Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A4GNT	51146	broad.mit.edu	37	3	137843529	137843529	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A4GNT	51146	broad.mit.edu	37	3	137843529	137843529	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87144598	87144598	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87179275	87179275	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87179931	87179931	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87144598	87144598	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87179275	87179275	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87179931	87179931	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87046857	87046857	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87046857	87046857	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB7	22	broad.mit.edu	37	X	74273349	74273349	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB7	22	broad.mit.edu	37	X	74273349	74273349	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB9	23457	broad.mit.edu	37	12	123444365	123444365	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB9	23457	broad.mit.edu	37	12	123444365	123444365	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48201621	48201621	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48201621	48201621	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17414710	17414710	+	Intron	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17414710	17414710	+	Intron	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG1	9619	broad.mit.edu	37	21	43702588	43702588	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG1	9619	broad.mit.edu	37	21	43702588	43702588	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM1	3983	broad.mit.edu	37	10	116197683	116197683	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM1	3983	broad.mit.edu	37	10	116197683	116197683	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABR	29	broad.mit.edu	37	17	953256	953256	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABR	29	broad.mit.edu	37	17	953256	953256	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109696582	109696582	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109696582	109696582	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN2	41	broad.mit.edu	37	12	50471085	50471085	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN2	41	broad.mit.edu	37	12	50471085	50471085	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61568578	61568578	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61568578	61568578	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS3	79611	broad.mit.edu	37	12	81503198	81503198	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS3	79611	broad.mit.edu	37	12	81503198	81503198	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR3	10096	broad.mit.edu	37	2	114697476	114697476	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR3	10096	broad.mit.edu	37	2	114697476	114697476	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT2	140625	broad.mit.edu	37	1	2938177	2938177	+	5'UTR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT2	140625	broad.mit.edu	37	1	2938177	2938177	+	5'UTR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106714239	106714240	+	Intron	DEL	AC	-	-	rs112875057		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106725103	106725103	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106745643	106745643	+	RNA	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106877817	106877819	+	RNA	DEL	ACT	-	-	rs113800876		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106962882	106962882	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107022461	107022461	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106725103	106725103	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106745643	106745643	+	RNA	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106962882	106962882	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107022461	107022461	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136319481	136319481	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136319481	136319481	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5146362	5146362	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5146362	5146362	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28210696	28210696	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28210696	28210696	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS4	9507	broad.mit.edu	37	1	161161242	161161242	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS4	9507	broad.mit.edu	37	1	161161242	161161242	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS7	11173	broad.mit.edu	37	15	79063993	79063993	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS7	11173	broad.mit.edu	37	15	79063993	79063993	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84659818	84659818	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84659818	84659818	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK4	79934	broad.mit.edu	37	19	41216077	41216077	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK4	79934	broad.mit.edu	37	19	41216077	41216077	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45744158	45744158	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45744158	45744158	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123071497	123071497	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123071497	123071497	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1B	125	broad.mit.edu	37	4	100239987	100239987	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1B	125	broad.mit.edu	37	4	100239987	100239987	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH6	130	broad.mit.edu	37	4	100129927	100129927	+	Silent	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148037249	148037249	+	Silent	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148037249	148037249	+	Silent	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGGF1	55109	broad.mit.edu	37	5	76330360	76330360	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGGF1	55109	broad.mit.edu	37	5	76330360	76330360	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT4	56895	broad.mit.edu	37	6	161575121	161575121	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT4	56895	broad.mit.edu	37	6	161575121	161575121	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT6	137964	broad.mit.edu	37	8	41456966	41456966	+	Intron	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT9	84803	broad.mit.edu	37	4	84515881	84515881	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT9	84803	broad.mit.edu	37	4	84515881	84515881	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62284435	62284435	+	Silent	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62284435	62284435	+	Silent	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP12	9590	broad.mit.edu	37	6	151669913	151669913	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP12	9590	broad.mit.edu	37	6	151669913	151669913	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNAD1	254268	broad.mit.edu	37	1	109395169	109395169	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNAD1	254268	broad.mit.edu	37	1	109395169	109395169	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNA	80709	broad.mit.edu	37	9	117104101	117104101	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNA	80709	broad.mit.edu	37	9	117104101	117104101	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALLC	55821	broad.mit.edu	37	2	3750170	3750170	+	3'UTR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALLC	55821	broad.mit.edu	37	2	3750170	3750170	+	3'UTR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113277791	113277791	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113277791	113277791	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK3	57538	broad.mit.edu	37	15	85399864	85399864	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK3	57538	broad.mit.edu	37	15	85399864	85399864	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC4	29945	broad.mit.edu	37	4	25379027	25379027	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC4	29945	broad.mit.edu	37	4	25379027	25379027	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114153431	114153431	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114153431	114153431	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241421494	241421494	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241421494	241421494	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY2	57037	broad.mit.edu	37	7	16664555	16664555	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY2	57037	broad.mit.edu	37	7	16664555	16664555	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37415025	37415025	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14809944	14809945	+	Intron	DNP	GG	TT	TT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14809944	14809945	+	Intron	DNP	GG	TT	TT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99640694	99640694	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99640694	99640694	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANUBL1	93550	broad.mit.edu	37	10	46119970	46119970	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANUBL1	93550	broad.mit.edu	37	10	46119970	46119970	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3G	60489	broad.mit.edu	37	22	39477646	39477646	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3G	60489	broad.mit.edu	37	22	39477646	39477646	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21255418	21255419	+	Missense_Mutation	DNP	TG	GT	GT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21255418	21255419	+	Missense_Mutation	DNP	TG	GT	GT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOL2	23780	broad.mit.edu	37	22	36624459	36624462	+	Intron	DEL	AATT	-	-	rs5995263	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAF	369	broad.mit.edu	37	X	47426121	47426121	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAF	369	broad.mit.edu	37	X	47426121	47426121	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP1	55738	broad.mit.edu	37	20	61907501	61907501	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP1	55738	broad.mit.edu	37	20	61907501	61907501	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP2	84364	broad.mit.edu	37	11	47192879	47192879	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP2	84364	broad.mit.edu	37	11	47192879	47192879	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36271365	36271365	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36271365	36271365	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130220349	130220349	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130220349	130220349	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF17	9828	broad.mit.edu	37	11	73071333	73071333	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF17	9828	broad.mit.edu	37	11	73071333	73071333	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155921320	155921320	+	Missense_Mutation	SNP	G	A	A	rs138090439	byFrequency	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155921320	155921320	+	Missense_Mutation	SNP	G	A	A	rs138090439	byFrequency	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46245363	46245363	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46245363	46245363	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5A	10865	broad.mit.edu	37	2	97215628	97215628	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5A	10865	broad.mit.edu	37	2	97217674	97217674	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5A	10865	broad.mit.edu	37	2	97215628	97215628	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5A	10865	broad.mit.edu	37	2	97217674	97217674	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC2	84071	broad.mit.edu	37	6	109225654	109225654	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC2	84071	broad.mit.edu	37	6	109225654	109225654	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARR3	407	broad.mit.edu	37	X	69489779	69489779	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARR3	407	broad.mit.edu	37	X	69489779	69489779	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	2999163	2999163	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	2999163	2999163	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSH	347527	broad.mit.edu	37	X	2936546	2936546	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSH	347527	broad.mit.edu	37	X	2936546	2936546	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB15	142685	broad.mit.edu	37	7	123254559	123254559	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB15	142685	broad.mit.edu	37	7	123254559	123254559	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1755382	1755382	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1755382	1755382	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPN	54829	broad.mit.edu	37	9	95221790	95221790	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPN	54829	broad.mit.edu	37	9	95221790	95221790	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177001817	177001817	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177001817	177001817	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATL1	51062	broad.mit.edu	37	14	51058280	51058280	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATL1	51062	broad.mit.edu	37	14	51058280	51058280	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113527887	113527887	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113527887	113527887	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138880817	138880817	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138880817	138880817	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160156218	160156218	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160156218	160156218	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77276691	77276691	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77276691	77276691	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVPR1A	552	broad.mit.edu	37	12	63544585	63544585	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVPR1A	552	broad.mit.edu	37	12	63544585	63544585	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT6	9331	broad.mit.edu	37	18	29206276	29206276	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT6	9331	broad.mit.edu	37	18	29206276	29206276	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11038686	11038686	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11098888	11098888	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11038686	11038686	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11098888	11098888	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70034795	70034795	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70034795	70034795	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31597577	31597577	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31597577	31597577	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT3	7917	broad.mit.edu	37	6	31612763	31612763	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT3	7917	broad.mit.edu	37	6	31612763	31612763	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN2	51411	broad.mit.edu	37	12	51685619	51685619	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN2	51411	broad.mit.edu	37	12	51685619	51685619	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP10	27302	broad.mit.edu	37	2	69093486	69093486	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP10	27302	broad.mit.edu	37	2	69093486	69093486	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP5	653	broad.mit.edu	37	6	55638990	55638990	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMX	660	broad.mit.edu	37	X	15574391	15574391	+	3'UTR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMX	660	broad.mit.edu	37	X	15527334	15527334	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMX	660	broad.mit.edu	37	X	15574391	15574391	+	3'UTR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOLA1	51027	broad.mit.edu	37	1	149871771	149871771	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOLA1	51027	broad.mit.edu	37	1	149871771	149871771	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137488440	137488440	+	Missense_Mutation	SNP	C	G	G	rs148605042	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137488440	137488440	+	Missense_Mutation	SNP	C	G	G	rs148605042	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRPF3	27154	broad.mit.edu	37	6	36198206	36198206	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRPF3	27154	broad.mit.edu	37	6	36198206	36198206	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK1	84446	broad.mit.edu	37	19	55816254	55816254	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK1	84446	broad.mit.edu	37	19	55816254	55816254	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK2	9024	broad.mit.edu	37	11	1466162	1466162	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK2	9024	broad.mit.edu	37	11	1466162	1466162	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSND	7809	broad.mit.edu	37	1	55474212	55474212	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSND	7809	broad.mit.edu	37	1	55474212	55474212	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD3	22903	broad.mit.edu	37	20	11903469	11903469	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD3	22903	broad.mit.edu	37	20	11903469	11903469	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL3	10917	broad.mit.edu	37	5	180416006	180416006	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL3	10917	broad.mit.edu	37	5	180416006	180416006	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf12	26148	broad.mit.edu	37	10	98741739	98741739	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf12	26148	broad.mit.edu	37	10	98741739	98741739	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf66	220004	broad.mit.edu	37	11	61252259	61252259	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf66	220004	broad.mit.edu	37	11	61252259	61252259	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27058465	27058465	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27058465	27058465	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112743792	112743792	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112743792	112743792	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf18	80183	broad.mit.edu	37	13	46942988	46942988	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf18	80183	broad.mit.edu	37	13	46942988	46942988	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf115	55237	broad.mit.edu	37	14	74824588	74824588	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf115	55237	broad.mit.edu	37	14	74824588	74824588	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf138	79609	broad.mit.edu	37	14	50583010	50583010	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf138	79609	broad.mit.edu	37	14	50583010	50583010	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921196	24921196	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921196	24921196	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf55	124045	broad.mit.edu	37	16	89724600	89724600	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf55	124045	broad.mit.edu	37	16	89724600	89724600	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf68	79091	broad.mit.edu	37	16	8738322	8738322	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf76	388341	broad.mit.edu	37	17	16347377	16347377	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf76	388341	broad.mit.edu	37	17	16347377	16347377	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QB	713	broad.mit.edu	37	1	22986035	22986035	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QB	713	broad.mit.edu	37	1	22986035	22986035	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57209875	57209875	+	Silent	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57219534	57219534	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57209875	57209875	+	Silent	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57219534	57219534	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf186	440712	broad.mit.edu	37	1	206239421	206239421	+	Silent	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf186	440712	broad.mit.edu	37	1	206239421	206239421	+	Silent	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf132	140699	broad.mit.edu	37	20	35737068	35737068	+	Splice_Site	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf132	140699	broad.mit.edu	37	20	35737068	35737068	+	Splice_Site	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf20	55257	broad.mit.edu	37	20	61430122	61430122	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf20	55257	broad.mit.edu	37	20	61430122	61430122	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20270909	20270909	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20270909	20270909	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf34	388815	broad.mit.edu	37	21	17443329	17443329	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf34	388815	broad.mit.edu	37	21	17443329	17443329	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf51	200523	broad.mit.edu	37	2	88825280	88825280	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf51	200523	broad.mit.edu	37	2	88825280	88825280	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf71	646450	broad.mit.edu	37	3	48955706	48955706	+	3'UTR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf71	646450	broad.mit.edu	37	3	48955706	48955706	+	3'UTR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113506721	113506721	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113506721	113506721	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf32	132720	broad.mit.edu	37	4	113092700	113092700	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf32	132720	broad.mit.edu	37	4	113092700	113092700	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf36	132989	broad.mit.edu	37	4	87808958	87808958	+	Silent	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf36	132989	broad.mit.edu	37	4	87808958	87808958	+	Silent	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf50	389197	broad.mit.edu	37	4	5969071	5969071	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf50	389197	broad.mit.edu	37	4	5977785	5977785	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf50	389197	broad.mit.edu	37	4	5969071	5969071	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf50	389197	broad.mit.edu	37	4	5977785	5977785	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf51	646603	broad.mit.edu	37	4	146601435	146601435	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf51	646603	broad.mit.edu	37	4	146601435	146601435	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf34	375444	broad.mit.edu	37	5	43495262	43495262	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf34	375444	broad.mit.edu	37	5	43495262	43495262	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf97	80129	broad.mit.edu	37	6	151865941	151865941	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf97	80129	broad.mit.edu	37	6	151865941	151865941	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69434011	69434011	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69434011	69434011	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13563581	13563581	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13563581	13563581	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181741180	181741180	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181741180	181741180	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49063289	49063289	+	Silent	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49063289	49063289	+	Silent	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40055839	40055839	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40055839	40055839	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76834940	76834940	+	3'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76834940	76834940	+	3'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD14	79092	broad.mit.edu	37	17	78165189	78165189	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD14	79092	broad.mit.edu	37	17	78165189	78165189	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104936891	104936891	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104936891	104936891	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55028256	