Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC6	0	genome.wustl.edu	37	16	16255417	16255417	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	16	16255417	16255417	G	A	SNP	ABCC6	NM_001171.5	human	genbank	58_37c	-1	reviewed	missense	c.3511	p.L1171F	1.000	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ARFGEF1	0	genome.wustl.edu	37	8	68130367	68130367	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	8	68130367	68130367	C	T	SNP	ARFGEF1	NM_006421.3	human	genbank	58_37c	-1	reviewed	missense	c.4345	p.E1449K	1.000	superfamily_ARM-type_fold	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_DUF1981,superfamily_ARM-type_fold	-	no_errors
ATN1	0	genome.wustl.edu	37	12	7045891	7045892	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	12	7045891	7045892	-	CAG	INS	ATN1	NM_001007026.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.1461_1462	p.491in_frame_insQ	0.002:0.834	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
CCL13	0	genome.wustl.edu	37	17	32683553	32683554	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	32683553	32683554	-	C	INS	CCL13	NM_005408.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.8_9	p.S4fs	0.324:0.310	NULL	PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines	-	no_errors
CDH1	0	genome.wustl.edu	37	16	68842417	68842418	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	16	68842417	68842418	-	G	INS	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.478_479	p.P160fs	1.000:0.999	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
DLGAP4	0	genome.wustl.edu	37	20	35060343	35060343	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	20	35060343	35060343	C	T	SNP	DLGAP4	NM_014902.4	human	genbank	58_37c	+1	reviewed	missense	c.223	p.H75Y	1.000	NULL	HMMPfam_GKAP	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88536014	88536031	+	In_Frame_Del	DEL	AGCAGTGACAGCAGCAAC	AGCAGTGACAGCAGCAAC	-	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	AGCAGTGACAGCAGCAAC	AGCAGTGACAGCAGCAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	4	88536014	88536031	AGCAGTGACAGCAGCAAC	-	DEL	DSPP	NM_014208.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.2200_2217	p.SSNSSD737in_frame_del	0.982:0.984:0.971:0.984:0.992:0.996:0.999:0.998:0.991:0.966:0.949:0.901:0.734:0.619:0.291:0.240:0.238:0.228	NULL	NULL	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88537243	88537243	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	4	88537243	88537243	C	A	SNP	DSPP	NM_014208.3	human	genbank	58_37c	+1	reviewed	missense	c.3429	p.D1143E	0.451	NULL	NULL	-	no_errors
ENSG00000251119	0	genome.wustl.edu	37	17	42266336	42266336	+	RNA	SNP	A	A	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	42266336	42266336	A	T	SNP	ENSG00000251119	ENST00000509949	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.041	-	-	-	no_errors
EPPK1	0	genome.wustl.edu	37	8	144940331	144940331	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	8	144940331	144940331	C	T	SNP	EPPK1	NM_031308.1	human	genbank	58_37c	-1	validated	missense	c.7091	p.R2364Q	0.940	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	-	pseudogene
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	In_Frame_Ins	INS	-	-	GCA	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	141107536	141107537	-	GCA	INS	FAM157B	NM_001145249.1	human	genbank	58_37c	+1	inferred	in_frame_ins	c.218_219	p.77in_frame_insQ	0.033:0.036	NULL	NULL	-	no_errors
FMNL2	0	genome.wustl.edu	37	2	153476066	153476067	+	In_Frame_Ins	INS	-	-	CCA	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	2	153476066	153476067	-	CCA	INS	FMNL2	NM_052905.3	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.1671_1672	p.561in_frame_insP	0.918:0.955	NULL	HMMSmart_FH2,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
