Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2M	2	broad.mit.edu	37	12	9243990	9243990	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9251203	9251203	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AAK1	22848	broad.mit.edu	37	2	69784102	69784102	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASDH	132949	broad.mit.edu	37	4	57215535	57215535	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67210778	67210778	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA11P	79963	broad.mit.edu	37	4	420723	420723	+	Silent	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215812271	215812271	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215846873	215846873	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67012630	67012630	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20762799	20762799	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB8	11194	broad.mit.edu	37	7	150731915	150731915	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC4	10257	broad.mit.edu	37	13	95899972	95899972	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183705647	183705647	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI2	10152	broad.mit.edu	37	2	204259426	204259426	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148622033	148622033	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADM	34	broad.mit.edu	37	1	76190449	76190450	+	5'UTR	DNP	CG	TC	TC			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOXL	55289	broad.mit.edu	37	2	111542184	111542184	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20559544	20559544	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTC1	70	broad.mit.edu	37	15	35086858	35086858	+	Intron	DEL	G	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL6A	86	broad.mit.edu	37	3	179294749	179294749	+	Intron	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236902904	236902904	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM15	8751	broad.mit.edu	37	1	155029330	155029330	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106188680	106188680	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106237092	106237092	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106877580	106877580	+	Intron	DEL	T	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107078545	107078545	+	RNA	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33560990	33560990	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33588801	33588801	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72492163	72492163	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5232579	5232579	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7773220	7773220	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH4	127	broad.mit.edu	37	4	100063931	100063931	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L2	84632	broad.mit.edu	37	10	116058954	116058954	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148060052	148060052	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100627997	100627997	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109663777	109663777	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCYL2	23382	broad.mit.edu	37	7	129066148	129066148	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AICDA	57379	broad.mit.edu	37	12	8756972	8756972	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91603226	91603226	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74283396	74283396	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1	56052	broad.mit.edu	37	16	5127543	5127543	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG8	79053	broad.mit.edu	37	11	77817957	77817957	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK3	57538	broad.mit.edu	37	15	85406317	85406317	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR8	79800	broad.mit.edu	37	2	203836194	203836194	+	Intron	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGEL2	90806	broad.mit.edu	37	1	213174123	213174123	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114153292	114153292	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61830708	61830708	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD1	27063	broad.mit.edu	37	10	92676117	92676117	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36	375248	broad.mit.edu	37	2	97866197	97866197	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD44	91526	broad.mit.edu	37	2	197873878	197873878	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD58	347454	broad.mit.edu	37	X	118893473	118893473	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD7	56311	broad.mit.edu	37	7	117874861	117874861	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD9	122416	broad.mit.edu	37	14	102973214	102973214	+	3'UTR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS4B	257629	broad.mit.edu	37	16	21262294	21262294	+	3'UTR	DEL	G	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22257942	22257942	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32E	81611	broad.mit.edu	37	1	150201429	150201429	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOC2	314	broad.mit.edu	37	17	40996621	40996621	+	5'UTR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1	322	broad.mit.edu	37	11	6422207	6422207	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3B	9582	broad.mit.edu	37	22	39387544	39387544	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3F	200316	broad.mit.edu	37	22	39440105	39440105	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21232872	21232872	+	Nonsense_Mutation	SNP	C	A	A	rs139857448		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP12A	375318	broad.mit.edu	37	2	241631418	241631419	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP3	360	broad.mit.edu	37	9	33443783	33443783	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33395003	33395003	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP3	26286	broad.mit.edu	37	22	43218490	43218490	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFIP2	23647	broad.mit.edu	37	11	6498240	6498240	+	3'UTR	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP11A	9824	broad.mit.edu	37	15	32925163	32925163	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11187744	11187744	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11242518	11242518	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156911687	156911687	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135765052	135765052	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135827284	135827284	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135827428	135827428	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35763343	35763343	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARR3	407	broad.mit.edu	37	X	69496556	69496556	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARR3	407	broad.mit.edu	37	X	69497903	69497903	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131073151	131073151	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB6	140459	broad.mit.edu	37	9	132404236	132404236	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH2L	9070	broad.mit.edu	37	8	37968013	37968013	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197108022	197108022	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197112095	197112095	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTL	431705	broad.mit.edu	37	2	96799187	96799187	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176927511	176927511	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119582987	119582987	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATHL1	80162	broad.mit.edu	37	11	294777	294777	+	3'UTR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138832142	138832142	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193025093	193025093	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B3	492	broad.mit.edu	37	X	152826336	152826336	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6AP1	537	broad.mit.edu	37	X	153664276	153664276	+	3'UTR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0D2	245972	broad.mit.edu	37	8	87126054	87126054	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77284869	77284869	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVIL	10677	broad.mit.edu	37	12	58201181	58201181	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVPR2	554	broad.mit.edu	37	X	153171598	153171598	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GNTL1	146712	broad.mit.edu	37	17	80962871	80962871	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAP1	8314	broad.mit.edu	37	3	52439224	52439224	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAP1	8314	broad.mit.edu	37	3	52442492	52442492	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171536079	171536079	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33185912	33185912	+	Silent	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAP29	55973	broad.mit.edu	37	7	107236320	107236320	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCKDHB	594	broad.mit.edu	37	6	80982857	80982857	+	Silent	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEGAIN	57596	broad.mit.edu	37	14	101010278	101010278	+	Frame_Shift_Del	DEL	G	-	-	rs140676218		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND2	139105	broad.mit.edu	37	X	18230695	18230695	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BHLHB9	80823	broad.mit.edu	37	X	102003951	102003951	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC2	329	broad.mit.edu	37	11	102221497	102221497	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32906375	32906375	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRF1	2972	broad.mit.edu	37	14	105692428	105692429	+	Frame_Shift_Ins	INS	-	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRMS1	25855	broad.mit.edu	37	11	66106350	66106350	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79975054	79975054	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100608449	100608449	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100617922	100617922	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTRC	8945	broad.mit.edu	37	10	103281468	103281468	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUB1B	701	broad.mit.edu	37	15	40462863	40462863	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56383243	56383243	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf12	26148	broad.mit.edu	37	10	98741350	98741350	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf52	91894	broad.mit.edu	37	11	111789750	111789750	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf57	55216	broad.mit.edu	37	11	111951114	111951114	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf84	144097	broad.mit.edu	37	11	63586356	63586356	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf12	196477	broad.mit.edu	37	12	91348421	91348421	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112708247	112708247	+	Silent	SNP	C	A	A	rs141149924	by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf102	55051	broad.mit.edu	37	14	90782973	90782973	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf106	55320	broad.mit.edu	37	14	45716193	45716193	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95921952	95921952	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34648661	34648661	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf56	146705	broad.mit.edu	37	17	79202733	79202733	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf51	352909	broad.mit.edu	37	19	55671280	55671280	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf112	55732	broad.mit.edu	37	1	169816850	169816850	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57233710	57233710	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf226	400793	broad.mit.edu	37	1	162353080	162353080	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf87	127795	broad.mit.edu	37	1	60466896	60466896	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf88	128344	broad.mit.edu	37	1	111891101	111891101	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf86	51057	broad.mit.edu	37	2	63631476	63631476	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf86	