55028256	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55028256	55028256	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER1	117144	broad.mit.edu	37	11	65790348	65790348	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER1	117144	broad.mit.edu	37	11	65790348	65790348	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92047504	92047504	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92047504	92047504	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAT	847	broad.mit.edu	37	11	34478335	34478335	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAT	847	broad.mit.edu	37	11	34478335	34478335	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105439130	105439130	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105439130	105439130	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN2	147381	broad.mit.edu	37	18	70205991	70205992	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN2	147381	broad.mit.edu	37	18	70205991	70205992	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBL	867	broad.mit.edu	37	11	119169118	119169118	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBE1	147372	broad.mit.edu	37	18	57122238	57122238	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBE1	147372	broad.mit.edu	37	18	57122238	57122238	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBP2	1238	broad.mit.edu	37	3	42931455	42931455	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBP2	1238	broad.mit.edu	37	3	42931455	42931455	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219896345	219896345	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219896345	219896345	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92979091	92979091	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92979091	92979091	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128454628	128454628	+	Intron	SNP	C	A	A	rs146608527	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128454628	128454628	+	Intron	SNP	C	A	A	rs146608527	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC146	57639	broad.mit.edu	37	7	76891577	76891577	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC146	57639	broad.mit.edu	37	7	76891577	76891577	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC33	80125	broad.mit.edu	37	15	74560506	74560506	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC33	80125	broad.mit.edu	37	15	74560506	74560506	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC47	57003	broad.mit.edu	37	17	61842180	61842180	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC47	57003	broad.mit.edu	37	17	61842180	61842180	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC54	84692	broad.mit.edu	37	3	107096514	107096514	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC54	84692	broad.mit.edu	37	3	107096514	107096514	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7556500	7556500	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7556500	7556500	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD180	4064	broad.mit.edu	37	5	66492491	66492491	+	5'UTR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD180	4064	broad.mit.edu	37	5	66492491	66492491	+	5'UTR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158300979	158300979	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158300979	158300979	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158325255	158325255	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158325255	158325255	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35822411	35822411	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40LG	959	broad.mit.edu	37	X	135730584	135730585	+	Intron	DNP	TT	AC	AC			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40LG	959	broad.mit.edu	37	X	135730584	135730585	+	Intron	DNP	TT	AC	AC			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD96	10225	broad.mit.edu	37	3	111343207	111343207	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD96	10225	broad.mit.edu	37	3	111343207	111343207	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC23	8697	broad.mit.edu	37	5	137527306	137527306	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC23	8697	broad.mit.edu	37	5	137527308	137527308	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC23	8697	broad.mit.edu	37	5	137527306	137527306	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC23	8697	broad.mit.edu	37	5	137527308	137527308	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24491831	24491831	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24491831	24491831	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883647	21883648	+	Intron	DNP	GG	CT	CT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883647	21883648	+	Intron	DNP	GG	CT	CT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73574861	73574861	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73437176	73437176	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73537413	73537413	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73574861	73574861	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61851398	61851398	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61851398	61851398	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26881265	26881265	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26881265	26881265	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR3	10878	broad.mit.edu	37	1	196757589	196757589	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR3	10878	broad.mit.edu	37	1	196757589	196757589	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196621179	196621179	+	5'UTR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196621179	196621179	+	5'UTR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6181341	6181341	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6215656	6215656	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6181341	6181341	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6215656	6215656	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21870599	21870599	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21870599	21870599	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	440019	440019	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	440019	440019	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA1	1134	broad.mit.edu	37	2	175618559	175618559	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRND	1144	broad.mit.edu	37	2	233393557	233393557	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRND	1144	broad.mit.edu	37	2	233393557	233393557	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNG	1146	broad.mit.edu	37	2	233406069	233406069	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNG	1146	broad.mit.edu	37	2	233406069	233406069	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP2	148113	broad.mit.edu	37	19	19655874	19655874	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP2	148113	broad.mit.edu	37	19	19655874	19655874	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46837632	46837633	+	Intron	DEL	CA	-	-	rs59649961		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA1	1179	broad.mit.edu	37	1	86954871	86954871	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA1	1179	broad.mit.edu	37	1	86954871	86954871	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87012771	87012771	+	5'UTR	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87012771	87012771	+	5'UTR	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCNKA	1187	broad.mit.edu	37	1	16355272	16355272	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCNKA	1187	broad.mit.edu	37	1	16355272	16355272	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC12B	387837	broad.mit.edu	37	12	10168296	10168296	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC12B	387837	broad.mit.edu	37	12	10168296	10168296	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN3	1201	broad.mit.edu	37	16	28488846	28488846	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN3	1201	broad.mit.edu	37	16	28500080	28500080	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN3	1201	broad.mit.edu	37	16	28488846	28488846	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN3	1201	broad.mit.edu	37	16	28500080	28500080	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLNK	116449	broad.mit.edu	37	4	10492234	10492234	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLNK	116449	broad.mit.edu	37	4	10492234	10492234	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN1	7401	broad.mit.edu	37	3	150645698	150645698	+	3'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN1	7401	broad.mit.edu	37	3	150645698	150645698	+	3'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN1	22883	broad.mit.edu	37	1	9801204	9801204	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN1	22883	broad.mit.edu	37	1	9801204	9801204	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62212572	62212572	+	Silent	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62212572	62212572	+	Silent	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAH	8418	broad.mit.edu	37	6	25141637	25141637	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAH	8418	broad.mit.edu	37	6	25141637	25141637	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41337888	41337888	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41337888	41337888	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99932110	99932110	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99932110	99932110	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146818215	146818215	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146818215	146818215	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125660630	125660630	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG6	57511	broad.mit.edu	37	13	40297660	40297660	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG6	57511	broad.mit.edu	37	13	40297660	40297660	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103463891	103463891	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103463891	103463891	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101814853	101814853	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101814853	101814853	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70778228	70778228	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70778228	70778228	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94035084	94035084	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94035084	94035084	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109841671	109841671	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109895672	109895672	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109841671	109841671	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109895672	109895672	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111132690	111132690	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111132690	111132690	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107842032	107842032	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107842032	107842032	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107414541	107414541	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107422549	107422549	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107414541	107414541	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107422549	107422549	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238266452	238266452	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238266452	238266452	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130284512	130284512	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48619815	48619815	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48619815	48619815	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148586769	148586769	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148586769	148586769	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166325426	166325426	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166325426	166325426	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE2	221184	broad.mit.edu	37	16	57147136	57147136	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE2	221184	broad.mit.edu	37	16	57147136	57147136	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPO	130749	broad.mit.edu	37	2	207804187	207804187	+	5'Flank	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPO	130749	broad.mit.edu	37	2	207804187	207804187	+	5'Flank	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211527847	211527847	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211527847	211527847	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145619310	145619310	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145619310	145619310	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2777425	2777425	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2777425	2777425	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRY2	1408	broad.mit.edu	37	11	45892361	45892361	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRY2	1408	broad.mit.edu	37	11	45892361	45892361	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB2	1415	broad.mit.edu	37	22	25617281	25617281	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB2	1415	broad.mit.edu	37	22	25617281	25617281	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGC	1420	broad.mit.edu	37	2	208994632	208994632	+	5'Flank	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGC	1420	broad.mit.edu	37	2	208994632	208994632	+	5'Flank	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYZL1	9946	broad.mit.edu	37	21	34968212	34968212	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYZL1	9946	broad.mit.edu	37	21	34968212	34968212	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2855596	2855596	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2855596	2855596	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34257917	34257917	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34257917	34257917	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113331980	113331980	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113331980	113331980	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113565052	113565052	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN2	1447	broad.mit.edu	37	4	70823420	70823420	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN2	1447	broad.mit.edu	37	4	70823420	70823420	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST2	1470	broad.mit.edu	37	20	23805992	23805992	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST2	1470	broad.mit.edu	37	20	23805992	23805992	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT45A5	441521	broad.mit.edu	37	X	134947928	134947928	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT45A5	441521	broad.mit.edu	37	X	134947928	134947928	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11018034	11018034	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11018034	11018034	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL7	9820	broad.mit.edu	37	6	43020118	43020118	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL7	9820	broad.mit.edu	37	6	43020118	43020118	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL12	6387	broad.mit.edu	37	10	44873999	44873999	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL12	6387	broad.mit.edu	37	10	44873999	44873999	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf56	63932	broad.mit.edu	37	X	118673720	118673720	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf56	63932	broad.mit.edu	37	X	118673720	118673720	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf57	55086	broad.mit.edu	37	X	105882611	105882611	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf57	55086	broad.mit.edu	37	X	105882611	105882611	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36156456	36156456	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36156456	36156456	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf66	347487	broad.mit.edu	37	X	139038299	139038299	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26A1	1592	broad.mit.edu	37	10	94834513	94834513	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26A1	1592	broad.mit.edu	37	10	94834513	94834513	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27A1	1593	broad.mit.edu	37	2	219679287	219679287	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27A1	1593	broad.mit.edu	37	2	219679287	219679287	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15790985	15790985	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15790985	15790985	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTSA	23384	broad.mit.edu	37	22	24808752	24808752	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTSA	23384	broad.mit.edu	37	22	24808752	24808752	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTSB	92521	broad.mit.edu	37	17	20000193	20000193	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTSB	92521	broad.mit.edu	37	17	20000193	20000193	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYYR1	116159	broad.mit.edu	37	21	27945240	27945240	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYYR1	116159	broad.mit.edu	37	21	27945240	27945240	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
D2HGDH	728294	broad.mit.edu	37	2	242707041	242707041	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
D2HGDH	728294	broad.mit.edu	37	2	242707041	242707041	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57756646	57756646	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57756646	57756646	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59111926	59111926	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59112403	59112403	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59111926	59111926	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59112403	59112403	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF5	8816	broad.mit.edu	37	14	69521751	69521751	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF5	8816	broad.mit.edu	37	14	69521751	69521751	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36779841	36779841	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36779841	36779841	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN1	1639	broad.mit.edu	37	2	74597015	74597015	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN1	1639	broad.mit.edu	37	2	74597015	74597015	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDC	1644	broad.mit.edu	37	7	50544309	50544309	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDC	1644	broad.mit.edu	37	7	50544309	50544309	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169201524	169201524	+	Missense_Mutation	SNP	C	A	A	rs137933604		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169201524	169201524	+	Missense_Mutation	SNP	C	A	A	rs137933604		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB123	245936	broad.mit.edu	37	20	30037810	30037810	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB123	245936	broad.mit.edu	37	20	30037810	30037810	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DERL1	79139	broad.mit.edu	37	8	124033899	124033899	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DERL1	79139	broad.mit.edu	37	8	124033899	124033899	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFFB	1677	broad.mit.edu	37	1	3786364	3786364	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFFB	1677	broad.mit.edu	37	1	3786364	3786364	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50133509	50133509	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50133509	50133509	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS7C	201140	broad.mit.edu	37	17	9674829	9674829	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS7C	201140	broad.mit.edu	37	17	9674829	9674829	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41585642	41585642	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41585642	41585642	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH1	1729	broad.mit.edu	37	5	140961983	140961983	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH1	1729	broad.mit.edu	37	5	140961983	140961983	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47976893	47976893	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47976893	47976893	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG3	1741	broad.mit.edu	37	X	69669111	69669111	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG3	1741	broad.mit.edu	37	X	69669111	69669111	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP3	58512	broad.mit.edu	37	1	35370069	35370069	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP4	22839	broad.mit.edu	37	20	35060939	35060939	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP4	22839	broad.mit.edu	37	20	35060939	35060939	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38843557	38843557	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38843557	38843557	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11554419	11554419	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11554419	11554419	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72281140	72281140	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72281140	72281140	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186302410	186302410	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186302410	186302410	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183582814	183582814	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132218566	132218566	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132218566	132218566	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225688308	225688308	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225688308	225688308	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117789045	117789045	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117789047	117789047	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117789045	117789045	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117789047	117789047	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169507395	169507395	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169509814	169509814	+	Silent	SNP	G	A	A	rs140457281	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169507395	169507395	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169509814	169509814	+	Silent	SNP	G	A	A	rs140457281	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL3	1809	broad.mit.edu	37	5	146797952	146797953	+	Intron	INS	-	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105436574	105436574	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105436574	105436574	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD2	1813	broad.mit.edu	37	11	113285167	113285168	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD2	1813	broad.mit.edu	37	11	113285167	113285168	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113858370	113858370	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113858370	113858370	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC2	1824	broad.mit.edu	37	18	28648013	28648013	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS2L	54920	broad.mit.edu	37	16	68071896	68071897	+	Intron	INS	-	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP22	56940	broad.mit.edu	37	6	348228	348228	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP22	56940	broad.mit.edu	37	6	348228	348228	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207527706	207527706	+	Silent	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207527706	207527706	+	Silent	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1P9	441032	broad.mit.edu	37	4	106406332	106406332	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB1	79645	broad.mit.edu	37	8	49647602	49647602	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB1	79645	broad.mit.edu	37	8	49647602	49647602	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55238228	55238235	+	Intron	DEL	CTGCCACT	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55238228	55238235	+	Intron	DEL	CTGCCACT	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1L1	254102	broad.mit.edu	37	11	65350467	65350467	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1L1	254102	broad.mit.edu	37	11	65350467	65350467	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3IP1	442720	broad.mit.edu	37	7	109599700	109599700	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3IP1	442720	