Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2ML1	144568	broad.mit.edu	37	12	8975341	8975341	+	Intron	DEL	G	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48452202	48452202	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87133606	87133606	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87060734	87060734	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20767983	20767983	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48226495	48226495	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101604270	101604270	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF1	23	broad.mit.edu	37	6	30545196	30545196	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89400993	89400993	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31355401	31355401	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT2	10965	broad.mit.edu	37	14	74040086	74040086	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT2	10965	broad.mit.edu	37	14	74040352	74040352	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL1	2180	broad.mit.edu	37	4	185681563	185681563	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131308932	131308932	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM1	116285	broad.mit.edu	37	16	20696552	20696552	+	Silent	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTC1	70	broad.mit.edu	37	15	35086895	35086895	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43896100	43896101	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73186481	73186481	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7820767	7820767	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131812695	131812695	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADC	113451	broad.mit.edu	37	1	33562528	33562528	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPRHL2	54936	broad.mit.edu	37	1	36558896	36558896	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGK	55750	broad.mit.edu	37	7	141336877	141336877	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62284652	62284652	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNA	80709	broad.mit.edu	37	9	117121705	117121705	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1E2	83592	broad.mit.edu	37	10	4889419	4889419	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3A1	218	broad.mit.edu	37	17	19644355	19644355	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG3	10195	broad.mit.edu	37	3	183960733	183960733	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29451871	29451871	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73682530	73682530	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX15B	247	broad.mit.edu	37	17	7950631	7950631	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALX1	8092	broad.mit.edu	37	12	85694976	85694976	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115220954	115220954	+	Silent	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38457456	38457456	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38534158	38534158	+	Intron	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54403505	54403505	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139819923	139819923	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD50	57182	broad.mit.edu	37	4	125599824	125599824	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	6030514	6030514	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	6055196	6055196	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26664852	26664852	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22272495	22272495	+	Splice_Site	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1G2	8906	broad.mit.edu	37	14	24035477	24035477	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40829091	40829091	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112174637	112174637	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112179485	112179485	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21229477	21229477	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOL3	80833	broad.mit.edu	37	22	36537717	36537717	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115323402	115323402	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35196688	35196688	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36093500	36093500	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141049954	141049954	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP12	94134	broad.mit.edu	37	10	32097632	32097632	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24981726	24981726	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11204653	11204653	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF12	23365	broad.mit.edu	37	11	120317638	120317638	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5B	84159	broad.mit.edu	37	10	63852413	63852413	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL9	132946	broad.mit.edu	37	4	57384799	57384799	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23319719	23319719	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131130695	131130695	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB17	127247	broad.mit.edu	37	1	76387707	76387707	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASNS	440	broad.mit.edu	37	7	97487739	97487739	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6B	1388	broad.mit.edu	37	6	32089085	32089085	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160071224	160071224	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138880848	138880848	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138880885	138880885	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25284123	25284123	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A2	23400	broad.mit.edu	37	1	17323644	17323644	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193032855	193032855	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A2	488	broad.mit.edu	37	12	110764236	110764236	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A2	488	broad.mit.edu	37	12	110777088	110777088	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A3	489	broad.mit.edu	37	17	3845875	3845875	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B3	492	broad.mit.edu	37	X	152823561	152823561	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7B	540	broad.mit.edu	37	13	52548394	52548394	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7B	540	broad.mit.edu	37	13	52548417	52548417	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALT1	8708	broad.mit.edu	37	2	168725727	168725727	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69349117	69349117	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANK1	55024	broad.mit.edu	37	4	102776101	102776102	+	Intron	INS	-	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33313482	33313482	+	Missense_Mutation	SNP	C	A	A	rs140396972		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BHMT	635	broad.mit.edu	37	5	78421881	78421881	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60549720	60549720	+	Intron	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLK	640	broad.mit.edu	37	8	11418838	11418838	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMI1	648	broad.mit.edu	37	10	22606898	22606899	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMX	660	broad.mit.edu	37	X	15561295	15561295	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL3	128859	broad.mit.edu	37	20	31624479	31624479	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41215514	41215514	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41215796	41215796	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRIP1	83990	broad.mit.edu	37	17	59924603	59924603	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSDC1	55108	broad.mit.edu	37	1	32843938	32843938	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSX	390259	broad.mit.edu	37	11	122850098	122850098	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107914306	107914306	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTC	685	broad.mit.edu	37	4	75681169	75681169	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf12	26148	broad.mit.edu	37	10	98708798	98708798	+	5'UTR	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76255238	76255238	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf12	196477	broad.mit.edu	37	12	91348302	91348303	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40044092	40044092	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112701973	112701973	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97073555	97073555	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf73	91828	broad.mit.edu	37	14	103571418	103571418	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf24	56851	broad.mit.edu	37	15	34382622	34382622	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922552	24922552	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100332491	100332491	+	RNA	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100333176	100333176	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf55	124045	broad.mit.edu	37	16	89735693	89735693	+	Splice_Site	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf100	200159	broad.mit.edu	37	1	244528036	244528036	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf112	55732	broad.mit.edu	37	1	169801565	169801565	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf59	113802	broad.mit.edu	37	1	109191326	109191326	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31878733	31878733	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf12	55184	broad.mit.edu	37	20	18377240	18377240	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf99	149992	broad.mit.edu	37	21	14469398	14469398	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73850838	73850838	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf56	55471	broad.mit.edu	37	2	37464964	37464964	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf71	388939	broad.mit.edu	37	2	29295044	29295044	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf14	57415	broad.mit.edu	37	3	62318803	62318803	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf31	132001	broad.mit.edu	37	3	11832011	11832011	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf14	84273	broad.mit.edu	37	4	57843023	57843023	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf26	152816	broad.mit.edu	37	4	76489658	76489658	+	3'UTR	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37183732	37183732	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37198949	37198949	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf222	389384	broad.mit.edu	37	6	36297905	36297905	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69437834	69437834	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf41	80185	broad.mit.edu	37	8	33369530	33369530	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39306622	39306622	+	Intron	SNP	G	T	T	rs140858634	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA4	762	broad.mit.edu	37	17	58235398	58235398	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA5A	763	broad.mit.edu	37	16	87960443	87960443	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA6	765	broad.mit.edu	37	1	9022659	9022659	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAB39L	81617	broad.mit.edu	37	13	49933675	49933675	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24432034	24432034	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65117912	65117912	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140881374	140881374	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2714278	2714278	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181707490	181707490	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181727300	181727300	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49070182	49070182	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48699064	48699064	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB1	782	broad.mit.edu	37	17	37333827	37333827	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG7	59284	broad.mit.edu	37	19	54418584	54418585	+	Intron	DNP	CC	AA	AA			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	85985088	85985088	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS2	93664	broad.mit.edu	37	7	122303495	122303495	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27449565	27449565	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAGE1	285782	broad.mit.edu	37	6	7339120	7339120	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93091394	93091394	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN10	11132	broad.mit.edu	37	2	241528608	241528608	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44148513	44148513	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110494202	110494202	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP9	842	broad.mit.edu	37	1	15819328	15819328	+	3'UTR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERG	57828	broad.mit.edu	37	19	38845552	38845552	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92940400	92940400	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180377327	180377327	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119966424	119966424	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC86	79080	broad.mit.edu	37	11	60617836	60617836	+	3'UTR	