Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCB5	340273	broad.mit.edu	37	7	20739538	20739538	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101590383	101590383	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101590383	101590383	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC6P1	653190	broad.mit.edu	37	16	18597207	18597207	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF1	23	broad.mit.edu	37	6	30557817	30557817	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF1	23	broad.mit.edu	37	6	30557817	30557817	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM2	84448	broad.mit.edu	37	4	8022097	8022097	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35583093	35583093	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236925779	236925779	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236925779	236925779	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207452765	207452765	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207452765	207452765	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28212371	28212371	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28212371	28212371	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43825245	43825245	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43825245	43825245	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73149140	73149140	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73156846	73156846	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73186680	73186680	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73149140	73149140	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73156846	73156846	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AEN	64782	broad.mit.edu	37	15	89172497	89172497	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148035048	148035048	+	Intron	DEL	G	-	-			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148035048	148035048	+	Intron	DEL	G	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105407783	105407783	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP8L	26993	broad.mit.edu	37	19	15511732	15511732	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP8L	26993	broad.mit.edu	37	19	15511732	15511732	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91642045	91642045	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243809209	243809209	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243809209	243809209	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH7A1	501	broad.mit.edu	37	5	125912853	125912853	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH7A1	501	broad.mit.edu	37	5	125912853	125912853	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1L2	644974	broad.mit.edu	37	3	129811966	129811966	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1L2	644974	broad.mit.edu	37	3	129811966	129811966	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29751965	29751965	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPL	249	broad.mit.edu	37	1	21900147	21900147	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPL	249	broad.mit.edu	37	1	21900147	21900147	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGEL1	23357	broad.mit.edu	37	14	77257806	77257806	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGEL1	23357	broad.mit.edu	37	14	77257806	77257806	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD13C	81573	broad.mit.edu	37	1	70740273	70740273	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37481828	37481828	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29409389	29409389	+	3'UTR	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APCDD1	147495	broad.mit.edu	37	18	10471499	10471499	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APCDD1	147495	broad.mit.edu	37	18	10471499	10471499	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112162746	112162746	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112162746	112162746	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21266345	21266345	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68139538	68139538	+	Silent	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68139538	68139538	+	Silent	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF10L	55160	broad.mit.edu	37	1	17949602	17949602	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF10L	55160	broad.mit.edu	37	1	17949602	17949602	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155935547	155935547	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155935547	155935547	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157495270	157495270	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157495270	157495270	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35750491	35750491	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35750491	35750491	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177190046	177190046	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177190046	177190046	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB7	140460	broad.mit.edu	37	15	101186926	101186926	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197072028	197072028	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197072028	197072028	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176853725	176853725	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177001659	177001659	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176853725	176853725	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177001659	177001659	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG3	64422	broad.mit.edu	37	3	112255592	112255592	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193019010	193019010	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193019010	193019010	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B2	57198	broad.mit.edu	37	1	154315767	154315767	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B2	57198	broad.mit.edu	37	1	154315767	154315767	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70255663	70255663	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXIN1	8312	broad.mit.edu	37	16	343556	343556	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXIN1	8312	broad.mit.edu	37	16	343556	343556	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALT1	8708	broad.mit.edu	37	2	168725372	168725372	+	5'UTR	SNP	A	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11038767	11038767	+	3'UTR	SNP	A	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11038767	11038767	+	3'UTR	SNP	A	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1392740	1392740	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171481269	171481269	+	Silent	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS7	55212	broad.mit.edu	37	4	122782798	122782798	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS7	55212	broad.mit.edu	37	4	122782798	122782798	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP15	9210	broad.mit.edu	37	X	50659489	50659489	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP15	9210	broad.mit.edu	37	X	50659489	50659489	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL8	79908	broad.mit.edu	37	5	180326301	180326301	+	5'UTR	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56393545	56393545	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56393545	56393545	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf24	53838	broad.mit.edu	37	11	68031301	68031301	+	5'UTR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97158873	97158873	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97158873	97158873	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf42	90381	broad.mit.edu	37	15	90168849	90168849	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf42	90381	broad.mit.edu	37	15	90168849	90168849	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100331863	100331863	+	RNA	SNP	C	T	T	rs146847301	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100331863	100331863	+	RNA	SNP	C	T	T	rs146847301	by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf5	29965	broad.mit.edu	37	16	4563767	4563767	+	Silent	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf5	29965	broad.mit.edu	37	16	4563767	4563767	+	Silent	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf86	388284	broad.mit.edu	37	16	67702010	67702010	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf80	55028	broad.mit.edu	37	17	71233218	71233218	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30804833	30804833	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30804833	30804833	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf94	128710	broad.mit.edu	37	20	10603806	10603806	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf94	128710	broad.mit.edu	37	20	10603806	10603806	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40955390	40955390	+	Intron	SNP	G	C	C	rs113256961	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40955390	40955390	+	Intron	SNP	G	C	C	rs113256961	by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40899891	40899891	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40899891	40899891	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf43	257169	broad.mit.edu	37	9	116185836	116185836	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf43	257169	broad.mit.edu	37	9	116185836	116185836	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA1	759	broad.mit.edu	37	8	86253806	86253806	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA1	759	broad.mit.edu	37	8	86253806	86253806	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA8	767	broad.mit.edu	37	8	61193624	61193624	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181705621	181705621	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181719609	181719609	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181705621	181705621	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181719609	181719609	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48667692	48667692	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACYBP	27101	broad.mit.edu	37	1	174978975	174978975	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACYBP	27101	broad.mit.edu	37	1	174978975	174978975	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159163801	159163801	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159163801	159163801	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188216867	188216867	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188216867	188216867	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116275698	116275698	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116275698	116275698	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121973004	