51057	broad.mit.edu	37	2	63667040	63667040	+	Intron	DEL	G	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf67	200844	broad.mit.edu	37	3	58855019	58855019	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf13	9315	broad.mit.edu	37	5	111091510	111091510	+	5'UTR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf49	134121	broad.mit.edu	37	5	7835309	7835309	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41160328	41160328	+	Missense_Mutation	SNP	G	T	T	rs146667042		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf105	84830	broad.mit.edu	37	6	11778995	11778995	+	5'UTR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40536033	40536033	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf51	222950	broad.mit.edu	37	7	100087052	100087052	+	Frame_Shift_Del	DEL	G	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69445133	69445134	+	Intron	DEL	GT	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf86	389649	broad.mit.edu	37	8	38374079	38374079	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf86	55684	broad.mit.edu	37	9	139707073	139707073	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48685363	48685363	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40055905	40055905	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18789651	18789651	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG8	59283	broad.mit.edu	37	19	54483032	54483032	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCB	797	broad.mit.edu	37	11	15098690	15098690	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93108688	93108688	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKK1	84254	broad.mit.edu	37	17	3785657	3785657	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7806269	7806269	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CANX	821	broad.mit.edu	37	5	179150103	179150103	+	Intron	DEL	C	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN3	825	broad.mit.edu	37	15	42703268	42703268	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110490481	110490482	+	Intron	DNP	CC	AA	AA			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBARA1	10367	broad.mit.edu	37	10	74128145	74128145	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLL1	79872	broad.mit.edu	37	7	107394313	107394313	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1B	200014	broad.mit.edu	37	1	52826313	52826313	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC76	54482	broad.mit.edu	37	1	100605698	100605698	+	Intron	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158298651	158298651	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99L2	83692	broad.mit.edu	37	X	149963469	149963469	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99L2	83692	broad.mit.edu	37	X	149963874	149963874	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24578542	24578542	+	Intron	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21975206	21975206	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22142627	22142627	+	Intron	DEL	A	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73464797	73464797	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73553131	73553131	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61687553	61687553	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61854977	61854977	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202671362	202671362	+	5'UTR	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK7	1022	broad.mit.edu	37	5	68564998	68564998	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL	9425	broad.mit.edu	37	6	4892131	4892131	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM5	1048	broad.mit.edu	37	19	42213504	42213505	+	Intron	DEL	GG	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104070561	104070561	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFTR	1080	broad.mit.edu	37	7	117267576	117267576	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGA	1081	broad.mit.edu	37	6	87795419	87795419	+	3'UTR	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD1L	9557	broad.mit.edu	37	1	146747204	146747204	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40116400	40116401	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40120549	40120549	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB3	117286	broad.mit.edu	37	19	16275587	16275587	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP	8483	broad.mit.edu	37	15	65499138	65499138	+	Missense_Mutation	SNP	G	A	A	rs142891097	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86898239	86898239	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86919278	86919278	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN6	1185	broad.mit.edu	37	1	11900189	11900189	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC14A	161198	broad.mit.edu	37	14	38724597	38724597	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73770667	73770667	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN6	54982	broad.mit.edu	37	15	68500662	68500662	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPTM1L	81037	broad.mit.edu	37	5	1326088	1326088	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA1	1259	broad.mit.edu	37	4	47939929	47939929	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT10	25904	broad.mit.edu	37	3	32794838	32794838	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT8	9337	broad.mit.edu	37	5	154254903	154254903	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205022456	205022456	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3076339	3076339	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75827262	75827262	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121344837	121344837	+	Intron	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121353608	121353608	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94042429	94042429	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139618608	139618608	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139635992	139635992	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139815035	139815035	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110827079	110827079	+	Silent	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107834721	107834721	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48612517	48612517	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS2	9318	broad.mit.edu	37	15	49431798	49431798	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO2B	10391	broad.mit.edu	37	15	68937779	68937779	+	Intron	DEL	C	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130025219	130025219	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB1	1360	broad.mit.edu	37	3	148545953	148545953	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211539733	211539733	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211541795	211541795	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43911574	43911574	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16952893	16952893	+	RNA	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16953729	16953729	+	5'Flank	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113303803	113303804	+	Nonsense_Mutation	DNP	AA	TT	TT			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113317142	113317142	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113347554	113347554	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113421305	113421305	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113504698	113504699	+	Intron	INS	-	AA	AA			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN2	1447	broad.mit.edu	37	4	70822904	70822904	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1G3	1456	broad.mit.edu	37	5	122908953	122908953	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF2	1478	broad.mit.edu	37	X	100093506	100093506	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCF	10664	broad.mit.edu	37	16	67654413	67654413	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTH	1491	broad.mit.edu	37	1	70890113	70890114	+	Intron	INS	-	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80835155	80835155	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11364947	11364947	+	Silent	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16635174	16635174	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16635339	16635339	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16635352	16635352	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSK	1513	broad.mit.edu	37	1	150776740	150776740	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117400585	117400585	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16948341	16948341	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111655820	111655820	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111744885	111744885	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	36004220	36004220	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf38	159013	broad.mit.edu	37	X	40498351	40498351	+	Silent	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf56	63932	broad.mit.edu	37	X	118675258	118675259	+	Intron	DNP	GG	TT	TT			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYHR1	50626	broad.mit.edu	37	8	145689869	145689869	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11A1	1583	broad.mit.edu	37	15	74654233	74654233	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57537224	57537224	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBN1	1627	broad.mit.edu	37	5	176893887	176893887	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36401830	36401830	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61084007	61084007	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61096852	61096852	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61099118	61099118	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX11	1663	broad.mit.edu	37	12	31240959	31240959	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEAF1	10522	broad.mit.edu	37	11	678763	678763	+	Missense_Mutation	SNP	C	A	A	rs138447102	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB1	1672	broad.mit.edu	37	8	6735418	6735418	+	5'UTR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEGS2	123099	broad.mit.edu	37	14	100615316	100615316	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5A	23258	broad.mit.edu	37	11	9174082	9174082	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137363415	137363415	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS2	10202	broad.mit.edu	37	14	24113619	24113619	+	Missense_Mutation	SNP	C	T	T	rs143433482	by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX57	90957	broad.mit.edu	37	2	39088702	39088702	+	Nonsense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO2	1734	broad.mit.edu	37	14	80669424	80669424	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3L2	129563	broad.mit.edu	37	2	233199125	233199125	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLD	1738	broad.mit.edu	37	7	107543852	107543852	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83691443	83691443	+	Intron	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124344716	124344716	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH6	1768	broad.mit.edu	37	2	85004577	85004577	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38994558	38994558	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132242073	132242073	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY1	23033	broad.mit.edu	37	6	83851931	83851931	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116572641	116572641	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116599678	116599678	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154172096	154172096	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29027857	29027857	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28991430	28991430	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28993427	28993427	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSTYK	25778	broad.mit.edu	37	1	205156672	205156672	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOXA1	90527	broad.mit.edu	37	15	45412254	45412254	