Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CSMD2	114784	broad.mit.edu	36	1	33843510	33843510	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33843510	33843510	CSMD2	1	C	C	A	26
MACF1	23499	broad.mit.edu	36	1	39626601	39626601	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39626601	39626601	MACF1	1	A	A	G	2
IPO13	9670	broad.mit.edu	36	1	44196337	44196337	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44196337	44196337	IPO13	1	G	G	A	48
SRSF11	9295	broad.mit.edu	36	1	70488228	70488228	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70488228	70488228	SRSF11	1	G	G	C	33
KPRP	448834	broad.mit.edu	36	1	151000175	151000175	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	151000175	151000175	KPRP	1	G	G	A	38
USH2A	7399	broad.mit.edu	36	1	213915145	213915145	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	213915145	213915145	USH2A	1	T	T	C	52
OR2T5	401993	broad.mit.edu	36	1	246718654	246718654	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	246718654	246718654	OR2T5	1	G	G	C	48
GAD2	2572	broad.mit.edu	36	10	26602626	26602626	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26602626	26602626	GAD2	10	G	G	T	42
ADAMTS14	140766	broad.mit.edu	36	10	72138484	72138484	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	72138484	72138484	ADAMTS14	10	G	G	C	44
ZNF215	7762	broad.mit.edu	36	11	6920968	6920968	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6920968	6920968	ZNF215	11	C	C	G	24
SBF2	81846	broad.mit.edu	36	11	9767406	9767406	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	9767406	9767406	SBF2	11	C	C	T	32
METT5D1	196074	broad.mit.edu	36	11	28091635	28091635	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	28091635	28091635	METT5D1	11	T	T	G	50
TMEM109	79073	broad.mit.edu	36	11	60443814	60443814	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	60443814	60443814	TMEM109	11	C	C	T	24
CHD4	1108	broad.mit.edu	36	12	6571219	6571219	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6571219	6571219	CHD4	12	C	C	A	21
ESYT1	23344	broad.mit.edu	36	12	54817331	54817331	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54817331	54817331	ESYT1	12	G	G	C	43
NACA	4666	broad.mit.edu	36	12	55394411	55394411	+	Splice_Site_SNP	SNP	A	A	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	55394411	55394411	NACA	12	A	A	T	14
C12orf29	91298	broad.mit.edu	36	12	86963564	86963564	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	86963564	86963564	C12orf29	12	G	G	A	46
EXOC5	10640	broad.mit.edu	36	14	56768034	56768034	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56768034	56768034	EXOC5	14	A	A	T	12
CCDC88C	440193	broad.mit.edu	36	14	90815397	90815397	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	90815397	90815397	CCDC88C	14	C	C	T	23
AHNAK2	113146	broad.mit.edu	36	14	104487289	104487289	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	104487289	104487289	AHNAK2	14	C	C	G	17
RYR3	6263	broad.mit.edu	36	15	31646215	31646215	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	31646215	31646215	RYR3	15	G	G	A	46
CSK	1445	broad.mit.edu	36	15	72881724	72881724	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	72881724	72881724	CSK	15	G	G	T	34
MGRN1	23295	broad.mit.edu	36	16	4640457	4640457	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	4640457	4640457	MGRN1	16	T	T	G	55
MYH11	4629	broad.mit.edu	36	16	15751638	15751638	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15751638	15751638	MYH11	16	A	A	C	7
GOSR1	9527	broad.mit.edu	36	17	25871136	25871136	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	25871136	25871136	GOSR1	17	C	C	T	29
uc002igz.2	284071	broad.mit.edu	36	17	40100965	40100965	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	40100965	40100965	uc002igz.2	17	T	T	C	56
MARCH2	51257	broad.mit.edu	36	19	8409305	8409305	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	8409305	8409305	MARCH2	19	G	G	T	37
ZNF20	7568	broad.mit.edu	36	19	12105390	12105390	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	12105390	12105390	ZNF20	19	C	C	G	17
ZNF708	7562	broad.mit.edu	36	19	21283944	21283944	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	21283944	21283944	ZNF708	19	T	T	C	54
GSK3A	2931	broad.mit.edu	36	19	47428573	47428573	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47428573	47428573	GSK3A	19	G	G	C	48
ZNF45	7596	broad.mit.edu	36	19	49110073	49110073	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49110073	49110073	ZNF45	19	C	C	G	26
BIRC6	57448	broad.mit.edu	36	2	32541905	32541905	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	32541905	32541905	BIRC6	2	A	A	C	14
LTBP1	4052	broad.mit.edu	36	2	33353618	33353618	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	33353618	33353618	LTBP1	2	C	C	T	26
