Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCB4	5244	broad.mit.edu	37	7	87031499	87031499	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87031499	87031499	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100594470	100594470	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP2	23527	broad.mit.edu	37	3	195041320	195041320	+	Intron	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACD	65057	broad.mit.edu	37	16	67692098	67692102	+	Frame_Shift_Del	DEL	CGTGT	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACO1	48	broad.mit.edu	37	9	32421066	32421066	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL7B	10880	broad.mit.edu	37	9	111618088	111618088	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL7B	10880	broad.mit.edu	37	9	111618088	111618088	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM30	11085	broad.mit.edu	37	1	120438759	120438759	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM30	11085	broad.mit.edu	37	1	120438759	120438759	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106235600	106235600	+	RNA	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106758098	106758098	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106235600	106235600	+	RNA	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106758098	106758098	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33549177	33549177	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5240117	5240117	+	Intron	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5232733	5232733	+	Intron	SNP	T	C	C	rs34080754		TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5240117	5240117	+	Intron	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100588974	100588974	+	Intron	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100588974	100588974	+	Intron	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84611369	84611369	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK1	57143	broad.mit.edu	37	14	78353334	78353334	+	Intron	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131879978	131879978	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGR2	10551	broad.mit.edu	37	7	16840838	16840839	+	Intron	INS	-	AG	AG			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGR2	10551	broad.mit.edu	37	7	16840838	16840839	+	Intron	INS	-	AG	AG			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247053418	247053418	+	Intron	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247053418	247053418	+	Intron	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105414735	105414735	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105414735	105414735	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62287633	62287633	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62287633	62287633	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIDA	64853	broad.mit.edu	37	1	222867495	222867495	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIDA	64853	broad.mit.edu	37	1	222860902	222860902	+	Intron	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIDA	64853	broad.mit.edu	37	1	222867495	222867495	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH4A1	8659	broad.mit.edu	37	1	19201121	19201121	+	Intron	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH5A1	7915	broad.mit.edu	37	6	24503644	24503644	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH5A1	7915	broad.mit.edu	37	6	24503644	24503644	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1P	200420	broad.mit.edu	37	2	73898278	73898278	+	Splice_Site	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1P	200420	broad.mit.edu	37	2	73898278	73898278	+	Splice_Site	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPPL2	251	broad.mit.edu	37	2	233271581	233271581	+	5'UTR	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC11	51529	broad.mit.edu	37	17	79857813	79857813	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPTL1	9068	broad.mit.edu	37	1	178834573	178834573	+	Silent	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPTL1	9068	broad.mit.edu	37	1	178834573	178834573	+	Silent	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKLE2	23141	broad.mit.edu	37	12	133317910	133317910	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKLE2	23141	broad.mit.edu	37	12	133317912	133317912	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	74010556	74010556	+	Intron	DEL	A	-	-			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD24	170961	broad.mit.edu	37	19	4202204	4202204	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55412488	55412488	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55439661	55439661	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55412488	55412488	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55439661	55439661	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD5	63926	broad.mit.edu	37	20	10030593	10030593	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD5	63926	broad.mit.edu	37	20	10030593	10030593	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99640640	99640640	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99640640	99640640	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1G1	164	broad.mit.edu	37	16	71811581	71811581	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29398755	29398755	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP39	80728	broad.mit.edu	37	8	145763265	145763265	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP39	80728	broad.mit.edu	37	8	145763265	145763265	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135770094	135770094	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF7	8874	broad.mit.edu	37	13	111955320	111955320	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF9	23229	broad.mit.edu	37	X	62926160	62926160	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF9	23229	broad.mit.edu	37	X	62926368	62926368	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF9	23229	broad.mit.edu	37	X	62926160	62926160	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF9	23229	broad.mit.edu	37	X	62926368	62926368	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4A	5926	broad.mit.edu	37	14	58832019	58832019	+	Splice_Site	SNP	G	A	A	rs62621193		TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC9	80210	broad.mit.edu	37	2	232091519	232091519	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC9	80210	broad.mit.edu	37	2	232091519	232091519	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35835224	35835224	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35835224	35835224	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSH	347527	broad.mit.edu	37	X	2936569	2936569	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSH	347527	broad.mit.edu	37	X	2936569	2936569	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62490736	62490736	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197057403	197057403	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197057403	197057403	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77268335	77268335	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77268335	77268335	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26114361	26114361	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26114361	26114361	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26155829	26155829	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142253860	142253860	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142253860	142253860	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXIN1	8312	broad.mit.edu	37	16	364510	364510	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCOR	54880	broad.mit.edu	37	X	39932097	39932097	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCOR	54880	broad.mit.edu	37	X	39932097	39932097	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCR	613	broad.mit.edu	37	22	23631620	23631620	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND4	389206	broad.mit.edu	37	4	42127651	42127651	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND4	389206	broad.mit.edu	37	4	42127651	42127651	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112993283	112993283	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112993283	112993283	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL3	128859	broad.mit.edu	37	20	31625603	31625603	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL3	128859	broad.mit.edu	37	20	31625603	31625603	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137504237	137504237	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79978240	79978240	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79978240	79978240	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD16	118663	broad.mit.edu	37	10	124050533	124050533	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD16	118663	broad.mit.edu	37	10	124050533	124050533	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD7	55727	broad.mit.edu	37	14	93755061	93755061	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD7	55727	broad.mit.edu	37	14	93755061	93755061	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUB1B	701	broad.mit.edu	37	15	40505762	40505762	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUB1B	701	broad.mit.edu	37	15	40505762	40505762	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf118	55088	broad.mit.edu	37	10	115884853	115884853	+	3'UTR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf68	83638	broad.mit.edu	37	11	65685409	65685409	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf68	83638	broad.mit.edu	37	11	65685409	65685409	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf166B	145497	broad.mit.edu	37	14	77332323	77332323	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf68	80169	broad.mit.edu	37	17	8136414	8136414	+	Intron	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30672694	30672694	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34677938	34677938	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34684499	34684499	+	3'UTR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34677938	34677938	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9496207	9496207	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9496207	9496207	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf151	140893	broad.mit.edu	37	20	60990964	60990964	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	45947472	45947472	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD2	25966	broad.mit.edu	37	21	43327743	43327743	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26667141	26667141	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26667141	26667141	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf56	441108	broad.mit.edu	37	5	131822192	131822192	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf3	84909	broad.mit.edu	37	9	97554921	97554921	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181719572	181719572	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81662148	81662148	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81662148	81662148	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG5	27091	broad.mit.edu	37	17	64873682	64873682	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG5	27091	broad.mit.edu	37	17	64873682	64873682	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93108925	93108925	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPS	828	broad.mit.edu	37	19	5915081	5915081	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	122002991	122002991	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	122002991	122002991	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER2	117155	broad.mit.edu	37	15	43924304	43924304	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER4	378807	broad.mit.edu	37	1	26524436	26524436	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER4	378807	broad.mit.edu	37	1	26524436	26524436	