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOXA1	90527	broad.mit.edu	37	15	45412272	45412272	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1LI1	51143	broad.mit.edu	37	3	32586469	32586469	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137807115	137807115	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131671761	131671761	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2L	345930	broad.mit.edu	37	6	139167810	139167810	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDAR	10913	broad.mit.edu	37	2	109546711	109546711	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN3	1908	broad.mit.edu	37	20	57899378	57899379	+	Intron	INS	-	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFNB1	1947	broad.mit.edu	37	X	68059566	68059566	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38425153	38425153	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3A	8661	broad.mit.edu	37	10	120801569	120801569	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3I	8668	broad.mit.edu	37	1	32694555	32694555	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21205816	21205816	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	36909839	36909839	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML2	24139	broad.mit.edu	37	19	46119820	46119820	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENGASE	64772	broad.mit.edu	37	17	77082391	77082391	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	43935496	43935496	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132172456	132172456	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	131962629	131962629	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD7	57089	broad.mit.edu	37	10	101460489	101460489	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66286287	66286287	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPO	2056	broad.mit.edu	37	7	100319144	100319144	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220192222	220192222	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L2	64787	broad.mit.edu	37	11	720164	720164	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2IP	55914	broad.mit.edu	37	5	65317139	65317139	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212285357	212285357	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC2	2068	broad.mit.edu	37	19	45856279	45856279	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC3	2071	broad.mit.edu	37	2	128045982	128045982	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216741515	216741515	+	Intron	DEL	C	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128391816	128391816	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	572866	572866	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6	54536	broad.mit.edu	37	10	94594583	94594583	+	Splice_Site	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA2	2139	broad.mit.edu	37	20	45808416	45808416	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZR	7430	broad.mit.edu	37	6	159190558	159190558	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197036432	197036432	+	5'Flank	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154158632	154158632	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM110B	90362	broad.mit.edu	37	8	59059080	59059080	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM118B	79607	broad.mit.edu	37	11	126126820	126126820	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM127B	26071	broad.mit.edu	37	X	134186196	134186196	+	5'UTR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13A	10144	broad.mit.edu	37	4	89709022	89709022	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171A1	221061	broad.mit.edu	37	10	15254805	15254805	+	3'UTR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM199X	139231	broad.mit.edu	37	X	103433153	103433153	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10696587	10696587	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM50A	9130	broad.mit.edu	37	X	153677050	153677050	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177250277	177250277	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65B	9750	broad.mit.edu	37	6	24977090	24977090	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM70A	55026	broad.mit.edu	37	X	119419210	119419210	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM70A	55026	broad.mit.edu	37	X	119427809	119427809	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP2	9855	broad.mit.edu	37	2	242433486	242433487	+	Frame_Shift_Ins	INS	-	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92086457	92086457	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125074284	125074285	+	Intron	DNP	GC	TT	TT			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD4	121512	broad.mit.edu	37	12	32793039	32793039	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14940269	14940269	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR4	2264	broad.mit.edu	37	5	176518924	176518924	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152280188	152280188	+	Frame_Shift_Del	DEL	G	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153595359	153595359	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128492942	128492942	+	Missense_Mutation	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29001274	29001275	+	Intron	INS	-	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29001283	29001283	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN1	342184	broad.mit.edu	37	15	33149412	33149412	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89402666	89402666	+	Silent	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP1	27086	broad.mit.edu	37	3	71090529	71090529	+	Frame_Shift_Del	DEL	T	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114211084	114211084	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTMT	94033	broad.mit.edu	37	5	121187857	121187857	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ2	29960	broad.mit.edu	37	7	2281801	2281801	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUCA2	2519	broad.mit.edu	37	6	143823055	143823055	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT8	2530	broad.mit.edu	37	14	66082844	66082844	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT9	10690	broad.mit.edu	37	6	96651512	96651512	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G2E3	55632	broad.mit.edu	37	14	31074781	31074782	+	Frame_Shift_Ins	INS	-	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46979658	46979658	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151821480	151821480	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAK	2580	broad.mit.edu	37	4	887089	887089	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31181310	31181310	+	Missense_Mutation	SNP	G	T	T	rs142569800	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT7	51809	broad.mit.edu	37	4	174169580	174169580	+	Silent	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173150975	173150975	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GART	2618	broad.mit.edu	37	21	34893159	34893159	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9822936	9822936	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC2	54810	broad.mit.edu	37	1	78578101	78578101	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC3	126326	broad.mit.edu	37	19	3586737	3586737	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLA	2717	broad.mit.edu	37	X	100662855	100662855	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42004566	42004566	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLTSCR2	29997	broad.mit.edu	37	19	48248739	48248739	+	5'Flank	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57415374	57415374	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA4	2803	broad.mit.edu	37	3	37369784	37369784	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167750588	167750588	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132458435	132458435	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92345504	92345504	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR101	83550	broad.mit.edu	37	X	136113845	136113845	+	5'Flank	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135426945	135426945	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR141	353345	broad.mit.edu	37	7	37780619	37780619	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1A	57655	broad.mit.edu	37	19	35506986	35506986	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123396937	123396937	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102074443	102074443	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK5	2901	broad.mit.edu	37	19	42525511	42525511	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM2	2912	broad.mit.edu	37	3	51752135	51752135	+	3'UTR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126086394	126086394	+	Frame_Shift_Del	DEL	G	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRXCR1	389207	broad.mit.edu	37	4	43032600	43032600	+	3'UTR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADHA	3030	broad.mit.edu	37	2	26417910	26417910	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS7	55559	broad.mit.edu	37	X	152735900	152735900	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153216379	153216379	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153217516	153217516	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFRP3	50810	broad.mit.edu	37	15	83807849	83807849	+	3'UTR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDX	139324	broad.mit.edu	37	X	83695583	83695583	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43351088	43351088	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65474875	65474875	+	Splice_Site	DEL	A	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1A	3024	broad.mit.edu	37	6	26020600	26020600	+	5'Flank	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BF	440689	broad.mit.edu	37	1	149400204	149400204	+	5'Flank	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71142369	71142369	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DOA	3111	broad.mit.edu	37	6	32975902	32975902	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGB3	3149	broad.mit.edu	37	X	150154608	150154608	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGB4	127540	broad.mit.edu	37	1	34330145	34330145	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100401839	100401839	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH2	3274	broad.mit.edu	37	5	175111083	175111083	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HR	55806	broad.mit.edu	37	8	21984809	21984809	+	Silent	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135593109	135593109	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2B	3357	broad.mit.edu	37	2	231973147	231973147	+	3'UTR	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70871619	70871619	+	Frame_Shift_Del	DEL	T	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH2	3418	broad.mit.edu	37	15	90631767	90631767	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFFO1	25900	broad.mit.edu	37	12	6660037	6660037	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA10	3446	broad.mit.edu	37	9	21206911	21206911	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47120770	47120770	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118647443	118647443	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130413220	130413220	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130415602	130415602	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130416668	130416668	+	Silent	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL15	3600	broad.mit.edu	37	4	142653880	142653880	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81552230	81552230	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17RD	54756	broad.mit.edu	37	3	57138358	57138358	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1R1	3554	broad.mit.edu	37	2	102789251	102789251	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7	3574	broad.mit.edu	37	8	79674656	79674656	+	Intron	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156813291	156813291	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75954153	