Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CAMTA1	23261	genome.wustl.edu	37	1	7730997	7730997	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_015215.1	+1	validated	p.G893	1.000	40	0%	26	15.4%	0	-	-	-	-	HMMPfam_TIG,superfamily_E set domains
EPHA2	1969	genome.wustl.edu	37	1	16464530	16464530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_004431.3	-1	reviewed	p.G377V	0.389	63	0%	25	56%	9	55.5%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CROCC	9696	genome.wustl.edu	37	1	17250857	17250857	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_014675.3	+1	validated	p.S78	0.015	27	0%	20	30%	3	33.3%	-	-	-	NULL
DDOST	1650	genome.wustl.edu	37	1	20979344	20979347	+	Frame_Shift_Del	DEL	CTTT	CTTT	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	CTTT	CTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005216.4	-1	reviewed	p.K371fs	1.000:0.980:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DDOST_48kD
C1QC	714	genome.wustl.edu	37	1	22973728	22973728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001114101.1	+1	reviewed	p.A64T	1.000	36	0%	36	44.4%	28	0%	possibly_damaging(0.952)	deleterious(0.03)	deleterious(0.760)	HMMPfam_Collagen
ARID1A	8289	genome.wustl.edu	37	1	27100207	27100207	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_006015.4	+1	reviewed	p.R1335*	0.945	217	0%	247	42.9%	12	66.6%	-	-	-	NULL
ZCCHC17	51538	genome.wustl.edu	37	1	31810057	31810057	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_016505.2	+1	provisional	p.V54L	1.000	585	0%	668	44.5%	40	52.5%	benign(0.26)	tolerated(0.11)	neutral(0.299)	HMMPfam_S1,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00316
CDCA8	55143	genome.wustl.edu	37	1	38171158	38171158	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_018101.2	+1	validated	p.R210	0.995	212	0%	180	46.7%	29	48.2%	-	-	-	HMMPfam_Borealin
MSH4	4438	genome.wustl.edu	37	1	76365319	76365319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002440.2	+1	validated	p.E849D	0.381	75	0%	179	40.8%	0	-	possibly_damaging(0.912)	tolerated(0.23)	neutral(0.405)	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
CCDC18	343099	genome.wustl.edu	37	1	93667456	93667456	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_206886.2	+1	validated	p.R354*	1.000	70	0%	112	38.4%	0	-	-	-	-	NULL
FNBP1L	54874	genome.wustl.edu	37	1	94009668	94009668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000271234	+1	known	p.P391L	1.000	69	0%	85	48.2%	9	55.5%	probably_damaging(0.985)	tolerated(0.2)	deleterious(0.481)	NULL
NTNG1	22854	genome.wustl.edu	37	1	107867389	107867389	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001113226.1	+1	validated	p.Y244	0.980	107	0%	179	43%	0	-	-	-	-	HMMPfam_Laminin_N,HMMSmart_SM00136
HIPK1	204851	genome.wustl.edu	37	1	114483872	114483872	+	Silent	SNP	C	C	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_198268.1	+1	reviewed	p.L289	1.000	312	0%	571	45.2%	3	33.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NBPF14	25832	genome.wustl.edu	37	1	148011763	148011763	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000310701	-1	known	p.R500K	0.181	52	0%	35	20%	0	-	-	-	-	NULL
TARS2	80222	genome.wustl.edu	37	1	150460464	150460464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_025150.3	+1	provisional	p.P66H	0.999	135	0%	121	28.9%	20	25%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_TGS,superfamily_TGS-like
SETDB1	9869	genome.wustl.edu	37	1	150923546	150923546	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001145415.1	+1	reviewed	p.C731	1.000	283	0%	309	30.7%	18	11.1%	-	-	-	HMMSmart_SM00468,HMMPfam_Pre-SET,superfamily_SET domain
UBE2Q1	55585	genome.wustl.edu	37	1	154524423	154524423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_017582.6	-1	reviewed	p.R333S	1.000	186	0%	245	27.8%	105	38%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
POGK	57645	genome.wustl.edu	37	1	166818940	166818940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_017542.3	+1	reviewed	p.R375L	0.192	177	0%	230	27%	15	0%	possibly_damaging(0.83)	tolerated(0.12)	deleterious(0.576)	HMMPfam_DDE
SCYL3	57147	genome.wustl.edu	37	1	169822886	169822888	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_181093.2	-1	validated	p.E732in_frame_del	1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
FAM5B	57795	genome.wustl.edu	37	1	177250656	177250657	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_021165.2	+1	provisional	p.C782fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CACNA1E	777	genome.wustl.edu	37	1	181690963	181690963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000721.2	+1	reviewed	p.G676C	1.000	490	0%	471	33.8%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ZNF648	127665	genome.wustl.edu	37	1	182026425	182026425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001009992.1	-1	provisional	p.E241K	0.000	31	0%	46	32.6%	0	-	benign(0.005)	tolerated(0.14)	neutral(0.249)	NULL