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1A	54862	broad.mit.edu	37	19	14029592	14029592	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1B	200014	broad.mit.edu	37	1	52821603	52821603	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC102B	79839	broad.mit.edu	37	18	66564797	66564797	+	Intron	SNP	T	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC158	339965	broad.mit.edu	37	4	77266308	77266308	+	Intron	SNP	A	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC158	339965	broad.mit.edu	37	4	77266308	77266308	+	Intron	SNP	A	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC56	28958	broad.mit.edu	37	17	40948054	40948054	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC56	28958	broad.mit.edu	37	17	40948054	40948054	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55563913	55563913	+	Silent	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55563913	55563913	+	Silent	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158152847	158152847	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158152847	158152847	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22078833	22078833	+	5'UTR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22078833	22078833	+	5'UTR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73544768	73544768	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM5	1048	broad.mit.edu	37	19	42225165	42225165	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM7	1087	broad.mit.edu	37	19	42191008	42191009	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM7	1087	broad.mit.edu	37	19	42191008	42191009	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP110	11064	broad.mit.edu	37	9	123920082	123920082	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP110	11064	broad.mit.edu	37	9	123920082	123920082	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117265522	117265522	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117265522	117265522	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFTR	1080	broad.mit.edu	37	7	117232483	117232483	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFTR	1080	broad.mit.edu	37	7	117232483	117232483	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB4	1143	broad.mit.edu	37	15	78921890	78921890	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB4	1143	broad.mit.edu	37	15	78921890	78921890	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87026102	87026102	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87026102	87026102	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAS	55907	broad.mit.edu	37	12	22214192	22214192	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAS	55907	broad.mit.edu	37	12	22214192	22214192	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1445202	1445202	+	3'UTR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121222151	121222151	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121222151	121222151	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105791909	105791909	+	3'UTR	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70745666	70745666	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70894706	70894706	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70894706	70894706	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139642846	139642846	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139737684	139737684	+	Splice_Site	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139642846	139642846	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139737684	139737684	+	Splice_Site	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86512537	86512537	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86512537	86512537	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110851020	110851021	+	Intron	INS	-	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110851020	110851021	+	Intron	INS	-	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130285781	130285781	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130285781	130285781	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70964920	70964920	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70964920	70964920	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160269080	160269080	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX10	1352	broad.mit.edu	37	17	14095188	14095188	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130025716	130025716	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE5	57699	broad.mit.edu	37	6	36759766	36759766	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE5	57699	broad.mit.edu	37	6	36759766	36759766	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPOX	1371	broad.mit.edu	37	3	98311879	98311879	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2779633	2779634	+	Intron	DNP	AG	GC	GC			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2779633	2779634	+	Intron	DNP	AG	GC	GC			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L3	84699	broad.mit.edu	37	19	4154888	4154888	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L3	84699	broad.mit.edu	37	19	4154888	4154888	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28534647	28534647	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28534647	28534647	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR2	1395	broad.mit.edu	37	7	30693085	30693085	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR2	1395	broad.mit.edu	37	7	30693085	30693085	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF1R	1436	broad.mit.edu	37	5	149449602	149449602	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF1R	1436	broad.mit.edu	37	5	149449602	149449602	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4645154	4645154	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4645154	4645154	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN2	1447	broad.mit.edu	37	4	70823356	70823356	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN2	1447	broad.mit.edu	37	4	70823356	70823356	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCF	10664	broad.mit.edu	37	16	67662413	67662413	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCF	10664	broad.mit.edu	37	16	67663408	67663408	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCF	10664	broad.mit.edu	37	16	67662413	67662413	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCF	10664	broad.mit.edu	37	16	67663408	67663408	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSD	1509	broad.mit.edu	37	11	1782765	1782765	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTN	2017	broad.mit.edu	37	11	70281077	70281077	+	Intron	DEL	G	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43152465	43152465	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43152465	43152465	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111779890	111779890	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111779890	111779890	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36089896	36089896	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36089896	36089896	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYSLTR2	57105	broad.mit.edu	37	13	49281203	49281203	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYSLTR2	57105	broad.mit.edu	37	13	49281203	49281203	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57536492	57536492	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58514811	58514811	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125298619	125298619	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125298619	125298619	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCT	1638	broad.mit.edu	37	13	95112521	95112521	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCT	1638	broad.mit.edu	37	13	95112521	95112521	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D3	123879	broad.mit.edu	37	16	20873933	20873933	+	5'UTR	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D3	123879	broad.mit.edu	37	16	20873933	20873933	+	5'UTR	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI2	84301	broad.mit.edu	37	1	15978402	15978403	+	Intron	DNP	GG	TT	TT			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI2	84301	broad.mit.edu	37	1	15978402	15978403	+	Intron	DNP	GG	TT	TT			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX11	1663	broad.mit.edu	37	12	31249876	31249876	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX11	1663	broad.mit.edu	37	12	31249876	31249876	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1	55635	broad.mit.edu	37	1	68962534	68962534	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1	55635	broad.mit.edu	37	1	68962534	68962534	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS7B	25979	broad.mit.edu	37	17	21094259	21094259	+	Splice_Site	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX32	55760	broad.mit.edu	37	10	127526745	127526745	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX32	55760	broad.mit.edu	37	10	127526745	127526745	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1581080	1581080	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1581080	1581080	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32717136	32717136	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32717136	32717136	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7681838	7681838	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11656186	11656186	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11656186	11656186	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNPEP	23549	broad.mit.edu	37	2	220246019	220246019	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154379590	154379590	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154379590	154379590	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113858242	113858242	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113858242	113858242	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32405141	32405142	+	Intron	INS	-	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32446130	32446130	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32446130	32446130	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNB	1838	broad.mit.edu	37	2	25656673	25656673	+	Intron	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167096659	167096659	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167096659	167096659	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96274626	96274626	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96274626	96274626	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F8	79733	broad.mit.edu	37	11	19247269	19247269	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F8	79733	broad.mit.edu	37	11	19247269	19247269	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDEM2	55741	broad.mit.edu	37	20	33714148	33714148	+	Missense_Mutation	SNP	C	A	A	rs148170838	byFrequency;by1000genomes	TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDEM2	55741	broad.mit.edu	37	20	33714148	33714148	+	Missense_Mutation	SNP	C	A	A	rs148170838	byFrequency;by1000genomes	TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN1	1906	broad.mit.edu	37	6	12294678	12294678	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN1	1906	broad.mit.edu	37	6	12294678	12294678	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44028081	44028081	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44028081	44028081	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC1	114327	broad.mit.edu	37	6	52334359	52334359	+	Intron	SNP	A	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21212859	21212859	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML4	27436	broad.mit.edu	37	2	42396829	42396829	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111434800	111434800	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111434800	111434800	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132514758	132514758	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132514758	132514758	