Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA8	10351	broad.mit.edu	37	17	66880001	66880001	+	Missense_Mutation	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66880001	66880001	+	Missense_Mutation	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD3	64746	broad.mit.edu	37	1	226376669	226376669	+	5'Flank	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD3	64746	broad.mit.edu	37	1	226376669	226376669	+	5'Flank	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACIN1	22985	broad.mit.edu	37	14	23547389	23547389	+	Silent	SNP	C	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACIN1	22985	broad.mit.edu	37	14	23547389	23547389	+	Silent	SNP	C	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPP	55	broad.mit.edu	37	3	132071639	132071639	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT1	139741	broad.mit.edu	37	X	127185520	127185520	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107122330	107122330	+	RNA	SNP	A	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107122330	107122330	+	RNA	SNP	A	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB1	104	broad.mit.edu	37	21	46595675	46595675	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131792844	131792844	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131792844	131792844	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100205476	100205476	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148044438	148044438	+	Missense_Mutation	SNP	T	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP2	116986	broad.mit.edu	37	12	58129302	58129303	+	Intron	INS	-	C	C	rs149789274	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62293403	62293403	+	Missense_Mutation	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62293403	62293403	+	Missense_Mutation	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125877379	125877379	+	Silent	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125877379	125877379	+	Silent	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3A1	218	broad.mit.edu	37	17	19641802	19641802	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMHR2	269	broad.mit.edu	37	12	53819725	53819726	+	Intron	DEL	TG	-	-			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41554286	41554286	+	Silent	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41554286	41554286	+	Silent	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114238791	114238791	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114238791	114238791	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45814933	45814933	+	Missense_Mutation	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1B1	162	broad.mit.edu	37	22	29750962	29750962	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3G	60489	broad.mit.edu	37	22	39479863	39479863	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3G	60489	broad.mit.edu	37	22	39479863	39479863	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF9	23229	broad.mit.edu	37	X	62974284	62974284	+	5'UTR	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF9	23229	broad.mit.edu	37	X	62974284	62974284	+	5'UTR	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAM	79827	broad.mit.edu	37	11	123006938	123006938	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAM	79827	broad.mit.edu	37	11	123006938	123006938	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155327012	155327012	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	26033089	26033089	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31323436	31323436	+	Silent	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31323436	31323436	+	Silent	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2B	54454	broad.mit.edu	37	2	23985107	23985107	+	Silent	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXIN1	8312	broad.mit.edu	37	16	347719	347719	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11047705	11047705	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160304777	160304777	+	Missense_Mutation	SNP	T	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS2	583	broad.mit.edu	37	16	56536674	56536674	+	Missense_Mutation	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2	596	broad.mit.edu	37	18	60985890	60985890	+	Missense_Mutation	SNP	C	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2	596	broad.mit.edu	37	18	60985890	60985890	+	Missense_Mutation	SNP	C	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129154963	129154963	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129154963	129154963	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	96069881	96069881	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	96069881	96069881	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL9	153579	broad.mit.edu	37	5	180486301	180486301	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf137	26098	broad.mit.edu	37	10	127434426	127434426	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf2	738	broad.mit.edu	37	11	64878677	64878677	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf2	738	broad.mit.edu	37	11	64879032	64879032	+	Silent	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf2	738	broad.mit.edu	37	11	64879032	64879032	+	Silent	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf41	84529	broad.mit.edu	37	15	36905791	36905791	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf41	84529	broad.mit.edu	37	15	36905791	36905791	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf12	55184	broad.mit.edu	37	20	18401907	18401908	+	Intron	INS	-	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf42	150297	broad.mit.edu	37	22	32546495	32546495	+	Intron	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf32	51066	broad.mit.edu	37	3	8675651	8675651	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf32	51066	broad.mit.edu	37	3	8675651	8675651	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf39	84892	broad.mit.edu	37	3	43122412	43122412	+	Missense_Mutation	SNP	T	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf45	157777	broad.mit.edu	37	8	67809252	67809252	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf45	157777	broad.mit.edu	37	8	67809252	67809252	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53810712	53810712	+	Missense_Mutation	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53810712	53810712	+	Missense_Mutation	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54919343	54919343	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54919343	54919343	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93073033	93073033	+	Missense_Mutation	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76825355	76825355	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76826513	76826513	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76826613	76826613	+	Nonsense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76826625	76826625	+	Nonsense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76826749	76826749	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76829344	76829344	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76830106	76830106	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76831990	76831990	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76825355	76825355	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76829344	76829344	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76831990	76831990	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110489771	110489771	+	3'UTR	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110489771	110489771	+	3'UTR	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104968228	104968228	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	122003109	122003109	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	122003109	122003109	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLC	23624	broad.mit.edu	37	19	45296727	45296727	+	Intron	SNP	C	