PRG4	10216	genome.wustl.edu	37	1	186276213	186276213	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005807.3	+1	reviewed	p.T454	0.000	66	0%	150	34.7%	0	-	-	-	-	NULL
CNTN2	6900	genome.wustl.edu	37	1	205031627	205031627	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005076.2	+1	reviewed	p.S390	0.000	100	0%	132	24.2%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
PM20D1	148811	genome.wustl.edu	37	1	205813294	205813294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_152491.4	-1	validated	p.V210I	0.363	125	0%	167	59.3%	0	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMPfam_Peptidase_M20,superfamily_Zn-dependent exopeptidases
PTPN14	5784	genome.wustl.edu	37	1	214557049	214557051	+	In_Frame_Del	DEL	CCT	CCT	-	rs143136196	by1000genomes	TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005401.4	-1	reviewed	p.E716in_frame_del	0.182:0.503:0.995	-	-	-	-	-	-	-	-	-	NULL
KCTD3	51133	genome.wustl.edu	37	1	215747445	215747445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_016121.3	+1	validated	p.R56Q	1.000	118	0%	242	36.4%	1	0%	probably_damaging(0.963)	tolerated(0.05)	deleterious(0.751)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
USH2A	7399	genome.wustl.edu	37	1	215955394	215955394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_206933.2	-1	reviewed	p.T3577I	0.003	251	0%	444	30.4%	0	-	benign(0.002)	tolerated(0.19)	neutral(0.050)	superfamily_Fibronectin type III
SDCCAG8	10806	genome.wustl.edu	37	1	243480154	243480154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_006642.2	+1	validated	p.V343F	0.998	297	0%	714	30%	19	10.5%	possibly_damaging(0.502)	tolerated(0.21)	neutral(0.212)	NULL
PUM2	23369	genome.wustl.edu	37	2	20512036	20512038	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_015317.1	-1	provisional	p.P103in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MCFD2	90411	genome.wustl.edu	37	2	47135063	47135063	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_139279.4	-1	reviewed	p.A65	0.645	240	0%	211	13.7%	23	30.4%	-	-	-	superfamily_EF-hand
RAB11FIP5	26056	genome.wustl.edu	37	2	73302815	73302815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_015470.2	-1	validated	p.H599R	1.000	150	0%	89	41.6%	5	20%	probably_damaging(0.98)	tolerated(0.07)	deleterious(0.743)	NULL
C2orf65	130951	genome.wustl.edu	37	2	74785965	74785965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_138804.3	-1	predicted	p.V491M	0.991	433	0%	156	39.7%	15	33.3%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
RNF103	7844	genome.wustl.edu	37	2	86831826	86831826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005667.2	-1	reviewed	p.T400A	1.000	352	0%	519	41.4%	20	60%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SULT1C3	442038	genome.wustl.edu	37	2	108875465	108875486	+	Frame_Shift_Del	DEL	AAACTTGGTCAGGTGATGTTAT	AAACTTGGTCAGGTGATGTTAT	-	rs72322214	byCluster	TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	AAACTTGGTCAGGTGATGTTAT	AAACTTGGTCAGGTGATGTTAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000376700	+1	known	p.W224fs	0.420:0.382:0.018:0.002:0.000:0.000:0.001:0.000:0.000:0.000:0.002:0.395:0.396:0.268:0.312:0.255:0.004:0.004:0.004:0.002:0.004:0.025	-	-	-	-	-	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
LIMS2	55679	genome.wustl.edu	37	2	128399619	128399619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000426981	-1	known	p.A30T	1.000	14	0.000	6	0.667	3	100%	benign(0.012)	tolerated(0.44)	neutral(0.013)	HMMPfam_LIM,HMMSmart_SM00132
ABCB11	8647	genome.wustl.edu	37	2	169853172	169853172	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_003742.2	-1	reviewed	p.V150	0.000	247	0%	338	45.9%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
PRKRA	8575	genome.wustl.edu	37	2	179312281	179312282	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_003690.4	-1	reviewed	p.H89fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
TWIST2	117581	genome.wustl.edu	37	2	239757083	239757083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_057179.1	+1	reviewed	p.R76H	1.000	25	0%	18	44.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
CTNNB1	1499	genome.wustl.edu	37	3	41266125	41266125	+	Missense_Mutation	SNP	C	C	T	rs121913413	byCluster	TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001098209.1	+1	reviewed	p.T41I	1.000	93	0%	154	38.3%	58	46.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MINA	84864	genome.wustl.edu	37	3	97669669	97669669	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001042533.1	-1	validated	p.D283	0.000	111	0%	105	37.1%	10	50%	-	-	-	HMMPfam_Cupin_4,superfamily_Clavaminate synthase-like