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC99	54908	broad.mit.edu	37	5	169021341	169021341	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKAR	886	broad.mit.edu	37	4	26491865	26491865	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL17	6361	broad.mit.edu	37	16	57448996	57448996	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT4	10575	broad.mit.edu	37	2	62107456	62107456	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158324257	158324257	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD244	51744	broad.mit.edu	37	1	160806015	160806015	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD244	51744	broad.mit.edu	37	1	160808161	160808161	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD44	960	broad.mit.edu	37	11	35208288	35208288	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD53	963	broad.mit.edu	37	1	111437688	111437688	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227348195	227348195	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24511369	24511369	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21765012	21765012	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21817276	21817276	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31317544	31317544	+	Silent	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26906015	26906015	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK17	5128	broad.mit.edu	37	12	96704920	96704920	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK18	5129	broad.mit.edu	37	1	205498165	205498165	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123313052	123313052	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP3	80279	broad.mit.edu	37	17	46054172	46054172	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDR1	1038	broad.mit.edu	37	X	139866649	139866649	+	5'UTR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF1	10658	broad.mit.edu	37	11	47498392	47498392	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF1	10658	broad.mit.edu	37	11	47498401	47498401	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF5	60680	broad.mit.edu	37	19	3273874	3273874	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104068758	104068758	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214803903	214803903	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP250	11190	broad.mit.edu	37	20	34061702	34061702	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31915899	31915899	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196695668	196695668	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHFR	55743	broad.mit.edu	37	12	133432932	133432932	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHI3L1	1116	broad.mit.edu	37	1	203149569	203149569	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHI3L1	1116	broad.mit.edu	37	1	203149613	203149613	+	Silent	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN1	1123	broad.mit.edu	37	2	175677131	175677131	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86905931	86905931	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4A	50856	broad.mit.edu	37	12	8278090	8278090	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4D	338339	broad.mit.edu	37	12	8670788	8670788	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMA1	1215	broad.mit.edu	37	14	24977420	24977420	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79026737	79026737	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21545047	21545047	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17388325	17388325	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41421699	41421699	+	Silent	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1443078	1443078	+	Intron	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147259108	147259108	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125262125	125262125	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125521219	125521219	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103491099	103491099	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101749483	101749483	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70639393	70639393	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139737681	139737681	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86523669	86523669	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7420368	7420368	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189903941	189903941	+	Intron	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189922115	189922115	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10104574	10104574	+	Intron	DEL	T	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130285829	130285829	+	Silent	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A2	1298	broad.mit.edu	37	1	40775972	40775972	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG	22820	broad.mit.edu	37	3	128987441	128987441	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47605386	47605386	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COTL1	23406	broad.mit.edu	37	16	84600394	84600394	+	3'UTR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130023290	130023290	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB1	64506	broad.mit.edu	37	15	83224596	83224596	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPM	1368	broad.mit.edu	37	12	69265736	69265736	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211504768	211504768	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF3	51692	broad.mit.edu	37	2	9574073	9574073	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125521609	125521609	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197390148	197390148	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L2	64764	broad.mit.edu	37	7	137567414	137567414	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRMP1	1400	broad.mit.edu	37	4	5827139	5827139	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRNKL1	51340	broad.mit.edu	37	20	20017996	20017996	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3267071	3267071	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113564965	113564965	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113599413	113599413	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST1	1469	broad.mit.edu	37	20	23731400	23731400	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST2	1470	broad.mit.edu	37	20	23804629	23804629	+	3'UTR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST7	8530	broad.mit.edu	37	20	24939703	24939703	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST7	8530	broad.mit.edu	37	20	24940247	24940247	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	79806305	79806305	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11098920	11098920	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11346536	11346536	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16721054	16721054	+	5'UTR	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117422844	117422844	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148484122	148484122	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL4A	8451	broad.mit.edu	37	13	113907476	113907476	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43183858	43183858	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111786100	111786100	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35966554	35966554	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	36004195	36004195	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4V2	285440	broad.mit.edu	37	4	187118744	187118744	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP51A1	1595	broad.mit.edu	37	7	91763538	91763538	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH1	9267	broad.mit.edu	37	17	76688411	76688411	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72063200	72063200	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAGLA	747	broad.mit.edu	37	11	61502411	61502411	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DARC	2532	broad.mit.edu	37	1	159175475	159175475	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST2	127579	broad.mit.edu	37	1	155002518	155002518	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN2	10540	broad.mit.edu	37	12	57939923	57939923	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDIT4	54541	broad.mit.edu	37	10	74034654	74034654	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX18	8886	broad.mit.edu	37	2	118579437	118579437	+	Splice_Site	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169342946	169342946	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEC1	50514	broad.mit.edu	37	9	118163613	118163613	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31605212	31605212	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DERL2	51009	broad.mit.edu	37	17	5388539	5388539	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DET1	55070	broad.mit.edu	37	15	89074105	89074105	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX33	56919	broad.mit.edu	37	17	5366747	5366747	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISC1	27185	broad.mit.edu	37	1	231829654	231829654	+	Silent	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124377659	124377659	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32490440	32490440	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMPK	1760	broad.mit.edu	37	19	46280928	46280928	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21742342	21742342	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20996323	20996323	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13714464	13714464	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13776554	13776554	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196822080	196822080	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38854616	38854616	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132182719	132182719	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE1	1773	broad.mit.edu	37	16	3706127	3706127	+	Nonsense_Mutation	SNP	C	A	A	rs140382618		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM1L	10059	broad.mit.edu	37	12	32895728	32895728	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98097824	98097824	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37605353	37605353	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154561257	154561257	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPT	1805	broad.mit.edu	37	1	168670056	168670056	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27167549	27167549	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105436376	105436376	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9783698	9783698	+	Missense_Mutation	SNP	C	A	A	rs147198780	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSE	29940	broad.mit.edu	37	6	116757364	116757364	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOXA1	90527	broad.mit.edu	37	15	45412317	45412317	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2LI1	51626	broad.mit.edu	37	2	44032291	44032291	+	Splice_Site	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK1A	1859	broad.mit.edu	37	21	38884144	38884144	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83239258	83239258	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2	1938	broad.mit.edu	37	19	3979238	3979238	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140535856	140535856	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140535859	140535859	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184040320	184040320	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4H	7458	broad.mit.edu	37	7	73605631	73605634	+	Intron	DEL	TTCT	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL4	6785	broad.mit.edu	37	6	80629028	80629028	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENO1	2023	broad.mit.edu	37	1	8923352	8923352	+	Missense_Mutation	SNP	G	A	A	rs143592223		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTHD1	150350	broad.mit.edu	37	22	40283764	40283764	+	5'UTR	SNP	G	T	T	rs146467769	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89259568	89259568	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89457155	89457155	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97467522	97467522	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	94068117	94068117	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22895844	22895844	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142562270	142562270	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212488780	212488780	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212576912	212576912	+	Intron	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESX1	80712	broad.mit.edu	37	X	103495005	103495005	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93091298	93091298	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	132937745	132937745	+	5'Flank	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC3	51010	broad.mit.edu	37	9	37780832	37780832	+	Silent	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6146051	6146051	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57419895	57419895	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP12	646486	broad.mit.edu	37	8	82441609	82441609	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM117B	150864	broad.mit.edu	37	2	203620382	203620382	