121973004	+	5'UTR	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121973004	121973004	+	5'UTR	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBS	875	broad.mit.edu	37	21	44479546	44479546	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX2	84733	broad.mit.edu	37	17	77755587	77755587	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX2	84733	broad.mit.edu	37	17	77755587	77755587	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D2A	57545	broad.mit.edu	37	4	15569349	15569349	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D2A	57545	broad.mit.edu	37	4	15569349	15569349	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL2	56267	broad.mit.edu	37	1	89408625	89408625	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL2	56267	broad.mit.edu	37	1	89408625	89408625	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67531445	67531445	+	3'UTR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67531445	67531445	+	3'UTR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83173836	83173836	+	Intron	SNP	G	C	C	rs143152920	by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73539147	73539147	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26915812	26915812	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26915812	26915812	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKAL1	54901	broad.mit.edu	37	6	21065233	21065233	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDT1	81620	broad.mit.edu	37	16	88871952	88871952	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR1	51816	broad.mit.edu	37	22	17680398	17680398	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR1	51816	broad.mit.edu	37	22	17680398	17680398	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48670747	48670747	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214821291	214821291	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CERKL	375298	broad.mit.edu	37	2	182521630	182521630	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CERKL	375298	broad.mit.edu	37	2	182521630	182521630	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93563198	93563198	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93563201	93563201	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93563198	93563198	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93563201	93563201	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136699878	136699878	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136699878	136699878	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP	8483	broad.mit.edu	37	15	65499310	65499310	+	Silent	SNP	G	A	A	rs146845325		TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP4	10970	broad.mit.edu	37	12	106632981	106632981	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP4	10970	broad.mit.edu	37	12	106632981	106632981	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86898148	86898148	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86898148	86898148	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC18B	497190	broad.mit.edu	37	16	74447154	74447154	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140122320	140122320	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140122320	140122320	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAH	8418	broad.mit.edu	37	6	25140282	25140282	+	5'Flank	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAH	8418	broad.mit.edu	37	6	25140282	25140282	+	5'Flank	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMPK2	129607	broad.mit.edu	37	2	6990180	6990180	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87591351	87591351	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87591351	87591351	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNIH	10175	broad.mit.edu	37	14	54896978	54896978	+	Splice_Site	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNIH	10175	broad.mit.edu	37	14	54896978	54896978	+	Splice_Site	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNN3	1266	broad.mit.edu	37	1	95392589	95392589	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2944464	2944464	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103477982	103477982	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103544261	103544261	+	Silent	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103477982	103477982	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103544261	103544261	+	Silent	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61956845	61956845	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139611252	139611252	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86196117	86196117	+	3'UTR	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137688344	137688344	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137688344	137688344	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130292827	130292827	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130292827	130292827	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47708333	47708333	+	Intron	SNP	A	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47708333	47708333	+	Intron	SNP	A	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47839920	47839920	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211455113	211455113	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1B	1375	broad.mit.edu	37	22	51014719	51014719	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34208795	34208795	+	Intron	SNP	C	T	T	rs115734138	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34285452	34285452	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34285452	34285452	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113246674	113246674	+	Silent	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113254006	113254006	+	Nonsense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113694628	113694628	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113246674	113246674	+	Silent	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113254006	113254006	+	Nonsense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113694628	113694628	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1G1	53944	broad.mit.edu	37	15	64495340	64495340	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1G1	53944	broad.mit.edu	37	15	64495340	64495340	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF2	1478	broad.mit.edu	37	X	100077639	100077640	+	Intron	DNP	GG	TA	TA			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148457367	148457367	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148457367	148457367	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADR	1525	broad.mit.edu	37	21	18933235	18933235	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5B	80777	broad.mit.edu	37	16	69458867	69458867	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5B	80777	broad.mit.edu	37	16	69458867	69458867	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH4	27128	broad.mit.edu	37	22	37708205	37708205	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH4	27128	broad.mit.edu	37	22	37708205	37708205	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM2	23500	broad.mit.edu	37	6	39869182	39869182	+	Silent	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM2	23500	broad.mit.edu	37	6	39869182	39869182	+	Silent	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72255950	72255950	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72255950	72255950	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59113521	59113521	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59113521	59113521	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAND5	199699	broad.mit.edu	37	19	13084333	13084333	+	Missense_Mutation	SNP	G	A	A	rs45513495	byFrequency;by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50278670	50278670	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50278670	50278670	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND3	22898	broad.mit.edu	37	8	142170817	142170817	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND3	22898	broad.mit.edu	37	8	142170817	142170817	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC4	120863	broad.mit.edu	37	12	100657686	100657686	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC4	120863	broad.mit.edu	37	12	100657686	100657686	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR14	8220	broad.mit.edu	37	22	19124931	19124931	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR14	8220	broad.mit.edu	37	22	19124931	19124931	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137282530	137282530	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137282530	137282530	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50213554	50213554	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96330222	96330222	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96330222	96330222	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH3	81624	broad.mit.edu	37	13	60667931	60667931	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH3	81624	broad.mit.edu	37	13	60737653	60737653	+	Intron	SNP	C	G	G	rs117782847	by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLL3	10683	broad.mit.edu	37	19	39991296	39991296	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLL3	10683	broad.mit.edu	37	19	39991296	39991296	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11790355	11790355	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11790355	11790355	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJA4	55466	broad.mit.edu	37	15	78558628	78558628	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJA4	55466	broad.mit.edu	37	15	78558628	78558628	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169483833	169483833	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169483833	169483833	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63099328	63099328	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99575505	99575505	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99575505	99575505	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116226096	116226096	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	97700641	97700641	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	97700641	97700641	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105459557	105459557	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105459557	105459557	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	183995661	183995661	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	183995661	183995661	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFR3B	22979	broad.mit.edu	37	2	25303081	25303081	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFR3B	22979	broad.mit.edu	37	2	25303081	