	117825220	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF1B	7133	broad.mit.edu	37	1	12254473	12254474	+	Intron	DNP	GG	TT	TT			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNK2	10188	broad.mit.edu	37	3	195594873	195594873	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175324464	175324464	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175334909	175334909	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218701075	218701075	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577142	7577142	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP63	8626	broad.mit.edu	37	3	189606907	189606907	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH1	7166	broad.mit.edu	37	11	18042837	18042837	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72366182	72366182	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186337169	186337169	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10914281	10914281	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM22	10346	broad.mit.edu	37	11	5730293	5730293	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM55	84675	broad.mit.edu	37	8	67062636	67062636	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM63	84676	broad.mit.edu	37	1	26386766	26386766	+	Silent	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14388653	14388653	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP13	9319	broad.mit.edu	37	5	894987	894987	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP6	7205	broad.mit.edu	37	7	100469127	100469127	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72965926	72965926	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768797	31768797	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK1B	83942	broad.mit.edu	37	5	112769636	112769636	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC12	54970	broad.mit.edu	37	11	113236979	113236979	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC14	151613	broad.mit.edu	37	3	180328339	180328339	+	3'UTR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38495130	38495130	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38523250	38523250	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL7	79739	broad.mit.edu	37	1	84387041	84387041	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179617807	179617807	+	Intron	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179664346	179664346	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA1B	10376	broad.mit.edu	37	12	49525116	49525116	+	5'UTR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3C	7278	broad.mit.edu	37	13	19751081	19751081	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBAL3	79861	broad.mit.edu	37	10	5435356	5435356	+	3'UTR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP2	10844	broad.mit.edu	37	10	135116245	135116245	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72081520	72081520	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA2	10054	broad.mit.edu	37	19	34945492	34945492	+	Intron	DEL	C	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAC2	337867	broad.mit.edu	37	13	100037449	100037449	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2K	3093	broad.mit.edu	37	4	39772780	39772780	+	Intron	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2O	63893	broad.mit.edu	37	17	74393823	74393823	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A9	54600	broad.mit.edu	37	2	234581133	234581133	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A3	79799	broad.mit.edu	37	4	69811051	69811051	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69885299	69885299	+	Intron	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43543308	43543308	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5CL	222643	broad.mit.edu	37	6	41011140	41011140	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP1	7378	broad.mit.edu	37	7	48139214	48139214	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17565899	17565899	+	5'UTR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	120692555	120692555	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15049924	15049924	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	32391729	32391729	+	IGR	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	61311272	61311272	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	77142151	77142151	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	123675992	123675992	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124109554	124109554	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18908661	18908661	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18994078	18994078	+	IGR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23426402	23426402	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27911656	27911656	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43543538	43543538	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48649380	48649380	+	IGR	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50129362	50129362	+	IGR	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51436305	51436305	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55093380	55093380	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55093953	55093953	+	IGR	SNP	G	A	A	rs145576636	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55156481	55156481	+	IGR	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80364703	80364703	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89804510	89804510	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	110868083	110868083	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	129499914	129499914	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	19566190	19566190	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	54026701	54026701	+	IGR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	56905840	56905840	+	IGR	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61625358	61625358	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61626505	61626505	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	64078758	64078758	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	64216026	64216026	+	IGR	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80422935	80422935	+	IGR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80633333	80633333	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80655824	80655824	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	83545762	83545762	+	IGR	SNP	G	T	T	rs148576788	by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105467180	105467180	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19240396	19240396	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19241053	19241053	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19255194	19255194	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19301513	19301513	+	IGR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19747119	19747119	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	21835059	21835059	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	26691902	26691902	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	39743840	39743840	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	66362833	66362833	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90485546	90485546	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19123631	19123631	+	IGR	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19412638	19412638	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19421542	19421542	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20134414	20134414	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20586668	20586668	+	IGR	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	36523533	36523533	+	IGR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49985251	49985252	+	IGR	INS	-	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20359104	20359104	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20462431	20462431	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20468133	20468133	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21369455	21369455	+	IGR	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22448522	22448522	+	IGR	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31114932	31114932	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34339084	34339084	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34481885	34481885	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62574295	62574295	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21827809	21827809	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26034260	26034260	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26081573	26081573	+	IGR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52030164	52030164	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60316468	60316468	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14392834	14392834	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15303399	15303399	+	IGR	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65042345	65042345	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16100843	16100843	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23039942	23039942	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44388191	44388191	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53819040	53819040	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55182797	55182797	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	105977138	105977138	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	119157832	119157832	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148902533	148902533	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903677	148903677	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149042106	149042106	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149092525	149092525	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159248954	159248954	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165992044	165992044	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	241995380	241995380	+	IGR	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247394590	247394590	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247769848	247769848	+	