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBS	875	broad.mit.edu	37	21	44473883	44473887	+	3'UTR	DEL	GCCAG	-	-	rs71872941		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC21	64793	broad.mit.edu	37	1	26603225	26603225	+	Missense_Mutation	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC21	64793	broad.mit.edu	37	1	26603225	26603225	+	Missense_Mutation	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC27	148870	broad.mit.edu	37	1	3677924	3677924	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC27	148870	broad.mit.edu	37	1	3677924	3677924	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC67	159989	broad.mit.edu	37	11	93170909	93170909	+	3'UTR	SNP	T	C	C	rs149717459	by1000genomes	TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC90B	60492	broad.mit.edu	37	11	82976848	82976848	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC90B	60492	broad.mit.edu	37	11	82976848	82976848	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28605336	28605336	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28605336	28605336	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT2	10576	broad.mit.edu	37	12	69993839	69993839	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT7	10574	broad.mit.edu	37	2	73477352	73477353	+	Intron	INS	-	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60308685	60308685	+	Intron	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDR1	1038	broad.mit.edu	37	X	139865672	139865672	+	3'UTR	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDR1	1038	broad.mit.edu	37	X	139865672	139865672	+	3'UTR	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40054003	40054003	+	Silent	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40054003	40054003	+	Silent	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHEK1	1111	broad.mit.edu	37	11	125503046	125503046	+	Intron	DEL	C	-	-			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHEK1	1111	broad.mit.edu	37	11	125503046	125503046	+	Intron	DEL	C	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST1	8534	broad.mit.edu	37	11	45671907	45671907	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST1	8534	broad.mit.edu	37	11	45671907	45671907	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CITED1	4435	broad.mit.edu	37	X	71522132	71522132	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3085393	3085393	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3085393	3085393	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP1	8506	broad.mit.edu	37	17	40837946	40837946	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP1	8506	broad.mit.edu	37	17	40837946	40837946	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105833976	105833976	+	Silent	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105833976	105833976	+	Silent	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110827061	110827061	+	Silent	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110831887	110831887	+	Intron	SNP	C	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110827061	110827061	+	Silent	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110831887	110831887	+	Intron	SNP	C	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107408255	107408255	+	Silent	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107408255	107408255	+	Silent	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3651804	3651804	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPD	1362	broad.mit.edu	37	17	28782632	28782632	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2975964	2975964	+	Silent	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2975964	2975964	+	Silent	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114388965	114388965	+	Intron	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114388965	114388965	+	Intron	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT47B1	643311	broad.mit.edu	37	X	120008919	120008919	+	Silent	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSL3	392360	broad.mit.edu	37	9	90388511	90388511	+	Missense_Mutation	SNP	C	T	T	rs138191329	byFrequency;by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSL3	392360	broad.mit.edu	37	9	90388511	90388511	+	Missense_Mutation	SNP	C	T	T	rs138191329	byFrequency;by1000genomes	TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL7	9820	broad.mit.edu	37	6	43018627	43018628	+	Intron	INS	-	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf48	54967	broad.mit.edu	37	X	134305157	134305157	+	5'UTR	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf48	54967	broad.mit.edu	37	X	134305157	134305157	+	5'UTR	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYYR1	116159	broad.mit.edu	37	21	27945104	27945104	+	Intron	DEL	C	-	-			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885786	88885786	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885786	88885786	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36521658	36521658	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36521658	36521658	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13714578	13714578	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13886245	13886245	+	Intron	DEL	A	-	-	rs150817911		TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132179873	132179873	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132179873	132179873	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41465695	41465695	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41465695	41465695	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28908187	28908187	+	Silent	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28908187	28908187	+	Silent	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLRB1	83658	broad.mit.edu	37	20	33128489	33128489	+	3'UTR	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLRB1	83658	broad.mit.edu	37	20	33128489	33128489	+	3'UTR	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECHS1	1892	broad.mit.edu	37	10	135183319	135183319	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHA2	286097	broad.mit.edu	37	8	16942725	16942725	+	Intron	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHA2	286097	broad.mit.edu	37	8	16942725	16942725	+	Intron	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHB	151651	broad.mit.edu	37	3	19961381	19961381	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHB	151651	broad.mit.edu	37	3	19961381	19961381	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37252962	37252962	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD4	9583	broad.mit.edu	37	8	23305214	23305214	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD4	9583	broad.mit.edu	37	8	23305214	23305214	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132445158	132445158	+	5'UTR	SNP	G	A	A	rs76455802	byFrequency;by1000genomes	TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15	2060	broad.mit.edu	37	1	51905949	51905950	+	Intron	INS	-	TG	TG	rs149345524	by1000genomes	TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERMAP	114625	broad.mit.edu	37	1	43296552	43296552	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERMAP	114625	broad.mit.edu	37	1	43296552	43296552	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESAM	90952	broad.mit.edu	37	11	124632059	124632059	+	5'UTR	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	592577	592577	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOG	9941	broad.mit.edu	37	3	38565414	38565414	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOG	9941	broad.mit.edu	37	3	38565414	38565414	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6146039	6146039	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6146039	6146039	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154157209	154157209	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FADS3	3995	broad.mit.edu	37	11	61646383	61646383	+	Intron	SNP	C	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62274477	