broad.mit.edu	37	7	109599700	109599700	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL4	6785	broad.mit.edu	37	6	80631314	80631314	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL4	6785	broad.mit.edu	37	6	80631314	80631314	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR3	84658	broad.mit.edu	37	19	14755137	14755138	+	Intron	INS	-	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	132058425	132058425	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	132058425	132058425	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132511901	132511901	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132511901	132511901	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132514727	132514727	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89445045	89445045	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89445045	89445045	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN1	29924	broad.mit.edu	37	19	56203235	56203235	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN1	29924	broad.mit.edu	37	19	56203235	56203235	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPT1	85465	broad.mit.edu	37	2	26587740	26587740	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPT1	85465	broad.mit.edu	37	2	26587740	26587740	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERMN	57471	broad.mit.edu	37	2	158181913	158181913	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERMN	57471	broad.mit.edu	37	2	158181913	158181913	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPNL	339768	broad.mit.edu	37	2	239013434	239013434	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPNL	339768	broad.mit.edu	37	2	239013434	239013434	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETAA1	54465	broad.mit.edu	37	2	67630780	67630780	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETAA1	54465	broad.mit.edu	37	2	67630780	67630780	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC3	11336	broad.mit.edu	37	5	464620	464620	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC3	11336	broad.mit.edu	37	5	464620	464620	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154185181	154185181	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154185181	154185181	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25744119	25744119	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25744119	25744119	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139210035	139210035	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139268931	139268931	+	Splice_Site	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139210035	139210035	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139268931	139268931	+	Splice_Site	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13B	51306	broad.mit.edu	37	5	137346774	137346774	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13B	51306	broad.mit.edu	37	5	137346774	137346774	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175530806	175530806	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175530806	175530806	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM196A	642938	broad.mit.edu	37	10	128973656	128973656	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM196A	642938	broad.mit.edu	37	10	128973656	128973656	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM22A	728118	broad.mit.edu	37	10	88994213	88994213	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM22A	728118	broad.mit.edu	37	10	88994213	88994213	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM26F	441168	broad.mit.edu	37	6	116779694	116779694	+	5'Flank	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM26F	441168	broad.mit.edu	37	6	116779694	116779694	+	5'Flank	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM27L	284123	broad.mit.edu	37	17	21826233	21826233	+	RNA	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM27L	284123	broad.mit.edu	37	17	21826233	21826233	+	RNA	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM32A	26017	broad.mit.edu	37	19	16301759	16301759	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM32A	26017	broad.mit.edu	37	19	16301759	16301759	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B1	100130302	broad.mit.edu	37	X	24381752	24381752	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55C	91775	broad.mit.edu	37	3	101540843	101540843	+	3'UTR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55C	91775	broad.mit.edu	37	3	101540843	101540843	+	3'UTR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067913	190067913	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190250667	190250667	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190250669	190250669	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067913	190067913	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190250667	190250667	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190250669	190250669	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65A	79567	broad.mit.edu	37	16	67573938	67573938	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65A	79567	broad.mit.edu	37	16	67573938	67573938	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43624985	43624985	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43624985	43624985	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM82A1	151393	broad.mit.edu	37	2	38202514	38202514	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM82A1	151393	broad.mit.edu	37	2	38202514	38202514	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83A	84985	broad.mit.edu	37	8	124206200	124206200	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83A	84985	broad.mit.edu	37	8	124206200	124206200	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM92B	339145	broad.mit.edu	37	16	85133738	85133738	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM92B	339145	broad.mit.edu	37	16	85133738	85133738	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187538323	187538323	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187538323	187538323	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150923860	150923860	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150923860	150923860	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92533884	92533884	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92533884	92533884	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126372425	126372425	+	Silent	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126372425	126372425	+	Silent	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR1A	2209	broad.mit.edu	37	1	149762690	149762690	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR1A	2209	broad.mit.edu	37	1	149762690	149762690	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN2	2220	broad.mit.edu	37	9	137777068	137777068	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN2	2220	broad.mit.edu	37	9	137777068	137777068	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157773941	157773941	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157773941	157773941	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157739662	157739662	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157739662	157739662	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157650837	157650837	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157659724	157659724	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157650837	157650837	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157659724	157659724	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124992872	124992872	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125359482	125359482	+	Silent	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125359482	125359482	+	Silent	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD4	121512	broad.mit.edu	37	12	32786499	32786499	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD4	121512	broad.mit.edu	37	12	32786499	32786499	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGG	2266	broad.mit.edu	37	4	155533848	155533848	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGG	2266	broad.mit.edu	37	4	155533848	155533848	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP4	2288	broad.mit.edu	37	12	2908415	2908415	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP4	2288	broad.mit.edu	37	12	2908415	2908415	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72756806	72756806	+	Splice_Site	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72756806	72756806	+	Splice_Site	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152323527	152323527	+	Silent	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152331316	152331316	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152323527	152323527	+	Silent	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152331316	152331316	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152277028	152277028	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152277028	152277028	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152281162	152281162	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLII	2314	broad.mit.edu	37	17	18150366	18150366	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLII	2314	broad.mit.edu	37	17	18150366	18150366	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128477288	128477288	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180048156	180048156	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180048156	180048156	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL1	752	broad.mit.edu	37	17	43323891	43323891	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL1	752	broad.mit.edu	37	17	43323891	43323891	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXI1	2299	broad.mit.edu	37	5	169535126	169535126	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXI1	2299	broad.mit.edu	37	5	169535126	169535126	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79207579	79207579	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79207579	79207579	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32698393	32698393	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32698393	32698393	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL1	11167	broad.mit.edu	37	3	120122105	120122105	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL1	11167	broad.mit.edu	37	3	120122105	120122105	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT9	10690	broad.mit.edu	37	6	96651063	96651063	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT9	10690	broad.mit.edu	37	6	96651063	96651063	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXR1	8087	broad.mit.edu	37	3	180685989	180685989	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXR1	8087	broad.mit.edu	37	3	180685989	180685989	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYCO1	79443	broad.mit.edu	37	3	46006595	46006595	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYCO1	79443	broad.mit.edu	37	3	46023127	46023127	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYCO1	79443	broad.mit.edu	37	3	46006595	46006595	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYCO1	79443	broad.mit.edu	37	3	46023127	46023127	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17445614	17445614	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17445614	17445614	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRP	2568	broad.mit.edu	37	5	170236509	170236509	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRP	2568	broad.mit.edu	37	5	170236509	170236509	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT3	2591	broad.mit.edu	37	2	166611281	166611281	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT3	2591	broad.mit.edu	37	2	166611281	166611281	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALR1	2587	broad.mit.edu	37	18	74962576	74962576	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALR1	2587	broad.mit.edu	37	18	74962576	74962576	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GANAB	23193	broad.mit.edu	37	11	62400867	62400867	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GANAB	23193	broad.mit.edu	37	11	62400867	62400867	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L2	246176	broad.mit.edu	37	17	34072787	34072787	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L2	246176	broad.mit.edu	37	17	34072787	34072787	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9872870	9872870	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA3	2625	broad.mit.edu	37	10	8115676	8115676	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA3	2625	broad.mit.edu	37	10	8115676	8115676	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA5	140628	broad.mit.edu	37	20	61048547	61048547	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2A	54815	broad.mit.edu	37	19	19576209	19576209	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2A	54815	broad.mit.edu	37	19	19576209	19576209	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89730452	89730452	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCFC1	94104	broad.mit.edu	37	21	34143677	34143677	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCFC1	94104	broad.mit.edu	37	21	34143677	34143677	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCH1	2643	broad.mit.edu	37	14	55310797	55310797	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCH1	2643	broad.mit.edu	37	14	55310797	55310797	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM1	8521	broad.mit.edu	37	6	52993667	52993667	+	Silent	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM1	8521	broad.mit.edu	37	6	52993667	52993667	+	Silent	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEFT	115557	broad.mit.edu	37	12	58007452	58007452	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEFT	115557	broad.mit.edu	37	12	58007452	58007452	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179758403	179758403	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179758403	179758403	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117823850	117823850	+	3'UTR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117823850	117823850	+	3'UTR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHSR	2693	broad.mit.edu	37	3	172163255	172163255	+	Missense_Mutation	SNP	G	T	T	rs147508651		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHSR	2693	broad.mit.edu	37	3	172163255	172163255	+	Missense_Mutation	SNP	G	T	T	rs147508651		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC3	126326	broad.mit.edu	37	19	3589536	3589536	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC3	126326	broad.mit.edu	37	19	3589536	3589536	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA8	2703	broad.mit.edu	37	1	147380051	147380051	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA8	2703	broad.mit.edu	37	1	147380051	147380051	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK5	256356	broad.mit.edu	37	3	141896154	141896154	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GKN1	56287	broad.mit.edu	37	2	69206066	69206066	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GKN1	56287	broad.mit.edu	37	2	69206066	69206066	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42088288	42088288	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42088288	42088288	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA3	8001	broad.mit.edu	37	4	175636673	175636673	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA3	8001	broad.mit.edu	37	4	175636673	175636673	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133360732	133360732	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133360732	133360732	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20331623	20331623	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20331623	20331623	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132440207	132440207	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132440207	132440207	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR110	266977	broad.mit.edu	37	6	46993516	46993516	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR110	266977	broad.mit.edu	37	6	46993516	46993516	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135432071	135432071	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46826344	46826344	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46826344	46826344	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR64	10149	broad.mit.edu	37	X	19046303	19046303	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR64	10149	broad.mit.edu	37	X	19046303	19046303	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR97	222487	broad.mit.edu	37	16	57713395	57713395	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR97	222487	broad.mit.edu	37	16	57713395	57713395	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP1	9737	broad.mit.edu	37	X	101910160	101910161	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP1	9737	broad.mit.edu	37	X	101910160	101910161	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX5	2880	broad.mit.edu	37	6	28493648	28493648	+	5'Flank	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX5	2880	broad.mit.edu	37	6	28493648	28493648	+	5'Flank	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30934151	30934151	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30934151	30934151	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN1	2902	broad.mit.edu	37	9	140058266	140058266	+	Silent	SNP	C	A	A	rs146086141	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN1	2902	broad.mit.edu	37	9	140058266	140058266	+	Silent	SNP	C	A	A	rs146086141	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146708273	146708273	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146708273	146708273	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	33995926	33995926	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	33995926	33995926	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27499795	27499795	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27499795	27499795	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GULP1	51454	broad.mit.edu	37	2	189406035	189406035	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GULP1	51454	broad.mit.edu	37	2	189406035	189406035	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H2BFWT	158983	broad.mit.edu	37	X	103268141	103268141	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H2BFWT	158983	broad.mit.edu	37	X	103268141	103268141	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS1	3036	broad.mit.edu	37	19	52222512	52222512	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS1	3036	broad.mit.edu	37	19	52222512	52222512	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBB	3043	broad.mit.edu	37	11	5246739	5246739	+	3'UTR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBB	3043	broad.mit.edu	37	11	5246739	5246739	+	3'UTR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCLS1	3059	broad.mit.edu	37	3	121376064	121376065	+	Intron	DNP	CG	GA	GA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCLS1	3059	broad.mit.edu	37	3	121376064	121376065	+	Intron	DNP	CG	GA	GA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC1	3065	broad.mit.edu	37	1	32796290	32796290	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC1	3065	broad.mit.edu	37	1	32796290	32796290	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18868768	18868768	+	Intron	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18868768	18868768	+	Intron	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63931064	63931064	+	Intron	SNP	C	A	A	rs59224907	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63931064	63931064	+	Intron	SNP	C	A	A	rs59224907	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28389295	28389295	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28389295	28389295	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81335060	81335060	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81335060	81335060	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100123116	100123118	+	Intron	DEL	AAG	-	-	rs35577018		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222717000	222717000	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222717000	222717000	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75189162	75189162	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75189162	75189162	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIRA	7290	broad.mit.edu	37	22	19365548	19365549	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIRA	7290	broad.mit.edu	37	22	19365548	19365549	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1B	3009	broad.mit.edu	37	6	27835222	27835222	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1B	3009	broad.mit.edu	37	6	27835222	27835222	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176308746	176308746	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176308746	176308746	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186031738	186031738	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186114528	186114528	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186031738	186031738	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186114528	186114528	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173531141	173531141	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173531141	173531141	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76452093	76452093	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76452093	76452093	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPUL1	11100	broad.mit.edu	37	19	41800371	41800371	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPUL1	11100	broad.mit.edu	37	19	41800371	41800371	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA3	3200	broad.mit.edu	37	7	27149789	27149789	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA3	3200	broad.mit.edu	37	7	27149789	27149789	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA9	3205	broad.mit.edu	37	7	27203115	27203115	+	3'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA9	3205	broad.mit.edu	37	7	27203115	27203115	+	3'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD10	3236	broad.mit.edu	37	2	176981545	176981545	+	5'UTR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD10	3236	broad.mit.edu	37	2	176981545	176981545	+	5'UTR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD11B1	3290	broad.mit.edu	37	1	209878281	209878281	+	Translation_Start_Site	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AA1	3320	broad.mit.edu	37	14	102549392	102549392	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AA1	3320	broad.mit.edu	37	14	102551666	102551666	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AA1	3320	broad.mit.edu	37	14	102549392	102549392	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AA1	3320	broad.mit.edu	37	14	102551666	102551666	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPBAP1	79663	broad.mit.edu	37	3	122459659	122459659	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	114141546	114141546	+	Silent	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	114141546	114141546	+	Silent	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3C	170572	broad.mit.edu	37	3	183773977	183773977	+	Missense_Mutation	SNP	C	A	A	rs149370364		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3C	170572	broad.mit.edu	37	3	183773977	183773977	+	Missense_Mutation	SNP	C	A	A	rs149370364		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYI	81888	broad.mit.edu	37	1	43918609	43918609	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYI	81888	broad.mit.edu	37	1	43918609	43918609	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IBTK	25998	broad.mit.edu	37	6	82912444	82912444	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IBTK	25998	broad.mit.edu	37	6	82912444	82912444	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICA1L	130026	broad.mit.edu	37	2	203682164	203682164	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICA1L	130026	broad.mit.edu	37	2	203682164	203682164	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIH1	64135	broad.mit.edu	37	2	163133444	163133444	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIH1	64135	broad.mit.edu	37	2	163133444	163133444	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIT1B	439996	broad.mit.edu	37	10	91144500	91144500	+	3'UTR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIT1B	439996	broad.mit.edu	37	10	91144500	91144500	+	