NUP210P1	255330	genome.wustl.edu	37	3	126379503	126379503	+	RNA	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	XR_040326.2	+1	model	NULL	1.000	51	0%	22	54.5%	0	-	-	-	-	-
COL6A6	131873	genome.wustl.edu	37	3	130284242	130284242	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001102608.1	+1	provisional	p.R356*	0.948	101	0%	143	46.2%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
SLCO2A1	6578	genome.wustl.edu	37	3	133692561	133692561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005630.2	-1	validated	p.L115F	0.997	217	0%	189	39.7%	22	31.8%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
RNF13	11342	genome.wustl.edu	37	3	149613258	149613258	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_007282.4	+1	reviewed	e4-2	1.000	81	0%	123	51.2%	0	-	-	-	-	-
GPR87	53836	genome.wustl.edu	37	3	151012692	151012692	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_023915.3	-1	validated	p.C114	1.000	353	0%	487	16.8%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SI	6476	genome.wustl.edu	37	3	164741431	164741432	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001041.3	-1	reviewed	p.K1009fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916725	178916725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_006218.2	+1	reviewed	p.R38S	1.000	69	0%	118	45.8%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
ECE2	9718	genome.wustl.edu	37	3	184005670	184005670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_014693.3	+1	validated	p.A555T	0.997	1100	0%	237	38.4%	0	-	benign(0.003)	tolerated(1)	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
EPHB3	2049	genome.wustl.edu	37	3	184290427	184290427	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_004443.3	+1	reviewed	p.V107L	1.000	50	0%	27	48.1%	22	40.9%	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
PDE6B	5158	genome.wustl.edu	37	4	654294	654294	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000283.3	+1	reviewed	p.Y502	0.994	101	0%	31	38.7%	0	-	-	-	-	superfamily_HD-domain/PDEase-like
PTPN13	5783	genome.wustl.edu	37	4	87690982	87690982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_080685.2	+1	reviewed	p.R1522Q	1.000	52	0%	111	11.7%	0	-	possibly_damaging(0.949)	tolerated(0.14)	deleterious(0.643)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
AGXT2L1	64850	genome.wustl.edu	37	4	109681400	109681400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_031279.3	-1	validated	p.Y40C	1.000	439	0%	289	41.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_3,superfamily_PLP-dependent transferases
C4orf29	80167	genome.wustl.edu	37	4	128938542	128938542	+	Silent	SNP	C	C	T	rs145102002	by1000genomes	TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001039717.1	+1	predicted	p.S165	0.489	383	0%	496	45.8%	2	50%	-	-	-	HMMPfam_DUF2048,superfamily_alpha/beta-Hydrolases
ZNF827	152485	genome.wustl.edu	37	4	146686736	146686736	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000511659	-1	known	p.A106V	1.000	133	0%	180	46.7%	3	66.6%	-	-	-	NULL
POU4F2	5458	genome.wustl.edu	37	4	147561402	147561402	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_004575.2	+1	validated	p.T224	1.000	89	0%	35	45.7%	0	-	-	-	-	NULL
SDHA	6389	genome.wustl.edu	37	5	235382	235382	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_004168.2	+1	reviewed	p.T396	1.000	82	0%	83	51.8%	152	40.7%	-	-	-	HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain,superfamily_Succinate dehydrogenase/fumarate reductase flavoprotein catalytic domain
SDHA	6389	genome.wustl.edu	37	5	251216	251216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_004168.2	+1	reviewed	p.R554Q	1.000	72	0%	135	13.3%	153	9.1%	possibly_damaging(0.932)	deleterious(0.03)	deleterious(0.743)	HMMPfam_Succ_DH_flav_C,superfamily_Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
CDH18	1016	genome.wustl.edu	37	5	19483549	19483549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_004934.3	-1	reviewed	p.S581R	1.000	190	0%	198	41.4%	0	-	benign(0.277)	deleterious(0)	deleterious(0.474)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SPEF2	79925	genome.wustl.edu	37	5	35753787	35753787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_024867.3	+1	validated	p.R1131L	0.984	130	0%	237	50.2%	3	33.3%	probably_damaging(0.998)	tolerated(0.22)	deleterious(0.516)	NULL
NNT	23530	genome.wustl.edu	37	5	43645559	43645559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_012343.3	+1	reviewed	p.A464V	0.996	89	0%	160	45%	5	60%	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
PPIP5K2	23262	genome.wustl.edu	37	5	102518985	102518985	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_015216.2	+1	provisional	p.L991	1.000	100	0%	250	37.6%	0	-	-	-	-	NULL
WDR36	134430	genome.wustl.edu	37	5	110461365	110461365	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_139281.2	+1	reviewed	p.R860*	1.000	188	0%	424	13%	3	0%	-	-	-	HMMPfam_Utp21