62274477	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM46B	115572	broad.mit.edu	37	1	27338889	27338894	+	Intron	DEL	TCCTCT	-	-			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54805391	54805391	+	Missense_Mutation	SNP	G	T	T	rs146327371		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54805391	54805391	+	Missense_Mutation	SNP	G	T	T	rs146327371		TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83G	644815	broad.mit.edu	37	17	18906919	18906919	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASN	2194	broad.mit.edu	37	17	80037127	80037127	+	Silent	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13649600	13649600	+	Nonsense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO7	25793	broad.mit.edu	37	22	32883844	32883844	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO7	25793	broad.mit.edu	37	22	32883844	32883844	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD1	2245	broad.mit.edu	37	X	54497671	54497671	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD1	2245	broad.mit.edu	37	X	54497671	54497671	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGG	2266	broad.mit.edu	37	4	155530768	155530768	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGG	2266	broad.mit.edu	37	4	155530768	155530768	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	60602921	60602921	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180048486	180048487	+	Intron	DNP	GA	TT	TT			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1	2332	broad.mit.edu	37	X	147014144	147014144	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49196587	49196587	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYN	2534	broad.mit.edu	37	6	112015966	112015966	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYN	2534	broad.mit.edu	37	6	112020635	112020635	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYN	2534	broad.mit.edu	37	6	112015966	112015966	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYN	2534	broad.mit.edu	37	6	112020635	112020635	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26570005	26570005	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26570005	26570005	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31178571	31178571	+	Silent	SNP	G	T	T	rs145356432		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31178571	31178571	+	Silent	SNP	G	T	T	rs145356432		TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALT	2592	broad.mit.edu	37	9	34648858	34648858	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCLC	2729	broad.mit.edu	37	6	53373936	53373936	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCLC	2729	broad.mit.edu	37	6	53373936	53373936	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM2	84340	broad.mit.edu	37	5	74046544	74046544	+	Intron	SNP	T	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM2	84340	broad.mit.edu	37	5	74046544	74046544	+	Intron	SNP	T	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT6D1	360203	broad.mit.edu	37	9	138530933	138530933	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT6D1	360203	broad.mit.edu	37	9	138530933	138530933	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLUD2	2747	broad.mit.edu	37	X	120181507	120181507	+	5'UTR	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLUD2	2747	broad.mit.edu	37	X	120181507	120181507	+	5'UTR	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT2	2806	broad.mit.edu	37	16	58743428	58743428	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPLD1	2822	broad.mit.edu	37	6	24446993	24446993	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89931018	89931018	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89931018	89931018	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD3	65983	broad.mit.edu	37	5	125813267	125813267	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB2	2885	broad.mit.edu	37	17	73328799	73328799	+	Missense_Mutation	SNP	A	C	C	rs150762903		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB2	2885	broad.mit.edu	37	17	73328799	73328799	+	Missense_Mutation	SNP	A	C	C	rs150762903		TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9943796	9943796	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA3	2940	broad.mit.edu	37	6	52762756	52762756	+	Splice_Site	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN3	145864	broad.mit.edu	37	15	89422463	89422463	+	Silent	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48681101	48681101	+	Silent	SNP	A	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFRP2	84717	broad.mit.edu	37	19	4499731	4499731	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236760287	236760287	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93184981	93184981	+	Intron	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1T	3010	broad.mit.edu	37	6	26107644	26107644	+	3'UTR	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1T	3010	broad.mit.edu	37	6	26107644	26107644	+	3'UTR	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DMA	3108	broad.mit.edu	37	6	32917122	32917123	+	Frame_Shift_Ins	INS	-	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPL	3191	broad.mit.edu	37	19	39330766	39330766	+	Silent	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPL	3191	broad.mit.edu	37	19	39330766	39330766	+	Silent	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB1	3211	broad.mit.edu	37	17	46608145	46608146	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB1	3211	broad.mit.edu	37	17	46608145	46608146	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH4	59340	broad.mit.edu	37	18	22040652	22040652	+	5'UTR	DEL	G	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSFX2	100130086	broad.mit.edu	37	X	148690309	148690309	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53652847	53652852	+	Intron	DEL	GCCGGT	-	-	rs11091285	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT81	28981	broad.mit.edu	37	12	110570411	110570411	+	Missense_Mutation	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT81	28981	broad.mit.edu	37	12	110570411	110570411	+	Missense_Mutation	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP7	3490	broad.mit.edu	37	4	57897509	57897509	+	Intron	DEL	A	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133789732	133789732	+	Silent	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29973554	29973554	+	Nonsense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29973554	29973554	+	Nonsense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK1BP1	134728	broad.mit.edu	37	6	79577197	79577197	+	5'UTR	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAE	3682	broad.mit.edu	37	17	3651080	3651080	+	Intron	SNP	C	T	T	rs118115429	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31332841	31332841	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54784148	54784148	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54784148	54784148	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39767277	39767277	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH3	23416	broad.mit.edu	37	12	49935579	49935579	+	Intron	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD2	23510	broad.mit.edu	37	17	73045504	73045504	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10600408	10600408	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0232	9778	broad.mit.edu	37	4	6865249	6865249	+	Missense_Mutation	SNP	C	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0232	9778	broad.mit.edu	37	4	6865249	6865249	+	Missense_Mutation	SNP	C	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0284	283638	broad.mit.edu	37	14	105352885	105352890	+	In_Frame_Del	DEL	GCAGGA	-	-	rs60001925		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK3	354	broad.mit.edu	37	19	51359612	51359612	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK3	354	broad.mit.edu	37	19	51359612	51359612	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA6	