3'UTR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFLTD1	160492	broad.mit.edu	37	12	25672689	25672689	+	Intron	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFLTD1	160492	broad.mit.edu	37	12	25702461	25702461	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFLTD1	160492	broad.mit.edu	37	12	25672689	25672689	+	Intron	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFLTD1	160492	broad.mit.edu	37	12	25702461	25702461	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP3	3486	broad.mit.edu	37	7	45957004	45957004	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP3	3486	broad.mit.edu	37	7	45957004	45957004	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFN1	91156	broad.mit.edu	37	1	201195156	201195156	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFN1	91156	broad.mit.edu	37	1	201195156	201195156	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130407900	130407900	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130407900	130407900	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF22	283284	broad.mit.edu	37	11	18740276	18740276	+	Splice_Site	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF22	283284	broad.mit.edu	37	11	18740276	18740276	+	Splice_Site	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF5	150084	broad.mit.edu	37	21	41165524	41165524	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF5	150084	broad.mit.edu	37	21	41165524	41165524	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F8	27177	broad.mit.edu	37	2	113785526	113785526	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F8	27177	broad.mit.edu	37	2	113785526	113785526	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104464476	104464477	+	Intron	DNP	TG	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104464476	104464477	+	Intron	DNP	TG	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27445722	27445722	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27445722	27445722	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL23R	149233	broad.mit.edu	37	1	67685289	67685289	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL23R	149233	broad.mit.edu	37	1	67685289	67685289	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31RA	133396	broad.mit.edu	37	5	55212479	55212479	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31RA	133396	broad.mit.edu	37	5	55212479	55212479	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3111826	3111826	+	3'UTR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3111826	3111826	+	3'UTR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL6R	3570	broad.mit.edu	37	1	154420481	154420481	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL6R	3570	broad.mit.edu	37	1	154420481	154420481	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166892002	166892002	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166892002	166892002	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105170110	105170118	+	Intron	DEL	ATGATGTCT	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182347391	182347391	+	Intron	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15760691	15760692	+	Intron	DNP	GG	TT	TT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15760691	15760692	+	Intron	DNP	GG	TT	TT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31382904	31382904	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31384696	31384696	+	Silent	SNP	C	T	T	rs146985733		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31382904	31382904	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31384696	31384696	+	Silent	SNP	C	T	T	rs146985733		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33633509	33633509	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33633509	33633509	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17943472	17943472	+	Missense_Mutation	SNP	C	T	T	rs1052526		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17952393	17952393	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17943472	17943472	+	Missense_Mutation	SNP	C	T	T	rs1052526		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17952393	17952393	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6062335	6062335	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6062335	6062335	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147040494	147040494	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147040887	147040887	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147040494	147040494	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147040887	147040887	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH2	57158	broad.mit.edu	37	20	42815297	42815297	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH2	57158	broad.mit.edu	37	20	42815297	42815297	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH3	57338	broad.mit.edu	37	16	87678552	87678552	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH3	57338	broad.mit.edu	37	16	87678552	87678552	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124175393	124175393	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124175393	124175393	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KARS	3735	broad.mit.edu	37	16	75681566	75681566	+	5'UTR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KARS	3735	broad.mit.edu	37	16	75681566	75681566	+	5'UTR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD3	143879	broad.mit.edu	37	11	105924167	105924167	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD3	143879	broad.mit.edu	37	11	105924167	105924167	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA7	3743	broad.mit.edu	37	19	49573799	49573799	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA7	3743	broad.mit.edu	37	19	49573799	49573799	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNE1L	23630	broad.mit.edu	37	X	108867958	108867958	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNE1L	23630	broad.mit.edu	37	X	108867958	108867958	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNG1	3755	broad.mit.edu	37	20	49626462	49626462	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNG1	3755	broad.mit.edu	37	20	49626477	49626477	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNG1	3755	broad.mit.edu	37	20	49626462	49626462	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNG1	3755	broad.mit.edu	37	20	49626477	49626477	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163230172	163230172	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163230172	163230172	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78704598	78704598	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78704598	78704598	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB3	27094	broad.mit.edu	37	3	178977920	178977920	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB3	27094	broad.mit.edu	37	3	178977920	178977920	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215792539	215792539	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215792539	215792539	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55964820	55964820	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55964820	55964820	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142659359	142659359	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142659359	142659359	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73491815	73491815	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73491815	73491815	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0528	9847	broad.mit.edu	37	12	22676358	22676358	+	Splice_Site	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0528	9847	broad.mit.edu	37	12	22676358	22676358	+	Splice_Site	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1012	22878	broad.mit.edu	37	18	29433987	29433987	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1012	22878	broad.mit.edu	37	18	29433987	29433987	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1432	57589	broad.mit.edu	37	9	5768969	5768969	+	Splice_Site	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1530	57654	broad.mit.edu	37	4	1379598	1379598	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1530	57654	broad.mit.edu	37	4	1379598	1379598	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36868181	36868181	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36869629	36869629	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36868181	36868181	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36869629	36869629	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3A	11127	broad.mit.edu	37	5	132062006	132062006	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3A	11127	broad.mit.edu	37	5	132062006	132062006	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4A	24137	broad.mit.edu	37	X	69595302	69595302	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4A	24137	broad.mit.edu	37	X	69595302	69595302	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57957497	57957497	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57957497	57957497	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	170015763	170015763	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	170015763	170015763	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55350859	55350859	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55350859	55350859	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC5	57542	broad.mit.edu	37	12	27951196	27951196	+	3'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC5	57542	broad.mit.edu	37	12	27951196	27951196	+	3'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL12	59349	broad.mit.edu	37	1	202887571	202887571	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL12	59349	broad.mit.edu	37	1	202887571	202887571	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL2	11275	broad.mit.edu	37	4	166231704	166231704	+	Splice_Site	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86869090	86869090	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86869090	86869090	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL5	51088	broad.mit.edu	37	4	39116892	39116892	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL5	51088	broad.mit.edu	37	4	39116892	39116892	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK15	55554	broad.mit.edu	37	19	51330248	51330248	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK15	55554	broad.mit.edu	37	19	51330248	51330248	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241750153	241750153	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241750153	241750153	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNG1	3827	broad.mit.edu	37	3	186450506	186450506	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNG1	3827	broad.mit.edu	37	3	186450506	186450506	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT35	3886	broad.mit.edu	37	17	39635009	39635009	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT35	3886	broad.mit.edu	37	17	39635009	39635009	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52841600	52841600	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52841600	52841600	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-4	284827	broad.mit.edu	37	21	31802579	31802579	+	5'Flank	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153133043	153133043	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153133043	153133043	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107615893	107615893	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107615893	107615893	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209790690	209790690	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209790690	209790690	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107746545	107746545	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107746545	107746545	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1B	55132	broad.mit.edu	37	4	128996092	128996092	+	5'UTR	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1B	55132	broad.mit.edu	37	4	128996092	128996092	+	5'UTR	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104309228	104309228	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104309440	104309440	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104309228	104309228	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104309440	104309440	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48634422	48634422	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48634422	48634422	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55087690	55087690	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54779996	54779996	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54779996	54779996	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN2L	81562	broad.mit.edu	37	2	97373407	97373407	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN2L	81562	broad.mit.edu	37	2	97373407	97373407	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMCD1	29995	broad.mit.edu	37	3	8606962	8606962	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMCD1	29995	broad.mit.edu	37	3	8606962	8606962	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76197472	76197472	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283914	283914	broad.mit.edu	37	16	34623735	34623735	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285780	285780	broad.mit.edu	37	6	6535437	6535437	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285780	285780	broad.mit.edu	37	6	6535437	6535437	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442308	442308	broad.mit.edu	37	7	55713357	55713357	+	RNA	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148932742	148932742	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148932742	148932742	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC729156	729156	broad.mit.edu	37	7	66296238	66296238	+	RNA	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22759063	22759063	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22759063	22759063	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONP1	9361	broad.mit.edu	37	19	5705941	5705941	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONP1	9361	broad.mit.edu	37	19	5705941	5705941	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62758472	62758472	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62758472	62758472	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN3	64900	broad.mit.edu	37	20	39976177	39976177	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN3	64900	broad.mit.edu	37	20	39976177	39976177	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPO	4025	broad.mit.edu	37	17	56344998	56344998	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPO	4025	broad.mit.edu	37	17	56344998	56344998	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151271097	151271097	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151792559	151792559	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151271097	151271097	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151792559	151792559	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42356876	42356876	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42356876	42356876	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105502825	105502825	+	3'UTR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105502825	105502825	+	3'UTR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141806458	141806458	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141806458	141806458	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC28	123355	broad.mit.edu	37	15	99824905	99824905	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC28	123355	broad.mit.edu	37	15	99824905	99824905	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC33	375387	broad.mit.edu	37	3	196388131	196388131	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC33	375387	broad.mit.edu	37	3	196388131	196388131	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133673705	133673706	+	Splice_Site	DNP	CC	AT	AT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133687823	133687823	+	5'Flank	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133673705	133673706	+	Splice_Site	DNP	CC	AT	AT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133687823	133687823	+	5'Flank	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70339161	70339161	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70339161	70339161	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85554309	85554309	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85554309	85554309	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40692296	40692296	+	Splice_Site	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40692296	40692296	+	Splice_Site	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1908758	1908758	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1908758	1908758	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTF	4057	broad.mit.edu	37	3	46485038	46485038	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTF	4057	broad.mit.edu	37	3	46485038	46485038	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTK	4058	broad.mit.edu	37	15	41805132	41805132	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTK	4058	broad.mit.edu	37	15	41805132	41805132	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6D	8581	broad.mit.edu	37	8	143867039	143867039	+	Silent	SNP	C	T	T	rs138562115		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6D	8581	broad.mit.edu	37	8	143867039	143867039	+	Silent	SNP	C	T	T	rs138562115		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160766164	160766164	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160766164	160766164	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACC1	346389	broad.mit.edu	37	7	20193792	20193792	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACC1	346389	broad.mit.edu	37	7	20193792	20193792	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39945556	39945556	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB18	286514	broad.mit.edu	37	X	26157899	26157899	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB18	286514	broad.mit.edu	37	X	26157899	26157899	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140969660	140969660	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140969660	140969660	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGT1	84061	broad.mit.edu	37	X	77096936	77096936	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGT1	84061	broad.mit.edu	37	X	77096936	77096936	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K15	389840	broad.mit.edu	37	X	19398322	19398322	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K15	389840	broad.mit.edu	37	X	19398322	19398322	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71206733	71206733	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71206733	71206733	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217148180	217148180	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217148180	217148180	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220773122	220773122	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220773122	220773122	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCAM	4162	broad.mit.edu	37	11	119182513	119182513	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCAM	4162	broad.mit.edu	37	11	119182513	119182513	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138667479	138667479	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138667479	138667479	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM2	4171	broad.mit.edu	37	3	127327870	127327870	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM2	4171	broad.mit.edu	37	3	127327870	127327870	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94288819	94288819	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94288819	94288819	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH1	4190	broad.mit.edu	37	2	63824683	63824683	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH1	4190	broad.mit.edu	37	2	63824683	63824683	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70356683	70356683	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70356683	70356683	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT11D1	64745	broad.mit.edu	37	14	21458201	21458201	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT11D1	64745	broad.mit.edu	37	14	21458201	21458201	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116340082	116340082	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116340082	116340082	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD7	84179	broad.mit.edu	37	4	679846	679846	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD7	84179	broad.mit.edu	37	4	679846	679846	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141785733	141785733	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141785733	141785733	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222827455	222827455	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIB1	57534	broad.mit.edu	37	18	19405788	19405788	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIB1	57534	broad.mit.edu	37	18	19405788	19405788	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18300618	18300618	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18301586	18301586	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18300618	18300618	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18301586	18301586	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIOS	54468	broad.mit.edu	37	7	7613232	7613232	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIOS	54468	broad.mit.edu	37	7	7613232	7613232	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR370	442915	broad.mit.edu	37	14	101377456	101377456	+	5'Flank	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR370	442915	broad.mit.edu	37	14	101377456	101377456	+	5'Flank	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151874497	151874497	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151960177	151960177	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151874497	151874497	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151960177	151960177	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2526822	2526822	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2527912	2527912	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2526822	2526822	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2527912	2527912	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORN1	79906	broad.mit.edu	37	1	2319565	2319565	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORN1	79906	broad.mit.edu	37	1	2319565	2319565	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPL	4352	broad.mit.edu	37	1	43804520	43804520	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPL	4352	broad.mit.edu	37	1	43804520	43804520	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154007672	154007672	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154007672	154007672	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC2	9902	broad.mit.edu	37	17	60765739	60765739	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC2	9902	broad.mit.edu	37	17	60765739	60765739	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL30	51263	broad.mit.edu	37	2	99804581	99804581	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL30	51263	broad.mit.edu	37	2	99804581	99804581	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A5	64232	broad.mit.edu	37	11	60197159	60197159	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A5	64232	broad.mit.edu	37	11	60197159	60197159	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A7	58475	broad.mit.edu	37	11	60161439	60161439	+	3'UTR	DEL	A	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSLNL	401827	broad.mit.edu	37	16	825405	825405	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSLNL	401827	broad.mit.edu	37	16	825405	825405	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTAP	4507	broad.mit.edu	37	9	21929856	21929856	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTAP	4507	broad.mit.edu	37	9	21929856	21929856	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTERFD1	51001	broad.mit.edu	37	8	97256256	97256256	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTERFD1	51001	broad.mit.edu	37	8	97256256	97256256	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	30066711	30066711	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	30066711	30066711	