Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCG4	0	genome.wustl.edu	37	11	119028976	119028976	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	11	119028976	119028976	C	T	SNP	ABCG4	NM_001142505.1	human	genbank	58_37c	+1	reviewed	silent	c.1101	p.A367	1.000	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,HMMPfam_ABC2_membrane,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ALDH18A1	0	genome.wustl.edu	37	10	97371060	97371060	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	10	97371060	97371060	A	G	SNP	ALDH18A1	NM_002860.3	human	genbank	58_37c	-1	reviewed	missense	c.2063	p.I688T	1.000	superfamily_ALDH-like,PatternScan_PROA	HMMPfam_AA_kinase,superfamily_Carbamate kinase-like,superfamily_ALDH-like,PatternScan_GLUTAMATE_5_KINASE,PatternScan_PROA	-	no_errors
ALG13	0	genome.wustl.edu	37	X	110970225	110970225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	X	110970225	110970225	G	A	SNP	ALG13	ENST00000394780	human	ensembl	58_37c	+1	known	missense	c.1918	p.E640K	0.999	NULL	HMMPfam_OTU,HMMPfam_Glyco_tran_28_C,superfamily_SSF53756,superfamily_SSF54001,superfamily_SSF63748	-	no_errors
ARID1A	0	genome.wustl.edu	37	1	27106816	27106816	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	27106816	27106816	C	T	SNP	ARID1A	NM_006015.4	human	genbank	58_37c	+1	reviewed	missense	c.6427	p.R2143C	1.000	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	-	no_errors
ASPM	0	genome.wustl.edu	37	1	197056085	197056085	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	197056085	197056085	G	-	DEL	ASPM	NM_018136.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.10179	p.V3395fs	0.998	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BATF2	0	genome.wustl.edu	37	11	64756807	64756807	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	11	64756807	64756807	G	A	SNP	BATF2	NM_138456.3	human	genbank	58_37c	-1	validated	nonsense	c.619	p.Q207*	0.602	NULL	HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1	-	no_errors
BSG	0	genome.wustl.edu	37	19	580426	580426	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	19	580426	580426	C	T	SNP	BSG	NM_001728.2	human	genbank	58_37c	+1	reviewed	missense	c.620	p.P207L	0.164	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
C10orf96	0	genome.wustl.edu	37	10	118101618	118101618	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	10	118101618	118101618	A	-	DEL	C10orf96	NM_198515.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.353	p.D118fs	0.998	NULL	NULL	-	no_errors
C6orf167	0	genome.wustl.edu	37	6	97634387	97634387	+	Missense_Mutation	SNP	G	G	A	rs148291789	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	6	97634387	97634387	G	A	SNP	C6orf167	NM_198468.2	human	genbank	58_37c	-1	predicted	missense	c.2219	p.A740V	1.000	NULL	NULL	-	no_errors
COPS7B	0	genome.wustl.edu	37	2	232653392	232653392	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	2	232653392	232653392	C	T	SNP	COPS7B	NM_022730.1	human	genbank	58_37c	+1	provisional	missense	c.112	p.P38S	1.000	NULL	HMMPfam_PCI,HMMSmart_SM00088	-	no_errors
CROCC	0	genome.wustl.edu	37	1	17275337	17275337	+	Missense_Mutation	SNP	C	C	T	rs143866013	byFrequency	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	17275337	17275337	C	T	SNP	CROCC	NM_014675.3	human	genbank	58_37c	+1	validated	missense	c.2752	p.R918W	1.000	NULL	superfamily_Prefoldin	-	no_errors
CTSA	0	genome.wustl.edu	37	20	44520238	44520240	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	20	44520238	44520240	CTG	-	DEL	CTSA	NM_000308.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.85_87	p.L32in_frame_del	0.155:0.311:0.361	NULL	HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER,PatternScan_CARBOXYPEPT_SER_HIS,superfamily_alpha/beta-Hydrolases	-	no_errors
CYFIP1	0	genome.wustl.edu	37	15	22947066	22947066	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	15	22947066	22947066	G	A	SNP	CYFIP1	NM_014608.2	human	genbank	58_37c	+1	validated	missense	c.1339	p.E447K	1.000	HMMPfam_FragX_IP	HMMPfam_FragX_IP	-	no_errors