75954153	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK1	3654	broad.mit.edu	37	X	153278822	153278822	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISPD	729920	broad.mit.edu	37	7	16341066	16341066	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISYNA1	51477	broad.mit.edu	37	19	18546132	18546132	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITCH	83737	broad.mit.edu	37	20	33065809	33065809	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42457495	42457495	+	Missense_Mutation	SNP	G	A	A	rs143967758	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31368684	31368684	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102105126	102105126	+	5'UTR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITM2C	81618	broad.mit.edu	37	2	231738039	231738039	+	Intron	DEL	G	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK1	23189	broad.mit.edu	37	9	744377	744377	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2B	8850	broad.mit.edu	37	3	20189657	20189657	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA5	3741	broad.mit.edu	37	12	5155014	5155014	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75444827	75444827	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH6	81033	broad.mit.edu	37	17	61613303	61613303	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP2	30819	broad.mit.edu	37	10	103587002	103587002	+	3'UTR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ16	3773	broad.mit.edu	37	17	68128830	68128830	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK3	3777	broad.mit.edu	37	2	26950453	26950453	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78713662	78713662	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154685909	154685909	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM2A	22992	broad.mit.edu	37	11	66975183	66975183	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4D	55693	broad.mit.edu	37	11	94731653	94731653	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10610343	10610343	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS2	202559	broad.mit.edu	37	6	62407302	62407302	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0430	9665	broad.mit.edu	37	16	15725370	15725370	+	Intron	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8784097	8784097	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0947	23379	broad.mit.edu	37	5	5463749	5463749	+	Silent	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118221891	118221891	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118239129	118239129	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57181921	57181921	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1274	27143	broad.mit.edu	37	10	72298677	72298677	+	Silent	SNP	G	T	T	rs145017915		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94067067	94067067	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100133895	100133895	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1614	57710	broad.mit.edu	37	1	180910191	180910191	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39709008	39709008	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF9	64147	broad.mit.edu	37	3	47289107	47289107	+	Intron	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLC1	3831	broad.mit.edu	37	14	104123946	104123946	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF3	51274	broad.mit.edu	37	4	38696289	38696292	+	Intron	DEL	TTGT	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL14	57565	broad.mit.edu	37	18	30275470	30275470	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRF1	51348	broad.mit.edu	37	12	9994722	9994722	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123089595	123089595	+	Missense_Mutation	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA1	3836	broad.mit.edu	37	3	122170440	122170440	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25378562	25378562	+	Missense_Mutation	SNP	C	G	G	rs121913527		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT13	3860	broad.mit.edu	37	17	39661336	39661336	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT1	3848	broad.mit.edu	37	12	53071243	53071243	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT74	121391	broad.mit.edu	37	12	52967082	52967082	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-2	337969	broad.mit.edu	37	21	31859729	31859729	+	5'Flank	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-11	440051	broad.mit.edu	37	11	71293931	71293931	+	5'Flank	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153136159	153136159	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42163093	42163093	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112462407	112462407	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183101835	183101835	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS6	253782	broad.mit.edu	37	2	169547628	169547628	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBP	3929	broad.mit.edu	37	20	36982965	36982965	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB1	8861	broad.mit.edu	37	10	103871402	103871402	+	Intron	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB3	11155	broad.mit.edu	37	10	88446742	88446742	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202284117	202284117	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN9	286826	broad.mit.edu	37	1	226485450	226485450	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPF	8513	broad.mit.edu	37	10	90433627	90433627	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD2	92255	broad.mit.edu	37	5	36105281	36105281	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNB1	4001	broad.mit.edu	37	5	126156598	126156598	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNX2	222484	broad.mit.edu	37	13	28143266	28143267	+	Frame_Shift_Ins	INS	-	GC	GC			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC387646	387646	broad.mit.edu	37	10	27538143	27538143	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440173	440173	broad.mit.edu	37	9	89626736	89626736	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442459	442459	broad.mit.edu	37	X	98975225	98975225	+	RNA	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78211548	78211548	+	Silent	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646813	646813	broad.mit.edu	37	11	50368288	50368288	+	5'Flank	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOX	4015	broad.mit.edu	37	5	121402391	121402391	+	3'UTR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160906749	160906783	+	Intron	DEL	GACAAGTAGAGTCCTGAGCAGTTATCTCAAAGCAG	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99766554	99766554	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99771933	99771933	+	Silent	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151604509	151604509	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40360309	40360309	+	Frame_Shift_Del	DEL	G	-	-	rs147506870	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42373273	42373273	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133881687	133881687	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG1	26018	broad.mit.edu	37	3	66550812	66550812	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141253064	141253064	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	169999058	169999058	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A3	374819	broad.mit.edu	37	17	62855491	62855491	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37B2	147172	broad.mit.edu	37	17	28937815	28937815	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC69	100130742	broad.mit.edu	37	8	92170551	92170551	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40734100	40734100	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	75019619	75019619	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYG2	254773	broad.mit.edu	37	2	99861640	99861640	+	Intron	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235937105	235937105	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA4	4103	broad.mit.edu	37	X	151092809	151092809	+	Missense_Mutation	SNP	G	A	A	rs143158098		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA6	4105	broad.mit.edu	37	X	151869629	151869629	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALL	7851	broad.mit.edu	37	2	110849155	110849155	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71197546	71197546	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7	9053	broad.mit.edu	37	6	136705034	136705034	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH10	162333	broad.mit.edu	37	17	60821816	60821816	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164507069	164507069	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC5R	4161	broad.mit.edu	37	18	13826676	13826676	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L	23263	broad.mit.edu	37	13	113732728	113732728	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138708396	138708396	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN2	255231	broad.mit.edu	37	1	85412596	85412596	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151127162	151127162	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70342572	70342572	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED16	10025	broad.mit.edu	37	19	881704	881704	+	Silent	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED4	29079	broad.mit.edu	37	13	48655939	48655939	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MELK	9833	broad.mit.edu	37	9	36633175	36633175	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEPE	56955	broad.mit.edu	37	4	88767146	88767146	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP1	4236	broad.mit.edu	37	15	44102151	44102151	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD2A	84879	broad.mit.edu	37	1	40431306	40431306	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42058761	42058761	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MINK1	50488	broad.mit.edu	37	17	4796591	4796591	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR520H	574493	broad.mit.edu	37	19	54244734	54244735	+	5'Flank	DNP	GG	TT	TT			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLF2	8079	broad.mit.edu	37	12	6859920	6859920	+	Missense_Mutation	SNP	T	C	C	rs61731916	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLKL	197259	broad.mit.edu	37	16	74719313	74719313	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLXIPL	51085	broad.mit.edu	37	7	73020022	73020022	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154860027	154860027	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMS19	64210	broad.mit.edu	37	10	99258111	99258111	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MN1	4330	broad.mit.edu	37	22	28196355	28196355	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158811866	158811866	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158813622	158813622	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNS1	55329	broad.mit.edu	37	15	56757291	56757291	+	5'UTR	DEL	G	-	-	rs1711486		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOG	4340	broad.mit.edu	37	6	29637848	29637848	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4L1	10933	broad.mit.edu	37	15	79177320	79177320	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154018221	154018221	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC2	9902	broad.mit.edu	37	17	60767343	60767343	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL13	28998	broad.mit.edu	37	8	121457313	121457313	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A3	932	broad.mit.edu	37	11	59828952	59828952	+	Intron	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6A	64231	broad.mit.edu	37	11	59949015	59949015	+	Intron	DEL	C	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH4	4438	broad.mit.edu	37	1	76349325	76349325	+	Silent	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSLN	10232	broad.mit.edu	37	16	814687	814687	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1G	4495	broad.mit.edu	37	16	56701272	56701272	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1	4522	broad.mit.edu	37	14	64879047	64879047	