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100680394	100680395	+	Missense_Mutation	DNP	CA	AC	AC			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100683336	100683336	+	Missense_Mutation	SNP	C	A	A	rs142042551		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100683920	100683920	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100685523	100685523	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100680394	100680395	+	Missense_Mutation	DNP	CA	AC	AC			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100683336	100683336	+	Missense_Mutation	SNP	C	A	A	rs142042551		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100683920	100683920	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100685523	100685523	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1080968	1080968	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1081158	1081158	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1080968	1080968	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1081158	1081158	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113510054	113510054	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113510054	113510054	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113537923	113537923	+	Intron	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3261949	3261949	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL2	4605	broad.mit.edu	37	20	42340215	42340215	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL2	4605	broad.mit.edu	37	20	42340215	42340215	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10355866	10355866	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10355866	10355866	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23857758	23857758	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23871694	23871694	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23857758	23857758	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23871694	23871694	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK4	340156	broad.mit.edu	37	6	2678413	2678413	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK4	340156	broad.mit.edu	37	6	2678413	2678413	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123419703	123419703	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123419703	123419703	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26164338	26164338	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26164338	26164338	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12666878	12666878	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12666878	12666878	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM1	8736	broad.mit.edu	37	18	3102657	3102657	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM1	8736	broad.mit.edu	37	18	3102657	3102657	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69881917	69881917	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69881917	69881917	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101735254	101735254	+	Intron	SNP	C	A	A	rs139049605	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101763618	101763618	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101735254	101735254	+	Intron	SNP	C	A	A	rs139049605	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101763618	101763618	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT10	55226	broad.mit.edu	37	11	34160792	34160792	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT10	55226	broad.mit.edu	37	11	34160792	34160792	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20071618	20071618	+	Intron	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20122721	20122721	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20071618	20071618	+	Intron	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20122721	20122721	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145290659	145290659	+	5'Flank	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145765545	145765545	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145765545	145765545	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16901210	16901210	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16901210	16901210	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16916736	16916736	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113140761	113140761	+	Intron	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113140761	113140761	+	Intron	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAN	1463	broad.mit.edu	37	19	19360467	19360467	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAN	1463	broad.mit.edu	37	19	19360467	19360467	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6631848	6631848	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6631848	6631848	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCCRP1	342897	broad.mit.edu	37	19	39691004	39691004	+	Silent	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG2	57447	broad.mit.edu	37	14	21488913	21488913	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG2	57447	broad.mit.edu	37	14	21488913	21488913	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115997479	115997479	+	Silent	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS1	4719	broad.mit.edu	37	2	207007312	207007312	+	Intron	DEL	T	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS1	4719	broad.mit.edu	37	2	207007312	207007312	+	Intron	DEL	T	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152387542	152387542	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152387542	152387542	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK3	4752	broad.mit.edu	37	13	52726884	52726884	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK3	4752	broad.mit.edu	37	13	52726884	52726884	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK5	341676	broad.mit.edu	37	13	52663447	52663447	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK5	341676	broad.mit.edu	37	13	52663447	52663447	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO2	81831	broad.mit.edu	37	16	47162416	47162416	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO2	81831	broad.mit.edu	37	16	47162416	47162416	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22143148	22143148	+	RNA	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22143148	22143148	+	RNA	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29653005	29653005	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29653005	29653005	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2L1	4779	broad.mit.edu	37	17	46134236	46134237	+	Intron	INS	-	CT	CT	rs140826056	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIC	4782	broad.mit.edu	37	19	3434549	3434549	+	Intron	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236187423	236187423	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236187423	236187423	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25443014	25443014	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25443014	25443014	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63777274	63777274	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63777274	63777274	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5821792	5821792	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5821792	5821792	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLN	57486	broad.mit.edu	37	5	65028881	65028881	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP10	338322	broad.mit.edu	37	11	7981815	7981815	+	Silent	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP10	338322	broad.mit.edu	37	11	7981815	7981815	+	Silent	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56491020	56491020	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56491020	56491020	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMT1	4836	broad.mit.edu	37	17	43181349	43181349	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMT1	4836	broad.mit.edu	37	17	43181349	43181349	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP56	10528	broad.mit.edu	37	20	2636619	2636619	+	Frame_Shift_Del	DEL	A	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162270281	162270281	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162270281	162270281	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139413994	139413994	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139413994	139413994	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA1	4857	broad.mit.edu	37	14	26917950	26917950	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA1	4857	broad.mit.edu	37	14	26917950	26917950	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36322519	36322519	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36322519	36322519	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPM1	4869	broad.mit.edu	37	5	170819801	170819801	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPM1	4869	broad.mit.edu	37	5	170819801	170819801	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR3	4883	broad.mit.edu	37	5	32712141	32712141	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR3	4883	broad.mit.edu	37	5	32712141	32712141	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115373868	115373868	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115373868	115373868	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105150543	105150543	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105150543	105150543	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64453464	64453464	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64453464	64453464	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156844567	156844567	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156844567	156844567	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUBP2	10101	broad.mit.edu	37	16	1837635	1837635	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUBP2	10101	broad.mit.edu	37	16	1837635	1837635	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163298731	163298731	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163309231	163309231	+	Silent	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163298731	163298731	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163309231	163309231	+	Silent	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37351502	37351502	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37351502	37351502	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102337496	102337496	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102337496	102337496	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS1	4938	broad.mit.edu	37	12	113357092	113357092	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS1	4938	broad.mit.edu	37	12	113357092	113357092	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228466474	228466474	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228491120	228491120	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228548137	228548137	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228466474	228466474	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228491120	228491120	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228548137	228548137	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF1	4956	broad.mit.edu	37	8	103573108	103573108	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF1	4956	broad.mit.edu	37	8	103573108	103573108	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161953664	161953664	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161953664	161953664	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ONECUT2	9480	broad.mit.edu	37	18	55103683	55103683	+	Silent	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ONECUT2	9480	broad.mit.edu	37	18	55103683	55103683	+	Silent	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6865342	6865342	+	5'Flank	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6865342	6865342	+	5'Flank	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H4	126541	broad.mit.edu	37	19	16060156	16060156	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H4	126541	broad.mit.edu	37	19	16060156	16060156	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390597	158390597	+	Silent	SNP	C	A	A	rs138054803		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390597	158390597	+	Silent	SNP	C	A	A	rs138054803		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10W1	81341	broad.mit.edu	37	11	58034470	58034470	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G2	81470	broad.mit.edu	37	1	247751927	247751927	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248128615	248128615	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248167235	248167235	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248128615	248128615	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248167235	248167235	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T11	127077	broad.mit.edu	37	1	248790155	248790155	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T11	127077	broad.mit.edu	37	1	248790155	248790155	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T2	401992	broad.mit.edu	37	1	248616384	248616384	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T2	401992	broad.mit.edu	37	1	248616384	248616384	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T34	127068	broad.mit.edu	37	1	248737364	248737364	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T34	127068	broad.mit.edu	37	1	248737364	248737364	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D11	219986	broad.mit.edu	37	11	59271767	59271767	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D11	219986	broad.mit.edu	37	11	59271767	59271767	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K2	390431	broad.mit.edu	37	14	20344288	20344288	+	5'Flank	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K2	390431	broad.mit.edu	37	14	20344288	20344288	+	5'Flank	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51E1	143503	broad.mit.edu	37	11	4674576	4674576	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51M1	390059	broad.mit.edu	37	11	5411262	5411262	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51M1	390059	broad.mit.edu	37	11	5411262	5411262	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52K2	119774	broad.mit.edu	37	11	4470913	4470913	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52K2	119774	broad.mit.edu	37	11	4470913	4470913	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5969145	5969145	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5969145	5969145	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B3	441608	broad.mit.edu	37	11	58170573	58170573	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55587648	55587648	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M1	390168	broad.mit.edu	37	11	56380709	56380709	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M1	390168	broad.mit.edu	37	11	56380709	56380709	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K6	128371	broad.mit.edu	37	1	158725239	158725239	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q2	219957	broad.mit.edu	37	11	57958429	57958429	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q2	219957	broad.mit.edu	37	11	57958429	57958429	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSR2	116039	broad.mit.edu	37	8	99963021	99963021	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90690839	90690839	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90690948	90690948	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90690839	90690839	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90690948	90690948	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110406672	110406672	+	Intron	DEL	T	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9523281	9523281	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9523281	9523281	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162683510	162683513	+	Intron	DEL	AAAC	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162683510	162683513	+	Intron	DEL	AAAC	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25029154	25029154	+	Splice_Site	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25029154	25029154	+	Splice_Site	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134071779	134071779	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134071779	134071779	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91642839	91642839	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91642839	91642839	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53422541	53422541	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53422595	53422595	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53422541	53422541	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53422595	53422595	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140242795	140242795	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140242795	140242795	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA6	56142	broad.mit.edu	37	5	140209948	140209948	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA6	56142	broad.mit.edu	37	5	140209948	140209948	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140573608	140573608	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140573608	140573608	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140588987	140588987	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB13	56123	broad.mit.edu	37	5	140594338	140594338	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB13	56123	broad.mit.edu	37	5	140594338	140594338	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140503451	140503451	+	Missense_Mutation	SNP	G	T	T	rs149487286		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140503451	140503451	+	Missense_Mutation	SNP	G	T	T	rs149487286		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140553151	140553151	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140553151	140553151	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB9	56127	broad.mit.edu	37	5	140569345	140569345	+	3'UTR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB9	56127	broad.mit.edu	37	5	140569345	140569345	+	3'UTR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA9	56107	broad.mit.edu	37	5	140783119	140783119	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA9	56107	broad.mit.edu	37	5	140783119	140783119	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGC5	56097	broad.mit.edu	37	5	140869878	140869878	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGC5	56097	broad.mit.edu	37	5	140869878	140869878	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD2	5134	broad.mit.edu	37	6	170887973	170887973	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD2	5134	broad.mit.edu	37	6	170887973	170887973	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183053786	183053786	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1B	5153	broad.mit.edu	37	12	54943667	54943667	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1B	5153	broad.mit.edu	37	12	54943667	54943667	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14825482	14825483	+	Intron	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14825482	14825483	+	Intron	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32089086	32089086	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32089086	32089086	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD4	57595	broad.mit.edu	37	X	153068961	153068961	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD4	57595	broad.mit.edu	37	X	153068961	153068961	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73440390	73440390	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73440390	73440390	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156877441	156877441	+	Silent	SNP	C	T	T	rs148520058	byFrequency	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156880491	156880491	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156877441	156877441	+	Silent	SNP	C	T	T	rs148520058	byFrequency	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156880491	156880491	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB3	5209	broad.mit.edu	37	10	6268204	6268204	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB3	5209	broad.mit.edu	37	10	6268204	6268204	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKL	5211	broad.mit.edu	37	21	45730918	45730918	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKL	5211	broad.mit.edu	37	21	45730918	45730918	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK1	5230	broad.mit.edu	37	X	77373478	77373478	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK1	5230	broad.mit.edu	37	X	77373478	77373478	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM2L1	283209	broad.mit.edu	37	11	74066805	74066805	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133806861	133806861	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133806861	133806861	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIH1D1	55011	broad.mit.edu	37	19	49950836	49950836	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIH1D1	55011	broad.mit.edu	37	19	49950836	49950836	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106509707	106509707	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106509707	106509707	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R4	30849	broad.mit.edu	37	3	130463491	130463491	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R4	30849	broad.mit.edu	37	3	130463491	130463491	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209169068	209169068	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209169068	209169068	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130831397	130831397	+	Intron	SNP	A	G	G	rs150377061	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130831397	130831397	+	Intron	SNP	A	G	G	rs150377061	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25121445	25121445	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25121445	25121445	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94352911	94352911	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94352911	94352911	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47897406	47897406	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47897406	47897406	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	33031935	33031935	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	33031935	33031935	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2A	5320	broad.mit.edu	37	1	20301965	20301965	+	3'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4F	255189	broad.mit.edu	37	15	42434107	42434107	+	3'UTR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4F	255189	broad.mit.edu	37	15	42434107	42434107	+	3'UTR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59807963	59807963	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59807963	59807963	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1	10761	broad.mit.edu	37	X	133700520	133700520	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1	10761	broad.mit.edu	37	X	133700520	133700520	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9416206	9416206	+	Splice_Site	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9433936	9433936	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9416206	9416206	+	Splice_Site	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9433936	9433936	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCD3	113026	broad.mit.edu	37	17	43195505	43195505	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCD3	113026	broad.mit.edu	37	17	43195505	43195505	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCD4	84812	broad.mit.edu	37	2	219495489	219495489	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCD4	84812	broad.mit.edu	37	2	219498293	219498293	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCD4	84812	broad.mit.edu	37	2	219495489	219495489	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCD4	84812	broad.mit.edu	37	2	219498293	219498293	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18846521	18846521	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18846521	18846521	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16872832	16872832	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16872832	16872832	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131872244	131872244	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131872244	131872244	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB3	5365	broad.mit.edu	37	X	153043158	