DNAH17	0	genome.wustl.edu	37	17	76433854	76433854	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	17	76433854	76433854	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	58_37c	-1	known	missense	c.11884	p.A3962T	1.000	HMMPfam_Dynein_heavy	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000211459	0	genome.wustl.edu	37	MT	1273	1273	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	MT	1273	1273	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
FAM21C	0	genome.wustl.edu	37	10	46254776	46254776	+	Missense_Mutation	SNP	A	A	C	rs2596979	byFrequency	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	10	46254776	46254776	A	C	SNP	FAM21C	NM_015262.2	human	genbank	58_37c	+1	validated	missense	c.1562	p.Y521S	0.965	NULL	NULL	-	no_errors
FBXW7	0	genome.wustl.edu	37	4	153253808	153253808	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	4	153253808	153253808	G	-	DEL	FBXW7	NM_033632.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.925	p.R309fs	1.000	HMMPfam_F-box,HMMSmart_SM00256,superfamily_WD40 repeat-like,superfamily_F-box domain	HMMSmart_SM00320,HMMPfam_F-box,HMMSmart_SM00256,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_F-box domain	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29623251	29623252	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	20	29623251	29623252	-	A	INS	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	frame_shift_ins	c.63_64	p.S24fs	1.000:1.000	superfamily_Actin_crosslink,HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
GOLGA6L1	0	genome.wustl.edu	37	15	22743235	22743235	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	15	22743235	22743235	A	G	SNP	GOLGA6L1	NM_001001413.3	human	genbank	58_37c	+1	provisional	silent	c.1620	p.R540	0.274	NULL	NULL	-	no_errors
GPATCH8	0	genome.wustl.edu	37	17	42477336	42477336	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	17	42477336	42477336	C	T	SNP	GPATCH8	NM_001002909.1	human	genbank	58_37c	-1	validated	silent	c.2109	p.E703	0.813	NULL	HMMPfam_G-patch,HMMSmart_SM00443,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
KCNG4	0	genome.wustl.edu	37	16	84270972	84270972	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	16	84270972	84270972	G	A	SNP	KCNG4	NM_172347.1	human	genbank	58_37c	-1	reviewed	silent	c.120	p.Y40	1.000	NULL	HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
KCNQ2	0	genome.wustl.edu	37	20	62045493	62045493	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	20	62045493	62045493	A	G	SNP	KCNQ2	NM_172107.2	human	genbank	58_37c	-1	reviewed	missense	c.1579	p.F527L	1.000	HMMPfam_KCNQ_channel	HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_Voltage-gated potassium channels	-	no_errors
KCTD3	0	genome.wustl.edu	37	1	215753269	215753269	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	215753269	215753269	C	G	SNP	KCTD3	NM_016121.3	human	genbank	58_37c	+1	validated	missense	c.553	p.R185G	0.996	superfamily_WD40 repeat-like	HMMSmart_SM00225,HMMSmart_SM00320,HMMPfam_K_tetra,superfamily_WD40 repeat-like,superfamily_POZ domain,PatternScan_WD_REPEATS_1	-	no_errors
KIF20B	0	genome.wustl.edu	37	10	91483856	91483856	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	10	91483856	91483856	T	-	DEL	KIF20B	NM_016195.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.1858	p.F620fs	1.000	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KRT38	0	genome.wustl.edu	37	17	39595484	39595484	+	Nonsense_Mutation	SNP	G	G	A	rs148768443	byFrequency	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	17	39595484	39595484	G	A	SNP	KRT38	NM_006771.3	human	genbank	58_37c	-1	reviewed	nonsense	c.703	p.Q235*	0.996	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
LOC100287354	0	genome.wustl.edu	37	9	68455105	68455105	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	9	68455105	68455105	G	A	SNP	LOC100287354	XM_002344262.1	human	genbank	58_37c	+1	model	missense	c.224	p.R75H	0.000	NULL	PatternScan_COX1_CUB	-	no_errors
LOC440419	0	genome.wustl.edu	37	17	25746626	25746626	+	RNA	SNP	A	A	G	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	17	25746626	25746626	A	G	SNP	LOC440419	XR_040504.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.091	-	-	-	no_errors
LOC643677	0	genome.wustl.edu	37	13	103393722	103393722	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	13	103393722	103393722	C	A	SNP	LOC643677	XM_002344085.1	human	genbank	58_37c	-1	model	missense	c.9112	p.D3038Y	0.001	NULL	NULL	-	no_errors