23633	broad.mit.edu	37	1	32573666	32573666	+	5'UTR	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA6	23633	broad.mit.edu	37	1	32573666	32573666	+	5'UTR	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398285	+	Missense_Mutation	DNP	CC	AA	AA	rs121913529		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398285	+	Missense_Mutation	DNP	CC	AA	AA	rs121913529		TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-3	81850	broad.mit.edu	37	17	39190779	39190779	+	Missense_Mutation	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-9	386676	broad.mit.edu	37	21	46047658	46047658	+	Silent	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-9	386676	broad.mit.edu	37	21	46047658	46047658	+	Silent	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60897373	60897373	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107569580	107569580	+	Nonsense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1B	55132	broad.mit.edu	37	4	129099558	129099558	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1B	55132	broad.mit.edu	37	4	129099558	129099558	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS	51520	broad.mit.edu	37	5	145544113	145544113	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS	51520	broad.mit.edu	37	5	145544113	145544113	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS2	29956	broad.mit.edu	37	1	150941010	150941010	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS2	29956	broad.mit.edu	37	1	150941010	150941010	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGMN	5641	broad.mit.edu	37	14	93170567	93170567	+	3'UTR	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGMN	5641	broad.mit.edu	37	14	93170567	93170567	+	3'UTR	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55143640	55143640	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55143640	55143640	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55179599	55179599	+	3'UTR	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090777	238090777	+	RNA	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090777	238090777	+	RNA	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45604974	45604974	+	5'Flank	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45604974	45604974	+	5'Flank	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC389458	389458	broad.mit.edu	37	7	5076498	5076498	+	Intron	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC389458	389458	broad.mit.edu	37	7	5076498	5076498	+	Intron	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653786	653786	broad.mit.edu	37	16	22587979	22587979	+	Silent	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653786	653786	broad.mit.edu	37	16	22587979	22587979	+	Silent	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160908505	160908505	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160908505	160908505	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP6	4040	broad.mit.edu	37	12	12288174	12288174	+	Missense_Mutation	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76371718	76371718	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	75070327	75070327	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	75070327	75070327	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEH1	28986	broad.mit.edu	37	X	55479576	55479576	+	3'UTR	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K11	4296	broad.mit.edu	37	11	65375459	65375459	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K11	4296	broad.mit.edu	37	11	65375459	65375459	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4	4134	broad.mit.edu	37	3	47958144	47958144	+	Silent	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4	4134	broad.mit.edu	37	3	47958147	47958147	+	Silent	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKBP1	23005	broad.mit.edu	37	15	42116319	42116319	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKBP1	23005	broad.mit.edu	37	15	42116319	42116319	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME1	4199	broad.mit.edu	37	6	84025069	84025069	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME1	4199	broad.mit.edu	37	6	84025069	84025069	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116421330	116421330	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116421330	116421330	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD11	79157	broad.mit.edu	37	17	74772447	74772447	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR890	100126303	broad.mit.edu	37	X	145078031	145078031	+	5'Flank	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR890	100126303	broad.mit.edu	37	X	145078031	145078031	+	5'Flank	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154858045	154858045	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154858045	154858045	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132641792	132641792	+	Silent	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132641792	132641792	+	Silent	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX4	117196	broad.mit.edu	37	11	18195087	18195087	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS27	23107	broad.mit.edu	37	5	71519475	71519475	+	Intron	SNP	C	T	T	rs74783714	by1000genomes	TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1F	4494	broad.mit.edu	37	16	56692544	56692544	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1F	4494	broad.mit.edu	37	16	56692544	56692544	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100518404	100518404	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100540140	100540140	+	Frame_Shift_Del	DEL	T	-	-			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100518404	100518404	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100540140	100540140	+	Frame_Shift_Del	DEL	T	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100663518	100663518	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100663518	100663518	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100676777	100676777	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC2	4606	broad.mit.edu	37	19	50962129	50962129	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10363424	10363424	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24418874	24418874	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOZ1	58529	broad.mit.edu	37	10	75394577	75394577	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOZ1	58529	broad.mit.edu	37	10	75394577	75394577	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1921002	1921002	+	Silent	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175436231	175436231	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175436231	175436231	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101712232	101712232	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT2	10	broad.mit.edu	37	8	18257858	18257858	+	Silent	SNP	C	T	T	rs45532639	byFrequency	TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16891870	16891870	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170523812	170523812	+	5'UTR	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170523812	170523812	+	5'UTR	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204971720	204971720	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204971720	204971720	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGEF	25791	broad.mit.edu	37	2	233839373	233839373	+	Silent	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGEF	25791	broad.mit.edu	37	2	233839373	233839373	+	Silent	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	37064849	37064849	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139407481	139407481	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139407481	139407481	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	72994591	72994591	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	72994591	72994591	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NQO2	4835	