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63574638	63574638	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9076248	9076248	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1016743	1016743	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113459659	113459659	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3242878	3242878	+	Frame_Shift_Del	DEL	G	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBBP1A	10514	broad.mit.edu	37	17	4451462	4451462	+	Missense_Mutation	SNP	G	A	A	rs139169505	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL2	4605	broad.mit.edu	37	20	42338446	42338446	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81101730	81101730	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10439914	10439914	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23863354	23863354	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10305148	10305148	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL3	4634	broad.mit.edu	37	3	46902372	46902372	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123451990	123451991	+	Intron	DEL	GA	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109475528	109475528	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52676246	52676246	+	Intron	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47527658	47527658	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128327344	128327344	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12666290	12666290	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPEPLD	222236	broad.mit.edu	37	7	102769310	102769310	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARS	4677	broad.mit.edu	37	18	55274256	55274256	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15492218	15492218	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBL1	4681	broad.mit.edu	37	1	19923454	19923454	+	5'Flank	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54903478	54903478	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDEL1	81565	broad.mit.edu	37	17	8347562	8347562	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21176970	21176970	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEIL3	55247	broad.mit.edu	37	4	178257373	178257373	+	Silent	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27352561	27352561	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21581884	21581884	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70532270	70532270	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204923916	204923916	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKB2	4791	broad.mit.edu	37	10	104157747	104157747	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBIL2	4796	broad.mit.edu	37	8	145656640	145656640	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHLRC2	374354	broad.mit.edu	37	10	115636690	115636690	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAP	79576	broad.mit.edu	37	X	119072667	119072667	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55447575	55447575	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO3	408050	broad.mit.edu	37	16	16349579	16349579	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP14	8602	broad.mit.edu	37	4	2956197	2956197	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26093726	26093726	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26101545	26101545	+	Intron	SNP	G	T	T	rs28999397		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOV	4856	broad.mit.edu	37	8	120430668	120430668	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155718295	155718295	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPEPL1	79716	broad.mit.edu	37	20	57288444	57288444	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36340263	36340263	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPTX2	4885	broad.mit.edu	37	7	98257786	98257786	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I3	9970	broad.mit.edu	37	1	161202760	161202760	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107984430	107984430	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131781262	131781262	+	5'UTR	SNP	C	A	A	rs112538778		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87635209	87635209	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88524525	88524525	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88669516	88669516	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16885521	16885521	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF2B	728343	broad.mit.edu	37	X	101620781	101620781	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28277090	28277090	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128692825	128692825	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123518550	123518550	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123538980	123538980	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123631016	123631016	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123805609	123805609	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183696202	183696202	+	Silent	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGT	8473	broad.mit.edu	37	X	70774243	70774243	+	Intron	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN1LW	5956	broad.mit.edu	37	X	153418616	153418616	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN1LW	5956	broad.mit.edu	37	X	153421721	153421721	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13H1	347468	broad.mit.edu	37	X	130678554	130678554	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S1	219959	broad.mit.edu	37	11	57982931	57982931	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AK2	391191	broad.mit.edu	37	1	248129593	248129593	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248367177	248367177	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR3A2	4995	broad.mit.edu	37	17	3181334	3181334	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A5	81318	broad.mit.edu	37	11	51412242	51412242	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55339545	55339546	+	5'Flank	INS	-	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515941	51515941	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5K1	26339	broad.mit.edu	37	3	98188519	98188519	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L1	219437	broad.mit.edu	37	11	55579099	55579099	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26705389	26705389	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANK4	55229	broad.mit.edu	37	1	2452903	2452903	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPSS1	9061	broad.mit.edu	37	4	108566169	108566169	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25449568	25449568	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX4	5078	broad.mit.edu	37	7	127252046	127252046	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX1	5087	broad.mit.edu	37	1	164815781	164815781	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91133670	91133670	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91134128	91134129	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	30723098	30723098	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140589131	140589131	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF5	84333	broad.mit.edu	37	10	93001426	93001427	+	Intron	INS	-	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK6	5046	broad.mit.edu	37	15	101924507	101924507	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD6IP	10015	broad.mit.edu	37	3	33863558	33863558	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCL3	79031	broad.mit.edu	37	2	101182955	101182955	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66798085	66798085	+	Intron	DEL	G	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55141239	55141239	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM5	10611	broad.mit.edu	37	4	95507529	95507529	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PET112L	5188	broad.mit.edu	37	4	152682229	152682229	+	5'Flank	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB1	5207	broad.mit.edu	37	X	54960446	54960446	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM3	5238	broad.mit.edu	37	6	83898345	83898345	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58318346	58318346	+	Intron	DEL	G	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF17	79960	broad.mit.edu	37	4	129752875	129752875	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF19	26147	broad.mit.edu	37	9	123624696	123624696	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20	51230	broad.mit.edu	37	20	34487409	34487409	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21A	51317	broad.mit.edu	37	11	45959700	45959700	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF8	23133	broad.mit.edu	37	X	53965686	53965686	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71876217	71876217	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47722853	47722853	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB2	90102	broad.mit.edu	37	3	111632707	111632707	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIM2	11040	broad.mit.edu	37	X	48771797	48771797	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNM3	83394	broad.mit.edu	37	17	6386989	6386989	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130827667	130827667	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47869272	47869272	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47927830	47927830	+	Intron	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110401229	110401229	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51613441	51613441	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN1	5585	broad.mit.edu	37	19	14581142	14581142	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP1	5317	broad.mit.edu	37	1	201291062	201291062	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2E	30814	broad.mit.edu	37	1	20249235	20249235	+	Silent	SNP	G	T	T	rs146848577	byFrequency	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8698258	8698258	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9365072	9365072	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHO1	51177	broad.mit.edu	37	1	150131409	150131409	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLS3	5358	broad.mit.edu	37	X	114864414	114864414	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208390425	208390425	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA3	55558	broad.mit.edu	37	X	153696086	153696086	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB3	5365	broad.mit.edu	37	X	153032306	153032306	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB3	5365	broad.mit.edu	37	X	153039400	153039400	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA1	285848	broad.mit.edu	37	6	36260888	36260888	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84562228	84562228	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79784817	79784817	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMT1	10585	broad.mit.edu	37	9	134381680	134381680	+	Intron	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARA	5465	broad.mit.edu	37	22	46611143	46611143	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76806097	76806097	+	Intron	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203012563	203012563	+	Silent	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL5	122769	broad.mit.edu	37	14	50074328	50074328	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF11	440560	broad.mit.edu	37	1	12884594	12884594	+	3'UTR	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF11	440560	broad.mit.edu	37	1	12884601	12884601	+	3'UTR	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM4	11108	broad.mit.edu	37	12	108147700	108147700	+	Splice_Site	DEL	C	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDX3	10935	broad.mit.edu	37	10	120932011	120932011	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREPL	9581	broad.mit.edu	37	2	44565504	44565504	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIMA1	145270	broad.mit.edu	37	14	94245748	94245748	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53814147	53814147	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPS1	5631	