LRIT3	0	genome.wustl.edu	37	4	110789053	110789053	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	4	110789053	110789053	C	A	SNP	LRIT3	NM_198506.2	human	genbank	58_37c	+1	validated	silent	c.711	p.T237	0.971	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
LRRC4B	0	genome.wustl.edu	37	19	51022151	51022151	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	19	51022151	51022151	G	T	SNP	LRRC4B	NM_001080457.1	human	genbank	58_37c	-1	provisional	missense	c.819	p.F273L	1.000	superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
MARCH1	0	genome.wustl.edu	37	4	164507069	164507069	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	4	164507069	164507069	G	A	SNP	MARCH1	NM_017923.3	human	genbank	58_37c	-1	validated	silent	c.204	p.C68	1.000	HMMSmart_RINGv,HMMPfam_zf-C3HC4	HMMSmart_RINGv,HMMPfam_zf-C3HC4	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100637074	100637074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	7	100637074	100637074	G	A	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.3659	p.R1220H	0.000	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100639210	100639211	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	7	100639210	100639211	-	A	INS	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	frame_shift_ins	c.5795_5796	p.A1933fs	0.000:0.000	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100639217	100639217	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	7	100639217	100639217	A	-	DEL	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	frame_shift_del	c.5802	p.G1935fs	0.001	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
NBPF10	0	genome.wustl.edu	37	1	145323667	145323667	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	145323667	145323667	C	G	SNP	NBPF10	NM_001039703.4	human	genbank	58_37c	+1	provisional	missense	c.3729	p.D1243E	0.002	NULL	HMMPfam_DUF1220	-	no_errors
NR1H2	0	genome.wustl.edu	37	19	50881822	50881823	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	19	50881822	50881823	-	CAG	INS	NR1H2	NM_007121.4	human	genbank	58_37c	+1	validated	in_frame_ins	c.516_517	p.175in_frame_insQ	0.999:1.000	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
NUSAP1	0	genome.wustl.edu	37	15	41669445	41669445	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	15	41669445	41669445	A	-	DEL	NUSAP1	NM_016359.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.1175	p.H392fs	0.004	NULL	NULL	-	no_errors
PDE6C	0	genome.wustl.edu	37	10	95394645	95394645	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	10	95394645	95394645	A	C	SNP	PDE6C	NM_006204.3	human	genbank	58_37c	+1	reviewed	missense	c.1250	p.H417P	1.000	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_GAF,HMMSmart_HDc,superfamily_SSF109604,superfamily_SSF55781	-	no_errors
POTEH	0	genome.wustl.edu	37	22	16287562	16287562	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	22	16287562	16287562	G	C	SNP	POTEH	NM_001136213.1	human	genbank	58_37c	-1	provisional	missense	c.324	p.C108W	0.024	NULL	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
POU2F2	0	genome.wustl.edu	37	19	42599447	42599447	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	19	42599447	42599447	G	T	SNP	POU2F2	NM_002698.2	human	genbank	58_37c	-1	validated	missense	c.1074	p.S358R	1.000	NULL	HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_1,PatternScan_POU_2,HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,superfamily_Lambda_like_DNA,PatternScan_HOMEOBOX_1	-	no_errors
RBMX	0	genome.wustl.edu	37	X	135960146	135960147	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	X	135960146	135960147	-	AA	INS	RBMX	NM_002139.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.316_315	p.P105fs	1.000:1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RBM1CTR,superfamily_RNA-binding domain RBD	-	no_errors
RBMX	0	genome.wustl.edu	37	X	135960230	135960230	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	X	135960230	135960230	C	T	SNP	RBMX	NM_002139.3	human	genbank	58_37c	-1	reviewed	missense	c.232	p.A78T	1.000	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RBM1CTR,superfamily_RNA-binding domain RBD	-	no_errors