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM127A	8933	broad.mit.edu	37	X	134166362	134166362	+	5'UTR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM131B	9715	broad.mit.edu	37	7	143054475	143054475	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61014147	61014147	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179A	165186	broad.mit.edu	37	2	29222012	29222012	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM196A	642938	broad.mit.edu	37	10	128974376	128974376	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM199X	139231	broad.mit.edu	37	X	103434287	103434287	+	Splice_Site	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34148121	34148121	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34149640	34149640	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48A	55578	broad.mit.edu	37	13	37598127	37598127	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM50B	26240	broad.mit.edu	37	6	3850660	3850660	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190195428	190195428	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89818612	89818612	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45645649	45645649	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92523332	92523332	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126389741	126389741	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FATE1	89885	broad.mit.edu	37	X	150890260	150890260	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127627160	127627160	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO45	200933	broad.mit.edu	37	3	196311060	196311060	+	Silent	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO47	494188	broad.mit.edu	37	17	37113382	37113382	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAR	2204	broad.mit.edu	37	19	55399394	55399394	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAR	2204	broad.mit.edu	37	19	55400877	55400877	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2B	2213	broad.mit.edu	37	1	161641444	161641444	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155507932	155507932	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD6	55785	broad.mit.edu	37	12	95483427	95483427	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGL2	10875	broad.mit.edu	37	7	76826126	76826126	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGR	2268	broad.mit.edu	37	1	27939493	27939493	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL1	2273	broad.mit.edu	37	X	135279246	135279246	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL1	2273	broad.mit.edu	37	X	135288843	135288843	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FH	2271	broad.mit.edu	37	1	241663856	241663856	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIG4	9896	broad.mit.edu	37	6	110062637	110062637	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55766857	55766857	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152328575	152328575	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152280985	152280985	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ25363	401082	broad.mit.edu	37	3	109190653	109190653	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84607525	84607525	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58109130	58109130	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58109141	58109141	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29001430	29001430	+	Silent	SNP	G	T	T	rs61763178	byFrequency;by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180030131	180030131	+	3'UTR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC7	163479	broad.mit.edu	37	1	109270445	109270445	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOSB	2354	broad.mit.edu	37	19	45976089	45976089	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK1	221937	broad.mit.edu	37	7	4794082	4794082	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN2	3344	broad.mit.edu	37	2	48573489	48573489	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXO1	2308	broad.mit.edu	37	13	41134738	41134738	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD2	143162	broad.mit.edu	37	10	49430245	49430245	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRZB	2487	broad.mit.edu	37	2	183707282	183707282	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FST	10468	broad.mit.edu	37	5	52781418	52781418	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUBP1	8880	broad.mit.edu	37	1	78430612	78430612	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17469039	17469039	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161281319	161281319	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46930674	46930674	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161128507	161128507	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB2	2561	broad.mit.edu	37	5	160886748	160886748	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26581764	26581764	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173232803	173232803	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAPDHS	26330	broad.mit.edu	37	19	36035883	36035883	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72631257	72631257	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGCT	79017	broad.mit.edu	37	7	30538475	30538475	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP4	55303	broad.mit.edu	37	7	150270130	150270130	+	Silent	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP8	155038	broad.mit.edu	37	7	150174822	150174822	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6553455	6553455	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42007333	42007333	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLS	2744	broad.mit.edu	37	2	191786029	191786029	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYAT	10249	broad.mit.edu	37	11	58478151	58478151	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2B	55592	broad.mit.edu	37	12	100551026	100551026	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA7B	401647	broad.mit.edu	37	10	99619326	99619326	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20326035	20326035	+	Intron	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	94938599	94938599	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135430793	135430793	+	Missense_Mutation	SNP	C	T	T	rs146283448		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135455016	135455016	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR115	221393	broad.mit.edu	37	6	47679962	47679962	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22389682	22389682	+	Silent	SNP	G	A	A	rs146569496		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154071696	154071696	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR151	134391	broad.mit.edu	37	5	145895451	145895451	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR4	2828	broad.mit.edu	37	19	46094980	46094980	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR52	9293	broad.mit.edu	37	1	174417609	174417609	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP2	114928	broad.mit.edu	37	X	101970465	101970465	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX6	257202	broad.mit.edu	37	6	28472273	28472273	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1C	54762	broad.mit.edu	37	3	113627906	113627906	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88301013	88301013	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126173734	126173734	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRPEL2	134266	broad.mit.edu	37	5	148730755	148730755	+	Silent	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSS	2937	broad.mit.edu	37	20	33539581	33539581	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA2	2939	broad.mit.edu	37	6	52617777	52617777	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP5	26164	broad.mit.edu	37	20	60772967	60772967	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP5	26164	broad.mit.edu	37	20	60773887	60773887	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA2B	2981	broad.mit.edu	37	1	42620408	42620408	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106647225	106647225	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108673705	108673705	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMA	3001	broad.mit.edu	37	5	54403954	54403954	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAL	3034	broad.mit.edu	37	12	96386317	96386317	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122629425	122629425	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240037090	240037090	+	Intron	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFRP3	50810	broad.mit.edu	37	15	83808196	83808196	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD3	79654	broad.mit.edu	37	1	45476639	45476639	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43351281	43351281	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92848786	92848786	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93819046	93819046	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28544618	28544618	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFE	3077	broad.mit.edu	37	6	26092885	26092885	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BB	3018	broad.mit.edu	37	6	26043589	26043589	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3B	8358	broad.mit.edu	37	6	26032349	26032349	+	5'Flank	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3J	8356	broad.mit.edu	37	6	27861117	27861117	+	5'Flank	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLF	3131	broad.mit.edu	37	17	53392565	53392565	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLF	3131	broad.mit.edu	37	17	53398040	53398040	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS1	3157	broad.mit.edu	37	5	43293064	43293064	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPH2	3188	broad.mit.edu	37	X	100667151	100667151	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA5	3202	broad.mit.edu	37	7	27182784	27182784	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B14	51171	broad.mit.edu	37	19	49316833	49316833	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTA	283902	broad.mit.edu	37	16	73126930	73126930	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63256369	63256369	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70908115	70908115	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70926178	70926178	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYOU1	10525	broad.mit.edu	37	11	118922107	118922107	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICOS	29851	broad.mit.edu	37	2	204820546	204820546	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI44L	10964	broad.mit.edu	37	1	79093737	79093737	+	Missense_Mutation	SNP	G	T	T	rs149202070	byFrequency	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT140	9742	broad.mit.edu	37	16	1639764	1639764	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151164733	151164733	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118649140	118649140	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130415492	130415492	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF5	150084	broad.mit.edu	37	21	41142968	41142968	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9	57549	broad.mit.edu	37	1	159897081	159897081	+	3'UTR	DEL	G	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9	57549	broad.mit.edu	37	1	159897367	159897367	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9	57549	broad.mit.edu	37	1	159897802	159897802	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9	57549	broad.mit.edu	37	1	159904086	159904086	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111655217	111655217	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81585315	81585315	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76720783	76720783	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100992538	100992538	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	101038618	101038618	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62241001	62241001	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62257135	62257135	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62545190	62545190	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80	54617	broad.mit.edu	37	15	41272372	41272372	+	3'UTR	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5B	3633	broad.mit.edu	37	1	38409252	38409252	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISPD	729920	broad.mit.edu	37	7	16445652	16445652	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182390024	182390024	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31422393	31422393	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30500667	30500667	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187495635	187495635	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31372657	31372657	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52811656	52811656	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7697622	7697622	+	Missense_Mutation	SNP	G	A	A	rs139355305		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33626676	33626676	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33646156	33646156	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVNS1ABP	10625	broad.mit.edu	37	1	185276813	185276813	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6086622	