HSD17B4	3295	genome.wustl.edu	37	5	118837772	118837772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000414.2	+1	reviewed	p.P416S	1.000	345	0%	681	41.3%	17	29.4%	benign(0.001)	tolerated(0.09)	neutral(0.296)	superfamily_SSF54637
FBN2	2201	genome.wustl.edu	37	5	127673778	127673778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001999.3	-1	reviewed	p.R1170M	1.000	129	0%	132	15.9%	2	0%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
PCDHA7	56141	genome.wustl.edu	37	5	140216158	140216158	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_018910.2	+1	reviewed	p.G730	0.061	127	0%	86	39.5%	0	-	-	-	-	NULL
PCDHGB2	56103	genome.wustl.edu	37	5	140741197	140741197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_018923.2	+1	reviewed	p.R499W	0.000	39	0%	20	75%	0	-	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140755560	140755560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_018919.2	+1	reviewed	p.A637V	0.061	46	0%	30	43.3%	0	-	benign(0.021)	deleterious(0.05)	neutral(0.346)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
GPR151	134391	genome.wustl.edu	37	5	145895093	145895093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_194251.2	-1	provisional	p.A195V	1.000	141	0%	142	44.4%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_7tm_1,superfamily_SSF81321
RARS	5917	genome.wustl.edu	37	5	167937621	167937621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002887.3	+1	reviewed	p.R461H	1.000	73	0%	168	48.8%	68	48.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase
MAK	4117	genome.wustl.edu	37	6	10830784	10830784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005906.3	-1	reviewed	p.K33R	1.000	565	0%	405	48.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
ALDH5A1	7915	genome.wustl.edu	37	6	24503568	24503568	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_170740.1	+1	reviewed	p.R172	0.906	138	0%	213	47.9%	4	25%	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
HIST1H4C	8364	genome.wustl.edu	37	6	26104307	26104307	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_003542.3	+1	reviewed	p.V44	0.998	122	0%	177	49.7%	1	0%	-	-	-	HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold
HIST1H4J	8363	genome.wustl.edu	37	6	27792005	27792005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_021968.3	+1	reviewed	p.I35V	1.000	202	0%	145	15.9%	24	37.5%	benign(0.233)	deleterious(0)	neutral(0.468)	HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold
KCNK16	83795	genome.wustl.edu	37	6	39284067	39284067	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001135106.1	-1	reviewed	p.L271	0.000	23	0%	11	54.5%	0	-	-	-	-	NULL
KCNK16	83795	genome.wustl.edu	37	6	39284090	39284090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_032115.3	-1	reviewed	p.L264F	1.000	34	0%	16	56.2%	0	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
CUL9	23113	genome.wustl.edu	37	6	43152394	43152394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_015089.2	+1	validated	p.E116K	1.000	115	0%	61	16.4%	3	0%	unknown(0)	tolerated(0.61)	-	NULL
GPR116	221395	genome.wustl.edu	37	6	46836765	46836765	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001098518.1	-1	validated	p.C492	0.999	283	0%	537	37.2%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
TRAM2	9697	genome.wustl.edu	37	6	52369526	52369526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_012288.3	-1	reviewed	p.A301V	0.973	68	0%	50	52%	1	0%	benign(0)	tolerated(1)	-	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
MDN1	23195	genome.wustl.edu	37	6	90442335	90442335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_014611.1	-1	provisional	p.S1628F	1.000	502	0%	476	10.5%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	superfamily_P-loop containing nucleoside triphosphate hydrolases
FIG4	9896	genome.wustl.edu	37	6	110112614	110112614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_014845.5	+1	reviewed	p.R739Q	1.000	28	0%	38	42.1%	36	41.6%	probably_damaging(0.976)	tolerated(0.19)	neutral(0.467)	NULL
LOC728666	728666	genome.wustl.edu	37	6	126965050	126965050	+	RNA	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	XR_015645.3	+1	model	NULL	1.000	302	0%	252	39.3%	13	0%	-	-	-	-
ENPP3	5169	genome.wustl.edu	37	6	132061441	132061441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005021.3	+1	reviewed	p.T793I	0.555	263	0%	325	44%	141	47.5%	possibly_damaging(0.589)	tolerated(0.06)	deleterious(0.526)	HMMSmart_NUC,superfamily_SSF54060
MRPL18	29074	genome.wustl.edu	37	6	160218477	160218477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_014161.3	+1	reviewed	p.A133V	0.664	227	0%	196	49.5%	206	36.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Translational machinery components