25303081	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK3	9451	broad.mit.edu	37	2	88876190	88876190	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK3	9451	broad.mit.edu	37	2	88876190	88876190	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO2	63916	broad.mit.edu	37	20	45011971	45011971	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO2	63916	broad.mit.edu	37	20	45011971	45011971	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENGASE	64772	broad.mit.edu	37	17	77079716	77079716	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120633841	120633841	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120633841	120633841	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66201913	66201913	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93956601	93956601	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93956601	93956601	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV1	2115	broad.mit.edu	37	7	13950828	13950828	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93089858	93089858	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	592614	592614	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	592614	592614	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM119A	151194	broad.mit.edu	37	2	208489111	208489111	+	5'UTR	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM119A	151194	broad.mit.edu	37	2	208489111	208489111	+	5'UTR	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129B	64855	broad.mit.edu	37	9	130341170	130341170	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129B	64855	broad.mit.edu	37	9	130341170	130341170	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153A	285596	broad.mit.edu	37	5	177166286	177166286	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM154B	283726	broad.mit.edu	37	15	82574915	82574915	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM154B	283726	broad.mit.edu	37	15	82574915	82574915	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM186B	84070	broad.mit.edu	37	12	49998266	49998266	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM186B	84070	broad.mit.edu	37	12	49998266	49998266	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067177	190067177	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067891	190067891	+	Missense_Mutation	SNP	G	C	C	rs147799875		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067177	190067177	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067891	190067891	+	Missense_Mutation	SNP	G	C	C	rs147799875		TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10135025	10135025	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10135025	10135025	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163099771	163099771	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163099771	163099771	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92526040	92526040	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92526040	92526040	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8160759	8160759	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40363394	40363394	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP15	23307	broad.mit.edu	37	9	115965313	115965313	+	Silent	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP15	23307	broad.mit.edu	37	9	115965313	115965313	+	Silent	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152286349	152286349	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152286349	152286349	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240308563	240308563	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240308563	240308563	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3A	22862	broad.mit.edu	37	13	49752748	49752748	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3A	22862	broad.mit.edu	37	13	49752748	49752748	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK2	3607	broad.mit.edu	37	17	80529850	80529850	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP1	27086	broad.mit.edu	37	3	71026063	71026063	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP1	27086	broad.mit.edu	37	3	71026063	71026063	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29625899	29625900	+	Frame_Shift_Ins	INS	-	AT	AT			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44973886	44973886	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44973886	44973886	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17450471	17450471	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17450471	17450471	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161277951	161277951	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151337133	151337133	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151821395	151821395	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151821395	151821395	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAN	8139	broad.mit.edu	37	16	81387878	81387878	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBAP1	2630	broad.mit.edu	37	1	155186060	155186060	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEM	2669	broad.mit.edu	37	8	95265333	95265333	+	Silent	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEM	2669	broad.mit.edu	37	8	95265333	95265333	+	Silent	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGNBP2	79893	broad.mit.edu	37	17	34943642	34943642	+	Silent	SNP	C	T	T	rs142994076	byFrequency	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDN	342035	broad.mit.edu	37	15	51643270	51643270	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDN	342035	broad.mit.edu	37	15	51643270	51643270	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP1R	2740	broad.mit.edu	37	6	39040614	39040614	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP1R	2740	broad.mit.edu	37	6	39040614	39040614	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPS	8833	broad.mit.edu	37	3	155615703	155615703	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPS	8833	broad.mit.edu	37	3	155615703	155615703	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAM	57678	broad.mit.edu	37	10	113920368	113920368	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAM	57678	broad.mit.edu	37	10	113920368	113920368	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR109B	8843	broad.mit.edu	37	12	123201205	123201205	+	Missense_Mutation	SNP	G	A	A	rs148858491	by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100368684	100368684	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100368684	100368684	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37298809	37298809	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	10032335	10032336	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	10032335	10032336	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM3	2913	broad.mit.edu	37	7	86469163	86469163	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27510036	27510036	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HARS	3035	broad.mit.edu	37	5	140070879	140070879	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HARS	3035	broad.mit.edu	37	5	140070879	140070879	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR3	55027	broad.mit.edu	37	16	50134194	50134194	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR3	55027	broad.mit.edu	37	16	50134194	50134194	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELZ	9931	broad.mit.edu	37	17	65103287	65103287	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELZ	9931	broad.mit.edu	37	17	65103287	65103287	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63961971	63961971	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63961971	63961971	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H4E	8367	broad.mit.edu	37	6	26204930	26204930	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H4E	8367	broad.mit.edu	37	6	26204930	26204930	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKDC1	80201	broad.mit.edu	37	10	71008170	71008170	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKDC1	80201	broad.mit.edu	37	10	71008170	71008170	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DRB5	3127	broad.mit.edu	37	6	32557551	32557551	+	5'UTR	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186105683	186105683	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCLL1	54511	broad.mit.edu	37	6	55364093	55364093	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCLL1	54511	broad.mit.edu	37	6	55364093	55364093	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSF4	3299	broad.mit.edu	37	16	67200263	67200263	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	94973152	94973152	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	95012034	95012034	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	94973152	94973152	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA2	3440	broad.mit.edu	37	9	21385084	21385084	+	Missense_Mutation	SNP	A	T	T	rs150636116		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA2	3440	broad.mit.edu	37	9	21385084	21385084	+	Missense_Mutation	SNP	A	T	T	rs150636116		TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNG	3458	broad.mit.edu	37	12	68549134	68549134	+	Nonstop_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNG	3458	broad.mit.edu	37	12	68549134	68549134	+	Nonstop_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3118155	3118155	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3118155	3118155	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX1	79192	broad.mit.edu	37	5	3599727	3599727	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX1	79192	broad.mit.edu	37	5	3599727	3599727	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITFG3	83986	broad.mit.edu	37	16	309364	309364	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPKB	3707	broad.mit.edu	37	1	226924682	226924682	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPKB	3707	broad.mit.edu	37	1	226924682	226924682	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26596529	26596529	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26596529	26596529	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JARID2	3720	broad.mit.edu	37	6	15497370	15497370	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73847965	73847965	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75444442	75444442	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75444442	75444442	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118969655	118969656	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118969655	118969656	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154686464	154686465	+	Intron	DEL	GT	-	-	rs112796362		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS1	10657	broad.mit.edu	37	1	32504239	32504239	+	