GIGYF2	0	genome.wustl.edu	37	2	233655446	233655446	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	2	233655446	233655446	C	T	SNP	GIGYF2	NM_001103147.1	human	genbank	58_37c	+1	reviewed	nonsense	c.817	p.R273*	1.000	NULL	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF	-	no_errors
GIGYF2	0	genome.wustl.edu	37	2	233712227	233712229	+	In_Frame_Del	DEL	ACA	ACA	-	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	2	233712227	233712229	ACA	-	DEL	GIGYF2	NM_001103147.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3693_3695	p.Q1235in_frame_del	0.057:0.094:0.124	NULL	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF	-	no_errors
GOLGA8E	0	genome.wustl.edu	37	15	23444016	23444016	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	15	23444016	23444016	G	A	SNP	GOLGA8E	ENST00000450934	human	ensembl	58_37c	+1	known	missense	c.683	p.G228E	0.986	NULL	NULL	-	no_errors
GPR61	0	genome.wustl.edu	37	1	110086977	110086977	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	110086977	110086977	G	A	SNP	GPR61	NM_031936.4	human	genbank	58_37c	+1	validated	missense	c.1333	p.A445T	0.617	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
GRIA1	0	genome.wustl.edu	37	5	153143997	153143997	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	5	153143997	153143997	C	T	SNP	GRIA1	NM_000827.3	human	genbank	58_37c	+1	reviewed	silent	c.1827	p.S609	1.000	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
GRIA1	0	genome.wustl.edu	37	5	153175111	153175111	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	5	153175111	153175111	C	T	SNP	GRIA1	NM_001114183.1	human	genbank	58_37c	+1	reviewed	silent	c.2346	p.Y782	1.000	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
HOXC4	0	genome.wustl.edu	37	12	54448950	54448950	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	12	54448950	54448950	G	A	SNP	HOXC4	NM_014620.4	human	genbank	58_37c	+1	reviewed	silent	c.756	p.P252	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
ICAM4	0	genome.wustl.edu	37	19	10398280	10398280	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	19	10398280	10398280	G	A	SNP	ICAM4	NM_001544.3	human	genbank	58_37c	+1	reviewed	missense	c.463	p.V155M	0.886	superfamily_Immunoglobulin	HMMPfam_ICAM_N,superfamily_Immunoglobulin	-	no_errors
KIAA1109	0	genome.wustl.edu	37	4	123227196	123227197	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	4	123227196	123227197	-	A	INS	KIAA1109	NM_015312.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.9837_9838	p.R3279fs	0.992:1.000	NULL	PatternScan_ASP_PROTEASE,HMMPfam_FSA_C	-	no_errors
LDLRAD1	0	genome.wustl.edu	37	1	54479914	54479914	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	54479914	54479914	G	A	SNP	LDLRAD1	NM_001010978.2	human	genbank	58_37c	-1	provisional	missense	c.197	p.T66I	0.002	NULL	HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	-	no_errors
LEPRE1	0	genome.wustl.edu	37	1	43212929	43212929	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	43212929	43212929	C	G	SNP	LEPRE1	ENST00000236040	human	ensembl	58_37c	-1	known	missense	c.2069	p.R690P	0.007	NULL	HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc,superfamily_SSF48452	-	no_errors
LOC100132738	0	genome.wustl.edu	37	2	3184902	3184902	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	2	3184902	3184902	G	A	SNP	LOC100132738	XM_001714359.2	human	genbank	58_37c	+1	model	missense	c.1576	p.D526N	0.096	NULL	NULL	-	no_errors
LOC100288578	0	genome.wustl.edu	37	1	568412	568412	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	568412	568412	T	C	SNP	LOC100288578	XR_078216.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC642373	0	genome.wustl.edu	37	9	40293064	40293064	+	RNA	SNP	G	G	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	40293064	40293064	G	T	SNP	LOC642373	XR_078402.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC644604	0	genome.wustl.edu	37	2	107314392	107314392	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	2	107314392	107314392	C	A	SNP	LOC644604	XR_017493.3	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOXL4	0	genome.wustl.edu	37	10	100013398	100013398	+	Missense_Mutation	SNP	G	G	T	rs144191380	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	10	100013398	100013398	G	T	SNP	LOXL4	NM_032211.6	human	genbank	58_37c	-1	reviewed	missense	c.1747	p.R583S	1.000	HMMPfam_Lysyl_oxidase	HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,HMMSmart_SM00202,superfamily_SRCR-like,PatternScan_LYSYL_OXIDASE	-	no_errors