HOXA6	3203	genome.wustl.edu	37	7	27185408	27185408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_024014.2	-1	reviewed	p.A191T	1.000	462	0%	262	12.2%	0	-	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
CHN2	1124	genome.wustl.edu	37	7	29539651	29539651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_004067.2	+1	reviewed	p.A303V	0.983	174	0.6%	158	48.1%	0	-	benign(0.045)	tolerated(0.14)	neutral(0.252)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
HECW1	23072	genome.wustl.edu	37	7	43484440	43484440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_015052.3	+1	validated	p.R557W	0.903	77	0%	19	52.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADCY1	107	genome.wustl.edu	37	7	45662260	45662260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_021116.2	+1	reviewed	p.T313M	1.000	118	0%	234	46.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
IGFBP3	3486	genome.wustl.edu	37	7	45956827	45956827	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000417621	-1	known	p.A67T	0.991	193	0%	228	14.9%	116	1.7%	-	-	-	superfamily_Thyroglobulin type-1 domain
CROT	54677	genome.wustl.edu	37	7	86991071	86991071	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001143935.1	+1	reviewed	p.G178	0.992	71	0%	128	46.1%	0	-	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CUX1	1523	genome.wustl.edu	37	7	101848402	101848402	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_181552.2	+1	reviewed	p.S1028T	0.998	308	0%	174	41.4%	3	100%	benign(0.215)	tolerated(0.45)	neutral(0.033)	NULL
RELN	5649	genome.wustl.edu	37	7	103292125	103292125	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005045.3	-1	reviewed	p.S625	1.000	91	0%	178	11.2%	0	-	-	-	-	NULL
LAMB4	22798	genome.wustl.edu	37	7	107708605	107708605	+	Splice_Site	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_007356.2	-1	validated	e18-1	1.000	119	0%	226	13.3%	0	-	-	-	-	-
PNPLA8	50640	genome.wustl.edu	37	7	108138020	108138020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_015723.2	-1	provisional	p.G454S	1.000	162	0%	208	40.4%	16	62.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
C7orf60	154743	genome.wustl.edu	37	7	112555379	112555379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_152556.2	-1	validated	p.R95H	1.000	439	0.2%	570	10.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RP1L1	94137	genome.wustl.edu	37	8	10467546	10467546	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_178857.5	-1	validated	p.A1354	0.001	489	0.2%	378	51.6%	0	-	-	-	-	NULL
XKR6	286046	genome.wustl.edu	37	8	10755661	10755661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_173683.3	-1	provisional	p.R576H	1.000	214	0%	206	39.8%	0	-	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	NULL
LONRF1	91694	genome.wustl.edu	37	8	12586681	12586681	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_152271.3	-1	provisional	e9+2	1.000	149	0%	176	10.8%	0	-	-	-	-	-
PIWIL2	55124	genome.wustl.edu	37	8	22147762	22147762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001135721.1	+1	validated	p.G362S	1.000	325	0%	348	40.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PAZ domain
LOXL2	4017	genome.wustl.edu	37	8	23177436	23177436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002318.2	-1	reviewed	p.R478C	1.000	187	0%	145	40.7%	41	14.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor
INTS9	55756	genome.wustl.edu	37	8	28628504	28628504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_018250.3	-1	reviewed	p.L553F	0.999	55	0%	74	10.8%	24	16.6%	possibly_damaging(0.794)	tolerated(0.11)	deleterious(0.570)	NULL
WHSC1L1	54904	genome.wustl.edu	37	8	38205429	38205429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000419340	-1	known	p.S56N	1.000	669	0.1%	903	45.7%	5	20%	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100829917	100829917	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_017890.3	+1	reviewed	p.Y2774	0.999	267	0%	314	39.5%	5	0%	-	-	-	NULL
SLC45A4	57210	genome.wustl.edu	37	8	142231681	142231681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001080431.1	-1	provisional	p.A91V	0.998	34	0%	25	16%	1	0%	benign(0.002)	tolerated(0.47)	neutral(0.011)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
EEF1D	1936	genome.wustl.edu	37	8	144668937	144668937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001130053.1	-1	reviewed	p.E393K	1.000	83	0%	54	38.9%	511	41.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DAPK1	1612	genome.wustl.edu	37	9	90321976	90321976	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_004938.2	+1	reviewed	p.L1330	0.000	66	0%	47	55.3%	37	35.1%	-	-	-	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