Intron	DEL	G	-	-			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS1	10657	broad.mit.edu	37	1	32504239	32504239	+	Intron	DEL	G	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0090	23065	broad.mit.edu	37	1	19563560	19563560	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0090	23065	broad.mit.edu	37	1	19563560	19563560	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0196	9897	broad.mit.edu	37	8	126067960	126067960	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0196	9897	broad.mit.edu	37	8	126067960	126067960	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0430	9665	broad.mit.edu	37	16	15729639	15729639	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0430	9665	broad.mit.edu	37	16	15729639	15729639	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0907	22889	broad.mit.edu	37	1	155896779	155896780	+	Intron	INS	-	TAGT	TAGT			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1257	57501	broad.mit.edu	37	3	128706348	128706348	+	Intron	SNP	G	A	A	rs112129449	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1539	80256	broad.mit.edu	37	9	35107649	35107650	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1539	80256	broad.mit.edu	37	9	35107649	35107650	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1958	158405	broad.mit.edu	37	9	115407879	115407879	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13A	63971	broad.mit.edu	37	6	17794775	17794775	+	Intron	DEL	A	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13B	23303	broad.mit.edu	37	8	28991503	28991503	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241676332	241676332	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10364654	10364655	+	Intron	INS	-	AGAC	AGAC			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10364654	10364655	+	Intron	INS	-	AGAC	AGAC			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39724056	39724056	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39545945	39545945	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39545945	39545945	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55328122	55328122	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55328122	55328122	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL14	57565	broad.mit.edu	37	18	30349754	30349754	+	Silent	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL14	57565	broad.mit.edu	37	18	30349754	30349754	+	Silent	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA6	23633	broad.mit.edu	37	1	32573644	32573644	+	5'UTR	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA6	23633	broad.mit.edu	37	1	32573644	32573644	+	5'UTR	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152733434	152733434	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT79	338785	broad.mit.edu	37	12	53223860	53223860	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT79	338785	broad.mit.edu	37	12	53223860	53223860	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-1	140258	broad.mit.edu	37	21	31768627	31768627	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-1	140258	broad.mit.edu	37	21	31768627	31768627	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54872443	54872443	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54872443	54872443	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4B	23185	broad.mit.edu	37	10	910104	910105	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4B	23185	broad.mit.edu	37	10	910104	910105	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS3	204219	broad.mit.edu	37	15	101019517	101019517	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHC	3948	broad.mit.edu	37	11	18434300	18434300	+	Silent	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHC	3948	broad.mit.edu	37	11	18434300	18434300	+	Silent	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPI	149998	broad.mit.edu	37	21	15561369	15561369	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPI	149998	broad.mit.edu	37	21	15561369	15561369	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPN	643418	broad.mit.edu	37	10	90526231	90526231	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284232	284232	broad.mit.edu	37	13	19435642	19435642	+	RNA	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284232	284232	broad.mit.edu	37	13	19435642	19435642	+	RNA	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC341056	341056	broad.mit.edu	37	11	122888845	122888845	+	RNA	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC341056	341056	broad.mit.edu	37	11	122888845	122888845	+	RNA	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78210937	78210937	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78210937	78210937	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728190	728190	broad.mit.edu	37	10	88975947	88975947	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728190	728190	broad.mit.edu	37	10	88975947	88975947	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23145731	23145731	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23145731	23145731	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62598911	62598911	+	Silent	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT1	26103	broad.mit.edu	37	10	85991733	85991733	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141032086	141032086	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141773418	141773419	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141819657	141819658	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141032086	141032086	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141122289	141122289	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141773418	141773419	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141819657	141819658	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70488886	70488886	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70225834	70225834	+	5'Flank	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70488886	70488886	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204588136	204588136	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204588136	204588136	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTK	4058	broad.mit.edu	37	15	41799788	41799788	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTK	4058	broad.mit.edu	37	15	41799788	41799788	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUC7L	55692	broad.mit.edu	37	16	242974	242974	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUC7L	55692	broad.mit.edu	37	16	242974	242974	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB10	139422	broad.mit.edu	37	X	27839787	27839787	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB10	139422	broad.mit.edu	37	X	27839787	27839787	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65456009	65456009	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65456009	65456009	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2B1	4125	broad.mit.edu	37	19	12761005	12761005	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2B1	4125	broad.mit.edu	37	19	12761005	12761005	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2B2	23324	broad.mit.edu	37	4	6612754	6612754	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2B2	23324	broad.mit.edu	37	4	6612754	6612754	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71267478	71267478	+	Silent	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71267478	71267478	+	Silent	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH10	162333	broad.mit.edu	37	17	60814179	60814179	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH10	162333	broad.mit.edu	37	17	60814179	60814179	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	187003540	187003540	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	187003540	187003540	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCAT	27349	broad.mit.edu	37	22	43537083	43537083	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCAT	27349	broad.mit.edu	37	22	43537083	43537083	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR518E	574487	broad.mit.edu	37	19	54230390	54230390	+	5'Flank	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR612	693197	broad.mit.edu	37	11	65211948	65211948	+	RNA	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23810997	23810997	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23810997	23810997	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2526502	2526502	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55530913	55530913	+	Silent	SNP	C	T	T	rs41521545	byFrequency	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL19	9801	broad.mit.edu	37	2	75881899	75881899	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL19	9801	broad.mit.edu	37	2	75881899	75881899	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS1	57509	broad.mit.edu	37	8	17573570	17573570	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29600241	29600241	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10213124	10213124	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10424643	10424643	+	Missense_Mutation	SNP	C	A	A	rs34161789	byFrequency;by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10439778	10439778	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10424643	10424643	+	Missense_Mutation	SNP	C	A	A	rs34161789	byFrequency;by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23899060	23899060	+	Silent	SNP	G	T	T	rs735712	byFrequency;by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23899060	23899060	+	Silent	SNP	G	T	T	rs735712	byFrequency;by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10297637	10297637	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10297637	10297637	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123375980	123375980	+	Silent	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123375980	123375980	+	Silent	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16891481	16891492	+	Intron	DEL	GAAGGAAGGAGA	-	-	rs144143593	by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47406710	47406710	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47406710	47406710	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101720265	101720266	+	Intron	DNP	CA	AT	AT			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78582297	78582297	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145663098	145663098	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145663098	145663098	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	146232655	146232655	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	146232714	146232714	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA2	10499	broad.mit.edu	37	8	71036821	71036821	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA2	