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC8	1161	broad.mit.edu	37	5	60195590	60195590	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC8	1161	broad.mit.edu	37	5	60195590	60195590	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT1	2131	broad.mit.edu	37	8	118812003	118812004	+	Frame_Shift_Ins	INS	-	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT1	2131	broad.mit.edu	37	8	118812003	118812004	+	Frame_Shift_Ins	INS	-	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57319095	57319095	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57319095	57319095	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57515387	57515388	+	3'UTR	DEL	TG	-	-			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM196A	642938	broad.mit.edu	37	10	128936079	128936079	+	3'UTR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM196A	642938	broad.mit.edu	37	10	128973999	128973999	+	Missense_Mutation	SNP	C	A	A	rs142627987	byFrequency	TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM196A	642938	broad.mit.edu	37	10	128936079	128936079	+	3'UTR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177250096	177250097	+	Frame_Shift_Ins	INS	-	C	C	rs142394323	by1000genomes	TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190423996	190423996	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190423996	190423996	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71F1	84691	broad.mit.edu	37	7	128357114	128357114	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71F1	84691	broad.mit.edu	37	7	128357114	128357114	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126240206	126240206	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126240206	126240206	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127653769	127653769	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL21	26223	broad.mit.edu	37	5	135273223	135273223	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO22	26263	broad.mit.edu	37	15	76205682	76205682	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157771827	157771827	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157771827	157771827	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125324200	125324200	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGL1	2267	broad.mit.edu	37	8	17722223	17722223	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGL1	2267	broad.mit.edu	37	8	17722223	17722223	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58110122	58110122	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58110122	58110122	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLOT2	2319	broad.mit.edu	37	17	27209238	27209238	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLOT2	2319	broad.mit.edu	37	17	27209238	27209238	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLRT2	23768	broad.mit.edu	37	14	86089492	86089492	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLRT2	23768	broad.mit.edu	37	14	86089492	86089492	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240370817	240370817	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240370817	240370817	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159644719	159644719	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLR3	2352	broad.mit.edu	37	11	71847263	71847263	+	Intron	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP3	50943	broad.mit.edu	37	X	49108150	49108150	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP3	50943	broad.mit.edu	37	X	49108150	49108150	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29632817	29632817	+	Intron	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108288194	108288194	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108288194	108288194	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUBP1	8880	broad.mit.edu	37	1	78430042	78430042	+	Splice_Site	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUBP1	8880	broad.mit.edu	37	1	78430042	78430042	+	Splice_Site	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD10	11211	broad.mit.edu	37	12	130648791	130648791	+	Frame_Shift_Del	DEL	A	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD3	7976	broad.mit.edu	37	8	28385432	28385432	+	Silent	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD3	7976	broad.mit.edu	37	8	28385432	28385432	+	Silent	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46312156	46312156	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46312156	46312156	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89891759	89891759	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89894939	89894939	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89891759	89891759	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89894939	89894939	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE1	2543	broad.mit.edu	37	X	49360848	49360848	+	5'Flank	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155306968	155306968	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155306968	155306968	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCC2	9648	broad.mit.edu	37	2	109113750	109113750	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCLC	2729	broad.mit.edu	37	6	53374114	53374114	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCLC	2729	broad.mit.edu	37	6	53374114	53374114	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK5	256356	broad.mit.edu	37	3	141900397	141900397	+	Silent	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK5	256356	broad.mit.edu	37	3	141900397	141900397	+	Silent	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GKAP1	80318	broad.mit.edu	37	9	86399774	86399774	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GKAP1	80318	broad.mit.edu	37	9	86399774	86399774	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIPR2	152007	broad.mit.edu	37	9	36162380	36162380	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIPR2	152007	broad.mit.edu	37	9	36162380	36162380	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8DP	100132979	broad.mit.edu	37	15	22709902	22709902	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR123	84435	broad.mit.edu	37	10	134916303	134916303	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB10	2887	broad.mit.edu	37	7	50742267	50742267	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB10	2887	broad.mit.edu	37	7	50742267	50742267	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87484054	87484054	+	Intron	SNP	A	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	88123668	88123668	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87484054	87484054	+	Intron	SNP	A	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	88123668	88123668	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94316699	94316699	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94316699	94316699	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88258686	88258686	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88258686	88258686	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYLTL1B	120071	broad.mit.edu	37	11	45945664	45945664	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFRP3	50810	broad.mit.edu	37	15	83826167	83826167	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFRP3	50810	broad.mit.edu	37	15	83826167	83826167	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65483612	65483612	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65483612	65483612	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28544753	28544753	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGSNAT	138050	broad.mit.edu	37	8	43033147	43033147	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHATL	57467	broad.mit.edu	37	3	42739015	42739015	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHATL	57467	broad.mit.edu	37	3	42739015	42739015	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100123170	100123170	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DPB1	3115	broad.mit.edu	37	6	33053644	33053644	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100807622	100807622	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSF2	3298	broad.mit.edu	37	6	122752545	122752545	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	114141816	114141816	+	Silent	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	114141816	114141816	+	Silent	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53562502	53562502	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53562502	53562502	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53581722	53581722	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNGR1	3459	broad.mit.edu	37	6	137519214	137519214	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNGR1	3459	broad.mit.edu	37	6	137519214	137519214	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC3	9543	broad.mit.edu	37	15	65625667	65625667	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF8	93185	broad.mit.edu	37	1	160062028	160062028	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF8	93185	broad.mit.edu	37	1	160062028	160062028	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IHH	3549	broad.mit.edu	37	2	219922285	219922285	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKB	3551	broad.mit.edu	37	8	42178306	42178306	+	Silent	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81592014	81592015	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81592014	81592015	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35871034	35871034	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBC	3626	broad.mit.edu	37	12	57843212	57843212	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBC	3626	broad.mit.edu	37	12	57843212	57843212	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS2	57508	broad.mit.edu	37	17	60002319	60002319	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS2	57508	broad.mit.edu	37	17	60002319	60002319	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO7	10527	broad.mit.edu	37	11	9463643	9463643	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO7	10527	broad.mit.edu	37	11	9463643	9463643	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCB1	9657	broad.mit.edu	37	3	121547859	121547859	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCB1	9657	broad.mit.edu	37	3	121547859	121547859	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75989204	75989204	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75989204	75989204	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK4	51135	broad.mit.edu	37	12	44180315	44180315	+	Silent	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK4	51135	broad.mit.edu	37	12	44180315	44180315	+	Silent	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF2	3660	broad.mit.edu	37	4	185310048	185310048	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182395440	182395440	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182395440	182395440	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15599968	15599968	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15599968	15599968	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31392355	31392355	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24538101	24538101	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24538101	24538101	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39921347	39921347	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39921347	39921347	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111146525	111146525	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111146525	111146525	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63246645	63246645	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63246645	63246645	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD13	253980	broad.mit.edu	37	16	29918494	29918494	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD18	130535	broad.mit.edu	37	2	201369696	201369696	+	Intron	SNP	A	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10610279	