broad.mit.edu	37	X	106882522	106882522	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRX1	5396	broad.mit.edu	37	1	170699423	170699423	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS12	8492	broad.mit.edu	37	4	119229818	119229818	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43373202	43373202	+	Intron	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43376282	43376282	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43674209	43674209	+	3'UTR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43520013	43520013	+	Intron	DEL	G	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43757688	43757688	+	3'UTR	DEL	T	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH1	5681	broad.mit.edu	37	16	67961404	67961405	+	Frame_Shift_Ins	INS	-	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME2	5721	broad.mit.edu	37	14	24615525	24615525	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSTPIP2	9050	broad.mit.edu	37	18	43591063	43591063	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP1	5725	broad.mit.edu	37	19	804728	804728	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP2	58155	broad.mit.edu	37	1	97278974	97278974	+	3'UTR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71318405	71318405	+	3'UTR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN5	84867	broad.mit.edu	37	11	18763817	18763817	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15699783	15699783	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40748749	40748749	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40864946	40864946	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM2	23369	broad.mit.edu	37	2	20482678	20482678	+	Intron	DEL	A	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52252091	52252091	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158913669	158913669	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9317928	9317928	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAMP1	10267	broad.mit.edu	37	2	238820227	238820227	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109351905	109351906	+	Intron	DNP	GG	TT	TT			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF5	9771	broad.mit.edu	37	7	22196399	22196399	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	130766776	130766776	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARS2	57038	broad.mit.edu	37	6	88272379	88272379	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA4	10156	broad.mit.edu	37	7	102236538	102236538	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1CC1	9821	broad.mit.edu	37	8	53569771	53569771	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBL2	5934	broad.mit.edu	37	16	53503961	53503961	+	Silent	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM41	55285	broad.mit.edu	37	X	106362203	106362203	+	5'Flank	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCCD1	91433	broad.mit.edu	37	15	91503244	91503244	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REEP3	221035	broad.mit.edu	37	10	65357914	65357914	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79314758	79314758	+	5'UTR	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43606770	43606770	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV1	51455	broad.mit.edu	37	2	100019322	100019322	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV3L	5980	broad.mit.edu	37	6	111751796	111751796	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC2	5982	broad.mit.edu	37	7	73668671	73668671	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFPL2	10739	broad.mit.edu	37	22	32586720	32586720	+	3'UTR	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL1	23179	broad.mit.edu	37	1	183891506	183891506	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS18	64407	broad.mit.edu	37	1	192127897	192127897	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS5	8490	broad.mit.edu	37	1	163138004	163138004	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOJ	57381	broad.mit.edu	37	14	63747808	63747808	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOQ	23433	broad.mit.edu	37	2	46808292	46808292	+	3'UTR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHPN1	114822	broad.mit.edu	37	8	144459534	144459534	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICH2	9912	broad.mit.edu	37	17	12876534	12876534	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	38975680	38975680	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87345620	87345620	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31521114	31521114	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RND3	390	broad.mit.edu	37	2	151326622	151326622	+	Missense_Mutation	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF13	11342	broad.mit.edu	37	3	149678821	149678821	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF150	57484	broad.mit.edu	37	4	141889013	141889013	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF40	9810	broad.mit.edu	37	16	30777389	30777389	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124757235	124757235	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94485906	94485906	+	3'UTR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS16	6217	broad.mit.edu	37	19	39926172	39926172	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	166912249	166912249	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP12	23223	broad.mit.edu	37	10	99131972	99131972	+	Intron	SNP	C	A	A	rs139233987	by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY2	55680	broad.mit.edu	37	10	70154113	70154113	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUSC1	23623	broad.mit.edu	37	1	155297923	155297923	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159572982	159572982	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165398198	165398198	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237604627	237604627	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237664018	237664018	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237865243	237865243	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237870570	237870570	+	Splice_Site	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33603217	33603217	+	Translation_Start_Site	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33603235	33603235	+	5'UTR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33765573	33765573	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34103250	34103250	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92763391	92763391	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP30BP	29115	broad.mit.edu	37	17	73695961	73695961	+	Intron	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200246416	200246416	+	Splice_Site	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAF1	58506	broad.mit.edu	37	19	50148669	50148669	+	Splice_Site	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD2	152579	broad.mit.edu	37	4	54232021	54232021	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38912393	38912393	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52200403	52200403	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50307383	50307383	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4167083	4167083	+	Silent	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84710911	84710911	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4C	54910	broad.mit.edu	37	2	97527635	97527635	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48063496	48063497	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMG2	6407	broad.mit.edu	37	20	43835802	43835802	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERAC1	84947	broad.mit.edu	37	6	158551401	158551401	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA11	256394	broad.mit.edu	37	14	94914915	94914915	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA5	5104	broad.mit.edu	37	14	95058670	95058670	+	3'UTR	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE2	5270	broad.mit.edu	37	2	224866331	224866331	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26746977	26746977	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7214464	7214464	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPB	6439	broad.mit.edu	37	2	85894218	85894218	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155935753	155935753	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL3	6457	broad.mit.edu	37	15	84286759	84286759	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHFM1	7979	broad.mit.edu	37	7	96339117	96339117	+	5'UTR	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX2	6474	broad.mit.edu	37	3	157818062	157818062	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM3	57619	broad.mit.edu	37	4	77675915	77675915	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC10	89790	broad.mit.edu	37	19	51918829	51918829	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164709072	164709072	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164777168	164777168	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIL	6498	broad.mit.edu	37	3	170108088	170108088	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56906176	56906176	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A9	114571	broad.mit.edu	37	11	63177395	63177395	+	3'UTR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95751121	95751121	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A11	284129	broad.mit.edu	37	17	78219001	78219001	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A2	9153	broad.mit.edu	37	15	45557792	45557792	+	Silent	SNP	C	T	T	rs114596394	byFrequency;by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A10	55532	broad.mit.edu	37	1	220088835	220088835	+	Nonsense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32417450	32417450	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35D2	11046	broad.mit.edu	37	9	99083416	99083416	+	3'UTR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35E3	55508	broad.mit.edu	37	12	69158527	69158527	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F4	341880	broad.mit.edu	37	14	58060834	58060835	+	In_Frame_Ins	INS	-	GGA	GGA			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC37A2	219855	broad.mit.edu	37	11	124946670	124946670	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A10	124565	broad.mit.edu	37	17	79257314	79257314	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A11	151258	broad.mit.edu	37	2	165796039	165796039	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42336630	42336630	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A7	60482	broad.mit.edu	37	2	108618620	108618620	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A14	11254	broad.mit.edu	37	X	115588726	115588726	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110740251	110740251	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAP2	64744	broad.mit.edu	37	1	40875515	40875515	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25339304	25339304	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51363265	51363265	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1271111	1271111	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX31	169166	broad.mit.edu	37	8	101629909	101629909	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106916929	106916929	+	Nonsense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106924210	106924210	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121340896	121340896	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORT1	6272	broad.mit.edu	37	1	109878787	109878787	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214878632	214878632	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXC	64663	broad.mit.edu	37	X	140336685	140336686	+	5'Flank	DNP	CC	AA	AA			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXC	64663	broad.mit.edu	37	X	140358264	140358264	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN1	494118	broad.mit.edu	37	X	144329227	144329227	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN4	441525	broad.mit.edu	37	X	142121947	142121947	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA20	64847	broad.mit.edu	37	17	48628452	48628452	