10499	broad.mit.edu	37	8	71036821	71036821	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124832634	124832634	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA5	4698	broad.mit.edu	37	7	123190666	123190666	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA5	4698	broad.mit.edu	37	7	123190666	123190666	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK8	284086	broad.mit.edu	37	17	27065114	27065114	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20968951	20968951	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20968951	20968951	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25459484	25459484	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7065231	7065231	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7065231	7065231	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTUM	147111	broad.mit.edu	37	17	79916813	79916814	+	Frame_Shift_Ins	INS	-	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115394055	115394055	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115394055	115394055	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP1	8829	broad.mit.edu	37	10	33543158	33543158	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP1	8829	broad.mit.edu	37	10	33543158	33543158	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSF	4905	broad.mit.edu	37	17	44770478	44770478	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN5P2	260294	broad.mit.edu	37	7	72419928	72419928	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1B	93034	broad.mit.edu	37	2	18766493	18766493	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1B	93034	broad.mit.edu	37	2	18766493	18766493	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156785953	156785953	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156785953	156785953	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD1	84955	broad.mit.edu	37	8	110287767	110287767	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD1	84955	broad.mit.edu	37	8	110287767	110287767	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161953812	161953812	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161953812	161953812	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPTC	26254	broad.mit.edu	37	1	203468032	203468032	+	Intron	SNP	A	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G7	390265	broad.mit.edu	37	11	123909592	123909592	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G7	390265	broad.mit.edu	37	11	123909592	123909592	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123893833	123893833	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123893833	123893833	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1D4	8385	broad.mit.edu	37	17	2966252	2966252	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1D4	8385	broad.mit.edu	37	17	2966252	2966252	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L3	391192	broad.mit.edu	37	1	248224306	248224306	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L3	391192	broad.mit.edu	37	1	248224306	248224306	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L8	391190	broad.mit.edu	37	1	248112482	248112482	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248636980	248636980	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248636980	248636980	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24905869	24905869	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACS1	55690	broad.mit.edu	37	11	66009153	66009153	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACS1	55690	broad.mit.edu	37	11	66009153	66009153	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112625307	112625307	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91238448	91238449	+	Intron	DNP	AG	CT	CT			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55587214	55587214	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55721652	55721652	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55955474	55955474	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55587214	55587214	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55721652	55721652	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55955474	55955474	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47775559	47775559	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71444881	71444881	+	Silent	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71444881	71444881	+	Silent	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK2	5126	broad.mit.edu	37	20	17434237	17434237	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PC	5091	broad.mit.edu	37	11	66618624	66618624	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PC	5091	broad.mit.edu	37	11	66618624	66618624	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72293701	72293701	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144951961	144951961	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6B	5158	broad.mit.edu	37	4	647477	647477	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70162582	70162582	+	Intron	DEL	C	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41967041	41967041	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41967041	41967041	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57327504	57327504	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57327504	57327504	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100998942	100998942	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF2	5253	broad.mit.edu	37	9	96416742	96416742	+	Silent	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF2	5253	broad.mit.edu	37	9	96416742	96416742	+	Silent	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB3	653583	broad.mit.edu	37	19	44006275	44006275	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110477349	110477349	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110477349	110477349	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51917746	51917746	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKLR	5313	broad.mit.edu	37	1	155261781	155261781	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKLR	5313	broad.mit.edu	37	1	155261781	155261781	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8731494	8731495	+	Intron	DNP	CG	TC	TC	rs78979354	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8731494	8731495	+	Intron	DNP	CG	TC	TC	rs78979354	by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242253060	242253060	+	3'UTR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242253060	242253060	+	3'UTR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151152230	151152230	+	Silent	SNP	T	C	C	rs143818607	byFrequency;by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131870004	131870004	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131887644	131887644	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131870004	131870004	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131887644	131887644	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118236530	118236530	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118236530	118236530	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121187353	121187353	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121187353	121187353	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14522138	14522138	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3C	55012	broad.mit.edu	37	14	35590990	35590990	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3C	55012	broad.mit.edu	37	14	35590990	35590990	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP6C	5537	broad.mit.edu	37	9	127923295	127923295	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRCD	768206	broad.mit.edu	37	17	74527240	74527240	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRCD	768206	broad.mit.edu	37	17	74527240	74527240	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23524575	23524575	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23524575	23524575	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57244775	57244775	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROL1	58503	broad.mit.edu	37	4	71275347	71275347	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROL1	58503	broad.mit.edu	37	4	71275347	71275347	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150301011	150301011	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF6	24148	broad.mit.edu	37	20	62630480	62630480	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF6	24148	broad.mit.edu	37	20	62630480	62630480	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPSAP1	5635	broad.mit.edu	37	17	74340920	74340920	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD14	10213	broad.mit.edu	37	2	162251580	162251580	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11586663	11586664	+	Intron	INS	-	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214556633	214556633	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214556633	214556633	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198703600	198703600	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198703600	198703600	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRF	5792	broad.mit.edu	37	1	44057085	44057085	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128404945	128404945	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128404945	128404945	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15704359	15704359	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40980917	40980917	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40980917	40980917	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL3	25945	broad.mit.edu	37	3	110852501	110852501	+	Silent	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB18	22931	broad.mit.edu	37	10	27822645	27822645	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB18	22931	broad.mit.edu	37	10	27822645	27822645	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB41	347517	broad.mit.edu	37	X	69504378	69504378	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB41	347517	broad.mit.edu	37	X	69504378	69504378	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAET1K	646024	broad.mit.edu	37	6	150322802	150322802	+	RNA	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAET1K	646024	broad.mit.edu	37	6	150322802	150322802	+	RNA	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP6	26953	broad.mit.edu	37	9	6013604	6013604	+	Silent	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GDS1	5910	broad.mit.edu	37	4	99363413	99363413	+	3'UTR	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARRES3	5920	broad.mit.edu	37	11	63312067	63312067	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178310735	178310735	