153043158	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB3	5365	broad.mit.edu	37	X	153043158	153043158	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXND1	23129	broad.mit.edu	37	3	129277471	129277471	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXND1	23129	broad.mit.edu	37	3	129277471	129277471	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72188209	72188209	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72188209	72188209	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMPCB	9512	broad.mit.edu	37	7	102938949	102938949	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP1	5407	broad.mit.edu	37	10	118368484	118368484	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP1	5407	broad.mit.edu	37	10	118368484	118368484	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118187472	118187472	+	5'UTR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118236066	118236066	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118187472	118187472	+	5'UTR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118236066	118236066	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POFUT2	23275	broad.mit.edu	37	21	46686069	46686069	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POFUT2	23275	broad.mit.edu	37	21	46686069	46686069	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1B	84172	broad.mit.edu	37	2	113299993	113299993	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1B	84172	broad.mit.edu	37	2	113299993	113299993	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79781687	79781687	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79781687	79781687	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PON3	5446	broad.mit.edu	37	7	95001637	95001637	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PON3	5446	broad.mit.edu	37	7	95001637	95001637	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAN-P2RY11	692312	broad.mit.edu	37	19	10220370	10220370	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAN-P2RY11	692312	broad.mit.edu	37	19	10220370	10220370	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37464841	37464841	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37464841	37464841	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2C	5522	broad.mit.edu	37	4	6374148	6374148	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2C	5522	broad.mit.edu	37	4	6374148	6374148	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23509208	23509208	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23509208	23509208	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47262612	47262612	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47262612	47262612	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186276759	186276759	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR1B	5575	broad.mit.edu	37	7	720141	720141	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR1B	5575	broad.mit.edu	37	7	720141	720141	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCQ	5588	broad.mit.edu	37	10	6527124	6527124	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRA	8575	broad.mit.edu	37	2	179314917	179314917	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRA	8575	broad.mit.edu	37	2	179314917	179314917	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF6	24148	broad.mit.edu	37	20	62612636	62612636	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF6	24148	broad.mit.edu	37	20	62612636	62612636	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPS1	5631	broad.mit.edu	37	X	106882646	106882646	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPS1	5631	broad.mit.edu	37	X	106882646	106882646	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR23B	389151	broad.mit.edu	37	3	138738865	138738865	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR23B	389151	broad.mit.edu	37	3	138738865	138738865	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45221291	45221291	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43571244	43571244	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43571244	43571244	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSIP1	11168	broad.mit.edu	37	9	15486099	15486099	+	Intron	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSIP1	11168	broad.mit.edu	37	9	15486099	15486099	+	Intron	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB9	5698	broad.mit.edu	37	6	32825922	32825922	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB9	5698	broad.mit.edu	37	6	32825922	32825922	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC6	5706	broad.mit.edu	37	14	53180639	53180639	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC6	5706	broad.mit.edu	37	14	53180639	53180639	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD12	5718	broad.mit.edu	37	17	65340804	65340804	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD12	5718	broad.mit.edu	37	17	65340804	65340804	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMF1	9491	broad.mit.edu	37	20	1145169	1145169	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMF1	9491	broad.mit.edu	37	20	1145169	1145169	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIS	5740	broad.mit.edu	37	20	48140893	48140893	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIS	5740	broad.mit.edu	37	20	48140893	48140893	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH	5741	broad.mit.edu	37	11	13514017	13514017	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH	5741	broad.mit.edu	37	11	13514017	13514017	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN3	5774	broad.mit.edu	37	9	112168699	112168699	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN3	5774	broad.mit.edu	37	9	112168699	112168699	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN5	84867	broad.mit.edu	37	11	18763665	18763665	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN5	84867	broad.mit.edu	37	11	18765466	18765467	+	Intron	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN5	84867	broad.mit.edu	37	11	18763665	18763665	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN5	84867	broad.mit.edu	37	11	18765466	18765467	+	Intron	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYDC2	152138	broad.mit.edu	37	3	191178923	191178923	+	5'Flank	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYDC2	152138	broad.mit.edu	37	3	191178923	191178923	+	5'Flank	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGO2	90780	broad.mit.edu	37	1	154933310	154933310	+	Intron	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGO2	90780	broad.mit.edu	37	1	154933310	154933310	+	Intron	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP5	26056	broad.mit.edu	37	2	73315133	73315133	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP5	26056	broad.mit.edu	37	2	73315133	73315133	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABL5	64792	broad.mit.edu	37	7	100958530	100958530	+	Nonsense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABL5	64792	broad.mit.edu	37	7	100958530	100958530	+	Nonsense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36097026	36097026	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36097026	36097026	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP9	10048	broad.mit.edu	37	6	13634814	13634814	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP9	10048	broad.mit.edu	37	6	13634814	13634814	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP2	23108	broad.mit.edu	37	17	2935739	2935739	+	3'UTR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP2	23108	broad.mit.edu	37	17	2935739	2935739	+	3'UTR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79298770	79298770	+	Silent	SNP	G	A	A	rs141856364	byFrequency	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79298770	79298770	+	Silent	SNP	G	A	A	rs141856364	byFrequency	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48881624	48881624	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48881624	48881624	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP8	5932	broad.mit.edu	37	18	20565057	20565057	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP8	5932	broad.mit.edu	37	18	20565057	20565057	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBL1	5933	broad.mit.edu	37	20	35632118	35632119	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBL1	5933	broad.mit.edu	37	20	35632118	35632119	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79312479	79312479	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79312479	79312479	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79314006	79314006	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385822	79385822	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385822	79385822	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFT1	91869	broad.mit.edu	37	3	53160012	53160012	+	Splice_Site	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFT1	91869	broad.mit.edu	37	3	53160012	53160012	+	Splice_Site	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG4	340526	broad.mit.edu	37	X	71350872	71350872	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG4	340526	broad.mit.edu	37	X	71350872	71350872	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL2	5863	broad.mit.edu	37	6	33262444	33262445	+	Intron	DEL	AC	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108492764	108492764	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108492764	108492764	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS13	6003	broad.mit.edu	37	1	192613472	192613472	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS13	6003	broad.mit.edu	37	1	192613472	192613472	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163039278	163039278	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163039278	163039278	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72925085	72925085	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	73029177	73029177	+	3'UTR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72925085	72925085	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	73029177	73029177	+	3'UTR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOXF1	158800	broad.mit.edu	37	X	119243227	119243227	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOXF1	158800	broad.mit.edu	37	X	119243227	119243227	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIC3	79608	broad.mit.edu	37	11	8190394	8190394	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIC3	79608	broad.mit.edu	37	11	8190394	8190394	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RILP	83547	broad.mit.edu	37	17	1551212	1551212	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLIM	51132	broad.mit.edu	37	X	73812218	73812218	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLIM	51132	broad.mit.edu	37	X	73812218	73812218	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF128	79589	broad.mit.edu	37	X	106038880	106038880	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77090122	77090122	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77090122	77090122	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68896915	68896915	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68896915	68896915	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS13	6207	broad.mit.edu	37	11	17099024	17099025	+	Splice_Site	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS13	6207	broad.mit.edu	37	11	17099024	17099025	+	Splice_Site	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTBDN	83546	broad.mit.edu	37	19	12945975	12945975	+	5'UTR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTBDN	83546	broad.mit.edu	37	19	12945975	12945975	+	5'UTR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92972729	92972729	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92972729	92972729	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92998367	92998367	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUVBL2	10856	broad.mit.edu	37	19	49517961	49517961	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUVBL2	10856	broad.mit.edu	37	19	49517961	49517961	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39075606	39075606	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39075606	39075606	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237550607	237550607	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237659975	237659975	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237660144	237660144	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237794761	237794762	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237550607	237550607	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237659975	237659975	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237660144	237660144	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237794761	237794762	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169646139	169646139	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169646139	169646139	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS2	9701	broad.mit.edu	37	22	50875923	50875923	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS2	9701	broad.mit.edu	37	22	50875923	50875923	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARM1	23098	broad.mit.edu	37	17	26723349	26723349	+	3'UTR	SNP	C	T	T	rs145537060	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARM1	23098	broad.mit.edu	37	17	26723349	26723349	+	3'UTR	SNP	C	T	T	rs145537060	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH3	54440	broad.mit.edu	37	X	128921884	128921884	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH3	54440	broad.mit.edu	37	X	128921884	128921884	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH3	54440	broad.mit.edu	37	X	128924679	128924679	+	Intron	SNP	C	A	A	rs147361684	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATL1	340562	broad.mit.edu	37	X	84349254	84349254	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATL1	340562	broad.mit.edu	37	X	84349254	84349254	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD2	152579	broad.mit.edu	37	4	54232058	54232058	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD2	152579	broad.mit.edu	37	4	54232058	54232058	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38764936	38764936	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38764936	38764936	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62049513	62049513	+	Silent	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62049513	62049513	+	Silent	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDR42E1	93517	broad.mit.edu	37	16	82034492	82034492	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDR42E1	93517	broad.mit.edu	37	16	82034492	82034492	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC13	6396	broad.mit.edu	37	3	10354220	10354220	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC13	6396	broad.mit.edu	37	3	10354220	10354220	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169566244	169566244	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169566244	169566244	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4D	10507	broad.mit.edu	37	9	92087515	92087515	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMG2	6407	broad.mit.edu	37	20	43851907	43851907	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMG2	6407	broad.mit.edu	37	20	43851907	43851907	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT6	23157	broad.mit.edu	37	X	118771019	118771019	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT6	23157	broad.mit.edu	37	X	118783987	118783987	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT6	23157	broad.mit.edu	37	X	118771019	118771019	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT6	23157	broad.mit.edu	37	X	118783987	118783987	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95030082	95030082	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95030082	95030082	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61262397	61262397	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61262397	61262397	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42530897	42530897	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42530897	42530897	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37429497	37429497	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37429497	37429497	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29897131	29897132	+	Intron	DNP	GC	AG	AG			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29897131	29897132	+	Intron	DNP	GC	AG	AG			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26706764	26706764	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26709983	26709984	+	Intron	DNP	GG	TT	TT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26706764	26706764	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26709983	26709984	+	Intron	DNP	GG	TT	TT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3A1	10291	broad.mit.edu	37	22	30735257	30735257	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3A1	10291	broad.mit.edu	37	22	30735257	30735257	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B2	10992	broad.mit.edu	37	11	65829421	65829421	+	Silent	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B2	10992	broad.mit.edu	37	11	65829421	65829421	+	Silent	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK1	6446	broad.mit.edu	37	6	134492496	134492497	+	Intron	INS	-	TG	TG	rs141268381	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP5L	80851	broad.mit.edu	37	1	249119037	249119037	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP5L	80851	broad.mit.edu	37	1	249119037	249119037	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2B	285590	broad.mit.edu	37	5	171766609	171766609	+	Silent	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2B	285590	broad.mit.edu	37	5	171766609	171766609	+	Silent	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51215139	51215139	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51215139	51215139	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHARPIN	81858	broad.mit.edu	37	8	145153921	145153921	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHARPIN	81858	broad.mit.edu	37	8	145153921	145153921	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC4	399694	broad.mit.edu	37	15	49183146	49183146	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHMT2	6472	broad.mit.edu	37	12	57627209	57627209	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHMT2	6472	broad.mit.edu	37	12	57627209	57627209	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM3	57619	broad.mit.edu	37	4	77680773	77680773	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM3	57619	broad.mit.edu	37	4	77680773	77680773	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX3	6496	broad.mit.edu	37	2	45169954	45169954	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164710138	164710138	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164710138	164710138	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLA2	84174	broad.mit.edu	37	20	35262953	35262953	+	Missense_Mutation	SNP	G	A	A	rs145656453	byFrequency	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLA2	84174	broad.mit.edu	37	20	35262953	35262953	+	Missense_Mutation	SNP	G	A	A	rs145656453	byFrequency	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF9	89886	broad.mit.edu	37	1	159923509	159923509	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF9	89886	broad.mit.edu	37	1	159923509	159923509	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44668973	44668973	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A9	56996	broad.mit.edu	37	7	100454719	100454719	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A9	56996	broad.mit.edu	37	7	100454719	100454719	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25925891	25925891	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25925891	25925891	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119015006	119015006	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119015006	119015006	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC19A3	80704	broad.mit.edu	37	2	228552161	228552161	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC19A3	80704	broad.mit.edu	37	2	228552161	228552161	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15075095	15075095	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15075095	15075095	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110763908	110763908	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110763908	110763908	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A3	6581	broad.mit.edu	37	6	160864687	160864687	+	Missense_Mutation	SNP	G	T	T	rs9365165		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A3	6581	broad.mit.edu	37	6	160864687	160864687	+	Missense_Mutation	SNP	G	T	T	rs9365165		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A1	9963	broad.mit.edu	37	5	138714949	138714949	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A1	9963	broad.mit.edu	37	5	138714949	138714949	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19597236	19597236	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19597236	19597236	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95849090	95849090	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95849090	95849090	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128321030	128321030	+	Splice_Site	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128321030	128321030	+	Splice_Site	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC32A1	140679	broad.mit.edu	37	20	37353584	37353584	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC32A1	140679	broad.mit.edu	37	20	37353584	37353584	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35C2	51006	broad.mit.edu	37	20	44983613	44983613	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35C2	51006	broad.mit.edu	37	20	44983613	44983613	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110738261	110738261	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110741162	110741162	+	3'UTR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110738261	110738261	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110741162	110741162	+	3'UTR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A18	348932	broad.mit.edu	37	5	1244504	1244504	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A18	348932	broad.mit.edu	37	5	1244504	1244504	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170198019	170198019	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170219103	170219103	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170198019	170198019	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170219103	170219103	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A7	9056	broad.mit.edu	37	14	23282100	23282100	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A7	9056	broad.mit.edu	37	14	23282100	23282100	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A2	6549	broad.mit.edu	37	2	103311549	103311549	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A2	6549	broad.mit.edu	37	2	103311549	103311549	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21172118	21172118	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2A1	6578	broad.mit.edu	37	3	133667690	133667690	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98807553	98807553	+	Missense_Mutation	SNP	C	A	A	rs139828471		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98807553	98807553	+	Missense_Mutation	SNP	C	A	A	rs139828471		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168213055	168213055	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168213055	168213055	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84455027	84455027	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84455027	84455027	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144904139	144904139	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144904139	144904139	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88327846	88327846	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88327846	88327846	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLMAP	7871	broad.mit.edu	37	3	57835617	57835617	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLMAP	7871	broad.mit.edu	37	3	57835617	57835617	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLN	6588	broad.mit.edu	37	11	107578577	107578577	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLN	6588	broad.mit.edu	37	11	107578577	107578577	