10610279	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10610279	10610279	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142641424	142641424	+	Missense_Mutation	SNP	G	T	T	rs61729050		TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142641424	142641424	+	Missense_Mutation	SNP	G	T	T	rs61729050		TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1024	23251	broad.mit.edu	37	15	79750731	79750731	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1024	23251	broad.mit.edu	37	15	79750731	79750731	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123249356	123249356	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118220652	118220652	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118220652	118220652	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1609	57707	broad.mit.edu	37	16	84514302	84514303	+	Frame_Shift_Ins	INS	-	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13B	23303	broad.mit.edu	37	8	29035078	29035078	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13B	23303	broad.mit.edu	37	8	29035078	29035078	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF9	64147	broad.mit.edu	37	3	47288896	47288896	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF9	64147	broad.mit.edu	37	3	47288896	47288896	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRF1	51348	broad.mit.edu	37	12	9995128	9995128	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP21-1	337977	broad.mit.edu	37	21	32127722	32127722	+	5'Flank	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP21-1	337977	broad.mit.edu	37	21	32127722	32127722	+	5'Flank	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR2	3904	broad.mit.edu	37	19	55014926	55014926	+	Silent	SNP	G	T	T	rs151276812		TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR2	3904	broad.mit.edu	37	19	55014926	55014926	+	Silent	SNP	G	T	T	rs151276812		TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS3	204219	broad.mit.edu	37	15	101020170	101020170	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS3	204219	broad.mit.edu	37	15	101020170	101020170	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN1	3933	broad.mit.edu	37	9	138415808	138415808	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN2	3934	broad.mit.edu	37	9	130911883	130911883	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN2	3934	broad.mit.edu	37	9	130911883	130911883	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	36250716	36250716	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	36250716	36250716	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LECT1	11061	broad.mit.edu	37	13	53298303	53298303	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LECT1	11061	broad.mit.edu	37	13	53298303	53298303	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9C	654346	broad.mit.edu	37	17	18393832	18393832	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC220429	220429	broad.mit.edu	37	13	50466803	50466803	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC220429	220429	broad.mit.edu	37	13	50466803	50466803	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC387646	387646	broad.mit.edu	37	10	27538888	27538888	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC387646	387646	broad.mit.edu	37	10	27538888	27538888	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727924	727924	broad.mit.edu	37	15	22297853	22297853	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727924	727924	broad.mit.edu	37	15	22297853	22297853	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728989	728989	broad.mit.edu	37	1	146494719	146494719	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728989	728989	broad.mit.edu	37	1	146494752	146494752	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161022092	161022092	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161022092	161022092	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62641148	62641148	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR5	163404	broad.mit.edu	37	1	99418685	99418685	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR5	163404	broad.mit.edu	37	1	99418685	99418685	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133827983	133827983	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133827983	133827983	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC28	123355	broad.mit.edu	37	15	99799093	99799093	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC28	123355	broad.mit.edu	37	15	99799093	99799093	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40136265	40136265	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40136265	40136265	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33488394	33488394	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33488394	33488394	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY86	9450	broad.mit.edu	37	6	6625306	6625306	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE1	57692	broad.mit.edu	37	X	75650121	75650121	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE1	57692	broad.mit.edu	37	X	75650121	75650121	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAK	4117	broad.mit.edu	37	6	10791901	10791901	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAK	4117	broad.mit.edu	37	6	10791901	10791901	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65270829	65270830	+	RNA	INS	-	GA	GA			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1B1	11253	broad.mit.edu	37	9	139997751	139997752	+	Intron	DEL	TT	-	-	rs72469431		TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K6	9064	broad.mit.edu	37	1	27687193	27687193	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARVELD3	91862	broad.mit.edu	37	16	71668441	71668442	+	Frame_Shift_Ins	INS	-	G	G	rs150498655	byFrequency;by1000genomes	TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN2	4147	broad.mit.edu	37	8	99019468	99019468	+	Intron	SNP	G	T	T	rs56951352	by1000genomes	TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN2	4147	broad.mit.edu	37	8	99019468	99019468	+	Intron	SNP	G	T	T	rs56951352	by1000genomes	TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC5R	4161	broad.mit.edu	37	18	13826463	13826463	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC5R	4161	broad.mit.edu	37	18	13826463	13826463	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168812877	168812877	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168812877	168812877	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEF2D	4209	broad.mit.edu	37	1	156444816	156444816	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEF2D	4209	broad.mit.edu	37	1	156444816	156444816	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42042472	42042472	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKNK1	8569	broad.mit.edu	37	1	47030909	47030909	+	Intron	DEL	C	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23811566	23811566	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158817840	158817841	+	Intron	DNP	CA	TT	TT			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRS2	57380	broad.mit.edu	37	6	24416899	24416899	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTA3	57504	broad.mit.edu	37	2	42934969	42934969	+	Intron	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTA3	57504	broad.mit.edu	37	2	42934969	42934969	+	Intron	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9046706	9046706	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9061615	9061615	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9089295	9089295	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9046706	9046706	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9061615	9061615	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9089295	9089295	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUTYH	4595	broad.mit.edu	37	1	45795184	45795184	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUTYH	4595	broad.mit.edu	37	1	45795184	45795184	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10357299	10357299	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10357299	10357299	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23857979	23857979	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NACA	4666	broad.mit.edu	37	12	57114346	57114346	+	Intron	DEL	A	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NACA	4666	broad.mit.edu	37	12	57114346	57114346	+	Intron	DEL	A	-	-			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101755531	101755531	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101910743	101910743	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101755531	101755531	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101910743	101910743	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145578607	145578607	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16908280	16908280	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120384102	120384102	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120384102	120384102	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST2	8509	broad.mit.edu	37	10	75567627	75567627	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115898299	115898299	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115898299	115898299	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130881250	130881250	+	Splice_Site	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130881250	130881250	+	Splice_Site	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70417550	70417550	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70417550	70417550	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHS	4810	broad.mit.edu	37	X	17743354	17743355	+	Intron	INS	-	A	A	rs10712155		TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIT1	4817	broad.mit.edu	37	1	161088936	161088937	+	Missense_Mutation	DNP	GG	TT	TT	rs144963228	byFrequency	TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIT1	4817	broad.mit.edu	37	1	161088936	161088937	+	Missense_Mutation	DNP	GG	TT	TT	rs144963228	byFrequency	TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5420971	5420971	+	Intron	SNP	T	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56467169	56467169	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56467169	56467169	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO1	23420	broad.mit.edu	37	16	14982998	14982998	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO1	23420	broad.mit.edu	37	16	14982998	14982998	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32187987	32187987	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32187987	32187987	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX1	27035	broad.mit.edu	37	X	100125757	100125760	+	Frame_Shift_Del	DEL	AGGA	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX1	27035	broad.mit.edu	37	X	100125757	100125760	+	Frame_Shift_Del	DEL	AGGA	-	-			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPNT	255743	broad.mit.edu	37	4	106863785	106863785	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPNT	255743	broad.mit.edu	37	4	106863785	106863785	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107808728	107808728	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107808728	107808728	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64389989	64389989	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64419493	64419493	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64419493	64419493	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210	23225	broad.mit.edu	37	3	13427851	13427851	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210	23225	broad.mit.edu	37	3	13427851	13427851	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24885288	24885288	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24885288	24885288	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28228719	28228719	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGFOD2	79676	broad.mit.edu	37	12	123463132	123463132	