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178412214	178412214	+	Silent	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178310735	178310735	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178412214	178412214	+	Silent	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H1	149041	broad.mit.edu	37	1	173915513	173915513	+	Intron	SNP	T	C	C	rs142215220	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCOR1	23186	broad.mit.edu	37	14	103129146	103129146	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79349386	79349386	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103629460	103629460	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72945023	72945023	+	Silent	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72945023	72945023	+	Silent	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHPN2	85415	broad.mit.edu	37	19	33493529	33493529	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72960066	72960066	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT1	6016	broad.mit.edu	37	1	155874285	155874285	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT1	6016	broad.mit.edu	37	1	155874285	155874285	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144A	9781	broad.mit.edu	37	2	7122777	7122777	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30339448	30339448	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF212	285498	broad.mit.edu	37	4	1066945	1066945	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF212	285498	broad.mit.edu	37	4	1066945	1066945	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1L	23322	broad.mit.edu	37	16	53682886	53682886	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1L	23322	broad.mit.edu	37	16	53682886	53682886	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL4	6124	broad.mit.edu	37	15	66795413	66795413	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL4	6124	broad.mit.edu	37	15	66795413	66795413	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS19BP1	91582	broad.mit.edu	37	22	39928598	39928598	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6	6194	broad.mit.edu	37	9	19378288	19378288	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6	6194	broad.mit.edu	37	9	19378288	19378288	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSF1	51773	broad.mit.edu	37	11	77445837	77445837	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSF1	51773	broad.mit.edu	37	11	77445837	77445837	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108913209	108913209	+	3'UTR	SNP	C	G	G	rs72680426	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108913209	108913209	+	3'UTR	SNP	C	G	G	rs72680426	by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO4	343637	broad.mit.edu	37	20	947922	947922	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO4	343637	broad.mit.edu	37	20	947922	947922	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237880668	237880668	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237923196	237923196	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237774123	237774124	+	Frame_Shift_Ins	INS	-	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237870246	237870246	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237880668	237880668	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237923196	237923196	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33825665	33825665	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	166010962	166010962	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	166010962	166010962	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL1	57410	broad.mit.edu	37	11	65305955	65305955	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23B	10483	broad.mit.edu	37	20	18523047	18523047	+	Splice_Site	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23B	10483	broad.mit.edu	37	20	18523047	18523047	+	Splice_Site	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83634563	83634563	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83634563	83634563	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9136543	9136543	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9136543	9136543	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101080533	101080533	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101085252	101085252	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101080533	101080533	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101085252	101085252	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT9	10801	broad.mit.edu	37	17	75489176	75489176	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61262141	61262141	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPING1	710	broad.mit.edu	37	11	57367768	57367768	+	Silent	SNP	C	T	T	rs150601964	byFrequency	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7326244	7326244	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7326244	7326244	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS18	25957	broad.mit.edu	37	6	99851649	99851649	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14094973	14094973	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT2	51092	broad.mit.edu	37	11	117052850	117052851	+	Intron	INS	-	CTCGAGAA	CTCGAGAA	rs138604129	by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLECP3	284367	broad.mit.edu	37	19	51670842	51670842	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46257356	46257356	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46257356	46257356	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48527321	48527321	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48527321	48527321	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A2	9058	broad.mit.edu	37	17	26822793	26822793	+	Missense_Mutation	SNP	G	A	A	rs11568476	byFrequency	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A1	6566	broad.mit.edu	37	1	113464874	113464874	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A5	283652	broad.mit.edu	37	15	48426860	48426860	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A14	144195	broad.mit.edu	37	12	8023640	8023640	+	5'UTR	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18289671	18289671	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18289671	18289671	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74477490	74477490	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74477490	74477490	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51868922	51868922	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51868922	51868922	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21317749	21317749	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70594557	70594557	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70594557	70594557	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11135100	11135100	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11135100	11135100	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25310219	25310219	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25333729	25333729	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25310219	25310219	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121648048	121648048	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX25	83891	broad.mit.edu	37	4	186244912	186244912	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX25	83891	broad.mit.edu	37	4	186244912	186244912	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108430970	108430970	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108430970	108430970	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA8	145946	broad.mit.edu	37	15	97328458	97328458	+	3'UTR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA8	145946	broad.mit.edu	37	15	97328458	97328458	+	3'UTR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINLW1	57119	broad.mit.edu	37	20	44171587	44171587	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIRE1	56907	broad.mit.edu	37	18	12506572	12506572	+	Silent	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIRE1	56907	broad.mit.edu	37	18	12506572	12506572	+	Silent	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRY4	81848	broad.mit.edu	37	5	141693948	141693948	+	Silent	SNP	G	A	A	rs145360326	byFrequency	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRY4	81848	broad.mit.edu	37	5	141693948	141693948	+	Silent	SNP	G	A	A	rs145360326	byFrequency	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158609691	158609691	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158609691	158609691	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A1	6715	broad.mit.edu	37	5	6634007	6634007	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSRP1	6749	broad.mit.edu	37	11	57100472	57100472	+	Silent	SNP	G	A	A	rs113062066	byFrequency;by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST13	6767	broad.mit.edu	37	22	41246783	41246783	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST13	6767	broad.mit.edu	37	22	41246783	41246783	+	Intron	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBP	10617	broad.mit.edu	37	2	74089281	74089281	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD7	56910	broad.mit.edu	37	2	96861114	96861114	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1220629	1220629	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1220706	1220706	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48897166	48897166	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48897166	48897166	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120764165	120764165	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70539460	70539460	+	Silent	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70539460	70539460	+	Silent	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYK	6850	broad.mit.edu	37	9	93629549	93629549	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYK	6850	broad.mit.edu	37	9	93629549	93629549	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32631306	32631306	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32631306	32631306	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120814149	120814149	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120814149	120814149	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARBP1	6894	broad.mit.edu	37	1	234536951	234536951	+	Missense_Mutation	SNP	G	C	C	rs144896311	byFrequency	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D29	26083	broad.mit.edu	37	17	28887555	28887555	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17349630	17349630	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17349630	17349630	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBR1	10716	broad.mit.edu	37	2	162279767	162279767	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85422434	