6086622	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64953137	64953137	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124211774	124211774	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124211782	124211782	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170367347	170367347	+	Silent	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB1	3745	broad.mit.edu	37	20	48098496	48098496	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211032562	211032562	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211192455	211192455	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63179419	63179419	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163241380	163241380	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163374376	163374376	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163374397	163374397	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ8	3764	broad.mit.edu	37	12	21926239	21926239	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK13	56659	broad.mit.edu	37	14	90651009	90651009	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36768447	36768448	+	Splice_Site	DNP	GG	TT	TT			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44176935	44176935	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55958791	55958791	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26960922	26960922	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319L	79932	broad.mit.edu	37	1	35909843	35909843	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43887636	43887636	+	5'Flank	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0748	9840	broad.mit.edu	37	12	55356979	55356979	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123222457	123222457	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57176739	57176739	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1377	57562	broad.mit.edu	37	11	101833557	101833557	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94041498	94041498	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1524	57650	broad.mit.edu	37	3	108278852	108278852	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF18A	81930	broad.mit.edu	37	11	28113014	28113014	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72338890	72338890	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57943952	57943952	+	5'UTR	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5C	3800	broad.mit.edu	37	2	149840214	149840214	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5C	3800	broad.mit.edu	37	2	149840295	149840295	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5C	3800	broad.mit.edu	37	2	149840321	149840321	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL1	3802	broad.mit.edu	37	19	55290079	55290079	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DX1	90011	broad.mit.edu	37	19	55043926	55043926	+	RNA	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIT	3815	broad.mit.edu	37	4	55604780	55604780	+	3'UTR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF17	128209	broad.mit.edu	37	1	44584567	44584567	+	5'UTR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70681450	70681450	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL2	11275	broad.mit.edu	37	4	166235342	166235342	+	Intron	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK2	3817	broad.mit.edu	37	19	51381581	51381581	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK3	354	broad.mit.edu	37	19	51358290	51358290	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRB1	3820	broad.mit.edu	37	12	9751094	9751094	+	Splice_Site	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC4	8302	broad.mit.edu	37	12	10560133	10560133	+	3'UTR	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRF1	51348	broad.mit.edu	37	12	9986178	9986178	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA1	3836	broad.mit.edu	37	3	122155847	122155847	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRR1	11103	broad.mit.edu	37	12	75900017	75900017	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP15-1	254950	broad.mit.edu	37	21	31812752	31812752	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP26-1	388818	broad.mit.edu	37	21	31692318	31692318	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP6-1	337966	broad.mit.edu	37	21	31986246	31986246	+	5'Flank	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTDAP	388533	broad.mit.edu	37	19	35979410	35979410	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR2	3904	broad.mit.edu	37	19	55019214	55019214	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133928193	133928193	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARGE	9215	broad.mit.edu	37	22	34157235	34157235	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBP	3929	broad.mit.edu	37	20	36993307	36993307	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2A	353139	broad.mit.edu	37	1	152671340	152671340	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCLAT1	253558	broad.mit.edu	37	2	30791025	30791025	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136575116	136575116	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LECT1	11061	broad.mit.edu	37	13	53277900	53277900	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS13	29124	broad.mit.edu	37	19	40094607	40094607	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75622448	75622448	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1	3998	broad.mit.edu	37	18	57016532	57016532	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76197468	76197468	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165218684	165218684	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC149620	149620	broad.mit.edu	37	1	111825877	111825877	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC348926	348926	broad.mit.edu	37	4	3952865	3952865	+	Splice_Site	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC374443	374443	broad.mit.edu	37	12	9794521	9794521	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647288	647288	broad.mit.edu	37	13	75812633	75812633	+	3'UTR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653786	653786	broad.mit.edu	37	16	22563688	22563688	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727924	727924	broad.mit.edu	37	15	22298488	22298488	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161055031	161055031	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99753629	99753629	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99772444	99772444	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99772455	99772455	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151511846	151511847	+	Intron	INS	-	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42356224	42356224	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT2	340745	broad.mit.edu	37	10	85981770	85981770	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	140997090	140997090	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRPPRC	10128	broad.mit.edu	37	2	44187655	44187655	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC10	376132	broad.mit.edu	37	12	70004207	70004207	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC30	339291	broad.mit.edu	37	18	7231728	7231728	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137891	40137891	+	Intron	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52863952	52863952	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRFIP1	9208	broad.mit.edu	37	2	238671518	238671518	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74507414	74507415	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40745422	40745422	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTM1	57408	broad.mit.edu	37	3	54962005	54962005	+	Translation_Start_Site	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	116163796	116163796	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM14A	26065	broad.mit.edu	37	19	34706254	34706254	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM14A	26065	broad.mit.edu	37	19	34706595	34706595	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM14A	26065	broad.mit.edu	37	19	34706605	34706605	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LST-3TM12	338821	broad.mit.edu	37	12	21201840	21201840	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74999205	74999205	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39800952	39800952	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39926448	39926448	+	Missense_Mutation	SNP	G	C	C	rs150495633		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MADD	8567	broad.mit.edu	37	11	47304430	47304430	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA12	4111	broad.mit.edu	37	X	151900542	151900542	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77789536	77789536	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGIX	79917	broad.mit.edu	37	X	49021500	49021500	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAG	4099	broad.mit.edu	37	19	35803053	35803054	+	Intron	DNP	GG	AA	AA			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K4	4216	broad.mit.edu	37	6	161470037	161470037	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D2	256714	broad.mit.edu	37	X	20030537	20030537	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D3	79649	broad.mit.edu	37	X	135307074	135307074	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK2	2011	broad.mit.edu	37	11	63668364	63668364	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD6	114785	broad.mit.edu	37	12	57919610	57919610	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC5R	4161	broad.mit.edu	37	18	13826533	13826533	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART2	147407	broad.mit.edu	37	18	29340105	29340105	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138670047	138670047	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6301850	6301850	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47343335	47343335	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH2	4191	broad.mit.edu	37	7	75684173	75684173	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90397782	90397782	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP3L	9848	broad.mit.edu	37	4	170913210	170913210	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141740554	141740554	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL1	64780	broad.mit.edu	37	6	109770690	109770690	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR30B	407030	broad.mit.edu	37	8	135812831	135812831	+	RNA	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR505	574508	broad.mit.edu	37	X	139006376	139006376	+	RNA	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516B2	574485	broad.mit.edu	37	19	54228681	54228681	+	5'Flank	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR934	100126324	broad.mit.edu	37	X	135633062	135633063	+	RNA	DNP	GG	TT	TT			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151850040	151850040	+	Splice_Site	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL5	55904	broad.mit.edu	37	7	104681519	104681519	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118376154	118376154	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPL	4352	broad.mit.edu	37	1	43804244	43804244	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30435712	30435712	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30517088	30517088	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX4	117196	broad.mit.edu	37	11	18195254	18195254	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS22	56945	broad.mit.edu	37	3	139062765	139062765	+	5'Flank	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A3	932	broad.mit.edu	37	11	59837653	59837653	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A5	64232	broad.mit.edu	37	11	60201482	60201482	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSR1	4481	broad.mit.edu	37	8	16012544	16012544	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR12	54545	broad.mit.edu	37	5	32239198	32239198	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR14	64419	broad.mit.edu	37	3	9743548	9743548	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR4	9110	broad.mit.edu	37	17	56594070	56594070	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9011388	9011388	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9015562	9015562	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1019491	1019491	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10409183	10409183	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23869690	23869690	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL10	93408	broad.mit.edu	37	7	101259549	101259549	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109817277	109817277	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26432511	26432511	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171238469	171238469	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128377908	128377908	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72151994	72151994	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12666854	12666854	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOC	4653	broad.mit.edu	37	1	171605559	171605559	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95069778	95069778	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101762987	101762987	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101797103	