+	Missense_Mutation	SNP	G	T	T	rs146367642	by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35795729	35795729	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINLW1	57119	broad.mit.edu	37	20	44166525	44166525	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINT4	391253	broad.mit.edu	37	20	44351210	44351210	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK3	26576	broad.mit.edu	37	X	153047319	153047319	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX2	27286	broad.mit.edu	37	X	99920543	99920543	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149489534	149489534	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSR4	6748	broad.mit.edu	37	X	153063471	153063471	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA5	29906	broad.mit.edu	37	18	44260213	44260213	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52543153	52543153	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99802368	99802368	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD13	90627	broad.mit.edu	37	13	33687163	33687163	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67938321	67938321	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67938390	67938390	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAU1	6780	broad.mit.edu	37	20	47767976	47767976	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1221228	1221228	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32A	202374	broad.mit.edu	37	5	146750236	146750236	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUCLG1	8802	broad.mit.edu	37	2	84668395	84668395	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C4	27233	broad.mit.edu	37	2	108998756	108998756	+	Intron	DEL	T	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF2	25870	broad.mit.edu	37	7	56140737	56140737	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN1	23353	broad.mit.edu	37	7	901072	901072	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN2	25777	broad.mit.edu	37	22	39136041	39136041	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149883286	149883286	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29821031	29821031	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ2BP	55333	broad.mit.edu	37	14	70842255	70842255	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYPL2	284612	broad.mit.edu	37	1	110020639	110020639	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL4	94121	broad.mit.edu	37	X	99941666	99941666	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL4	94121	broad.mit.edu	37	X	99956257	99956257	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR1	134864	broad.mit.edu	37	6	132966892	132966892	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR5	9038	broad.mit.edu	37	6	132910781	132910781	+	Silent	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF7L	54457	broad.mit.edu	37	X	100531745	100531745	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARBP1	6894	broad.mit.edu	37	1	234565708	234565708	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R2	80834	broad.mit.edu	37	1	19184031	19184031	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D10C	374403	broad.mit.edu	37	11	67173330	67173330	+	Intron	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D25	4943	broad.mit.edu	37	X	48399786	48399786	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBKBP1	9755	broad.mit.edu	37	17	45788015	45788015	+	3'UTR	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL3	85012	broad.mit.edu	37	X	102864703	102864703	+	3'UTR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF23	150921	broad.mit.edu	37	2	27375604	27375604	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCIRG1	10312	broad.mit.edu	37	11	67818087	67818087	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX13A	56157	broad.mit.edu	37	X	104463939	104463939	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133984064	133984064	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS4	7060	broad.mit.edu	37	5	79355630	79355630	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128134688	128134688	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122745444	122745444	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122765637	122765637	+	Nonsense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOP1	7064	broad.mit.edu	37	19	2785690	2785690	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRA	7067	broad.mit.edu	37	17	38245466	38245466	+	Silent	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11446939	11446939	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THY1	7070	broad.mit.edu	37	11	119290115	119290115	+	3'UTR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156353204	156353204	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153524396	153524396	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153524473	153524473	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60601556	60601556	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98192886	98192886	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM106B	54664	broad.mit.edu	37	7	12263849	12263849	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM176A	55365	broad.mit.edu	37	7	150498674	150498674	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM17	200728	broad.mit.edu	37	2	62729958	62729958	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68930431	68930431	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS3	64699	broad.mit.edu	37	21	43808470	43808470	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS5	80975	broad.mit.edu	37	11	113567948	113567948	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29920851	29920851	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117800392	117800392	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP8L3	388121	broad.mit.edu	37	15	51397544	51397544	+	5'Flank	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIP1	10318	broad.mit.edu	37	5	150444787	150444787	+	Intron	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNMD	64102	broad.mit.edu	37	X	99849085	99849085	+	Intron	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOMM40	10452	broad.mit.edu	37	19	45395768	45395768	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2A	7153	broad.mit.edu	37	17	38552628	38552628	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577610	7577610	+	Splice_Site	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113698115	113698120	+	Intron	DEL	GTGTCT	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPSB2	64499	broad.mit.edu	37	16	1278756	1278756	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10908760	10908760	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10919995	10919995	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10942695	10942695	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10951294	10951295	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIB2	28951	broad.mit.edu	37	2	12880878	12880878	+	Silent	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248039120	248039120	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM65	201292	broad.mit.edu	37	17	73887249	73887249	+	Missense_Mutation	SNP	G	A	A	rs150794170		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT2B	79979	broad.mit.edu	37	X	100296848	100296848	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38357161	38357161	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111090456	111090456	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81449856	81449856	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSR2	90121	broad.mit.edu	37	X	54467057	54467057	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179477787	179477787	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179584914	179584914	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22873413	22873413	+	3'UTR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158914673	158914673	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNRD2	10587	broad.mit.edu	37	22	19886634	19886634	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404293	34404293	+	RNA	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	157046907	157046907	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4A	9354	broad.mit.edu	37	11	118244006	118244006	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42571302	42571302	+	Intron	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF2	115426	broad.mit.edu	37	9	6506175	6506175	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54528769	54528769	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13D	201294	broad.mit.edu	37	17	73837068	73837071	+	Frame_Shift_Del	DEL	ATGT	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45A	55898	broad.mit.edu	37	15	91485504	91485504	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33507865	33507865	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCC	55245	broad.mit.edu	37	20	33891883	33891883	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215955619	215955619	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216143891	216143891	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216380497	216380497	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP35	57558	broad.mit.edu	37	11	77921420	77921420	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USPL1	10208	broad.mit.edu	37	13	31221210	31221210	+	Intron	SNP	C	T	T	rs77456109	by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP6	55813	broad.mit.edu	37	17	30192423	30192423	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	101903375	101903375	+	IGR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	69510615	69510615	+	IGR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	69553785	69553785	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	72672589	72672589	+	IGR	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	96406127	96406127	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	98510311	98510311	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	101079906	101079906	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124120415	124120415	+	IGR	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18909309	18909309	+	IGR	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59259532	59259532	+	IGR	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89804402	89804402	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	9370657	9370657	+	IGR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97157995	97157995	+	IGR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19240714	19240714	+	IGR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65532713	65532713	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	84481757	84481757	+	IGR	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20085149	20085149	+	IGR	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137149	20137149	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45329822	45329822	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45972054	45972054	+	IGR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	77102047	77102047	+	IGR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102322521	102322521	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22691649	22691649	+	IGR	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22780972	22780972	+	IGR	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	43489416	43489416	+	IGR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	70095914	70095914	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32823629	32823629	+	IGR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51680430	51680430	+	IGR	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	81737	81737	+	IGR	DEL	G	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	84954355	84954355	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52030689	52030689	+	IGR	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106434733	106434734	+	IGR	DNP	AC	TT	TT			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	117257213	117257213	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146584188	146584188	+	IGR	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903604	