85422434	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD10	126668	broad.mit.edu	37	1	154516513	154516513	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD10	126668	broad.mit.edu	37	1	154516513	154516513	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT3	64518	broad.mit.edu	37	17	15211780	15211780	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEK	7010	broad.mit.edu	37	9	27210459	27210459	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134024061	134024061	+	Intron	DEL	T	-	-			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134024061	134024061	+	Intron	DEL	T	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169621556	169621556	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169621556	169621556	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	72039385	72039385	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	72039385	72039385	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11501681	11501681	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11633039	11633039	+	Silent	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11501681	11501681	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11633039	11633039	+	Silent	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137988829	137988829	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLCD1	116238	broad.mit.edu	37	17	27052285	27052285	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLCD1	116238	broad.mit.edu	37	17	27052285	27052285	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC3	342125	broad.mit.edu	37	15	81625717	81625717	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC8	147138	broad.mit.edu	37	17	76130576	76130576	+	Silent	SNP	C	T	T	rs149203228	byFrequency	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132C	92293	broad.mit.edu	37	12	128899948	128899948	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM184C	55751	broad.mit.edu	37	4	148555131	148555131	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM184C	55751	broad.mit.edu	37	4	148555131	148555131	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM82	388595	broad.mit.edu	37	1	16069342	16069342	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNK2	10188	broad.mit.edu	37	3	195613814	195613814	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNK2	10188	broad.mit.edu	37	3	195613814	195613814	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6C	57690	broad.mit.edu	37	17	76060902	76060902	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6C	57690	broad.mit.edu	37	17	76060902	76060902	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577097	7577097	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577097	7577097	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42244272	42244272	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42244278	42244279	+	Intron	INS	-	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42244272	42244272	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDMT1	1787	broad.mit.edu	37	10	17195622	17195622	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDMT1	1787	broad.mit.edu	37	10	17195622	17195622	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123957835	123957835	+	Intron	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73012639	73012639	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM37	4591	broad.mit.edu	37	17	57134503	57134503	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC1	7220	broad.mit.edu	37	3	142503717	142503717	+	Nonsense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC1	7220	broad.mit.edu	37	3	142503717	142503717	+	Nonsense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31769395	31769395	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC23	64927	broad.mit.edu	37	15	99759062	99759062	+	Intron	SNP	A	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC23	64927	broad.mit.edu	37	15	99759062	99759062	+	Intron	SNP	A	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC26	79989	broad.mit.edu	37	7	138851548	138851548	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC26	79989	broad.mit.edu	37	7	138851548	138851548	+	Intron	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL5	23093	broad.mit.edu	37	14	76186179	76186179	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL5	23093	broad.mit.edu	37	14	76186179	76186179	+	Intron	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179600341	179600341	+	Silent	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179600341	179600341	+	Silent	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA4B	80086	broad.mit.edu	37	2	220134997	220134997	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC11	51061	broad.mit.edu	37	16	11827847	11827847	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC11	51061	broad.mit.edu	37	16	11827847	11827847	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2J1	51465	broad.mit.edu	37	6	90042806	90042806	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR1	197131	broad.mit.edu	37	15	43398254	43398254	+	5'UTR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN11	91544	broad.mit.edu	37	1	26620937	26620937	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17746954	17746954	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35384224	35384224	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35384224	35384224	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35605995	35605995	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35605995	35605995	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229779384	229779384	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229779384	229779384	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP36	57602	broad.mit.edu	37	17	76832158	76832158	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11964023	11964023	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106782445	106782445	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106782445	106782445	+	Intron	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111440810	111440810	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	32477541	32477541	+	IGR	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37626427	37626427	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42385707	42385722	+	IGR	DEL	AATGGAATCATCATTA	-	-	rs33914712		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42392302	42392302	+	IGR	DEL	G	-	-	rs72505279		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	93426602	93426602	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	4207213	4207213	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90644718	90644718	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20169943	20169943	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20834038	20834038	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22482640	22482642	+	IGR	DEL	TGT	-	-	rs140253182		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	11336596	11336596	+	IGR	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32368335	32368335	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34408261	34408261	+	IGR	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60216831	60216831	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	24412281	24412281	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111390842	111390842	+	IGR	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143361967	143361967	+	IGR	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157678883	157678883	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249065783	249065783	+	IGR	SNP	T	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	2620367	2620368	+	IGR	INS	-	T	T	rs143571734		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	5273010	5273010	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9827000	9827001	+	IGR	INS	-	T	T	rs71227029		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349504	16349504	+	IGR	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	143613226	143613226	+	IGR	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	184472535	184472535	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	207284250	207284250	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58687762	58687762	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	15182888	15182888	+	IGR	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82856226	82856226	+	IGR	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96338457	96338457	+	IGR	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49099485	49099489	+	IGR	DEL	CTCCT	-	-	rs62641946		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63683604	63683604	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29837027	29837027	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	102901544	102901544	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	133318815	133318815	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	145812023	145812023	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	153219896	153219896	+	IGR	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28751519	28751519	+	IGR	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112378122	112378122	+	IGR	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56431387	56431387	+	IGR	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88801898	88801898	+	IGR	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	72653136	72653137	+	IGR	INS	-	TGCAATGGAA	TGCAATGGAA	rs76925086		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134808685	134808685	+	IGR	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25212536	25212536	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13483364	13483364	+	IGR	DEL	T	-	-			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111440810	111440810	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	120037392	120037392	+	IGR	SNP	G	T	T	rs139874709	by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	32477541	32477541	+	IGR	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37626427	37626427	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38185629	38185629	+	IGR	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42400455	42400455	+	IGR	DEL	T	-	-	rs71264011		TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65804897	65804897	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	93426602	93426602	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	116000215	116000215	+	IGR	DEL	A	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	4207213	4207213	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	7759985	7759985	+	IGR	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	69982503	69982503	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90644718	