101797103	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78401054	78401054	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35630283	35630283	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134072754	134072754	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCCRP1	342897	broad.mit.edu	37	19	39689847	39689847	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133539801	133539801	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDFIP1	80762	broad.mit.edu	37	5	141517532	141517532	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152553214	152553214	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD1	121441	broad.mit.edu	37	12	97334423	97334423	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21555896	21555896	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFS1	9054	broad.mit.edu	37	20	34261648	34261648	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGB	58157	broad.mit.edu	37	14	77734877	77734877	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGLY1	55768	broad.mit.edu	37	3	25760913	25760913	+	3'UTR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	37006594	37006594	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIT1	4817	broad.mit.edu	37	1	161089615	161089615	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIT2	56954	broad.mit.edu	37	3	100058772	100058772	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLE1	54475	broad.mit.edu	37	17	33463193	33463193	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5827266	5827266	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5950772	5950772	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP11	204801	broad.mit.edu	37	19	56321474	56321474	+	Silent	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54318050	54318050	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55508738	55508738	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56515383	56515383	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56549486	56549486	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56552512	56552512	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55452864	55452864	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT3	349565	broad.mit.edu	37	3	139292404	139292404	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP58	51602	broad.mit.edu	37	2	203155831	203155831	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36340396	36340396	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I2	8856	broad.mit.edu	37	3	119531736	119531736	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2E1	7101	broad.mit.edu	37	6	108501529	108501529	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2E1	7101	broad.mit.edu	37	6	108501542	108501542	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2E1	7101	broad.mit.edu	37	6	108501729	108501729	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2E1	7101	broad.mit.edu	37	6	108502260	108502260	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2F1	7025	broad.mit.edu	37	5	92923849	92923849	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107872764	107872764	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105152792	105152792	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50765550	50765550	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176721339	176721339	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88669651	88669651	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTSR1	4923	broad.mit.edu	37	20	61391394	61391394	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP98	4928	broad.mit.edu	37	11	3800040	3800040	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUTF2	10204	broad.mit.edu	37	16	67899176	67899176	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101820783	101820783	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101826397	101826397	+	RNA	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBP2B	29989	broad.mit.edu	37	9	136081907	136081907	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228437916	228437916	+	Silent	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228476641	228476641	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28234700	28234700	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102269892	102269892	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53603113	53603113	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OOEP	441161	broad.mit.edu	37	6	74083014	74083014	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123900935	123900935	+	Silent	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Z1	128368	broad.mit.edu	37	1	158576519	158576519	+	Silent	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H4	390442	broad.mit.edu	37	14	20711551	20711551	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C8	138802	broad.mit.edu	37	9	107331796	107331796	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1E1	8387	broad.mit.edu	37	17	3301516	3301516	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B6	26212	broad.mit.edu	37	6	27925169	27925169	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2J2	26707	broad.mit.edu	37	6	29141926	29141926	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248185156	248185156	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248367035	248367035	+	Missense_Mutation	SNP	C	G	G	rs143391143	byFrequency;by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T1	26696	broad.mit.edu	37	1	248569766	248569766	+	Silent	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T8	343172	broad.mit.edu	37	1	248084403	248084403	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55433325	55433325	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4F5	79501	broad.mit.edu	37	1	69516	69516	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K14	122740	broad.mit.edu	37	14	20483416	20483416	+	5'Flank	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B4	143496	broad.mit.edu	37	11	4388801	4388801	+	Missense_Mutation	SNP	G	A	A	rs139777859	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B4	143496	broad.mit.edu	37	11	4389218	4389218	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AP2	338675	broad.mit.edu	37	11	56409618	56409618	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563767	55563767	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55595398	55595398	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158517838	158517838	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8G2	26492	broad.mit.edu	37	11	124095447	124095447	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55872529	55872529	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8I2	120586	broad.mit.edu	37	11	55861056	55861056	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56125184	56125184	+	5'Flank	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24905592	24905592	+	Intron	SNP	G	A	A	rs142438268	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26684976	26684976	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29631706	29631706	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVOL2	58495	broad.mit.edu	37	20	18022289	18022289	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PA2G4	5036	broad.mit.edu	37	12	56500854	56500854	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PA2G4	5036	broad.mit.edu	37	12	56500856	56500856	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1	26986	broad.mit.edu	37	8	101721354	101721354	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR8	85315	broad.mit.edu	37	6	52268418	52268418	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATE1	160065	broad.mit.edu	37	11	125616206	125616206	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX1	5087	broad.mit.edu	37	1	164776737	164776737	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX2	5089	broad.mit.edu	37	6	32155858	32155858	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91237961	91237961	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55582806	55582806	+	Silent	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58240938	58240938	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58299211	58299211	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA9	9752	broad.mit.edu	37	5	140229258	140229259	+	Frame_Shift_Ins	INS	-	G	G	rs138948867	byFrequency	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140581362	140581362	+	Missense_Mutation	SNP	C	A	A	rs140365279	byFrequency	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140605286	140605286	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140712241	140712241	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82595810	82595811	+	Intron	INS	-	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20523218	20523218	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4C	5143	broad.mit.edu	37	19	18327622	18327622	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA2	5161	broad.mit.edu	37	4	96761628	96761628	+	Silent	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20370859	20370859	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31983777	31983777	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5L	51555	broad.mit.edu	37	3	179615932	179615932	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGA5	5222	broad.mit.edu	37	11	61018519	61018519	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	98155200	98155200	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGP	283871	broad.mit.edu	37	16	2264177	2264177	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71829592	71829592	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA2	5256	broad.mit.edu	37	X	18942367	18942367	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHYHIP	9796	broad.mit.edu	37	8	22084444	22084444	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4K2A	55361	broad.mit.edu	37	10	99344388	99344388	+	5'UTR	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204412608	204412608	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18691352	18691352	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39537431	39537431	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8792182	8792182	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209190983	209190983	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47870944	47870944	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51612545	51612545	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17052825	17052825	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD1	5337	broad.mit.edu	37	3	171377175	171377175	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204236726	204236726	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG5	57449	broad.mit.edu	37	1	6527727	6527727	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD2	5352	broad.mit.edu	37	3	145809621	145809621	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	132174109	132174109	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMVK	10654	broad.mit.edu	37	1	154901730	154901730	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNKP	11284	broad.mit.edu	37	19	50366041	50366041	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA3	80339	broad.mit.edu	37	22	44322827	44322827	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24722559	24722559	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1A	25885	broad.mit.edu	37	2	86258661	86258661	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1B	84172	broad.mit.edu	37	2	113308449	113308449	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3G	10622	broad.mit.edu	37	5	89808000	89808000	+	3'UTR	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53104216	53104216	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POPDC2	64091	broad.mit.edu	37	3	119373360	119373360	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	131976449	131976449	+	Silent	SNP	C	A	A	rs142484775		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F1	5451	broad.mit.edu	37	1	167384785	167384785	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU4F3	5459	broad.mit.edu	37	5	145719677	145719677	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIP5K2	23262	broad.mit.edu	37	5	102522093	102522093	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R10	5514	broad.mit.edu	37	6	30573623	30573623	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13B	23368	broad.mit.edu	37	14	104204993	104204993	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37535561	37535561	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2CA	5515	broad.mit.edu	37	5	133536187	133536187	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2C	5522	broad.mit.edu	37	4	6349785	6349785	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAME	23532	broad.mit.edu	37	22	22892305	22892305	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM1	639	broad.mit.edu	37	6	106554849	106554849	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23523296	23523296	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527714	23527714	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE1	144165	broad.mit.edu	37	12	42858653	42858653	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54403829	54403829	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54409934	54409934	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30108094	30108094	