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN1SW	611	broad.mit.edu	37	7	128415864	128415864	+	5'Flank	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A3	26496	broad.mit.edu	37	11	7960520	7960520	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10W1	81341	broad.mit.edu	37	11	58035114	58035114	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10W1	81341	broad.mit.edu	37	11	58035114	58035114	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR12D2	26529	broad.mit.edu	37	6	29364990	29364990	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR12D2	26529	broad.mit.edu	37	6	29364990	29364990	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A5	393046	broad.mit.edu	37	7	143748277	143748277	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A5	393046	broad.mit.edu	37	7	143748277	143748277	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2D3	120775	broad.mit.edu	37	11	6942199	6942199	+	5'Flank	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2D3	120775	broad.mit.edu	37	11	6942199	6942199	+	5'Flank	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T2	401992	broad.mit.edu	37	1	248616371	248616371	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T2	401992	broad.mit.edu	37	1	248616371	248616371	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248551067	248551067	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248551409	248551409	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248551067	248551067	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248551409	248551409	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A47	403253	broad.mit.edu	37	11	48510590	48510590	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A47	403253	broad.mit.edu	37	11	48510590	48510590	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55406314	55406314	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N2	390077	broad.mit.edu	37	11	5841641	5841641	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N2	390077	broad.mit.edu	37	11	5841641	5841641	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AP2	338675	broad.mit.edu	37	11	56409316	56409316	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AP2	338675	broad.mit.edu	37	11	56409316	56409316	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D13	390142	broad.mit.edu	37	11	55540902	55540902	+	5'Flank	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761412	55761412	+	Silent	SNP	C	G	G	rs144082157	byFrequency	TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761412	55761412	+	Silent	SNP	C	G	G	rs144082157	byFrequency	TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6F1	343169	broad.mit.edu	37	1	247875730	247875730	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6F1	343169	broad.mit.edu	37	1	247875730	247875730	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K6	128371	broad.mit.edu	37	1	158724748	158724748	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K6	128371	broad.mit.edu	37	1	158724748	158724748	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158517962	158517962	+	5'Flank	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158517962	158517962	+	5'Flank	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL6	114880	broad.mit.edu	37	2	179226621	179226621	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOL1	131149	broad.mit.edu	37	3	161221085	161221085	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7B	56957	broad.mit.edu	37	1	149919055	149919055	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXCT1	5019	broad.mit.edu	37	5	41850324	41850324	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXCT1	5019	broad.mit.edu	37	5	41850324	41850324	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17563741	17563741	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17563741	17563741	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17664702	17664702	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17664702	17664702	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAFAH1B2	5049	broad.mit.edu	37	11	117038323	117038323	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAFAH1B2	5049	broad.mit.edu	37	11	117038323	117038323	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9561009	9561009	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9561009	9561009	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAN2	9924	broad.mit.edu	37	12	56720127	56720127	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAN2	9924	broad.mit.edu	37	12	56720127	56720127	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPLN	89932	broad.mit.edu	37	14	73725989	73725989	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPLN	89932	broad.mit.edu	37	14	73725989	73725989	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR5	54852	broad.mit.edu	37	15	69696180	69696180	+	3'UTR	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX1	5075	broad.mit.edu	37	20	21695369	21695369	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP2	5094	broad.mit.edu	37	12	53853102	53853102	+	Missense_Mutation	SNP	C	T	T	rs111807426		TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP2	5094	broad.mit.edu	37	12	53853102	53853102	+	Missense_Mutation	SNP	C	T	T	rs111807426		TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91132563	91132563	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91132563	91132563	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55839046	55839046	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58299497	58299497	+	3'UTR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140531692	140531692	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140531692	140531692	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140719632	140719632	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140719632	140719632	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56137217	56137217	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56137217	56137217	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142606648	142606648	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78772069	78772069	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165846423	165846423	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165846423	165846423	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7A	5150	broad.mit.edu	37	8	66635829	66635829	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70177370	70177370	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70177370	70177370	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX16	9409	broad.mit.edu	37	11	45935823	45935823	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB1	5207	broad.mit.edu	37	X	54964098	54964098	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM1	5236	broad.mit.edu	37	1	64088954	64088954	+	Intron	SNP	A	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58342383	58342384	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58342383	58342384	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF16	9767	broad.mit.edu	37	X	46918161	46918161	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF16	9767	broad.mit.edu	37	X	46918161	46918161	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133823374	133823374	+	Splice_Site	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133823374	133823374	+	Splice_Site	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71813132	71813132	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71813132	71813132	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KA	5297	broad.mit.edu	37	22	21084157	21084158	+	Intron	DNP	CC	AA	AA			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KA	5297	broad.mit.edu	37	22	21084157	21084158	+	Intron	DNP	CC	AA	AA			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106524542	106524542	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106524542	106524542	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81155282	81155282	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8862361	8862361	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8862361	8862361	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	145001143	145001143	+	Splice_Site	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	145001150	145001150	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHO2	80301	broad.mit.edu	37	15	65153785	65153785	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLGLA	285189	broad.mit.edu	37	2	107004078	107004078	+	RNA	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLGLA	285189	broad.mit.edu	37	2	107004078	107004078	+	RNA	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB1	5364	broad.mit.edu	37	3	48457786	48457786	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB3	5365	broad.mit.edu	37	X	153040091	153040091	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84606415	84606415	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84606415	84606415	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24722656	24722656	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121207151	121207151	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3B	55703	broad.mit.edu	37	12	106821053	106821053	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3B	55703	broad.mit.edu	37	12	106821053	106821053	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3E	55718	broad.mit.edu	37	16	22314477	22314477	+	Intron	SNP	A	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POR	5447	broad.mit.edu	37	7	75573147	75573147	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POR	5447	broad.mit.edu	37	7	75573160	75573160	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POR	5447	broad.mit.edu	37	7	75573193	75573193	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POR	5447	broad.mit.edu	37	7	75573147	75573147	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POR	5447	broad.mit.edu	37	7	75573160	75573160	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POR	5447	broad.mit.edu	37	7	75573193	75573193	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81660978	81660978	+	Intron	DEL	T	-	-	rs71822940		TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R15B	84919	broad.mit.edu	37	1	204375279	204375279	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R15B	84919	broad.mit.edu	37	1	204375279	204375279	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PQLC3	130814	broad.mit.edu	37	2	11312012	11312012	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PQLC3	130814	broad.mit.edu	37	2	11312012	11312012	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35072726	35072726	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35072726	35072726	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT10	90826	broad.mit.edu	37	4	148575784	148575784	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF18	8559	broad.mit.edu	37	10	13655795	13655795	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF18	8559	broad.mit.edu	37	10	13655795	13655795	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43237391	43237391	+	Intron	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11562047	11562047	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11562977	11562977	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11562977	11562977	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	71003525	71003526	+	Intron	DEL	TT	-	-	rs35267294		TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	9425588	9425589	+	Intron	INS	-	ACTT	ACTT	rs147870208	by1000genomes	TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157475536	157475536	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157475536	157475536	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220159874	220159874	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40730953	40730953	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40735577	40735577	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40730953	40730953	