LRRTM4	80059	broad.mit.edu	36	2	77599824	77599824	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	77599824	77599824	LRRTM4	2	G	G	C	40
ST6GAL2	84620	broad.mit.edu	36	2	106789823	106789823	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	106789823	106789823	ST6GAL2	2	T	T	C	50
HSPA12B	116835	broad.mit.edu	36	20	3673632	3673632	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3673632	3673632	HSPA12B	20	G	G	T	34
ITSN1	6453	broad.mit.edu	36	21	34130729	34130729	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	34130729	34130729	ITSN1	21	G	G	C	41
PFKL	5211	broad.mit.edu	36	21	44571033	44571033	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44571033	44571033	PFKL	21	A	A	G	8
TCF20	6942	broad.mit.edu	36	22	40940142	40940142	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40940142	40940142	TCF20	22	G	G	T	41
WNT7B	7477	broad.mit.edu	36	22	44705751	44705751	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44705751	44705751	WNT7B	22	G	G	C	42
KALRN	8997	broad.mit.edu	36	3	125615117	125615117	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	125615117	125615117	KALRN	3	G	G	C	41
PIK3R4	30849	broad.mit.edu	36	3	131925103	131925103	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	131925103	131925103	PIK3R4	3	C	C	T	26
EPHB1	2047	broad.mit.edu	36	3	136153129	136153129	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	136153129	136153129	EPHB1	3	C	C	A	20
CCDC39	339829	broad.mit.edu	36	3	181861186	181861186	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	181861186	181861186	CCDC39	3	T	T	C	64
KLHL24	54800	broad.mit.edu	36	3	184879744	184879744	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	184879744	184879744	KLHL24	3	C	C	G	17
GPRIN3	285513	broad.mit.edu	36	4	90389357	90389357	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	90389357	90389357	GPRIN3	4	T	T	G	63
FAT1	2195	broad.mit.edu	36	4	187786453	187786453	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	187786453	187786453	FAT1	4	G	G	C	38
ANKRD55	79722	broad.mit.edu	36	5	55434103	55434103	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55434103	55434103	ANKRD55	5	G	G	T	44
PDLIM7	9260	broad.mit.edu	36	5	176843490	176843490	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	176843490	176843490	PDLIM7	5	G	G	C	44
BACH2	60468	broad.mit.edu	36	6	90716963	90716963	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	90716963	90716963	BACH2	6	T	T	G	57
MAP3K7	6885	broad.mit.edu	36	6	91335017	91335017	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	91335017	91335017	MAP3K7	6	T	T	C	49
HIVEP2	3097	broad.mit.edu	36	6	143135840	143135840	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	143135840	143135840	HIVEP2	6	A	A	G	4
SAMD9	54809	broad.mit.edu	36	7	92571071	92571071	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	92571071	92571071	SAMD9	7	C	C	G	32
PPP1R3A	5506	broad.mit.edu	36	7	113307084	113307084	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	113307084	113307084	PPP1R3A	7	G	G	C	46
POT1	25913	broad.mit.edu	36	7	124298223	124298223	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	124298223	124298223	POT1	7	A	A	G	4
C7orf29	113763	broad.mit.edu	36	7	149659030	149659030	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	149659030	149659030	C7orf29	7	G	G	C	41
NEFM	4741	broad.mit.edu	36	8	24829055	24829055	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	24829055	24829055	NEFM	8	G	G	A	43
PIGO	84720	broad.mit.edu	36	9	35081650	35081650	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	35081650	35081650	PIGO	9	C	C	T	23
ABCA1	19	broad.mit.edu	36	9	106631078	106631078	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	106631078	106631078	ABCA1	9	C	C	T	18
SPIN2A	54466	broad.mit.edu	36	X	57179003	57179003	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	57179003	57179003	SPIN2A	23	G	G	A	33
AWAT2	158835	broad.mit.edu	36	X	69178893	69178893	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	69178893	69178893	AWAT2	23	C	C	A	18
KPNA3	3839	broad.mit.edu	36	13	49181737	49181741	+	Frame_Shift_Del	DEL	AAGAG	-	-	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	49181737	49181741	KPNA3	13	AAGAG	-	-	13
ALOX12	239	broad.mit.edu	36	17	6854133	6854142	+	Frame_Shift_Del	DEL	CATCTCATGG	-	CATCTCATGG	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	6854133	6854142	ALOX12	17	CATCTCATGG	-	CATCTCATGG	21
TP53	7157	broad.mit.edu	36	17	7517744	7517745	+	Frame_Shift_Del	DEL	CT	-	CT	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	7517744	7517745	TP53	17	CT	-	CT	24
ZNF708	7562	broad.mit.edu	36	19	21268402	21268402	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-61-2109-01	TCGA-61-2109-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	21268402	21268402	ZNF708	19	G	-	G	47