IGR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247902009	247902009	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247902330	247902330	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247902491	247902492	+	IGR	DNP	CC	AA	AA			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249065847	249065847	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249066301	249066301	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	35116026	35116026	+	IGR	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	39174638	39174638	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	40183817	40183817	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	50758856	50758856	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	62655027	62655027	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	68841073	68841073	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73571391	73571391	+	IGR	DEL	G	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	84710150	84710150	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	4004731	4004731	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10614601	10614601	+	IGR	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181707	11181707	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20617184	20617184	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24475574	24475574	+	IGR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31882803	31882803	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31933361	31933361	+	IGR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32434219	32434219	+	IGR	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16920109	16920109	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	21422362	21422362	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	21422367	21422367	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	26819035	26819035	+	IGR	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106870004	106870004	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108537423	108537423	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	121254911	121254911	+	IGR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132181379	132181379	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	188690245	188690245	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	198244924	198244924	+	IGR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	224095706	224095706	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58687551	58687551	+	IGR	DEL	C	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81423936	81423937	+	IGR	DNP	GG	AT	AT			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91888356	91888356	+	IGR	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	109693906	109693906	+	IGR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116365465	116365465	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163719283	163719283	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	1637630	1637630	+	IGR	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	170670839	170670839	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180960623	180960623	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	183745062	183745062	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82856843	82856843	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	106448252	106448252	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112473333	112473333	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112998829	112998829	+	IGR	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117115460	117115460	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117520193	117520193	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	127485121	127485121	+	IGR	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	130058639	130058639	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	145494122	145494122	+	IGR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190394126	190394126	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3904002	3904002	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63842415	63842415	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144037530	144037530	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173941040	173941040	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23304347	23304347	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23305350	23305350	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882742	29882742	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	31053606	31053606	+	IGR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	36588682	36588682	+	IGR	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39720486	39720486	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	44113797	44113797	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7296519	7296519	+	IGR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99333276	99333276	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106115328	106115328	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	126579177	126579177	+	IGR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48181495	48181495	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50138980	50138980	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	56296718	56296718	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58446409	58446409	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72261307	72261307	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	76296004	76296004	+	IGR	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10492322	10492322	+	IGR	SNP	C	A	A	rs78561361	byFrequency;by1000genomes	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109638790	109638790	+	IGR	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	121874890	121874890	+	IGR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145280437	145280437	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	150311116	150311116	+	IGR	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	16623494	16623495	+	IGR	INS	-	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38695297	38695297	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	45451316	45451316	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53255379	53255379	+	IGR	DEL	G	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53256600	53256600	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53854794	53854794	+	IGR	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54487433	54487433	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55705986	55705986	+	IGR	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55705988	55705988	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62910488	62910489	+	IGR	DNP	CC	AA	AA			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63392057	63392057	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	66347182	66347182	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	82286335	82286335	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84613036	84613036	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	40266001	40266002	+	IGR	INS	-	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48012981	48012981	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	54446232	54446232	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	67898224	67898224	+	IGR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	68761389	68761389	+	IGR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70042285	70042285	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7216061	7216061	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73142262	73142262	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	77515745	77515745	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83203879	83203879	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89498119	89498119	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	103493658	103493658	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109933014	109933017	+	IGR	DEL	ATTC	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	2875380	2875380	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30800015	30800015	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43163077	43163077	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357295	68357295	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68438645	68438645	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	71226073	71226073	+	IGR	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	79655314	79655314	+	IGR	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	80794171	80794171	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84702121	84702121	+	IGR	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115804898	115804899	+	IGR	DNP	GG	TT	TT			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134746854	134746854	+	IGR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134814902	134814902	+	IGR	SNP	A	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43889992	43889992	+	IGR	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45772457	45772457	+	IGR	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57096003	57096003	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65295193	65295193	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74965779	74965779	+	IGR	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89147602	89147602	+	IGR	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	91931575	91931575	+	IGR	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92644204	92644204	+	IGR	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAPB	9217	broad.mit.edu	37	20	57015988	57015988	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV1	7409	broad.mit.edu	37	19	6821908	6821908	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108226003	108226003	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101194677	101194677	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177608715	177608715	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTA1	51534	broad.mit.edu	37	6	142468446	142468446	+	Missense_Mutation	SNP	C	T	T	rs137966407		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98914217	98914217	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6232408	6232408	