MCOLN2	0	genome.wustl.edu	37	1	85397158	85397158	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	85397158	85397158	T	G	SNP	MCOLN2	NM_153259.2	human	genbank	58_37c	-1	reviewed	missense	c.1429	p.I477L	0.001	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors
MEF2A	0	genome.wustl.edu	37	15	100252710	100252712	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	15	100252710	100252712	CAG	-	DEL	MEF2A	NM_005587.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1234_1236	p.Q415in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_SRF-TF,HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	-	no_errors
MUC3A	0	genome.wustl.edu	37	7	100550032	100550033	+	In_Frame_Ins	INS	-	-	CCT	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	7	100550032	100550033	-	CCT	INS	MUC3A	XM_001725354.2	human	genbank	58_37c	+1	model	in_frame_ins	c.613_614	p.208in_frame_insS	0.165:0.003	NULL	HMMPfam_SEA,HMMSmart_SM00200,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279837	46279839	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	20	46279837	46279839	CAG	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3763_3765	p.Q1258in_frame_del	0.584:0.607:0.598	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
NCOR2	0	genome.wustl.edu	37	12	124887058	124887059	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	12	124887058	124887059	-	GCT	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.1532_1531	p.511in_frame_insQ	0.999:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NUP155	0	genome.wustl.edu	37	5	37310654	37310654	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	5	37310654	37310654	C	G	SNP	NUP155	NM_153485.1	human	genbank	58_37c	-1	reviewed	missense	c.2628	p.K876N	1.000	HMMPfam_Nucleoporin	HMMPfam_Nucleoporin	-	no_errors
OR2L3	0	genome.wustl.edu	37	1	248224884	248224884	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	248224884	248224884	A	G	SNP	OR2L3	NM_001004687.1	human	genbank	58_37c	+1	provisional	missense	c.901	p.T301A	0.052	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PARP14	0	genome.wustl.edu	37	3	122419979	122419979	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	3	122419979	122419979	C	G	SNP	PARP14	NM_017554.2	human	genbank	58_37c	+1	validated	missense	c.2578	p.L860V	0.000	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like	HMMPfam_Macro,HMMSmart_SM00506,HMMPfam_PARP,superfamily_Macro domain-like,superfamily_ADP-ribosylation	-	no_errors
PHACTR3	0	genome.wustl.edu	37	20	58381222	58381222	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	20	58381222	58381222	G	C	SNP	PHACTR3	NM_080672.3	human	genbank	58_37c	+1	reviewed	missense	c.1301	p.R434P	1.000	NULL	HMMPfam_RPEL,HMMSmart_SM00707	-	no_errors
PHLDA1	0	genome.wustl.edu	37	12	76424938	76424940	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	12	76424938	76424940	TGC	-	DEL	PHLDA1	NM_007350.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.584_582	p.Q198in_frame_del	0.146:0.153:0.155	HMMSmart_PH,superfamily_SSF50729	HMMSmart_PH,superfamily_SSF50729	-	no_errors
PRKCH	0	genome.wustl.edu	37	14	61997145	61997145	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	14	61997145	61997145	C	T	SNP	PRKCH	NM_006255.3	human	genbank	58_37c	+1	reviewed	silent	c.1593	p.Y531	0.878	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_Cysteine-rich domain	-	no_errors