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40735577	40735577	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29633588	29633588	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYCRL	65263	broad.mit.edu	37	8	144689140	144689140	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB8A	4218	broad.mit.edu	37	19	16232381	16232381	+	Intron	DEL	G	-	-	rs112005697		TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALA	5898	broad.mit.edu	37	7	39730128	39730128	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALA	5898	broad.mit.edu	37	7	39730128	39730128	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALY	22913	broad.mit.edu	37	20	32665071	32665071	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARS2	57038	broad.mit.edu	37	6	88228554	88228554	+	Silent	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARS2	57038	broad.mit.edu	37	6	88228554	88228554	+	Silent	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA1	5921	broad.mit.edu	37	5	86672763	86672763	+	Silent	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA1	5921	broad.mit.edu	37	5	86672763	86672763	+	Silent	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1B	153020	broad.mit.edu	37	4	82354942	82354942	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1B	153020	broad.mit.edu	37	4	82354942	82354942	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79265681	79265681	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47044719	47044719	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMS2	5939	broad.mit.edu	37	12	56963712	56963712	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMS2	5939	broad.mit.edu	37	12	56963712	56963712	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP4	5950	broad.mit.edu	37	10	95353812	95353812	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP4	5950	broad.mit.edu	37	10	95353812	95353812	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79363870	79363870	+	RNA	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS21	431704	broad.mit.edu	37	1	192321385	192321385	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS21	431704	broad.mit.edu	37	1	192321385	192321385	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHCE	6006	broad.mit.edu	37	1	25701816	25701816	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPK1	8737	broad.mit.edu	37	6	3105762	3105762	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPK1	8737	broad.mit.edu	37	6	3105762	3105762	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	88012857	88012857	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RND1	27289	broad.mit.edu	37	12	49258689	49258689	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF150	57484	broad.mit.edu	37	4	141888839	141888839	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF150	57484	broad.mit.edu	37	4	141888839	141888839	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79174740	79174740	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79174740	79174740	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL14	9045	broad.mit.edu	37	3	40498768	40498768	+	5'Flank	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	178999425	178999425	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237819276	237819276	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237819276	237819276	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237843959	237843959	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33945030	33945030	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34028578	34028578	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34034668	34034668	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33927742	33927742	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33945030	33945030	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34028578	34028578	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR3	1903	broad.mit.edu	37	9	91617197	91617197	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR3	1903	broad.mit.edu	37	9	91617197	91617197	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23915491	23915491	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23915491	23915491	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134988395	134988395	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134988395	134988395	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATL1	340562	broad.mit.edu	37	X	84362715	84362715	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATL1	340562	broad.mit.edu	37	X	84362715	84362715	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	9917584	9917584	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	9917584	9917584	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCARA3	51435	broad.mit.edu	37	8	27507371	27507371	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165969467	165969467	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165969467	165969467	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3B	55800	broad.mit.edu	37	11	123508905	123508905	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3B	55800	broad.mit.edu	37	11	123508905	123508905	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61A2	55176	broad.mit.edu	37	10	12185280	12185280	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61A2	55176	broad.mit.edu	37	10	12185280	12185280	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4A	64218	broad.mit.edu	37	1	156126349	156126349	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4A	64218	broad.mit.edu	37	1	156126349	156126349	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT10	151011	broad.mit.edu	37	2	110303922	110303922	+	Intron	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT10	151011	broad.mit.edu	37	2	110303922	110303922	+	Intron	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA12	145264	broad.mit.edu	37	14	94964180	94964180	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA12	145264	broad.mit.edu	37	14	94964180	94964180	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95034546	95034546	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95034546	95034546	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167164213	167164213	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167164213	167164213	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26690378	26690378	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26769422	26769422	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26690378	26690378	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26769422	26769422	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS6	6431	broad.mit.edu	37	20	42088919	42088919	+	Intron	SNP	T	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232574993	232574993	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232596628	232596628	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232574993	232574993	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232596628	232596628	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP2	8935	broad.mit.edu	37	7	27023021	27023021	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP2	8935	broad.mit.edu	37	7	27023021	27023021	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160582251	160582251	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF6	114836	broad.mit.edu	37	1	160458828	160458828	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF6	114836	broad.mit.edu	37	1	160458828	160458828	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100787146	100787146	+	Splice_Site	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100787197	100787197	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100787146	100787146	+	Splice_Site	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100787197	100787197	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119026199	119026199	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119026199	119026199	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC20A2	6575	broad.mit.edu	37	8	42287590	42287590	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC20A2	6575	broad.mit.edu	37	8	42287590	42287590	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A9	115019	broad.mit.edu	37	1	205897047	205897047	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A9	115019	broad.mit.edu	37	1	205897047	205897047	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC29A4	222962	broad.mit.edu	37	7	5338634	5338634	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A3	285641	broad.mit.edu	37	5	150656993	150656993	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A3	285641	broad.mit.edu	37	5	150656993	150656993	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1201699	1201699	+	5'Flank	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20657998	20657998	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20657998	20657998	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A5	6553	broad.mit.edu	37	16	67290781	67290781	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	142985602	142985602	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	142985602	142985602	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101834578	101834578	+	5'UTR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101834578	101834578	+	5'UTR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK6	84189	broad.mit.edu	37	13	86369995	86369995	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18881188	18881188	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18881188	18881188	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-39	100033813	broad.mit.edu	37	15	25486828	25486828	+	5'Flank	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP200	23020	broad.mit.edu	37	2	96954407	96954407	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP200	23020	broad.mit.edu	37	2	96954407	96954407	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25213283	25213283	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX18	112574	broad.mit.edu	37	5	53814755	53814755	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX9	51429	broad.mit.edu	37	6	158317937	158317937	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOD2	6648	broad.mit.edu	37	6	160103667	160103667	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOD2	6648	broad.mit.edu	37	6	160103667	160103667	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	15994629	15994629	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16036456	16036456	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	15994629	15994629	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16036456	16036456	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142803635	142803635	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142803635	142803635	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45801726	45801726	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45801726	45801726	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52654063	52654063	+	RNA	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52654063	52654063	+	RNA	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107423373	107423373	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48818791	48818791	+	Splice_Site	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48818791	48818791	+	Splice_Site	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74473361	74473361	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74473361	74473361	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152534964	152534964	+	Intron	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152685919	152685919	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152949423	152949423	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152534964	152534964	+	Intron	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152685919	152685919	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152949423	152949423	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNRG	11276	broad.mit.edu	37	17	35913989	35913989	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4	6874	broad.mit.edu	37	20	60575248	60575248	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4	6874	broad.mit.edu	37	20	60575248	60575248	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGLN3	29114	broad.mit.edu	37	3	111732248	111732248	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGLN3	29114	broad.mit.edu	37	3	111732248	111732248	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL2	26608	broad.mit.edu	37	7	72987318	72987318	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL2	26608	broad.mit.edu	37	7	72987318	72987318	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114804095	114804095	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114804095	114804095	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179562935	179562935	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179562935	179562935	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20854173	20854173	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEG	51298	broad.mit.edu	37	19	374030	374030	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEM4	117145	broad.mit.edu	37	1	151847170	151847170	+	3'UTR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70344664	70344664	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70344664	70344664	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166960625	166960625	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126137133	126137133	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126137133	126137133	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM146	257062	broad.mit.edu	37	19	5776096	5776096	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM149	79713	broad.mit.edu	37	19	36236382	36236382	+	5'Flank	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM184A	202915	broad.mit.edu	37	7	1590517	1590517	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM55B	90809	broad.mit.edu	37	14	20927981	20927981	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117803262	117803262	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117803262	117803262	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF10A	8797	broad.mit.edu	37	8	23058164	23058164	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF10A	8797	broad.mit.edu	37	8	23058164	23058164	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6A	27327	broad.mit.edu	37	16	24834793	24834793	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175325510	175325510	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175325510	175325510	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32052275	32052275	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32052275	32052275	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN2	219931	broad.mit.edu	37	11	68844365	68844365	+	Intron	SNP	C	A	A	rs143130325	by1000genomes	TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10909785	10909785	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10944861	10944861	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	11014888	11014888	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP2	10758	broad.mit.edu	37	6	111913163	111913163	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP2	10758	broad.mit.edu	37	6	111913163	111913163	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM11	81559	broad.mit.edu	37	1	228584677	228584677	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM11	81559	broad.mit.edu	37	1	228584677	228584677	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248020633	248020633	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM60	166655	broad.mit.edu	37	4	165961194	165961194	+	Intron	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC7	57113	broad.mit.edu	37	5	135692319	135692319	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31362381	31362381	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31362381	31362381	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV4	59341	broad.mit.edu	37	12	110224614	110224614	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC29	83894	broad.mit.edu	37	4	147796051	147796051	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC29	83894	broad.mit.edu	37	4	147628706	147628706	+	Intron	DEL	A	-	-			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC29	83894	broad.mit.edu	37	4	147796051	147796051	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNRD2	10587	broad.mit.edu	37	22	19864788	19864788	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72300207	72300207	+	5'Flank	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10132493	10132494	+	Intron	INS	-	T	T	rs34652791		TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN4	56893	broad.mit.edu	37	1	156013769	156013769	+	Intron	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103266711	103266711	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103266711	103266711	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN10	127733	broad.mit.edu	37	1	20517245	20517245	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN10	127733	broad.mit.edu	37	1	20517245	20517245	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCP3	7352	broad.mit.edu	37	11	73712393	73712393	+	3'UTR	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCP3	7352	broad.mit.edu	37	11	73712393	73712393	+	3'UTR	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70355072	70355072	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70355072	70355072	+	Intron	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20352502	20352502	+	Silent	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20352502	20352502	+	Silent	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35608274	35608274	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35608274	35608274	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF1	5976	broad.mit.edu	37	19	18974437	18974437	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216380820	216380820	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216258077	216258077	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216373476	216373477	+	Intron	INS	-	A	A	rs80029092		TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216380820	216380820	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP11	8237	broad.mit.edu	37	X	47099947	47099947	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP11	8237	broad.mit.edu	37	X	47099947	47099947	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP18	51096	broad.mit.edu	37	17	49350592	49350592	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP18	51096	broad.mit.edu	37	17	49357467	49357467	+	Splice_Site	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP18	51096	broad.mit.edu	37	17	49357467	49357467	+	Splice_Site	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	125751547	125751547	+	IGR	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	130262726	130262726	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	79493897	79493897	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8662434	8662434	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122848314	122848314	+	IGR	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27505493	27505493	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56216925	56216925	+	IGR	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56268381	56268381	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59480210	59480210	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38423416	38423416	+	IGR	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43954849	43954849	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	64216263	64216264	+	IGR	INS	-	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	72229068	72229068	+	IGR	SNP	T	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19807224	19807224	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20146673	20146673	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147700	20147700	+	IGR	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21631739	21631739	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50087799	50087799	+	IGR	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	27144859	27144859	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32490241	32490241	+	IGR	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76269236	76269236	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	58639448	58639448	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15165428	15165431	+	IGR	DEL	ACAA	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	1928693	1928693	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	27878967	27878967	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22486631	22486631	+	IGR	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106240648	106240648	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146583567	146583567	+	IGR	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189960572	189960572	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216150	192216150	+	IGR	DEL	C	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242936155	242936155	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	92540482	92540482	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53691623	53691623	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14823947	14823947	+	IGR	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	39551980	39551980	+	IGR	DEL	C	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133020763	133020763	+	IGR	SNP	T	C	C	rs2871712		TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162360899	162360899	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	195052420	195052420	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210044011	210044011	+	IGR	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83446290	83446290	+	IGR	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91944248	91944248	+	IGR	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	113847470	113847470	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76484403	76484403	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82856960	82856960	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88997470	88997470	+	IGR	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165577387	165577387	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65297178	65297178	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	115387790	115387790	+	IGR	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	57457582	57457582	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	67455257	67455257	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97912887	97912887	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28937887	28937887	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49927929	49927929	+	IGR	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80775049	80775050	+	IGR	DNP	GG	TT	TT			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80778817	80778817	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144737571	144737571	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56244000	56244000	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	120493380	120493380	+	IGR	SNP	T	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	23340982	23340982	+	IGR	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47507734	47507734	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47884537	47884537	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48012896	48012896	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	41306238	41306238	+	IGR	DEL	G	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155215542	155215542	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26705759	26705759	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37402553	37402553	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52632887	52632887	+	IGR	