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48739408	48739408	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR1	10887	broad.mit.edu	37	2	68882357	68882357	+	Silent	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1584926	1584926	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS36	146547	broad.mit.edu	37	16	31155149	31155149	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43233370	43233370	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43441114	43441114	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43571247	43571247	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43585123	43585123	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43439716	43439716	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA2	5683	broad.mit.edu	37	7	42959098	42959098	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP2	58155	broad.mit.edu	37	1	97235391	97235391	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD3	55037	broad.mit.edu	37	2	86333333	86333333	+	5'UTR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH1	5727	broad.mit.edu	37	9	98268677	98268677	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPDC1	138639	broad.mit.edu	37	9	96827072	96827072	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPDC1	138639	broad.mit.edu	37	9	96827099	96827099	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	71016238	71016238	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198703582	198703582	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198721324	198721324	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8483988	8483988	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8485214	8485214	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55708441	55708441	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	8248263	8248263	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	8394505	8394505	+	Missense_Mutation	SNP	G	T	T	rs142178302	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121652008	121652008	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121681036	121681036	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS1	80324	broad.mit.edu	37	12	132426187	132426187	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXK	54899	broad.mit.edu	37	3	58389538	58389538	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9318871	9318871	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRFPR	84109	broad.mit.edu	37	4	122254246	122254246	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD23A	5886	broad.mit.edu	37	19	13063662	13063662	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD50	10111	broad.mit.edu	37	5	131939049	131939049	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178716032	178716032	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAMP3	10268	broad.mit.edu	37	7	45223038	45223038	+	3'UTR	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173898551	173898551	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178421598	178421598	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114395746	114395746	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCL1	10171	broad.mit.edu	37	9	4844500	4844500	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH16	8608	broad.mit.edu	37	12	57345786	57345786	+	3'UTR	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH16	8608	broad.mit.edu	37	12	57351181	57351181	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79312758	79312758	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL4	266747	broad.mit.edu	37	22	24040565	24040565	+	Intron	DEL	T	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGN	9104	broad.mit.edu	37	X	46949396	46949396	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGP1	9827	broad.mit.edu	37	9	35750242	35750242	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS1	5996	broad.mit.edu	37	1	192548398	192548398	+	Silent	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS21	431704	broad.mit.edu	37	1	192316479	192316479	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS9	8787	broad.mit.edu	37	17	63204048	63204048	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RILPL1	353116	broad.mit.edu	37	12	123983372	123983372	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104897965	104897965	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104922335	104922335	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK2	55781	broad.mit.edu	37	5	96518748	96518748	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE9	390443	broad.mit.edu	37	14	21025307	21025307	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30319883	30319883	+	Silent	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF186	54546	broad.mit.edu	37	1	20140898	20140898	+	3'UTR	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78351546	78351546	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF217	154214	broad.mit.edu	37	6	125402714	125402714	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79174505	79174505	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROPN1L	83853	broad.mit.edu	37	5	10449994	10449994	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77245374	77245374	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGR	6103	broad.mit.edu	37	X	38178260	38178260	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL27A	6157	broad.mit.edu	37	11	8706410	8706410	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL32P3	132241	broad.mit.edu	37	3	129112783	129112783	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS19BP1	91582	broad.mit.edu	37	22	39925559	39925559	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KB1	6198	broad.mit.edu	37	17	57991942	57991942	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78795941	78795941	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSAD2	91543	broad.mit.edu	37	2	7018038	7018038	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67718519	67718519	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92983087	92983087	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159533240	159533240	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159533309	159533309	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38976231	38976231	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237886547	237886547	+	Silent	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237893668	237893668	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947973	237947973	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33954735	33954735	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50408104	50408104	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92731848	92731848	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS2	9701	broad.mit.edu	37	22	50878211	50878211	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML2	10389	broad.mit.edu	37	X	18322987	18322987	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38738896	38738899	+	Frame_Shift_Del	DEL	AGCT	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166170198	166170198	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38622896	38622896	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167262131	167262131	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN3	79634	broad.mit.edu	37	2	175292571	175292571	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13846071	13846071	+	Silent	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83606484	83606484	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETDB1	9869	broad.mit.edu	37	1	150913870	150913870	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGOL1	151648	broad.mit.edu	37	3	20216189	20216189	+	Silent	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP4	23677	broad.mit.edu	37	2	235950275	235950275	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2A	9644	broad.mit.edu	37	10	105371294	105371294	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2A	9644	broad.mit.edu	37	10	105371326	105371326	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2A	9644	broad.mit.edu	37	10	105371479	105371479	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2A	9644	broad.mit.edu	37	10	105371489	105371489	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHBG	6462	broad.mit.edu	37	17	7536069	7536069	+	Splice_Site	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHFM1	7979	broad.mit.edu	37	7	96318259	96318259	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX	6473	broad.mit.edu	37	X	591812	591812	+	Silent	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM2	6493	broad.mit.edu	37	21	38095399	38095399	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164741463	164741463	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164785153	164785153	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKA3	221150	broad.mit.edu	37	13	21742500	21742500	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46259763	46259763	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122768942	122768942	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A1	6564	broad.mit.edu	37	13	99373969	99373969	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A12	387700	broad.mit.edu	37	10	91195875	91195875	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A3	6507	broad.mit.edu	37	5	36679975	36679975	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63057976	63057976	+	Silent	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92908474	92908475	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A19	60386	broad.mit.edu	37	17	73273565	73273565	+	Splice_Site	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A21	89874	broad.mit.edu	37	14	37153826	37153826	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A38	54977	broad.mit.edu	37	3	39431872	39431872	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A11	284129	broad.mit.edu	37	17	78225181	78225181	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128365350	128365350	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A9	10463	broad.mit.edu	37	4	42003584	42003584	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A10	57181	broad.mit.edu	37	2	196573497	196573497	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18254557	18254557	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A2	29986	broad.mit.edu	37	14	21468371	21468371	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42330780	42330780	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220501621	220501621	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A2	6524	broad.mit.edu	37	16	31495935	31495935	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A6	8884	broad.mit.edu	37	2	27425643	27425643	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A6	8884	broad.mit.edu	37	2	27426162	27426162	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A6	8884	broad.mit.edu	37	2	27427302	27427302	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A11	6538	broad.mit.edu	37	3	10974789	10974789	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A6	10479	broad.mit.edu	37	X	135126719	135126719	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	142985598	142985598	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21168786	21168786	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101774323	101774323	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164907998	164907998	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88329956	88329956	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLMAP	7871	broad.mit.edu	37	3	57908711	57908711	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAP1	60682	broad.mit.edu	37	6	71569856	71569856	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCB1	6598	broad.mit.edu	37	22	24145420	24145420	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-13	767591	broad.mit.edu	37	14	101435347	101435347	+	5'Flank	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51569535	51569535	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX19	399979	broad.mit.edu	37	11	130785061	130785061	+	Silent	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOAT1	6646	broad.mit.edu	37	1	179304777	179304777	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108923814	108923814	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106974254	106974254	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121429256	121429256	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121429285	121429285	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORT1	6272	broad.mit.edu	37	1	109860652	109860652	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOSTDC1	25928	broad.mit.edu	37	7	16504991	16504991	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16043916	16043916	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118512645	118512645	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARCL1	8404	broad.mit.edu	37	4	88400665	88400665	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA13	221178	broad.mit.edu	37	13	24852922	24852922	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE3	441272	broad.mit.edu	37	7	99913632	99913632	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35700910	35700910	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35753611	35753611	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158617372	158617372	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158650571	