Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
CA9	768	genome.wustl.edu	37	9	35674290	35674290	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	9	35674290	35674290	G	T	SNP	CA9	NM_001216.2	human	genbank	58_37c	+1	reviewed	missense	c.334	p.D112Y	1.000	NULL	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd,PatternScan_ALPHA_CA_1	-	no_errors
CLIC5	53405	genome.wustl.edu	37	6	46047880	46047880	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	46047880	46047880	C	T	SNP	CLIC5	NM_001114086.1	human	genbank	58_37c	-1	validated	missense	c.100	p.D34N	0.023	NULL	superfamily_Glutathione S-transferase (GST) C-terminal domain,superfamily_Thioredoxin-like	-	no_errors
COL1A2	1278	genome.wustl.edu	37	7	94043006	94043006	+	Missense_Mutation	SNP	C	C	T	rs140434765	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	7	94043006	94043006	C	T	SNP	COL1A2	NM_000089.3	human	genbank	58_37c	+1	reviewed	missense	c.1562	p.A521V	1.000	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMPfam_Collagen	-	no_errors
CYSLTR2	57105	genome.wustl.edu	37	13	49281015	49281015	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	13	49281015	49281015	G	A	SNP	CYSLTR2	NM_020377.2	human	genbank	58_37c	+1	reviewed	missense	c.62	p.G21D	0.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
DNAH17	8632	genome.wustl.edu	37	17	76556902	76556902	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	17	76556902	76556902	C	A	SNP	DNAH17	ENST00000389840	human	ensembl	58_37c	-1	known	missense	c.1951	p.D651Y	1.000	HMMPfam_DHC_N1	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH3	55567	genome.wustl.edu	37	16	20974834	20974834	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	16	20974834	20974834	C	T	SNP	DNAH3	NM_017539.1	human	genbank	58_37c	-1	provisional	missense	c.10372	p.E3458K	0.166	HMMPfam_Dynein_heavy	HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EEA1	8411	genome.wustl.edu	37	12	93226389	93226389	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	12	93226389	93226389	C	G	SNP	EEA1	NM_003566.3	human	genbank	58_37c	-1	validated	missense	c.1153	p.E385Q	1.000	NULL	HMMPfam_FYVE,HMMSmart_FYVE,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE_PHD_ZnF,HMMSmart_ZnF_C2H2	-	no_errors
ENSG00000245472	0	genome.wustl.edu	37	19	53207634	53207634	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	19	53207634	53207634	G	A	SNP	ZNF611	NM_030972.3	human	genbank	58_37c	-1	validated	3_prime_untranslated_region	c.*556	NULL	0.000	-	-	-	no_errors
FANCM	57697	genome.wustl.edu	37	14	45658083	45658085	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	14	45658083	45658085	GAA	-	DEL	FANCM	NM_020937.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.4858_4860	p.E1622in_frame_del	1.000:0.998:0.996	NULL	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_ERCC4,superfamily_RuvA domain 2-like,superfamily_Restriction endonuclease-like,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
FBXO11	80204	genome.wustl.edu	37	2	48047527	48047527	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	2	48047527	48047527	C	T	SNP	FBXO11	NM_025133.3	human	genbank	58_37c	-1	reviewed	missense	c.1519	p.D507N	1.000	HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like,superfamily_SSF81383	HMMPfam_F-box,HMMSmart_FBOX,HMMPfam_zf-UBR,HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like,superfamily_SSF81383	-	no_errors
GSTA5	221357	genome.wustl.edu	37	6	52701123	52701123	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	52701123	52701123	G	A	SNP	GSTA5	NM_153699.1	human	genbank	58_37c	-1	provisional	silent	c.183	p.D61	1.000	HMMPfam_GST_N,superfamily_Thiordxn-like_fd	HMMPfam_GST_N,HMMPfam_GST_C,superfamily_GST_C_like,superfamily_Thiordxn-like_fd	-	no_errors
GTPBP3	84705	genome.wustl.edu	37	19	17448438	17448438	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	19	17448438	17448438	G	C	SNP	GTPBP3	NM_133644.2	human	genbank	58_37c	+1	validated	missense	c.18	p.W6C	0.785	NULL	HMMPfam_MMR_HSR1,HMMPfam_TrmE_N,superfamily_SSF52540	-	no_errors
IL10RB	3588	genome.wustl.edu	37	21	34652113	34652113	+	Missense_Mutation	SNP	C	C	T	rs138134904	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	21	34652113	34652113	C	T	SNP	IL10RB	NM_000628.3	human	genbank	58_37c	+1	reviewed	missense	c.388	p.R130C	0.015	HMMSmart_FN3,superfamily_FN_III-like	HMMSmart_FN3,superfamily_FN_III-like	-	no_errors
IPO4	79711	genome.wustl.edu	37	14	24656970	24656970	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	14	24656970	24656970	G	A	SNP	IPO4	NM_024658.3	human	genbank	58_37c	-1	validated	missense	c.311	p.S104L	0.889	superfamily_ARM repeat	HMMPfam_HEAT,HMMPfam_IBN_N,PatternScan_PA2_HIS,superfamily_ARM repeat	-	no_errors
ITGB1	3688	genome.wustl.edu	37	10	33217185	33217185	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	10	33217185	33217185	T	C	SNP	ITGB1	NM_033667.2	human	genbank	58_37c	-1	reviewed	silent	c.384	p.P128	0.215	HMMPfam_Integrin_beta,HMMSmart_INB	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,HMMSmart_PSI,HMMPfam_Integrin_B_tail,superfamily_Integrin_bsu_tail,PatternScan_EGF_1,HMMPfam_EGF_2,HMMPfam_Integrin_b_cyt,PatternScan_INTEGRIN_BETA,superfamily_SSF53300,superfamily_SSF57196,superfamily_SSF69179	-	no_errors