FBP1	2203	genome.wustl.edu	37	9	97367854	97367854	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000507.3	-1	reviewed	p.N237I	0.999	173	0%	166	40.4%	7	57.1%	possibly_damaging(0.773)	deleterious(0.01)	deleterious(0.693)	HMMPfam_FBPase,superfamily_Carbohydrate phosphatase
ENSG00000230984	0	genome.wustl.edu	37	9	99672393	99672393	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000418092	+1	known	p.I12	0.641	84	0%	38	50%	0	-	-	-	-	HMMPfam_Prothymosin
GABBR2	9568	genome.wustl.edu	37	9	101125089	101125089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005458.7	-1	reviewed	p.V601M	1.000	136	0%	150	44%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_3
ABCA1	19	genome.wustl.edu	37	9	107594877	107594877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005502.2	-1	reviewed	p.R496Q	1.000	463	0.9%	446	46.6%	1	0%	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
KIF12	113220	genome.wustl.edu	37	9	116859928	116859928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_138424.1	-1	provisional	p.V19I	0.625	208	0.5%	120	48.3%	56	50%	benign(0.033)	tolerated(0.16)	neutral(0.061)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
ST6GALNAC6	30815	genome.wustl.edu	37	9	130658569	130658569	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_013443.3	-1	provisional	p.R23	0.661	263	0%	207	43%	11	27.2%	-	-	-	NULL
GPR107	57720	genome.wustl.edu	37	9	132853250	132853250	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001136557.1	+1	validated	p.T239	0.006	345	0%	442	11.3%	2	0%	-	-	-	HMMPfam_Lung_7-TM_R
ABL1	25	genome.wustl.edu	37	9	133760754	133760754	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_007313.2	+1	reviewed	p.I1046fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_F_actin_bind,HMMSmart_SM00808
PMPCA	23203	genome.wustl.edu	37	9	139306606	139306606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_015160.1	+1	provisional	p.R77C	0.985	362	0%	190	13.2%	18	5.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16
MKX	283078	genome.wustl.edu	37	10	28023578	28023578	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_173576.2	-1	validated	p.P215	1.000	804	0%	454	44.7%	1	100%	-	-	-	NULL
GDF10	2662	genome.wustl.edu	37	10	48429245	48429245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_004962.2	-1	reviewed	p.R214H	0.730	18	0.000	9	0.778	0	-	possibly_damaging(0.679)	tolerated(0.12)	deleterious(0.502)	NULL
ARHGAP22	58504	genome.wustl.edu	37	10	49667779	49667779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_021226.2	-1	validated	p.V203M	1.000	40	0%	27	48.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
LIPF	8513	genome.wustl.edu	37	10	90438299	90438299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_004190.2	+1	reviewed	p.L353P	0.000	377	0%	462	29.4%	0	-	benign(0.028)	tolerated(0.22)	neutral(0.044)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
POLL	27343	genome.wustl.edu	37	10	103340077	103340077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_013274.3	-1	reviewed	p.L431F	1.000	61	0%	26	53.8%	44	36.3%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_POLXc,PatternScan_DNA_POLYMERASE_X,superfamily_SSF81301
SORCS1	114815	genome.wustl.edu	37	10	108366924	108366924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001013031.1	-1	reviewed	p.Q1055H	1.000	297	0%	265	48.3%	0	-	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	NULL
ACSL5	51703	genome.wustl.edu	37	10	114168264	114168264	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_016234.3	+1	reviewed	p.H229D	1.000	441	0%	467	41.8%	135	54.8%	benign(0.103)	deleterious(0)	neutral(0.453)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACADSB	36	genome.wustl.edu	37	10	124800068	124800068	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001609.3	+1	reviewed	p.K130N	0.997	280	0%	293	12.3%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like
MKI67	4288	genome.wustl.edu	37	10	129900903	129900903	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002417.4	-1	reviewed	p.S3067	0.000	824	0%	686	40.1%	20	40%	-	-	-	NULL
KNDC1	85442	genome.wustl.edu	37	10	135027528	135027528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_152643.6	+1	validated	p.N1527D	0.738	162	0%	77	10.4%	0	-	benign(0.026)	tolerated(0.33)	neutral(0.025)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
CDHR5	53841	genome.wustl.edu	37	11	624594	624594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_021924.4	-1	reviewed	p.G75E	0.000	48	0%	19	47.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112
TALDO1	6888	genome.wustl.edu	37	11	763825	763825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_006755.1	+1	reviewed	p.R239H	1.000	130	0%	85	48.2%	329	47.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transaldolase,superfamily_SSF51569
MUC5B	727897	genome.wustl.edu	37	11	1262627	1262627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002458.1	+1	validated	p.R1509Q	0.000	194	0.5%	42	47.6%	1	0%	benign(0.287)	-	-	NULL