158650571	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65258407	65258407	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45715491	45715491	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP68	6730	broad.mit.edu	37	17	74057172	74057172	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSTR4	6754	broad.mit.edu	37	20	23016843	23016843	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52662411	52662411	+	RNA	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7	7982	broad.mit.edu	37	7	116759737	116759737	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7	7982	broad.mit.edu	37	7	116759740	116759740	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104099498	104099498	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT4	6775	broad.mit.edu	37	2	191899317	191899317	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STEAP3	55240	broad.mit.edu	37	2	120020487	120020487	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIL	6491	broad.mit.edu	37	1	47716840	47716840	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK33	65975	broad.mit.edu	37	11	8474273	8474273	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK39	27347	broad.mit.edu	37	2	169018201	169018201	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STMN2	11075	broad.mit.edu	37	8	80567105	80567105	+	Splice_Site	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74488246	74488246	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120976095	120976095	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP6	29091	broad.mit.edu	37	14	25326189	25326189	+	Intron	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1E1	6783	broad.mit.edu	37	4	70719902	70719902	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48046973	48046973	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75427582	75427582	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN3	8224	broad.mit.edu	37	22	33402347	33402347	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNCRIP	10492	broad.mit.edu	37	6	86351163	86351164	+	5'UTR	INS	-	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152552538	152552538	+	Silent	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ1	8867	broad.mit.edu	37	21	34003562	34003562	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPO2	171024	broad.mit.edu	37	4	119978565	119978565	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33535163	33535163	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAPBP	6892	broad.mit.edu	37	6	33272846	33272846	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D4	9882	broad.mit.edu	37	13	75886873	75886873	+	Splice_Site	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX20	57057	broad.mit.edu	37	7	35280503	35280503	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115120697	115120698	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152080152	152080152	+	Silent	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP11L2	255394	broad.mit.edu	37	12	106715430	106715430	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTN3	26123	broad.mit.edu	37	10	97440280	97440280	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65180521	65180521	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20859093	20859093	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56634325	56634325	+	3'UTR	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56659003	56659003	+	Missense_Mutation	SNP	G	A	A	rs142618829		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56694833	56694833	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBI	7045	broad.mit.edu	37	5	135391445	135391445	+	Missense_Mutation	SNP	G	T	T	rs114295767	by1000genomes	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92161366	92161366	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128040991	128040991	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138208560	138208560	+	Silent	SNP	A	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32499455	32499455	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	30053914	30053914	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM6SF1	53346	broad.mit.edu	37	15	83791445	83791445	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2552784	2552784	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2616682	2616682	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC4	147798	broad.mit.edu	37	19	54675826	54675826	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO4	255104	broad.mit.edu	37	1	20009735	20009735	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO6	55374	broad.mit.edu	37	5	140023223	140023223	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126128651	126128651	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129559150	129559150	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM169	92691	broad.mit.edu	37	2	216960765	216960765	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM171	134285	broad.mit.edu	37	5	72419374	72419374	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM209	84928	broad.mit.edu	37	7	129813780	129813780	+	Splice_Site	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM209	84928	broad.mit.edu	37	7	129842280	129842280	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM22	80723	broad.mit.edu	37	3	136573446	136573446	+	Silent	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM45A	55076	broad.mit.edu	37	3	100287906	100287906	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63B	55362	broad.mit.edu	37	6	44121583	44121583	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS6	164656	broad.mit.edu	37	22	37466384	37466384	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29659634	29659634	+	3'UTR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC3	160418	broad.mit.edu	37	12	88568529	88568529	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF8	943	broad.mit.edu	37	1	12164497	12164497	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIP1	10318	broad.mit.edu	37	5	150443136	150443136	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS1BP1	85456	broad.mit.edu	37	11	57067925	57067925	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS2	80351	broad.mit.edu	37	10	93596694	93596694	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3	7137	broad.mit.edu	37	19	55668917	55668917	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175092570	175092570	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577118	7577118	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM1	7168	broad.mit.edu	37	15	63363240	63363240	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10922099	10922099	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72956678	72956678	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM33	51592	broad.mit.edu	37	1	115005674	115005674	+	Intron	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM37	4591	broad.mit.edu	37	17	57157048	57157048	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55032389	55032389	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM5	85363	broad.mit.edu	37	11	5699520	5699520	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122853999	122853999	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234878259	234878259	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV2	51393	broad.mit.edu	37	17	16321065	16321065	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142627277	142627277	+	Splice_Site	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSIX	9383	broad.mit.edu	37	X	73046337	73046337	+	RNA	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPO2	222642	broad.mit.edu	37	6	41011851	41011851	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43251485	43251485	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC16	158248	broad.mit.edu	37	9	130482646	130482646	+	Missense_Mutation	SNP	G	T	T	rs137884355		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC35	9694	broad.mit.edu	37	8	109489188	109489188	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94805685	94805685	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117620448	117620448	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117620740	117620740	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117634030	117634030	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL6	284076	broad.mit.edu	37	17	46863392	46863392	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL7	79739	broad.mit.edu	37	1	84355957	84355957	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179434379	179434379	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179610805	179610805	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179611114	179611114	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179637970	179637970	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37907439	37907439	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UACA	55075	broad.mit.edu	37	15	70959204	70959204	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBC	7316	broad.mit.edu	37	12	125397084	125397084	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBC	7316	broad.mit.edu	37	12	125397091	125397091	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42633948	42633948	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT2	55757	broad.mit.edu	37	13	96505871	96505871	+	Nonsense_Mutation	SNP	C	A	A	rs143548603		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A7	54577	broad.mit.edu	37	2	234591160	234591160	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69884051	69884051	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70360959	70360959	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP18	11274	broad.mit.edu	37	22	18642967	18642967	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55637289	55637289	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78178807	78178807	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP18	51096	broad.mit.edu	37	17	49350848	49350848	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTS2	10911	broad.mit.edu	37	1	7910793	7910793	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	11159299	11159299	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43515595	43515595	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48631765	48631765	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48973487	48973487	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49104597	49104597	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49897775	49897775	+	IGR	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49897777	49897777	+	IGR	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56268585	56268585	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59025228	59025228	+	IGR	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71401543	71401543	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	82517310	82517310	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89486681	89486681	+	IGR	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	107296201	107296201	+	IGR	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	17536710	17536710	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33139893	33139893	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	37513429	37513429	+	IGR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19468717	19468717	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52754896	52754896	+	IGR	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52755508	52755508	+	IGR	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82383106	82383106	+	IGR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34787863	34787863	+	IGR	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	47119881	47119881	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32182775	32182775	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33497344	33497344	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55770400	55770400	+	IGR	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	47502280	47502280	+	IGR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	76471935	76471935	+	IGR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26232949	26232949	+	IGR	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41620017	41620017	+	IGR	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23039879	23039879	+	IGR	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	37515970	37515970	+	IGR	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51262368	51262368	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54120141	54120141	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	109046120	109046120	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	119158191	119158191	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13126136	13126136	+	IGR	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146522977	146522977	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166244952	166244952	+	IGR	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249069082	249069082	+	IGR	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	51623952	51623952	+	IGR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96913857	96913857	+	IGR	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194141859	194141859	+	IGR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194994979	194994979	+	IGR	