LOC100287385	0	genome.wustl.edu	37	16	3191255	3191255	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	16	3191255	3191255	C	T	SNP	LOC100287385	XM_002343446.1	human	genbank	58_37c	-1	model	missense	c.175	p.E59K	0.314	NULL	NULL	-	no_errors
LOC340268	340268	genome.wustl.edu	37	7	9766263	9766263	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	7	9766263	9766263	C	T	SNP	LOC340268	XR_041608.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LRP2	4036	genome.wustl.edu	37	2	170060630	170060630	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	2	170060630	170060630	C	G	SNP	LRP2	NM_004525.2	human	genbank	58_37c	-1	reviewed	missense	c.7867	p.G2623R	1.000	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
LRRC16A	55604	genome.wustl.edu	37	6	25600890	25600890	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	25600890	25600890	G	A	SNP	LRRC16A	NM_017640.5	human	genbank	58_37c	+1	validated	silent	c.3468	p.R1156	0.853	NULL	superfamily_SSF52047	-	no_errors
MGAM	8972	genome.wustl.edu	37	7	141780655	141780655	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	7	141780655	141780655	C	T	SNP	MGAM	ENST00000475668	human	ensembl	58_37c	+1	known	missense	c.5915	p.S1972F	0.012	NULL	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL	-	no_errors
NNT	23530	genome.wustl.edu	37	5	43704416	43704416	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	5	43704416	43704416	C	G	SNP	NNT	NM_012343.3	human	genbank	58_37c	+1	reviewed	missense	c.3171	p.F1057L	1.000	HMMPfam_PNTB,superfamily_SSF52467	HMMPfam_PNTB,HMMPfam_AlaDh_PNT_C,HMMPfam_AlaDh_PNT_N,PatternScan_ALADH_PNT_1,PatternScan_ALADH_PNT_2,superfamily_NAD(P)-bd,superfamily_SSF52283,superfamily_SSF52467	-	no_errors
OGN	4969	genome.wustl.edu	37	9	95147960	95147960	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	9	95147960	95147960	C	G	SNP	OGN	NM_014057.3	human	genbank	58_37c	-1	reviewed	missense	c.839	p.G280A	1.000	superfamily_L domain-like	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors
PTK7	5754	genome.wustl.edu	37	6	43099859	43099859	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	43099859	43099859	G	A	SNP	PTK7	NM_002821.3	human	genbank	58_37c	+1	reviewed	silent	c.918	p.Q306	0.998	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
SARM1	23098	genome.wustl.edu	37	17	26723195	26723195	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	17	26723195	26723195	G	T	SNP	SARM1	ENST00000379061	human	ensembl	58_37c	+1	known	nonsense	c.2059	p.E687*	1.000	HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain	HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_ARM repeat	-	no_errors
SHROOM4	57477	genome.wustl.edu	37	X	50376535	50376535	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	X	50376535	50376535	G	A	SNP	SHROOM4	NM_020717.3	human	genbank	58_37c	-1	reviewed	silent	c.2538	p.S846	0.936	NULL	HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
STK31	56164	genome.wustl.edu	37	7	23825188	23825188	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	7	23825188	23825188	G	C	SNP	STK31	NM_031414.3	human	genbank	58_37c	+1	reviewed	missense	c.2240	p.R747P	1.000	HMMSmart_SM00220	HMMSmart_SM00220,HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Protein kinase-like (PK-like),superfamily_Tudor/PWWP/MBT	-	no_errors
UBE2Q1	55585	genome.wustl.edu	37	1	154528347	154528350	+	Frame_Shift_Del	DEL	CTTT	CTTT	-	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	CTTT	CTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	1	154528347	154528350	CTTT	-	DEL	UBE2Q1	NM_017582.6	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.421_418	p.K140fs	1.000:1.000:1.000:1.000	NULL	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like	-	no_errors
VPS53	55275	genome.wustl.edu	37	17	559191	559191	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	17	559191	559191	C	T	SNP	VPS53	NM_001128159.1	human	genbank	58_37c	-1	reviewed	silent	c.375	p.V125	0.922	HMMPfam_Vps53_N	HMMPfam_Vps53_N	-	no_errors
WIF1	11197	genome.wustl.edu	37	12	65514331	65514331	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	12	65514331	65514331	C	T	SNP	WIF1	NM_007191.4	human	genbank	58_37c	-1	reviewed	missense	c.154	p.E52K	1.000	HMMPfam_WIF,HMMSmart_WIF	HMMPfam_WIF,HMMSmart_WIF,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2	-	no_errors
WTAP	9589	genome.wustl.edu	37	6	160169354	160169354	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	6	160169354	160169354	G	T	SNP	WTAP	NM_004906.3	human	genbank	58_37c	+1	reviewed	silent	c.405	p.L135	1.000	NULL	NULL	-	no_errors
ZNF840	0	genome.wustl.edu	37	20	45093521	45093521	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A04X-01A-21W-A050-09	TCGA-A2-A04X-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	66a73891-2fea-450c-8224-0865d98b4346	20662b69-e7e6-4f78-a7fb-2c1562ca4223	20	45093521	45093521	A	G	SNP	ZNF840	XM_001722110.1	human	genbank	58_37c	+1	model	missense	c.415	p.T139A	0.990	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