broad.mit.edu	37	6	3010463	3010463	+	Intron	SNP	T	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134070532	134070532	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134070532	134070532	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM1	10439	broad.mit.edu	37	9	137982234	137982235	+	Intron	INS	-	TT	TT	rs149127682	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J1	26476	broad.mit.edu	37	1	159410483	159410483	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J1	26476	broad.mit.edu	37	1	159410483	159410483	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20404500	20404500	+	Silent	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20404500	20404500	+	Silent	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563901	55563901	+	Silent	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563901	55563901	+	Silent	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC2L	4999	broad.mit.edu	37	2	201814323	201814323	+	Silent	SNP	A	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC2L	4999	broad.mit.edu	37	2	201814323	201814323	+	Silent	SNP	A	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26686436	26686436	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE1	8712	broad.mit.edu	37	X	49454055	49454055	+	Silent	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226549183	226549183	+	Missense_Mutation	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226549183	226549183	+	Missense_Mutation	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99663203	99663203	+	Silent	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99663203	99663203	+	Silent	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	31049037	31049037	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53418997	53418997	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53418997	53418997	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140261961	140261961	+	Silent	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140261961	140261961	+	Silent	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117095404	117095404	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117096530	117096530	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117097786	117097786	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117097809	117097809	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117098010	117098010	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117098130	117098130	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117095404	117095404	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117097786	117097786	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117097809	117097809	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117098010	117098010	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117098130	117098130	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31876897	31876897	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31876897	31876897	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95395512	95395512	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95395512	95395512	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE9A	5152	broad.mit.edu	37	21	44189040	44189040	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE9A	5152	broad.mit.edu	37	21	44189040	44189040	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRL	5157	broad.mit.edu	37	8	17500058	17500058	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRL	5157	broad.mit.edu	37	8	17500058	17500058	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39868522	39868522	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39868522	39868522	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239186473	239186473	+	Silent	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239186473	239186473	+	Silent	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFAS	5198	broad.mit.edu	37	17	8167584	8167585	+	Frame_Shift_Ins	INS	-	C	C	rs138697840	byFrequency	TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHOSPHO1	162466	broad.mit.edu	37	17	47303942	47303942	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHOSPHO1	162466	broad.mit.edu	37	17	47303942	47303942	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHRF1	57661	broad.mit.edu	37	11	601720	601720	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIF1	80119	broad.mit.edu	37	15	65110594	65110594	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIF1	80119	broad.mit.edu	37	15	65110626	65110626	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGP	51227	broad.mit.edu	37	21	38445003	38445003	+	5'UTR	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110502261	110502261	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G6	8398	broad.mit.edu	37	22	38511423	38511423	+	Intron	SNP	C	A	A	rs141174626	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9389321	9389321	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18846722	18846722	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18846722	18846722	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131936104	131936104	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L11	441263	broad.mit.edu	37	7	76609937	76609946	+	5'Flank	DEL	GGCACCATGC	-	-	rs2430307	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POC1A	25886	broad.mit.edu	37	3	52181038	52181038	+	Missense_Mutation	SNP	G	A	A	rs147071412	byFrequency	TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84561281	84561284	+	Frame_Shift_Del	DEL	AGAG	-	-			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84561281	84561284	+	Frame_Shift_Del	DEL	AGAG	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24861649	24861649	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24861649	24861649	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133248989	133248989	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133249496	133249496	+	Intron	SNP	A	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133248989	133248989	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38166184	38166184	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA3	8541	broad.mit.edu	37	19	49637427	49637428	+	Intron	INS	-	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1K	152926	broad.mit.edu	37	4	89183600	89183600	+	3'UTR	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1K	152926	broad.mit.edu	37	4	89183867	89183867	+	Nonsense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1K	152926	broad.mit.edu	37	4	89183867	89183867	+	Nonsense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF1	65121	broad.mit.edu	37	1	12855612	12855612	+	Missense_Mutation	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF1	65121	broad.mit.edu	37	1	12855612	12855612	+	Missense_Mutation	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM16	63976	broad.mit.edu	37	1	3342332	3342332	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM16	63976	broad.mit.edu	37	1	3342332	3342332	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKACB	5567	broad.mit.edu	37	1	84663408	84663408	+	Intron	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRNT	149830	broad.mit.edu	37	20	4713162	4713162	+	RNA	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRNT	149830	broad.mit.edu	37	20	4713162	4713162	+	RNA	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRA	5786	broad.mit.edu	37	20	3002719	3002719	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70946696	70946696	+	Missense_Mutation	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXK	54899	broad.mit.edu	37	3	58395792	58395793	+	Intron	INS	-	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9303303	9303303	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9303303	9303303	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178885594	178885594	+	3'UTR	SNP	C	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF2	9693	broad.mit.edu	37	4	160235971	160235971	