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38184598	38184598	+	IGR	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38989963	38989963	+	IGR	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	79493897	79493897	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8662434	8662434	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122848314	122848314	+	IGR	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124386764	124386764	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27505493	27505493	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5253995	5253995	+	IGR	SNP	C	A	A	rs35324967		TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55494031	55494031	+	IGR	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56216925	56216925	+	IGR	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56268381	56268381	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38423416	38423416	+	IGR	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	72229068	72229068	+	IGR	SNP	T	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90644096	90644096	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19807224	19807224	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147700	20147700	+	IGR	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21631739	21631739	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	24219327	24219327	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	27210595	27210595	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50087799	50087799	+	IGR	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	27144859	27144859	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34493802	34493802	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34571119	34571119	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76269236	76269236	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	58639448	58639448	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14629863	14629863	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	1928693	1928693	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	27878967	27878967	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22486631	22486631	+	IGR	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	39727929	39727929	+	IGR	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	46955676	46955676	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106240648	106240648	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	118092260	118092260	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146583567	146583567	+	IGR	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158850584	158850584	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189960572	189960572	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216150	192216150	+	IGR	DEL	C	-	-			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242936155	242936155	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	46894797	46894797	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	92540482	92540482	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53691623	53691623	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53969083	53969083	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181634	11181634	+	IGR	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14823947	14823947	+	IGR	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132357614	132357614	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162360899	162360899	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	176881859	176881859	+	IGR	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210044011	210044011	+	IGR	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58478836	58478836	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	103257812	103257812	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	113847470	113847470	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	46353355	46353355	+	IGR	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74150759	74150759	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76484403	76484403	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82856960	82856960	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88997470	88997470	+	IGR	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	154580394	154580394	+	IGR	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165577387	165577387	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	166469163	166469163	+	IGR	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65297178	65297178	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	115387790	115387790	+	IGR	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	57457582	57457582	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	60039944	60039944	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	67455257	67455257	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97912887	97912887	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28937887	28937887	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49927929	49927929	+	IGR	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	75560210	75560210	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80775049	80775050	+	IGR	DNP	GG	TT	TT			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80778817	80778817	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144737571	144737571	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	120493380	120493380	+	IGR	SNP	T	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	23340982	23340982	+	IGR	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34732097	34732097	+	IGR	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47507734	47507734	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47884537	47884537	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	41306238	41306238	+	IGR	DEL	G	-	-			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43165246	43165246	+	IGR	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26705759	26705759	+	IGR	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37402553	37402553	+	IGR	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45240898	45240898	+	IGR	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101186128	101186128	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101186128	101186128	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79968311	79968311	+	Intron	SNP	T	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100169005	100169005	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100169005	100169005	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS36	51028	broad.mit.edu	37	13	53016600	53016600	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98797775	98797775	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71130353	71130353	+	Intron	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71130353	71130353	+	Intron	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT7B	7477	broad.mit.edu	37	22	46319087	46319087	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YLPM1	56252	broad.mit.edu	37	14	75265706	75265706	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YLPM1	56252	broad.mit.edu	37	14	75265919	75265919	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135740865	135740865	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135740865	135740865	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46619113	46619113	+	Silent	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46619113	46619113	+	Silent	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HAV1	56829	broad.mit.edu	37	7	138739782	138739782	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC15	158866	broad.mit.edu	37	X	74598833	74598833	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77618186	77618186	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77690667	77690667	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77618186	77618186	+	Silent	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77690667	77690667	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC3	7547	broad.mit.edu	37	X	136649500	136649500	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC3	7547	broad.mit.edu	37	X	136649500	136649500	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF165	7718	broad.mit.edu	37	6	28056964	28056964	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF165	7718	broad.mit.edu	37	6	28056964	28056964	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF251	90987	broad.mit.edu	37	8	145948533	145948533	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF251	90987	broad.mit.edu	37	8	145948533	145948533	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22817160	22817160	+	5'UTR	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22817160	22817160	+	5'UTR	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF527	84503	broad.mit.edu	37	19	37880895	37880895	+	3'UTR	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF566	84924	broad.mit.edu	37	19	36963641	36963641	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF713	349075	broad.mit.edu	37	7	55980501	55980501	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF766	90321	broad.mit.edu	37	19	52794388	52794388	+	Silent	SNP	T	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF766	90321	broad.mit.edu	37	19	52794388	52794388	+	Silent	SNP	T	C	C			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF777	27153	broad.mit.edu	37	7	149153030	149153030	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF777	27153	broad.mit.edu	37	7	149153030	149153030	+	Silent	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF835	90485	broad.mit.edu	37	19	57176423	57176423	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF835	90485	broad.mit.edu	37	19	57176423	57176423	+	Silent	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30930520	30930520	+	RNA	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22181052	22181053	+	RNA	DEL	CT	-	-			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102318401	102318401	+	5'Flank	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	46709953	46709953	+	5'Flank	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15885044	15885044	+	Intron	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22782118	22782118	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104260732	104260732	+	Splice_Site	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	129285	129285	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89310107	89310107	+	Intron	SNP	G	C	C			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	18364785	18364785	+	5'Flank	SNP	A	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471247	142471247	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30930520	30930520	+	RNA	SNP	C	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	69078730	69078730	+	Intron	SNP	A	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22181052	22181053	+	RNA	DEL	CT	-	-			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102318401	102318401	+	5'Flank	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	28899432	28899432	+	RNA	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	46709953	46709953	+	5'Flank	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22782118	22782118	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104260732	104260732	+	Splice_Site	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	43073290	43073290	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	18364785	18364785	+	5'Flank	SNP	A	G	G			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471247	142471247	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143185794	143185794	+	Intron	SNP	G	A	A			TCGA-44-2655-01A-01W-0928-08	TCGA-44-2655-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17118052	17118052	+	Intron	SNP	G	T	T			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17119520	17119520	+	RNA	SNP	C	A	A			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