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17961448	17961448	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17961448	17961448	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70444600	70444600	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70444600	70444600	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX1	6656	broad.mit.edu	37	13	112722333	112722333	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX1	6656	broad.mit.edu	37	13	112722333	112722333	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX7	83595	broad.mit.edu	37	8	10683036	10683036	+	Intron	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX7	83595	broad.mit.edu	37	8	10683036	10683036	+	Intron	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231112827	231112827	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231112827	231112827	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35659145	35659145	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35670143	35670144	+	Intron	INS	-	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35659145	35659145	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOPL	339745	broad.mit.edu	37	2	139322436	139322436	+	Intron	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOPL	339745	broad.mit.edu	37	2	139322436	139322436	+	Intron	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55648419	55648419	+	5'Flank	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55648419	55648419	+	5'Flank	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158609396	158609396	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158609521	158609521	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158617523	158617523	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158622503	158622503	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158609396	158609396	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158609521	158609521	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158617523	158617523	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158622503	158622503	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPZ1	84654	broad.mit.edu	37	5	79617271	79617271	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPZ1	84654	broad.mit.edu	37	5	79617271	79617271	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP54	6729	broad.mit.edu	37	14	35492299	35492316	+	Intron	DEL	AGCTTGTTATTAGTTAAC	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK3	26576	broad.mit.edu	37	X	153046925	153046925	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK3	26576	broad.mit.edu	37	X	153046925	153046925	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH1	54434	broad.mit.edu	37	12	109246300	109246300	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH1	54434	broad.mit.edu	37	12	109246300	109246300	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SST	6750	broad.mit.edu	37	3	187387015	187387015	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST14	6768	broad.mit.edu	37	11	130058381	130058381	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST14	6768	broad.mit.edu	37	11	130058381	130058381	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	103988316	103988316	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	103988316	103988316	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC	6769	broad.mit.edu	37	3	36587622	36587622	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC	6769	broad.mit.edu	37	3	36587622	36587622	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136139833	136139833	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136139833	136139833	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67937356	67937356	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67941413	67941413	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67937356	67937356	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67941413	67941413	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171479999	171479999	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171479999	171479999	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32A	202374	broad.mit.edu	37	5	146722718	146722718	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32A	202374	broad.mit.edu	37	5	146722718	146722718	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK36	27148	broad.mit.edu	37	2	219553476	219553476	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	121100491	121100491	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	121100491	121100491	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C4	27233	broad.mit.edu	37	2	108998221	108998221	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C4	27233	broad.mit.edu	37	2	108998221	108998221	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPV3L1	6832	broad.mit.edu	37	10	70968563	70968563	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD2	56241	broad.mit.edu	37	22	24584179	24584179	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD2	56241	broad.mit.edu	37	22	24584179	24584179	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113148345	113148345	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113148345	113148345	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10956295	10956295	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10956295	10956295	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP3	50511	broad.mit.edu	37	12	102131692	102131692	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP3	50511	broad.mit.edu	37	12	102131692	102131692	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152638170	152638170	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152638170	152638170	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64557634	64557634	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64591827	64591827	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64557634	64557634	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64591827	64591827	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT1	6857	broad.mit.edu	37	12	79701798	79701798	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT1	6857	broad.mit.edu	37	12	79701798	79701798	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL4	94121	broad.mit.edu	37	X	99943410	99943410	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL4	94121	broad.mit.edu	37	X	99943410	99943410	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC1	6863	broad.mit.edu	37	7	97369240	97369240	+	3'UTR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC1	6863	broad.mit.edu	37	7	97369240	97369240	+	3'UTR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32631299	32631299	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32631299	32631299	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32633637	32633637	+	Silent	SNP	G	C	C	rs34334113		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120801181	120801181	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120801181	120801181	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARP	445347	broad.mit.edu	37	7	38301990	38301990	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARP	445347	broad.mit.edu	37	7	38301990	38301990	+	Intron	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D10A	83874	broad.mit.edu	37	22	30691010	30691010	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D10A	83874	broad.mit.edu	37	22	30691010	30691010	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX19	9095	broad.mit.edu	37	1	168215927	168215927	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX19	9095	broad.mit.edu	37	1	168215927	168215927	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7L1	83439	broad.mit.edu	37	2	85533621	85533621	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7L1	83439	broad.mit.edu	37	2	85533621	85533621	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179562680	179562680	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179562680	179562680	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-	rs140076465	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	121060363	121060363	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	121060363	121060363	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERT	7015	broad.mit.edu	37	5	1264701	1264701	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERT	7015	broad.mit.edu	37	5	1264701	1264701	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	69849576	69849576	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	69849576	69849576	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP1	7027	broad.mit.edu	37	13	114287464	114287464	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP1	7027	broad.mit.edu	37	13	114287464	114287464	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP2	7029	broad.mit.edu	37	3	141671484	141671484	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP2	7029	broad.mit.edu	37	3	141671484	141671484	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM4	7047	broad.mit.edu	37	3	44943081	44943081	+	Silent	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM4	7047	broad.mit.edu	37	3	44948424	44948424	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM4	7047	broad.mit.edu	37	3	44943081	44943081	+	Silent	SNP	A	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM4	7047	broad.mit.edu	37	3	44948424	44948424	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2380896	2380896	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2380896	2380896	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133906105	133906105	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133906105	133906105	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169625211	169625211	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169625211	169625211	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155500340	155500340	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155500340	155500340	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	167020816	167020816	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	167020816	167020816	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63017385	63017385	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63017385	63017385	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75355150	75355150	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75355150	75355150	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32955920	32955920	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32955920	32955920	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM135	65084	broad.mit.edu	37	11	86969986	86969986	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM135	65084	broad.mit.edu	37	11	86969986	86969986	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM181	57583	broad.mit.edu	37	6	159028287	159028287	+	Silent	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM181	57583	broad.mit.edu	37	6	159028287	159028287	+	Silent	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74305045	74305045	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74305045	74305045	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM41B	440026	broad.mit.edu	37	11	9304927	9304927	+	3'UTR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM41B	440026	broad.mit.edu	37	11	9304927	9304927	+	3'UTR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94808049	94808049	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94808049	94808049	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP8L3	388121	broad.mit.edu	37	15	51350211	51350211	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP8L3	388121	broad.mit.edu	37	15	51350211	51350211	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF1B	7133	broad.mit.edu	37	1	12251008	12251008	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF1B	7133	broad.mit.edu	37	1	12251008	12251008	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF21	27242	broad.mit.edu	37	6	47251938	47251938	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF21	27242	broad.mit.edu	37	6	47251938	47251938	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74801678	74801678	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74801678	74801678	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175092757	175092757	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175105921	175105921	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175092757	175092757	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175105921	175105921	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175362956	175362956	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47317603	47317603	+	3'UTR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10909590	10909591	+	Intron	INS	-	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10998176	10998176	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10998190	10998190	+	Intron	DEL	T	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10909590	10909591	+	Intron	INS	-	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10998176	10998176	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10998190	10998190	+	Intron	DEL	T	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRA2A	29896	broad.mit.edu	37	7	23556207	23556207	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRA2A	29896	broad.mit.edu	37	7	23556207	23556207	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM15	89870	broad.mit.edu	37	6	30136040	30136040	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM15	89870	broad.mit.edu	37	6	30136040	30136040	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM16	10626	broad.mit.edu	37	17	15499942	15499942	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM16	10626	broad.mit.edu	37	17	15499942	15499942	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM46	80128	broad.mit.edu	37	1	155156178	155156178	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM46	80128	broad.mit.edu	37	1	155156178	155156178	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM69	140691	broad.mit.edu	37	15	45028942	45028942	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM69	140691	broad.mit.edu	37	15	45028942	45028942	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM9	114088	broad.mit.edu	37	14	51489622	51489622	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM9	114088	broad.mit.edu	37	14	51489622	51489622	+	Silent	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189025800	189025800	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIOBP	11078	broad.mit.edu	37	22	38121216	38121216	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIOBP	11078	broad.mit.edu	37	22	38121216	38121216	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38225593	38225593	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38225593	38225593	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45825813	45825813	+	Missense_Mutation	SNP	G	T	T	rs147919263		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45786602	45786602	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45825813	45825813	+	Missense_Mutation	SNP	G	T	T	rs147919263		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142622549	142622549	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142622549	142622549	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98497181	98497181	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98497181	98497181	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51872757	51872757	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51872757	51872757	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN12	23554	broad.mit.edu	37	7	120450650	120450650	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN12	23554	broad.mit.edu	37	7	120450650	120450650	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN8	7103	broad.mit.edu	37	12	71533700	71533700	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN8	7103	broad.mit.edu	37	12	71533700	71533700	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC17	55761	broad.mit.edu	37	11	43413371	43413371	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC17	55761	broad.mit.edu	37	11	43413371	43413371	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94876366	94876366	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94876366	94876366	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBAL3	79861	broad.mit.edu	37	10	5446699	5446699	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBAL3	79861	broad.mit.edu	37	10	5446699	5446699	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBBP5	643224	broad.mit.edu	37	9	141070161	141070161	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	88911297	88911297	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	88911297	88911297	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UAP1	6675	broad.mit.edu	37	1	162536099	162536099	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UAP1	6675	broad.mit.edu	37	1	162536099	162536099	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN3	50613	broad.mit.edu	37	11	5529464	5529464	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN3	50613	broad.mit.edu	37	11	5529464	5529464	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCP2	7351	broad.mit.edu	37	11	73686562	73686562	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCP2	7351	broad.mit.edu	37	11	73686562	73686562	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A10	54575	broad.mit.edu	37	2	234545440	234545440	+	Missense_Mutation	SNP	T	A	A	rs141009803	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A10	54575	broad.mit.edu	37	2	234545440	234545440	+	Missense_Mutation	SNP	T	A	A	rs141009803	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70361645	70361645	+	5'Flank	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70361645	70361645	+	5'Flank	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK1	8408	broad.mit.edu	37	12	132399719	132399719	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK1	8408	broad.mit.edu	37	12	132399719	132399719	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43505661	43505661	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43505661	43505661	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17759401	17759401	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17759401	17759401	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54914593	54914593	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54914593	54914593	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5CL	222643	broad.mit.edu	37	6	40999725	40999725	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5CL	222643	broad.mit.edu	37	6	40999725	40999725	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216011423	216011423	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216011423	216011423	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55566576	55566576	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55566576	55566576	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17181066	17181066	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17181066	17181066	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61697761	61697761	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61697761	61697761	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP53	54532	broad.mit.edu	37	4	120169847	120169847	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP53	54532	broad.mit.edu	37	4	120169847	120169847	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6NL	9712	broad.mit.edu	37	10	11531201	11531201	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6NL	9712	broad.mit.edu	37	10	11531201	11531201	+	Silent	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP6	55813	broad.mit.edu	37	17	30207635	30207635	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP6	55813	broad.mit.edu	37	17	30207635	30207635	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37537114	37537114	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	54173138	54173138	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	101640477	101640477	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124078682	124078682	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18933005	18933005	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27828525	27828525	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48973182	48973182	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49092529	49092529	+	IGR	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51484208	51484208	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55322960	55322960	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58117189	58117189	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6015806	6015806	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71279684	71279684	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	25956340	25956340	+	IGR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33138766	33138766	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	52294962	52294962	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88177792	88177792	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19982057	19982057	+	IGR	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	35253103	35253103	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61212049	61212049	+	IGR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86929308	86929308	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	88547264	88547264	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90823558	90823558	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	99281971	99281971	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19411829	19411829	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52223828	52223828	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57508890	57508890	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	77639469	77639469	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20481926	20481926	+	IGR	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20481994	20481994	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21140830	21140830	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31174765	31174766	+	IGR	DNP	TG	AT	AT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	59845088	59845088	+	IGR	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84957462	84957472	+	IGR	DEL	GTGGCATCTGT	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32177847	32177850	+	IGR	DEL	TTGA	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489625	32489625	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489627	32489627	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489629	32489629	+	IGR	SNP	C	A	A	rs139543525	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33366734	33366734	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33372753	33372753	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33424934	33424934	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	35113571	35113571	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73974703	73974703	+	IGR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76269462	76269462	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11625796	11625796	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29542528	29542528	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29656213	29656213	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41901166	41901166	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	10952852	10952852	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20048621	20048621	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20413946	20413946	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22321785	22321785	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44971721	44971721	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	100288394	100288396	+	IGR	DEL	AAG	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111550529	111550529	+	IGR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146586840	146586840	+	IGR	SNP	G	T	T	rs142851635	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175014310	175014310	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	236275238	236275246	+	IGR	DEL	AACATTGAA	-	-	rs56332841		TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249066316	249066316	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79215073	79215073	+	IGR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14757178	14757178	