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF2	9693	broad.mit.edu	37	4	160235971	160235971	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80388726	80388726	+	Silent	SNP	A	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80388726	80388726	+	Silent	SNP	A	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASL11B	65997	broad.mit.edu	37	4	53731759	53731759	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASL11B	65997	broad.mit.edu	37	4	53731759	53731759	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECK	8434	broad.mit.edu	37	9	36112460	36112461	+	Frame_Shift_Ins	INS	-	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELB	5971	broad.mit.edu	37	19	45515272	45515272	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC1	5981	broad.mit.edu	37	4	39306600	39306600	+	Intron	SNP	A	C	C	rs3816773		TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS8	85397	broad.mit.edu	37	1	182617161	182617161	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS8	85397	broad.mit.edu	37	1	182617161	182617161	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77147419	77147419	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77147419	77147419	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS29	6235	broad.mit.edu	37	14	50044477	50044477	+	3'UTR	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS29	6235	broad.mit.edu	37	14	50044477	50044477	+	3'UTR	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA3	6197	broad.mit.edu	37	X	20204549	20204549	+	Intron	DEL	A	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA6	27330	broad.mit.edu	37	X	83372454	83372454	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGC	64121	broad.mit.edu	37	1	39305178	39305178	+	3'UTR	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGC	64121	broad.mit.edu	37	1	39305178	39305178	+	3'UTR	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237819148	237819148	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237819148	237819148	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAG	6295	broad.mit.edu	37	2	234235974	234235974	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAG	6295	broad.mit.edu	37	2	234235974	234235974	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAI	286205	broad.mit.edu	37	9	127818229	127818229	+	Silent	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAI	286205	broad.mit.edu	37	9	127818229	127818229	+	Silent	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62020210	62020210	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN3	79634	broad.mit.edu	37	2	175292419	175292419	+	Intron	SNP	C	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN3	79634	broad.mit.edu	37	2	175292419	175292419	+	Intron	SNP	C	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7318876	7318876	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155935709	155935710	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC2	25759	broad.mit.edu	37	19	430712	430712	+	Silent	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPK	23729	broad.mit.edu	37	17	3514315	3514315	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPK	23729	broad.mit.edu	37	17	3514315	3514315	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPG	55423	broad.mit.edu	37	20	1629958	1629958	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPG	55423	broad.mit.edu	37	20	1629958	1629958	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A8	116369	broad.mit.edu	37	6	35922941	35922941	+	Silent	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A8	116369	broad.mit.edu	37	6	35922941	35922941	+	Silent	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A2	7780	broad.mit.edu	37	1	26372400	26372400	+	5'UTR	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A4	120103	broad.mit.edu	37	11	92918921	92918921	+	Nonsense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A4	120103	broad.mit.edu	37	11	92918921	92918921	+	Nonsense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A10	125206	broad.mit.edu	37	17	18916555	18916555	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A10	125206	broad.mit.edu	37	17	18923431	18923431	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A10	125206	broad.mit.edu	37	17	18923431	18923431	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74911163	74911163	+	Intron	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP47	116841	broad.mit.edu	37	1	227954801	227954801	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP47	116841	broad.mit.edu	37	1	227954801	227954801	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX9	51429	broad.mit.edu	37	6	158294105	158294105	+	Intron	DEL	T	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOAT1	6646	broad.mit.edu	37	1	179320360	179320360	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN5	494197	broad.mit.edu	37	X	52826469	52826469	+	5'Flank	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN5	494197	broad.mit.edu	37	X	52826469	52826469	+	5'Flank	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA6	54558	broad.mit.edu	37	1	48764354	48764354	+	3'UTR	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA6	54558	broad.mit.edu	37	1	48764354	48764354	+	3'UTR	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35759585	35759585	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35759585	35759585	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220350217	220350217	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220350217	220350217	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG11	80208	broad.mit.edu	37	15	44891010	44891010	+	Silent	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG11	80208	broad.mit.edu	37	15	44891010	44891010	+	Silent	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64383808	64383808	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP2	23635	broad.mit.edu	37	5	80762909	80762910	+	Intron	DEL	CC	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7	7982	broad.mit.edu	37	7	116778442	116778442	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STBD1	8987	broad.mit.edu	37	4	77230372	77230372	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STBD1	8987	broad.mit.edu	37	4	77230372	77230372	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1220371	1220371	+	Splice_Site	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT4A1	25830	broad.mit.edu	37	22	44221917	44221917	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT4A1	25830	broad.mit.edu	37	22	44221917	44221917	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMO1	7341	broad.mit.edu	37	2	203084879	203084887	+	Intron	DEL	TTACTCACT	-	-			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMO1	7341	broad.mit.edu	37	2	203084879	203084887	+	Intron	DEL	TTACTCACT	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4	6874	broad.mit.edu	37	20	60551116	60551116	+	3'UTR	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85473649	85473649	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79286667	79286667	+	3'UTR	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65155522	65155522	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65155522	65155522	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	121039100	121039100	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	121039100	121039100	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGS1	96764	broad.mit.edu	37	8	56702682	56702682	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGS1	96764	broad.mit.edu	37	8	56702682	56702682	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKT	7086	broad.mit.edu	37	3	53264635	53264635	+	Frame_Shift_Del	DEL	T	-	-			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKT	7086	broad.mit.edu	37	3	53264635	53264635	+	Frame_Shift_Del	DEL	T	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60637432	60637432	+	Missense_Mutation	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60637432	