OR52K2	119774	genome.wustl.edu	37	11	4471401	4471401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001005172.2	+1	validated	p.L278I	0.001	1273	0%	2293	42.9%	0	-	benign(0.004)	tolerated(0.24)	neutral(0.037)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51E1	143503	genome.wustl.edu	37	11	4673853	4673853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_152430.3	+1	validated	p.P33T	0.976	1158	0%	1295	44.2%	2	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_Family A G protein-coupled receptor-like
OR52E2	119678	genome.wustl.edu	37	11	5080155	5080155	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001005164.2	-1	validated	p.R235*	0.125	286	0%	320	12.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DNHD1	144132	genome.wustl.edu	37	11	6540895	6540895	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_173589.3	+1	validated	p.I486	0.002	180	0%	164	11%	3	0%	-	-	-	NULL
ZBED5	58486	genome.wustl.edu	37	11	10875745	10875745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001143667.1	-1	reviewed	p.R250C	0.997	278	0%	384	45.3%	49	48.9%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
MRGPRX3	117195	genome.wustl.edu	37	11	18158872	18158872	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_054031.3	+1	reviewed	p.A41	0.993	252	0%	293	12.3%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
DCDC1	341019	genome.wustl.edu	37	11	31349795	31349795	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_181807.2	-1	validated	p.E11	0.001	213	0%	368	12%	0	-	-	-	-	NULL
LRP4	4038	genome.wustl.edu	37	11	46898348	46898348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002334.3	-1	reviewed	p.R1104M	1.000	156	0%	143	39.9%	64	59.3%	benign(0.257)	tolerated(0.11)	neutral(0.298)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
ARFGAP2	84364	genome.wustl.edu	37	11	47193288	47193288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_032389.3	-1	provisional	p.R246W	1.000	149	0%	60	36.7%	13	23%	unknown(0)	deleterious(0.01)	-	NULL
OR4C3	256144	genome.wustl.edu	37	11	48347429	48347429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001004702.1	+1	provisional	p.T313A	0.998	383	0%	680	33.5%	0	-	possibly_damaging(0.865)	deleterious(0.03)	deleterious(0.700)	superfamily_Family A G protein-coupled receptor-like
PLCB3	5331	genome.wustl.edu	37	11	64022489	64022489	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000932.2	+1	reviewed	p.A122	0.033	42	0%	19	57.9%	6	0%	-	-	-	NULL
ATG2A	23130	genome.wustl.edu	37	11	64675055	64675055	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000418259	-1	known	p.R665W	0.000	12	0%	11	72.7%	1	100%	-	-	-	NULL
PC	5091	genome.wustl.edu	37	11	66619964	66619964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000920.3	-1	reviewed	p.A591T	0.704	73	0%	29	34.5%	5	20%	possibly_damaging(0.641)	deleterious(0)	deleterious(0.669)	HMMPfam_HMGL-like,superfamily_SSF51569
CTTN	2017	genome.wustl.edu	37	11	70275184	70275184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005231.3	+1	reviewed	p.A352V	0.993	202	0%	132	42.4%	100	31%	possibly_damaging(0.848)	deleterious(0.04)	deleterious(0.674)	NULL
INPPL1	3636	genome.wustl.edu	37	11	71948292	71948292	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001567.3	+1	reviewed	p.S1003fs	1.000	-	-	-	-	-	-	-	-	-	NULL
LOC220077	220077	genome.wustl.edu	37	11	71961307	71961307	+	RNA	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	XR_017002.2	-1	model	NULL	0.992	26	0%	33	30.3%	0	-	-	-	-	-
PGR	5241	genome.wustl.edu	37	11	100962560	100962560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000926.4	-1	reviewed	p.K613E	1.000	559	0%	914	42.8%	6	100%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
NPAT	4863	genome.wustl.edu	37	11	108040737	108040737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002519.2	-1	validated	p.P940H	1.000	313	0%	443	42.4%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EXPH5	23086	genome.wustl.edu	37	11	108380885	108380885	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_015065.2	-1	validated	p.L1783	0.001	94	0%	122	48.4%	5	40%	-	-	-	NULL
TMPRSS5	80975	genome.wustl.edu	37	11	113563820	113563820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_030770.2	-1	reviewed	p.R313G	0.998	67	0%	76	42.1%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ZBTB16	7704	genome.wustl.edu	37	11	113934758	113934758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001018011.1	+1	reviewed	p.M246V	1.000	34	0.000	9	0.444	0	-	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	NULL