148903604	+	IGR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	160640658	160640658	+	IGR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	211833937	211833937	+	IGR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	226626468	226626468	+	IGR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249069244	249069244	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96913147	96913147	+	IGR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	47094192	47094192	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10614640	10614640	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	37388978	37388978	+	IGR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349504	16349504	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	23664794	23664794	+	IGR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162362130	162362130	+	IGR	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168570893	168570893	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	174203247	174203247	+	IGR	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177491678	177491678	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194141672	194141672	+	IGR	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	222809205	222809206	+	IGR	DNP	CC	AA	AA			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800827	91800827	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	122037171	122037171	+	IGR	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	138800682	138800682	+	IGR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36674994	36674994	+	IGR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36810105	36810105	+	IGR	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	40628598	40628598	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	54082355	54082355	+	IGR	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109336387	109336387	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28825566	28825566	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	66960095	66960095	+	IGR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70108751	70108751	+	IGR	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9707552	9707552	+	IGR	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15451987	15451987	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165456097	165456097	+	IGR	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165456099	165456099	+	IGR	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104466711	104466711	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	109765163	109765163	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	145812105	145812105	+	IGR	SNP	T	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48669356	48669356	+	IGR	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	118590965	118590965	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	22896370	22896370	+	IGR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53256362	53256362	+	IGR	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55800028	55800028	+	IGR	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63019530	63019530	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63020569	63020569	+	IGR	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63355027	63355027	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	107228092	107228092	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	125933441	125933441	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	128099521	128099521	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	54625429	54625429	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67334109	67334109	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100852460	100852460	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106797599	106797599	+	IGR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	133300723	133300723	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136523386	136523386	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	138529227	138529227	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144712657	144712657	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144713215	144713215	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145701243	145701243	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146280428	146280428	+	IGR	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	149399454	149399454	+	IGR	DEL	T	-	-			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150394815	150394816	+	IGR	DNP	GG	AT	AT			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	152870526	152870526	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155215219	155215219	+	IGR	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25212521	25212521	+	IGR	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	27535834	27535834	+	IGR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	34165432	34165432	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	58011771	58011771	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64576833	64576833	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72989303	72989303	+	IGR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92748855	92748855	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	10029153	10029153	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59001635	59001635	+	IGR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VBP1	7411	broad.mit.edu	37	X	154467159	154467159	+	3'UTR	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL1	51442	broad.mit.edu	37	X	135618294	135618294	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100515037	100515037	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62167002	62167002	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA2	340706	broad.mit.edu	37	10	116038542	116038542	+	Silent	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3A	146177	broad.mit.edu	37	16	22160991	22160991	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61036367	61036367	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61042021	61042021	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR19	57728	broad.mit.edu	37	4	39271647	39271647	+	Missense_Mutation	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR44	54521	broad.mit.edu	37	X	117576743	117576743	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167293709	167293710	+	In_Frame_Ins	INS	-	TTCAAGATA	TTCAAGATA			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	53992225	53992225	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR92	116143	broad.mit.edu	37	2	68371994	68371994	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1	7468	broad.mit.edu	37	4	1957494	1957494	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK2	65268	broad.mit.edu	37	9	96062229	96062229	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK3	65267	broad.mit.edu	37	X	54280510	54280510	+	Splice_Site	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT7A	7476	broad.mit.edu	37	3	13896333	13896333	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	5993695	5993695	+	Silent	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168098402	168098402	+	Silent	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP1	7511	broad.mit.edu	37	10	111637936	111637936	+	Intron	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO7	23039	broad.mit.edu	37	8	21840351	21840351	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17202974	17202974	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF1	54432	broad.mit.edu	37	1	54331952	54331952	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF6	286451	broad.mit.edu	37	X	67733217	67733217	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF7	285525	broad.mit.edu	37	4	44626656	44626656	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDF3	253943	broad.mit.edu	37	8	64098921	64098921	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB33	10009	broad.mit.edu	37	X	119388004	119388004	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC7	84186	broad.mit.edu	37	9	37126466	37126466	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72008596	72008596	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77620022	77620022	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM2	7750	broad.mit.edu	37	13	20605471	20605471	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF192	7745	broad.mit.edu	37	6	28116494	28116494	+	Silent	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF264	9422	broad.mit.edu	37	19	57723654	57723654	+	Nonsense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF300	91975	broad.mit.edu	37	5	150276176	150276176	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF330	27309	broad.mit.edu	37	4	142148040	142148040	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF398	57541	broad.mit.edu	37	7	148851053	148851053	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF438	220929	broad.mit.edu	37	10	31137436	31137436	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF470	388566	broad.mit.edu	37	19	57081616	57081616	+	Intron	SNP	A	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22846654	22846654	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF582	147948	broad.mit.edu	37	19	56895924	56895924	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF587	84914	broad.mit.edu	37	19	58350457	58350457	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF587	84914	broad.mit.edu	37	19	58371214	58371214	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF711	7552	broad.mit.edu	37	X	84502438	84502438	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF761	388561	broad.mit.edu	37	19	53950358	53950358	+	Intron	SNP	C	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185802439	185802439	+	Silent	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88966215	88966215	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57768208	57768208	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF862	643641	broad.mit.edu	37	7	149559129	149559129	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZXDA	7789	broad.mit.edu	37	X	57934538	57934538	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30982484	30982484	+	Intron	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30988967	30988968	+	Intron	DNP	TG	GC	GC			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42965716	42965716	+	RNA	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55063102	55063102	+	RNA	SNP	T	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55063104	55063104	+	RNA	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22592100	22592100	+	Intron	SNP	A	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22670848	22670848	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32063334	32063334	+	5'Flank	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25746877	25746877	+	RNA	SNP	G	T	T	rs147759843	by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23405524	23405524	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148890306	148890306	+	Intron	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28792887	28792887	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133075743	133075743	+	Intron	SNP	A	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89442676	89442677	+	Intron	DNP	GG	TT	TT			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89544266	89544266	+	RNA	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89890411	89890411	+	5'Flank	SNP	C	T	T	rs147406947	by1000genomes	TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91678944	91678944	+	5'Flank	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	126915771	126915771	+	Silent	SNP	G	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9240998	9240998	+	5'UTR	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142013670	142013670	+	Intron	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143510177	143510177	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122696269	122696269	+	5'Flank	SNP	C	A	A			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136066982	136066982	+	Intron	SNP	G	T	T			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