60637432	+	Missense_Mutation	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF2	7108	broad.mit.edu	37	11	64882511	64882512	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF2	7108	broad.mit.edu	37	11	64882533	64882533	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF2	7108	broad.mit.edu	37	11	64882511	64882512	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF2	7108	broad.mit.edu	37	11	64882533	64882533	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF4	81501	broad.mit.edu	37	8	105360676	105360676	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48700726	48700726	+	Silent	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48700726	48700726	+	Silent	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63A	9725	broad.mit.edu	37	1	226034929	226034929	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63A	9725	broad.mit.edu	37	1	226034929	226034929	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM71	137835	broad.mit.edu	37	8	133734456	133734456	+	Intron	SNP	A	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF13B	10673	broad.mit.edu	37	13	108922448	108922448	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF13B	10673	broad.mit.edu	37	13	108922448	108922448	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS	8658	broad.mit.edu	37	8	9592822	9592822	+	Intron	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS	8658	broad.mit.edu	37	8	9592822	9592822	+	Intron	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175097855	175097855	+	Missense_Mutation	SNP	C	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175097855	175097855	+	Missense_Mutation	SNP	C	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF4	9618	broad.mit.edu	37	17	27076615	27076615	+	3'UTR	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF4	9618	broad.mit.edu	37	17	27076615	27076615	+	3'UTR	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42244104	42244104	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42244104	42244104	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM40	135644	broad.mit.edu	37	6	30113711	30113711	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM40	135644	broad.mit.edu	37	6	30113711	30113711	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248028173	248028173	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV2	51393	broad.mit.edu	37	17	16323375	16323376	+	Intron	INS	-	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3448012	3448012	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA4B	80086	broad.mit.edu	37	2	220134451	220134451	+	Intron	SNP	T	A	A	rs149574650	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA4B	80086	broad.mit.edu	37	2	220134451	220134451	+	Intron	SNP	T	A	A	rs149574650	by1000genomes	TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBG2	27175	broad.mit.edu	37	17	40815074	40815074	+	Intron	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWF2	11344	broad.mit.edu	37	3	52273119	52273119	+	5'UTR	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72178676	72178676	+	Missense_Mutation	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72178676	72178676	+	Missense_Mutation	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B7	7364	broad.mit.edu	37	4	69962330	69962330	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B7	7364	broad.mit.edu	37	4	69962330	69962330	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1	54887	broad.mit.edu	37	6	34802159	34802159	+	Silent	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1	54887	broad.mit.edu	37	6	34802159	34802159	+	Silent	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5B	219699	broad.mit.edu	37	10	73055740	73055740	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5B	219699	broad.mit.edu	37	10	73055740	73055740	+	Intron	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC93A	54346	broad.mit.edu	37	6	167717596	167717596	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC93A	54346	broad.mit.edu	37	6	167717596	167717596	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP54	159195	broad.mit.edu	37	10	75277074	75277074	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14A	10813	broad.mit.edu	37	X	129045156	129045156	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14A	10813	broad.mit.edu	37	X	129045156	129045156	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144872273	144872274	+	Intron	DEL	AC	-	-	rs34628994		TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	145021194	145021196	+	Intron	DEL	TTA	-	-	rs34776387		TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	17619293	17619293	+	IGR	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19027085	19027085	+	IGR	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42383331	42383331	+	IGR	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90017188	90017188	+	IGR	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19727724	19727724	+	IGR	SNP	C	A	A	rs2774447	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	21536048	21536048	+	IGR	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57888962	57888962	+	IGR	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147142	20147143	+	IGR	DNP	CC	AA	AA			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	65733726	65733726	+	IGR	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	15012703	15012703	+	IGR	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46403420	46403420	+	IGR	SNP	G	C	C	rs140152323		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52690088	52690088	+	IGR	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22253346	22253346	+	IGR	SNP	A	G	G	rs145756544		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39502230	39502230	+	IGR	SNP	G	T	T	rs147584696	by1000genomes	TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	12913899	12913899	+	IGR	DEL	C	-	-			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14629983	14629983	+	IGR	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	41324545	41324545	+	IGR	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54220019	54220019	+	IGR	SNP	G	T	T	rs142228877		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	56717254	56717254	+	IGR	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	25451567	25451567	+	IGR	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	21723514	21723514	+	IGR	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25142388	25142388	+	IGR	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91801170	91801170	+	IGR	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95637996	95637997	+	IGR	DNP	GC	TT	TT			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	125509097	125509097	+	IGR	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161043546	161043546	+	IGR	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163413176	163413176	+	IGR	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84760772	84760772	+	IGR	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144707421	144707422	+	IGR	DNP	CC	AA	AA			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63353659	63353659	+	IGR	SNP	C	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70771969	70771969	+	IGR	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	125600618	125600618	+	IGR	SNP	T	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30689139	30689139	+	IGR	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141263136	141263136	+	IGR	SNP	C	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151648615	151648615	+	IGR	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155058650	155058650	+	IGR	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52818554	52818554	+	IGR	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89368706	89368706	+	IGR	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	17619293	17619293	+	IGR	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38930889	38930889	+	IGR	