PTPN3	0	genome.wustl.edu	37	9	112151535	112151535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	112151535	112151535	G	A	SNP	PTPN3	NM_002829.3	human	genbank	58_37c	-1	reviewed	missense	c.2231	p.T744M	1.000	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799	HMMPfam_Y_phosphatase,HMMSmart_PTPc,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52799,superfamily_SSF54236	-	no_errors
RAB37	0	genome.wustl.edu	37	17	72739280	72739280	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	72739280	72739280	G	A	SNP	RAB37	NM_001006638.2	human	genbank	58_37c	+1	validated	missense	c.259	p.A87T	0.999	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RAD21L1	0	genome.wustl.edu	37	20	1209137	1209137	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	20	1209137	1209137	T	C	SNP	RAD21L1	NM_001136566.2	human	genbank	58_37c	+1	validated	silent	c.40	p.L14	0.998	HMMPfam_Rad21_Rec8_N	HMMPfam_Rad21_Rec8,HMMPfam_Rad21_Rec8_N	-	no_errors
RAI1	0	genome.wustl.edu	37	17	17697099	17697100	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	17697099	17697100	GC	-	DEL	RAI1	NM_030665.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.837_838	p.Q280fs	0.891:0.907	NULL	HMMSmart_SM00249	-	no_errors
RCL1	0	genome.wustl.edu	37	9	4827053	4827053	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	4827053	4827053	C	T	SNP	RCL1	ENST00000381732	human	ensembl	58_37c	+1	known	missense	c.404	p.P135L	0.000	NULL	HMMPfam_RTC,superfamily_RNA3apos_cycl/enolpyr_transf_A/B	-	no_errors
RMI1	0	genome.wustl.edu	37	9	86617623	86617623	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	86617623	86617623	C	T	SNP	RMI1	NM_024945.2	human	genbank	58_37c	+1	validated	silent	c.1722	p.F574	0.982	NULL	HMMPfam_tRNA_anti,HMMPfam_DUF1767	-	no_errors
RNU11	0	genome.wustl.edu	37	1	28975208	28975208	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	1	28975208	28975208	T	C	SNP	RNU11	NR_004407.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.000	-	-	-	no_errors
RYR3	0	genome.wustl.edu	37	15	33961576	33961576	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	15	33961576	33961576	C	T	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	nonsense	c.5641	p.Q1881*	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SELPLG	0	genome.wustl.edu	37	12	109017677	109017678	+	In_Frame_Ins	INS	-	-	CCA	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	12	109017677	109017678	-	CCA	INS	SELPLG	ENST00000228463	human	ensembl	58_37c	-1	known	in_frame_ins	c.407_406	p.P136in_frame_insLA	0.004:0.003	NULL	NULL	-	no_errors
SGCA	0	genome.wustl.edu	37	17	48248012	48248012	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	48248012	48248012	A	G	SNP	SGCA	NM_000023.2	human	genbank	58_37c	+1	reviewed	missense	c.968	p.D323G	1.000	HMMPfam_Sarcoglycan_2	HMMSmart_SM00736,HMMPfam_Sarcoglycan_2,superfamily_Cadherin-like	-	no_errors
SHPRH	0	genome.wustl.edu	37	6	146240555	146240555	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	6	146240555	146240555	G	A	SNP	SHPRH	NM_001042683.2	human	genbank	58_37c	-1	validated	nonsense	c.4093	p.R1365*	1.000	NULL	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00184,HMMSmart_SM00249,HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00487,PatternScan_ZF_RING_1,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_""Winged helix"" DNA-binding domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box"	-	no_errors
SMARCA1	0	genome.wustl.edu	37	X	128657222	128657222	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	X	128657222	128657222	C	T	SNP	SMARCA1	NM_003069.3	human	genbank	58_37c	-1	reviewed	silent	c.126	p.A42	0.999	NULL	HMMPfam_SNF2_N,HMMSmart_SM00717,HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_Homeodomain-like,HMMSmart_SM00487,HMMPfam_HAND,superfamily_HAND domain of the nucleosome remodeling ATPase ISWI,HMMPfam_SLIDE,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SNAPC4	0	genome.wustl.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	GCT	-	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	139277995	139277997	GCT	-	DEL	SNAPC4	NM_003086.2	human	genbank	58_37c	-1	validated	in_frame_del	c.1626_1624	p.S542in_frame_del	0.000:0.005:0.005	NULL	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding	-	no_errors