STELLAR	0	genome.wustl.edu	37	14	36841171	36841171	+	RNA	SNP	A	A	G	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	14	36841171	36841171	A	G	SNP	STELLAR	XR_017914.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.005	-	-	-	no_errors
SVEP1	0	genome.wustl.edu	37	9	113170187	113170187	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	9	113170187	113170187	C	G	SNP	SVEP1	NM_153366.3	human	genbank	58_37c	-1	validated	missense	c.7693	p.G2565R	1.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Pentaxin,HMMSmart_SM00159,HMMSmart_SM00179,HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_HYR,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,superfamily_Complement control module/SCR domain,PatternScan_EGF_CA,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
TECTA	0	genome.wustl.edu	37	11	121031032	121031032	+	Silent	SNP	C	C	T	rs151056317	byFrequency	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	11	121031032	121031032	C	T	SNP	TECTA	NM_005422.2	human	genbank	58_37c	+1	reviewed	silent	c.4878	p.N1626	0.385	HMMPfam_VWD,HMMSmart_SM00216	PatternScan_FA58C_2,HMMPfam_Zona_pellucida,HMMSmart_SM00241,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMPfam_NIDO,HMMSmart_SM00539,HMMSmart_SM00181,HMMSmart_SM00215,PatternScan_EGF_2,HMMPfam_C8,PatternScan_ZP_1,HMMPfam_TIL,superfamily_EGF/Laminin	-	no_errors
THAP7	0	genome.wustl.edu	37	22	21354432	21354432	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	22	21354432	21354432	C	T	SNP	THAP7	NM_001008695.1	human	genbank	58_37c	-1	validated	missense	c.667	p.G223R	0.731	NULL	HMMPfam_THAP,HMMSmart_DM3	-	no_errors
THBS4	0	genome.wustl.edu	37	5	79375018	79375018	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	5	79375018	79375018	G	A	SNP	THBS4	NM_003248.4	human	genbank	58_37c	+1	reviewed	silent	c.2448	p.T816	0.001	HMMPfam_TSP_C,superfamily_ConA_like_lec_gl	HMMSmart_EGF_CA,HMMSmart_TSPN,HMMPfam_TSP_3,HMMSmart_EGF,HMMPfam_TSP_C,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF103647,superfamily_SSF57196	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578382	7578382	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	17	7578382	7578382	G	C	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.548	p.S183*	0.011	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TXNDC16	0	genome.wustl.edu	37	14	52978095	52978095	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	14	52978095	52978095	C	A	SNP	TXNDC16	NM_020784.2	human	genbank	58_37c	-1	validated	nonsense	c.619	p.E207*	0.981	NULL	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin	-	no_errors
TXNIP	0	genome.wustl.edu	37	1	145440077	145440077	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	145440077	145440077	A	G	SNP	TXNIP	NM_006472.3	human	genbank	58_37c	+1	validated	missense	c.511	p.M171V	1.000	superfamily_Ig_E-set	HMMPfam_Arrestin_N,HMMPfam_Arrestin_C,superfamily_Ig_E-set	-	no_errors
YEATS4	0	genome.wustl.edu	37	12	69784092	69784093	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	12	69784092	69784093	-	A	INS	YEATS4	NM_006530.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.680_681	p.*228fs	0.999:0.960	NULL	HMMPfam_YEATS	-	no_errors
ZC3H11A	0	genome.wustl.edu	37	1	203798941	203798941	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	203798941	203798941	C	T	SNP	ZC3H11A	NM_014827.4	human	genbank	58_37c	+1	validated	missense	c.536	p.T179I	0.997	NULL	HMMSmart_ZnF_C3H1	-	no_errors
ZMYM3	0	genome.wustl.edu	37	X	70462188	70462188	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	X	70462188	70462188	G	C	SNP	ZMYM3	NM_005096.3	human	genbank	58_37c	-1	reviewed	missense	c.3634	p.L1212V	1.000	NULL	HMMPfam_zf-FCS,HMMSmart_SM00746	-	no_errors
ZNF687	0	genome.wustl.edu	37	1	151259248	151259248	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SP-01A-11D-A099-09	TCGA-A1-A0SP-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3ae9617-b6cd-4d98-b631-39bd4afd3c4e	a409caa8-efd1-4fc8-9753-fa253e65c58d	1	151259248	151259248	G	A	SNP	ZNF687	NM_020832.1	human	genbank	58_37c	+1	provisional	missense	c.481	p.D161N	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