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38979402	38979402	+	IGR	DEL	C	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	134435457	134435457	+	IGR	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90017188	90017188	+	IGR	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19058985	19058985	+	IGR	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	21536048	21536048	+	IGR	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57888962	57888962	+	IGR	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20097697	20097697	+	IGR	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147142	20147143	+	IGR	DNP	CC	AA	AA			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20993551	20993551	+	IGR	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	65733726	65733726	+	IGR	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	85724793	85724793	+	IGR	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34654784	34654784	+	IGR	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52690088	52690088	+	IGR	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	3057669	3057669	+	IGR	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39502230	39502230	+	IGR	SNP	G	T	T	rs147584696	by1000genomes	TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	12913899	12913899	+	IGR	DEL	C	-	-			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14629983	14629983	+	IGR	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	56717254	56717254	+	IGR	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13219442	13219442	+	IGR	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146592633	146592634	+	IGR	INS	-	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187601592	187601592	+	IGR	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	25451567	25451567	+	IGR	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	21723514	21723514	+	IGR	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25142388	25142388	+	IGR	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11154431	11154431	+	IGR	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	30921729	30921729	+	IGR	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	198244438	198244438	+	IGR	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91801170	91801170	+	IGR	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	125509097	125509097	+	IGR	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163413176	163413176	+	IGR	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117115862	117115863	+	IGR	INS	-	T	T	rs142004885	by1000genomes	TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3923360	3923361	+	IGR	INS	-	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	116052076	116052076	+	IGR	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84760772	84760772	+	IGR	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	91140056	91140056	+	IGR	SNP	A	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29297565	29297565	+	IGR	SNP	A	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144707421	144707421	+	IGR	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63353659	63353659	+	IGR	SNP	C	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70771969	70771969	+	IGR	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	125600618	125600618	+	IGR	SNP	T	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30689139	30689139	+	IGR	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151213848	151213848	+	IGR	SNP	A	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151648615	151648615	+	IGR	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155058650	155058650	+	IGR	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45591217	45591217	+	IGR	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89368706	89368706	+	IGR	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79840736	79840736	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79840736	79840736	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12439574	12439574	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR11	55717	broad.mit.edu	37	10	122665342	122665342	+	Intron	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR69	164781	broad.mit.edu	37	2	228750068	228750068	+	Silent	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR69	164781	broad.mit.edu	37	2	228750068	228750068	+	Silent	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31598097	31598097	+	Intron	SNP	C	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC13	389874	broad.mit.edu	37	X	73524453	73524453	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE20	64145	broad.mit.edu	37	3	15118613	15118613	+	Missense_Mutation	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE27	118813	broad.mit.edu	37	10	99502838	99502838	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE27	118813	broad.mit.edu	37	10	99502838	99502838	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF275	10838	broad.mit.edu	37	X	152610347	152610348	+	Intron	INS	-	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72601938	72601938	+	Silent	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF43	7594	broad.mit.edu	37	19	21991282	21991282	+	Silent	SNP	A	G	G			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF43	7594	broad.mit.edu	37	19	21991282	21991282	+	Silent	SNP	A	G	G			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF442	79973	broad.mit.edu	37	19	12474516	12474516	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF442	79973	broad.mit.edu	37	19	12474516	12474516	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935217	30935217	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31038768	31038768	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039011	31039011	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31038768	31038768	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039011	31039011	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF560	147741	broad.mit.edu	37	19	9580434	9580434	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF560	147741	broad.mit.edu	37	19	9580434	9580434	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF829	374899	broad.mit.edu	37	19	37383369	37383369	+	Silent	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF829	374899	broad.mit.edu	37	19	37383369	37383369	+	Silent	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF835	90485	broad.mit.edu	37	19	57175617	57175617	+	Missense_Mutation	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	51816482	51816482	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21731313	21731313	+	Silent	SNP	G	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	151995069	151995069	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224190264	224190264	+	RNA	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	113951437	113951437	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69337096	69337096	+	Intron	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	3354	3354	+	5'Flank	SNP	A	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	5420	5420	+	5'Flank	SNP	T	C	C			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136065540	136065540	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	51816482	51816482	+	Intron	SNP	C	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21731313	21731313	+	Silent	SNP	G	C	C			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	151995069	151995069	+	Intron	SNP	G	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224190264	224190264	+	RNA	SNP	A	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89346079	89346079	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89968488	89968488	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	113951437	113951437	+	Intron	SNP	C	A	A			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136065540	136065540	+	Intron	SNP	G	T	T			TCGA-67-3774-01A-01W-0928-08	TCGA-67-3774-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