90644718	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90823858	90823858	+	IGR	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20374126	20374126	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82129256	82129256	+	IGR	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20169943	20169943	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21140780	21140781	+	IGR	DNP	GC	TT	TT			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	11336596	11336596	+	IGR	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32368335	32368335	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489507	32489507	+	IGR	SNP	G	T	T	rs147252789	by1000genomes	TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34720319	34720319	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60216831	60216831	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	24412281	24412281	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111390842	111390842	+	IGR	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121484729	121484729	+	IGR	DEL	C	-	-	rs112834061		TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143361967	143361967	+	IGR	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148853943	148853943	+	IGR	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148902546	148902546	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157678883	157678883	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	176200599	176200599	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187532144	187532144	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249065783	249065783	+	IGR	SNP	T	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	5273010	5273010	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10862789	10862789	+	IGR	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349504	16349504	+	IGR	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17008539	17008539	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117484359	117484359	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132890540	132890540	+	IGR	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	137302402	137302402	+	IGR	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	143613226	143613226	+	IGR	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	184472535	184472535	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	207284250	207284250	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210044481	210044481	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	42047174	42047174	+	IGR	DEL	G	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58687762	58687762	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	63335497	63335497	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	15182888	15182888	+	IGR	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	1947773	1947773	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	35257259	35257259	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82856226	82856226	+	IGR	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96338457	96338457	+	IGR	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117300390	117300390	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	16362706	16362706	+	IGR	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63683604	63683604	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882675	29882676	+	IGR	DNP	CC	AA	AA			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	102901544	102901544	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112938256	112938256	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	133318815	133318815	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	145812023	145812023	+	IGR	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	153219896	153219896	+	IGR	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28751519	28751519	+	IGR	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112378122	112378122	+	IGR	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53256694	53256694	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	81183087	81183087	+	IGR	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61260561	61260561	+	IGR	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88801898	88801898	+	IGR	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134808685	134808685	+	IGR	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25212536	25212536	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45842840	45842840	+	IGR	DEL	C	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	58011181	58011181	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64993240	64993240	+	IGR	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28733657	28733657	+	IGR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177604975	177604975	+	3'UTR	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177604975	177604975	+	3'UTR	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12406759	12406759	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12406759	12406759	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS16	64601	broad.mit.edu	37	20	2846784	2846784	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3A	146177	broad.mit.edu	37	16	22151410	22151410	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3A	146177	broad.mit.edu	37	16	22151410	22151410	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA5A	4013	broad.mit.edu	37	11	124012559	124012559	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6059022	6059022	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70853343	70853343	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR75	84128	broad.mit.edu	37	2	190328384	190328384	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR75	84128	broad.mit.edu	37	2	190328384	190328384	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR78	79819	broad.mit.edu	37	1	67279867	67279867	+	Intron	DEL	A	-	-			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR89	112840	broad.mit.edu	37	14	64065716	64065716	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR89	112840	broad.mit.edu	37	14	64065716	64065716	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT7B	7477	broad.mit.edu	37	22	46345933	46345933	+	Silent	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT7B	7477	broad.mit.edu	37	22	46345933	46345933	+	Silent	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	5983834	5983834	+	5'UTR	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73063798	73063798	+	RNA	SNP	T	C	C			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73063798	73063798	+	RNA	SNP	T	C	C			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP1	7511	broad.mit.edu	37	10	111642213	111642213	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP1	7511	broad.mit.edu	37	10	111642213	111642213	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142103586	142103586	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142103586	142103586	+	Intron	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77763566	77763566	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77763566	77763566	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP106	64397	broad.mit.edu	37	15	42713352	42713352	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106813655	106813655	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106813655	106813655	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40554749	40554749	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40554749	40554749	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF438	220929	broad.mit.edu	37	10	31137569	31137569	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF438	220929	broad.mit.edu	37	10	31137569	31137569	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57188680	57188680	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57188680	57188680	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF530	348327	broad.mit.edu	37	19	58111475	58111475	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF609	23060	broad.mit.edu	37	15	64937304	64937305	+	Intron	INS	-	CCTT	CCTT	rs7163358	by1000genomes	TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF687	57592	broad.mit.edu	37	1	151259952	151259952	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF687	57592	broad.mit.edu	37	1	151259952	151259952	+	Silent	SNP	G	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57829576	57829576	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57829576	57829576	+	Silent	SNP	C	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNHIT3	9326	broad.mit.edu	37	17	34842536	34842536	+	5'UTR	SNP	A	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNHIT3	9326	broad.mit.edu	37	17	34842536	34842536	+	5'UTR	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30953319	30953319	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20193523	20193523	+	5'Flank	SNP	A	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25481174	25481175	+	5'Flank	DNP	CT	AG	AG			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	110425	110425	+	Intron	DEL	G	-	-	rs28886940		TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186697796	186697796	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89428195	89428195	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89533751	89533751	+	RNA	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90025205	90025205	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90259805	90259805	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69362251	69362251	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142099446	142099446	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	81240554	81240554	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	5950	5950	+	5'UTR	SNP	G	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30953319	30953319	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20193523	20193523	+	5'Flank	SNP	A	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186697796	186697796	+	Intron	SNP	T	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89428195	89428195	+	Intron	SNP	C	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89533751	89533751	+	RNA	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89987185	89987185	+	Intron	SNP	A	G	G			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90025205	90025205	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90259805	90259805	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69362251	69362251	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142099446	142099446	+	Intron	SNP	C	A	A			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	81240554	81240554	+	Intron	SNP	G	T	T			TCGA-55-1596-01A-01W-0928-08	TCGA-55-1596-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