SRPRB	0	genome.wustl.edu	37	3	133524816	133524816	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	3	133524816	133524816	G	A	SNP	SRPRB	NM_021203.3	human	genbank	58_37c	+1	reviewed	missense	c.124	p.V42M	0.838	NULL	HMMPfam_SRPRB,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SSFA2	0	genome.wustl.edu	37	2	182765477	182765477	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	2	182765477	182765477	T	G	SNP	SSFA2	NM_001130445.1	human	genbank	58_37c	+1	validated	missense	c.558	p.N186K	1.000	NULL	NULL	-	no_errors
SVEP1	0	genome.wustl.edu	37	9	113219551	113219551	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	113219551	113219551	G	A	SNP	SVEP1	NM_153366.3	human	genbank	58_37c	-1	validated	missense	c.3658	p.P1220S	0.705	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Pentaxin,HMMSmart_SM00159,HMMSmart_SM00179,HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_HYR,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,superfamily_Complement control module/SCR domain,PatternScan_EGF_CA,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
TCP10	0	genome.wustl.edu	37	6	167787875	167787876	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	6	167787875	167787876	CT	-	DEL	TCP10	NM_004610.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.753_752	p.E251fs	0.000:0.000	HMMPfam_Tcp10_C	HMMPfam_Tcp10_C	-	no_errors
TM6SF2	0	genome.wustl.edu	37	19	19379464	19379464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	19	19379464	19379464	G	A	SNP	TM6SF2	NM_001001524.2	human	genbank	58_37c	-1	validated	missense	c.584	p.A195V	0.000	NULL	NULL	-	no_errors
TRPM6	0	genome.wustl.edu	37	9	77354721	77354721	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	9	77354721	77354721	A	G	SNP	TRPM6	NM_017662.4	human	genbank	58_37c	-1	reviewed	missense	c.5405	p.I1802T	1.000	HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)	HMMPfam_Alpha_kinase,HMMSmart_SM00811,HMMPfam_Ion_trans,superfamily_Protein kinase-like (PK-like)	-	no_errors
TTC25	0	genome.wustl.edu	37	17	40091966	40091966	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	17	40091966	40091966	C	T	SNP	TTC25	ENST00000377543	human	ensembl	58_37c	+1	known	nonsense	c.361	p.Q121*	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
UBE2W	0	genome.wustl.edu	37	8	74717957	74717957	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	8	74717957	74717957	C	T	SNP	UBE2W	NM_001001481.1	human	genbank	58_37c	-1	validated	missense	c.404	p.R135Q	1.000	HMMPfam_UQ_con,HMMSmart_SM00212	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like	-	no_errors
USP9X	0	genome.wustl.edu	37	X	40990740	40990741	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	X	40990740	40990741	AG	-	DEL	USP9X	NM_001039590.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.273_274	p.E93fs	1.000:1.000	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
UST	0	genome.wustl.edu	37	6	149275038	149275038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	6	149275038	149275038	G	A	SNP	UST	NM_005715.2	human	genbank	58_37c	+1	validated	missense	c.478	p.E160K	0.999	HMMPfam_HS2ST	HMMPfam_HS2ST	-	no_errors
ZFC3H1	0	genome.wustl.edu	37	12	72037937	72037937	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A1FV-01A-11D-A13L-09	TCGA-A2-A1FV-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	51b7064c-d9fc-4312-ad25-b014ef81c821	f2b83096-9f51-4664-b365-747eb146a4d7	12	72037937	72037937	G	T	SNP	ZFC3H1	NM_144982.4	human	genbank	58_37c	-1	validated	missense	c.1441	p.Q481K	1.000	NULL	HMMSmart_SM00386,HMMPfam_zf-C3H1,superfamily_Protein prenylyltransferase	-	no_errors