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	20729510	20729510	+	IGR	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	222809136	222809136	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91884634	91884634	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92150446	92150446	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	66687816	66687816	+	IGR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63682702	63682702	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107060826	107060826	+	IGR	DEL	C	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154871913	154871913	+	IGR	DEL	G	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165455891	165455891	+	IGR	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23303802	23303802	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882516	29882516	+	IGR	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40998116	40998116	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41967626	41967626	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	53156333	53156333	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112647409	112647409	+	IGR	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113545306	113545306	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	138026683	138026683	+	IGR	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160134448	160134448	+	IGR	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	34187308	34187308	+	IGR	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66803381	66803381	+	IGR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	126935648	126935648	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136398979	136398979	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	159025348	159025348	+	IGR	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53255379	53255379	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54487471	54487471	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56707016	56707016	+	IGR	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63454367	63454367	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9654766	9654766	+	IGR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	139580866	139580866	+	IGR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	15664127	15664127	+	IGR	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47704409	47704409	+	IGR	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30690108	30690108	+	IGR	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	101801764	101801764	+	IGR	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106297198	106297198	+	IGR	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120337046	120337046	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	12863500	12863500	+	IGR	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	131265242	131265242	+	IGR	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134742693	134742693	+	IGR	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134774369	134774369	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134775247	134775247	+	IGR	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134775576	134775576	+	IGR	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139115284	139115284	+	IGR	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139553275	139553275	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146271129	146271129	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26179550	26179550	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	46278866	46278866	+	IGR	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79816581	79816581	+	IGR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79829125	79829125	+	IGR	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	81761977	81761977	+	IGR	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13601559	13601559	+	IGR	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108185408	108185408	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN1	8876	broad.mit.edu	37	6	133032957	133032957	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPRBP	9730	broad.mit.edu	37	3	51457358	51457358	+	Silent	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6232233	6232233	+	Intron	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAS	7454	broad.mit.edu	37	X	48547495	48547495	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP2	23558	broad.mit.edu	37	17	73851420	73851420	+	5'UTR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR44	54521	broad.mit.edu	37	X	117578279	117578279	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36550949	36550949	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37506782	37506782	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR88	126248	broad.mit.edu	37	19	33628603	33628603	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WLS	79971	broad.mit.edu	37	1	68628761	68628761	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	991215	991215	+	Silent	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK3	65267	broad.mit.edu	37	X	54319353	54319353	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK4	65266	broad.mit.edu	37	17	40948532	40948532	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108589999	108589999	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108625802	108625802	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP2	11060	broad.mit.edu	37	16	69970320	69970320	+	Silent	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XAGE3	170626	broad.mit.edu	37	X	52893798	52893798	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL2	6846	broad.mit.edu	37	1	168510326	168510326	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31570420	31570420	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31589625	31589625	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168067256	168067256	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP1	7511	broad.mit.edu	37	10	111651441	111651441	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC4	7518	broad.mit.edu	37	5	82576285	82576285	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN2	22803	broad.mit.edu	37	20	21330159	21330159	+	Intron	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167045801	167045801	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB38	253461	broad.mit.edu	37	3	141162101	141162101	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB38	253461	broad.mit.edu	37	3	141162113	141162113	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB38	253461	broad.mit.edu	37	3	141162117	141162117	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H7B	23264	broad.mit.edu	37	22	41742176	41742176	+	Silent	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC4H2	55906	broad.mit.edu	37	X	64139936	64139936	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC17	51538	broad.mit.edu	37	1	31810024	31810024	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCWPW1	55063	broad.mit.edu	37	7	100006280	100006280	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCWPW1	55063	broad.mit.edu	37	7	100016858	100016858	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC14	79683	broad.mit.edu	37	6	158014181	158014181	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77618301	77618301	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP42	132625	broad.mit.edu	37	4	188923993	188923993	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP90	146198	broad.mit.edu	37	16	68598296	68598296	+	Silent	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE1	53349	broad.mit.edu	37	14	73490891	73490891	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147130438	147130438	+	Silent	SNP	G	T	T	rs147993210		TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44797419	44797419	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM6	9204	broad.mit.edu	37	1	35485057	35485057	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF10	7556	broad.mit.edu	37	12	133732811	133732812	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF154	7710	broad.mit.edu	37	19	58213785	58213785	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF155	7711	broad.mit.edu	37	19	44496052	44496052	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF165	7718	broad.mit.edu	37	6	28056965	28056965	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF197	10168	broad.mit.edu	37	3	44688007	44688007	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF229	7772	broad.mit.edu	37	19	44933575	44933575	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF230	7773	broad.mit.edu	37	19	44513100	44513100	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF23	7571	broad.mit.edu	37	16	71482972	71482972	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF337	26152	broad.mit.edu	37	20	25655806	25655806	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF341	84905	broad.mit.edu	37	20	32332853	32332853	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF347	84671	broad.mit.edu	37	19	53644588	53644588	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF347	84671	broad.mit.edu	37	19	53644975	53644975	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF417	147687	broad.mit.edu	37	19	58420019	58420019	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF420	147923	broad.mit.edu	37	19	37618734	37618734	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF430	80264	broad.mit.edu	37	19	21239788	21239788	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF43	7594	broad.mit.edu	37	19	22001953	22001953	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57200054	57200054	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF513	130557	broad.mit.edu	37	2	27601505	27601505	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF525	170958	broad.mit.edu	37	19	53884796	53884796	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF528	84436	broad.mit.edu	37	19	52919516	52919516	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585A	199704	broad.mit.edu	37	19	37646751	37646751	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF594	84622	broad.mit.edu	37	17	5085319	5085319	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF609	23060	broad.mit.edu	37	15	64885242	64885242	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF613	79898	broad.mit.edu	37	19	52439459	52439459	+	5'UTR	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF660	285349	broad.mit.edu	37	3	44636579	44636579	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF677	342926	broad.mit.edu	37	19	53741285	53741285	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57509950	57509950	+	Translation_Start_Site	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF765	91661	broad.mit.edu	37	19	53911624	53911624	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048010	238048010	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN4	201516	broad.mit.edu	37	19	58189211	58189211	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30989079	30989079	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30928187	30928187	+	RNA	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30938442	30938442	+	RNA	SNP	T	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30946834	30946834	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30953464	30953464	+	Silent	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	31085902	31085902	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19856891	19856891	+	RNA	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22508814	22508814	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22977615	22977615	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32192613	32192613	+	RNA	SNP	T	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21731271	21731271	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23318720	23318720	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54290849	54290849	+	5'Flank	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104256454	104256454	+	5'Flank	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159375985	159375985	+	Intron	SNP	G	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56063505	56063505	+	Missense_Mutation	SNP	A	T	T	rs151255951	byFrequency	TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89327341	89327341	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89986919	89986919	+	Intron	SNP	A	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90092180	90092180	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100024001	100024001	+	Intron	SNP	C	G	G			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37860909	37860909	+	Intron	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37861255	37861255	+	Intron	SNP	G	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38407418	38407418	+	Intron	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64035144	64035144	+	RNA	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64035205	64035205	+	RNA	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64035207	64035207	+	RNA	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64035251	64035251	+	Intron	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90745976	90745976	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136066803	136066803	+	Intron	SNP	T	C	C			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	53172478	53172478	+	RNA	SNP	G	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