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP11	51729	broad.mit.edu	37	12	14943725	14943725	+	Intron	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY2	115825	broad.mit.edu	37	13	52158979	52158979	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177071448	177071448	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR27	253769	broad.mit.edu	37	6	170072269	170072269	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR31	114987	broad.mit.edu	37	9	116080656	116080656	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167196625	167196625	+	3'UTR	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR5	11091	broad.mit.edu	37	9	137021782	137021782	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36564410	36564410	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241953805	241953805	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124140660	124140660	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC8	90199	broad.mit.edu	37	20	44197438	44197438	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRN	7486	broad.mit.edu	37	8	31030597	31030597	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108620934	108620934	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC2	80014	broad.mit.edu	37	4	184114661	184114661	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78420706	78420706	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL1	6375	broad.mit.edu	37	1	168549546	168549546	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31594945	31594945	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP1	165904	broad.mit.edu	37	3	39229781	39229781	+	Missense_Mutation	SNP	C	T	T	rs145699338	byFrequency	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR7	343702	broad.mit.edu	37	20	30584429	30584429	+	Silent	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128881443	128881443	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPOT	11260	broad.mit.edu	37	12	64833020	64833020	+	Intron	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180793779	180793779	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC5	7520	broad.mit.edu	37	2	217006040	217006040	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YES1	7525	broad.mit.edu	37	18	751704	751704	+	Splice_Site	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YPEL5	51646	broad.mit.edu	37	2	30379545	30379546	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB8A	653121	broad.mit.edu	37	1	33059319	33059319	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H7B	23264	broad.mit.edu	37	22	41735076	41735076	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111698093	111698093	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC2	54877	broad.mit.edu	37	18	60228025	60228025	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145157428	145157428	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72992414	72992414	+	Missense_Mutation	SNP	G	A	A	rs62620235	byFrequency	TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77765788	77765788	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77775393	77775393	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP161	7541	broad.mit.edu	37	18	5290955	5290955	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147106793	147106793	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC5	85416	broad.mit.edu	37	13	100617849	100617849	+	Missense_Mutation	SNP	C	A	A	rs140607831		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF148	7707	broad.mit.edu	37	3	124953081	124953081	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22171470	22171470	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF217	7764	broad.mit.edu	37	20	52198122	52198122	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22271935	22271935	+	Silent	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF259	8882	broad.mit.edu	37	11	116656339	116656339	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280D	54816	broad.mit.edu	37	15	56974587	56974587	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF286B	729288	broad.mit.edu	37	17	18575720	18575720	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF334	55713	broad.mit.edu	37	20	45130999	45130999	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF33B	7582	broad.mit.edu	37	10	43089807	43089807	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21605926	21605926	+	Intron	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF462	58499	broad.mit.edu	37	9	109736636	109736637	+	Intron	DNP	GG	TT	TT			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF470	388566	broad.mit.edu	37	19	57081648	57081648	+	Splice_Site	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57188925	57188925	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF480	147657	broad.mit.edu	37	19	52825491	52825491	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22847468	22847468	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF493	284443	broad.mit.edu	37	19	21606372	21606372	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF528	84436	broad.mit.edu	37	19	52919465	52919465	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039161	31039161	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF560	147741	broad.mit.edu	37	19	9583779	9583779	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF582	147948	broad.mit.edu	37	19	56901841	56901841	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	53555	53555	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF644	84146	broad.mit.edu	37	1	91382426	91382426	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF648	127665	broad.mit.edu	37	1	182025530	182025530	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF669	79862	broad.mit.edu	37	1	247264032	247264032	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63673480	63673480	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75A	7627	broad.mit.edu	37	16	3367176	3367176	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780B	163131	broad.mit.edu	37	19	40541968	40541968	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF793	390927	broad.mit.edu	37	19	38014230	38014230	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185801235	185801235	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88962877	88962877	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF80	7634	broad.mit.edu	37	3	113955337	113955337	+	Silent	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF813	126017	broad.mit.edu	37	19	53999379	53999379	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	134649033	134649033	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30998449	30998449	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	51789714	51789714	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55062902	55062902	+	RNA	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58659684	58659684	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89771319	89771319	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31279344	31279344	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31298359	31298359	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22670878	22670878	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23001427	23001427	+	Intron	SNP	T	G	G			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	31291038	31291038	+	RNA	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20489437	20489437	+	RNA	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22473010	22473010	+	RNA	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	35044619	35044619	+	5'Flank	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76067748	76067748	+	5'Flank	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29107479	29107479	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5320526	5320526	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	78272188	78272188	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15880550	15880550	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23316887	23316887	+	RNA	SNP	G	T	T	rs61754892		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44612497	44612497	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121115806	121115806	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148887860	148887860	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157895024	157895024	+	5'Flank	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159409482	159409482	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16255895	16255895	+	5'Flank	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186672189	186672189	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186697768	186697768	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89160340	89160340	+	RNA	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89399275	89399275	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89513440	89513440	+	Intron	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90007588	90007588	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90060458	90060458	+	Intron	SNP	A	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90211562	90211562	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90212109	90212109	+	RNA	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90260288	90260288	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135249087	135249087	+	5'Flank	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	164028033	164028033	+	RNA	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142149070	142149070	+	Intron	SNP	C	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142469271	142469271	+	Intron	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37861158	37861158	+	Intron	DEL	G	-	-			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38407062	38407062	+	Intron	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64035134	64035134	+	RNA	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	33618126	33618126	+	5'Flank	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69634577	69634577	+	Intron	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69634735	69634735	+	RNA	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	88444521	88444521	+	RNA	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	5822	5822	+	5'Flank	SNP	G	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