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31635805	31635805	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31720556	31720556	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32434263	32434263	+	IGR	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16389583	16389583	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16953754	16953754	+	IGR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	26818504	26818504	+	IGR	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103027662	103027662	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106870048	106870048	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107313749	107313749	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108537407	108537407	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	113611487	113611487	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127315143	127315143	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132349795	132349795	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132383615	132383615	+	IGR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139659905	139659905	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210046909	210046909	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49142932	49142932	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52799550	52799550	+	IGR	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	60910284	60910284	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800449	91800449	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	114998256	114998256	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137600715	137600715	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163719576	163719576	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	175696002	175696002	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75264625	75264625	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87101001	87101001	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87372905	87372905	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88998469	88998469	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96068769	96068769	+	IGR	SNP	G	A	A	rs115231861	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	99944653	99944653	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165837336	165837336	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	57459374	57459374	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63683631	63683631	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70283752	70283752	+	IGR	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180165983	180165984	+	IGR	INS	-	C	C	rs2054696	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	54153127	54153127	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	108326085	108326085	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80778969	80778969	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42836279	42836279	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56297120	56297120	+	IGR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56372711	56372711	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56570284	56570284	+	IGR	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62518006	62518006	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62669668	62669668	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63020628	63020628	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63032667	63032667	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63475813	63475813	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9654769	9654769	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	107228310	107228310	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130741412	130741412	+	IGR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	35979109	35979109	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7215951	7215951	+	IGR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7885941	7885941	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	14041258	14041258	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	38453542	38453542	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68455119	68455119	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100792919	100792919	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106765704	106765704	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	114938164	114938164	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134096296	134096296	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134771978	134771978	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136743619	136743619	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	148890447	148890447	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37402119	37402119	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45918189	45918189	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	55661130	55661130	+	IGR	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72989073	72989073	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78579808	78579808	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92479271	92479271	+	IGR	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37537114	37537114	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	54173138	54173138	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	101640477	101640477	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124078682	124078682	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18933005	18933005	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48973182	48973182	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49092529	49092529	+	IGR	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51484208	51484208	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55322960	55322960	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56098714	56098714	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58117189	58117189	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6015806	6015806	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71279684	71279684	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	25956340	25956340	+	IGR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33138766	33138766	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	52294962	52294962	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58638379	58638379	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88177792	88177792	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19982057	19982057	+	IGR	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	35253103	35253103	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61212049	61212049	+	IGR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86929308	86929308	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	88547264	88547264	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90823558	90823558	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	99281971	99281971	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19411829	19411829	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52223828	52223828	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57508890	57508890	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	77639469	77639469	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20481926	20481926	+	IGR	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20481994	20481994	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21140830	21140830	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31174765	31174766	+	IGR	DNP	TG	AT	AT			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	59845088	59845088	+	IGR	DEL	G	-	-			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489625	32489625	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489627	32489627	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32857266	32857266	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33366734	33366734	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33372753	33372753	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33424934	33424934	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	35113571	35113571	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73974703	73974703	+	IGR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76269462	76269462	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11625796	11625796	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29542528	29542528	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29656213	29656213	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41901166	41901166	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	10952852	10952852	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20048621	20048621	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20413946	20413946	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22321785	22321785	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44971721	44971721	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111550529	111550529	+	IGR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146586840	146586840	+	IGR	SNP	G	T	T	rs142851635	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175014310	175014310	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249066316	249066316	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79215073	79215073	+	IGR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14757178	14757178	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31635805	31635805	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31720556	31720556	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32434263	32434263	+	IGR	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16389583	16389583	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16953754	16953754	+	IGR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	26818504	26818504	+	IGR	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103027662	103027662	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106870048	106870048	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107313749	107313749	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107580040	107580040	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108537407	108537407	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	113611487	113611487	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127315143	127315143	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132349795	132349795	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132383615	132383615	+	IGR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139659905	139659905	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210046909	210046909	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49142932	49142932	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52799550	52799550	+	IGR	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	60910284	60910284	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800449	91800449	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137600715	137600715	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163719576	163719576	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	175696002	175696002	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75264625	75264625	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87101001	87101001	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87372905	87372905	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88998469	88998469	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96068769	96068769	+	IGR	SNP	G	A	A	rs115231861	by1000genomes	TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	99944653	99944653	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	155476960	155476960	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165837336	165837336	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	57459374	57459374	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63355213	63355213	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63683631	63683631	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70283752	70283752	+	IGR	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	54153127	54153127	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56614863	56614863	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	108326085	108326085	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80778969	80778969	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42836279	42836279	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56297120	56297120	+	IGR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56372711	56372711	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56570284	56570284	+	IGR	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62518006	62518006	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62669668	62669668	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63020628	63020628	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63032667	63032667	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63475813	63475813	+	IGR	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9654769	9654769	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	107228310	107228310	+	IGR	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130741412	130741412	+	IGR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	35979109	35979109	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7215951	7215951	+	IGR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7885941	7885941	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	14041258	14041258	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	38453542	38453542	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68455119	68455119	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100792919	100792919	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106765704	106765704	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	114938164	114938164	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134096296	134096296	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136743619	136743619	+	IGR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	148890447	148890447	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37402119	37402119	+	IGR	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45918189	45918189	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	55661130	55661130	+	IGR	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72989073	72989073	+	IGR	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	7618834	7618834	+	IGR	SNP	T	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78579808	78579808	+	IGR	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92479271	92479271	+	IGR	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP7	6845	broad.mit.edu	37	X	155127652	155127652	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP7	6845	broad.mit.edu	37	X	155127652	155127652	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108311136	108311136	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108311136	108311136	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101185531	101185531	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101185531	101185531	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177632900	177632900	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177632900	177632900	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL1	51442	broad.mit.edu	37	X	135618242	135618242	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL1	51442	broad.mit.edu	37	X	135618242	135618242	+	Silent	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	86996060	86996060	+	3'UTR	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	86996060	86996060	+	3'UTR	SNP	T	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN2	8875	broad.mit.edu	37	6	133065704	133065704	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN2	8875	broad.mit.edu	37	6	133065704	133065704	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS26B	112936	broad.mit.edu	37	11	134095068	134095068	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS26B	112936	broad.mit.edu	37	11	134095068	134095068	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS37A	137492	broad.mit.edu	37	8	17125803	17125803	+	Silent	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38937851	38937851	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38937851	38937851	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK1	7443	broad.mit.edu	37	14	97342634	97342634	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK1	7443	broad.mit.edu	37	14	97342634	97342634	+	Intron	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR13	64743	broad.mit.edu	37	X	48457296	48457296	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR13	64743	broad.mit.edu	37	X	48457296	48457296	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR65	149465	broad.mit.edu	37	1	43638419	43638419	+	5'UTR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR65	149465	broad.mit.edu	37	1	43638419	43638419	+	5'UTR	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP2	8839	broad.mit.edu	37	20	43353577	43353577	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	5993675	5993675	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	5993675	5993675	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL1	6375	broad.mit.edu	37	1	168550395	168550395	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL1	6375	broad.mit.edu	37	1	168550395	168550395	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168106328	168106328	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168106328	168106328	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73070884	73070884	+	RNA	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73070884	73070884	+	RNA	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142054271	142054271	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142054271	142054271	+	Intron	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17202951	17202951	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17202951	17202951	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YLPM1	56252	broad.mit.edu	37	14	75265213	75265213	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YLPM1	56252	broad.mit.edu	37	14	75265213	75265213	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135756690	135756690	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135756690	135756690	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167051729	167051729	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED4	9889	broad.mit.edu	37	22	50277987	50277987	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED4	9889	broad.mit.edu	37	22	50277987	50277987	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB24	9841	broad.mit.edu	37	6	109798052	109798052	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB24	9841	broad.mit.edu	37	6	109798052	109798052	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC11	79844	broad.mit.edu	37	5	819583	819584	+	Intron	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC11	79844	broad.mit.edu	37	5	819583	819584	+	Intron	DNP	CC	AA	AA			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31650035	31650035	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31650035	31650035	+	Intron	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145157678	145157678	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145157678	145157678	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77618316	77618316	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77690535	77690535	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77765635	77765635	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77618316	77618316	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77690535	77690535	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77765635	77765635	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68249881	68249881	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68249881	68249881	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF167	55888	broad.mit.edu	37	3	44611702	44611702	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF167	55888	broad.mit.edu	37	3	44611702	44611702	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF192	7745	broad.mit.edu	37	6	28116623	28116623	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF192	7745	broad.mit.edu	37	6	28116623	28116623	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF223	7766	broad.mit.edu	37	19	44570092	44570092	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF223	7766	broad.mit.edu	37	19	44570092	44570092	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF343	79175	broad.mit.edu	37	20	2464182	2464182	+	Silent	SNP	A	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49525160	49525160	+	3'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49525160	49525160	+	3'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF445	353274	broad.mit.edu	37	3	44489616	44489616	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF445	353274	broad.mit.edu	37	3	44489616	44489616	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF502	91392	broad.mit.edu	37	3	44761745	44761745	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF502	91392	broad.mit.edu	37	3	44761745	44761745	+	5'UTR	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF618	114991	broad.mit.edu	37	9	116811997	116811997	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF618	114991	broad.mit.edu	37	9	116811997	116811997	+	Silent	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF626	199777	broad.mit.edu	37	19	20808148	20808148	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF626	199777	broad.mit.edu	37	19	20829050	20829050	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF626	199777	broad.mit.edu	37	19	20829050	20829050	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71592757	71592757	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71592757	71592757	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF699	374879	broad.mit.edu	37	19	9407936	9407936	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF699	374879	broad.mit.edu	37	19	9407936	9407936	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF773	374928	broad.mit.edu	37	19	58015904	58015904	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF773	374928	broad.mit.edu	37	19	58015904	58015904	+	Intron	SNP	G	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780A	284323	broad.mit.edu	37	19	40580836	40580836	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780A	284323	broad.mit.edu	37	19	40580836	40580836	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB3	84083	broad.mit.edu	37	2	135965470	135965470	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB3	84083	broad.mit.edu	37	2	135965470	135965470	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23159498	23159498	+	RNA	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17385500	17385500	+	5'Flank	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	120315033	120315033	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	120315062	120315062	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69362187	69362187	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9900733	9900733	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142124226	142124226	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142460999	142460999	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63370071	63370071	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12493896	12493896	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23159498	23159498	+	RNA	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	120315033	120315033	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	120315062	120315062	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69362187	69362187	+	Intron	SNP	G	C	C			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9900733	9900733	+	Intron	SNP	C	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142124226	142124226	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142460999	142460999	+	Intron	SNP	G	A	A			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63370071	63370071	+	Intron	SNP	A	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12493896	12493896	+	Intron	SNP	C	T	T			TCGA-44-2657-01A-01D-1105-08	TCGA-44-2657-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