CEP164	22897	genome.wustl.edu	37	11	117282596	117282596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_014956.4	+1	validated	p.R1417W	0.865	83	0%	77	45.5%	18	27.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CBL	867	genome.wustl.edu	37	11	119149368	119149368	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005188.2	+1	reviewed	p.D459V	1.000	236	0%	284	37%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ROBO4	54538	genome.wustl.edu	37	11	124766420	124766420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_019055.5	-1	validated	p.G183R	0.215	77	0%	64	50%	3	0%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PRDM10	56980	genome.wustl.edu	37	11	129780429	129780431	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_020228.2	-1	reviewed	p.Q1039in_frame_del	0.107:0.998:1.000	-	-	-	-	-	-	-	-	-	NULL
KDM5A	5927	genome.wustl.edu	37	12	402268	402268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001042603.1	-1	reviewed	p.R1508Q	1.000	425	0%	514	10.7%	3	0%	probably_damaging(0.994)	tolerated(0.1)	deleterious(0.738)	NULL
KCNA6	3742	genome.wustl.edu	37	12	4919242	4919242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002235.3	+1	reviewed	p.P12L	0.805	11	0.000	9	0.556	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
KCNA1	3736	genome.wustl.edu	37	12	5021955	5021955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000217.2	+1	reviewed	p.V471I	1.000	159	0%	101	43.6%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
A2M	2	genome.wustl.edu	37	12	9264798	9264798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000014.4	-1	reviewed	p.R147H	1.000	204	0%	241	36.9%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_A2M_N
SLC11A2	4891	genome.wustl.edu	37	12	51384628	51384628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000617.2	-1	reviewed	p.V509L	1.000	308	0%	303	41.6%	64	53.1%	benign(0.011)	tolerated(0.45)	neutral(0.013)	NULL
NCKAP1L	3071	genome.wustl.edu	37	12	54930808	54930808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005337.4	+1	reviewed	p.I1052V	1.000	478	0.2%	545	46.8%	6	0%	benign(0.137)	tolerated(0.14)	neutral(0.261)	HMMPfam_Nckap1
GLS2	27165	genome.wustl.edu	37	12	56873664	56873664	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_013267.2	-1	reviewed	p.Q102*	1.000	189	0%	126	46.8%	1	0%	-	-	-	NULL
ACSS3	79611	genome.wustl.edu	37	12	81545698	81545698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_024560.2	+1	validated	p.G333R	1.000	385	0%	932	42.2%	8	62.5%	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ANKRD13A	88455	genome.wustl.edu	37	12	110456207	110456207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_033121.1	+1	validated	p.A153V	1.000	433	0.2%	374	44.7%	2	50%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
GCN1L1	10985	genome.wustl.edu	37	12	120613991	120613991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_006836.1	-1	validated	p.L290F	1.000	214	0%	181	47%	4	50%	benign(0.418)	tolerated(0.13)	neutral(0.388)	superfamily_ARM repeat
HCAR2	338442	genome.wustl.edu	37	12	123187074	123187074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_177551.3	-1	validated	p.R253C	0.024	274	0%	231	38.5%	0	-	possibly_damaging(0.912)	tolerated(0.17)	neutral(0.422)	HMMPfam_7tm_1,superfamily_SSF81321
CCDC62	84660	genome.wustl.edu	37	12	123285675	123285675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_201435.3	+1	validated	p.D328Y	1.000	144	0%	163	39.9%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
AACS	65985	genome.wustl.edu	37	12	125570874	125570874	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_023928.3	+1	validated	e4-2	1.000	568	0%	699	37.6%	0	-	-	-	-	-
RIMBP2	23504	genome.wustl.edu	37	12	130926531	130926531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_015347.4	-1	validated	p.Y439H	1.000	56	0%	35	68.6%	0	-	probably_damaging(0.996)	tolerated(0.5)	deleterious(0.472)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
OR10G3	26533	genome.wustl.edu	37	14	22038134	22038134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001005465.1	-1	validated	p.V248M	0.773	225	0%	113	15.9%	0	-	benign(0.043)	tolerated(0.05)	neutral(0.348)	HMMPfam_7tm_1,superfamily_SSF81321
MYH6	4624	genome.wustl.edu	37	14	23854149	23854151	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002471.3	-1	validated	p.E1755in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Myosin_tail_1
JPH4	84502	genome.wustl.edu	37	14	24040430	24040430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_032452.2	-1	reviewed	p.A504T	0.051	139	0%	62	19.4%	0	-	benign(0.164)	tolerated(0.43)	neutral(0.028)	NULL
DACT1	51339	genome.wustl.edu	37	14	59113247	59113247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_016651.5	+1	validated	p.G636C	0.000	6	0.000	19	0.526	1	100%	possibly_damaging(0.781)	tolerated(0.06)	deleterious(0.615)	NULL
MAX	4149	genome.wustl.edu	37	14	65560514	65560514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002382.3	-1	reviewed	p.H28R	1.000	422	0%	530	40.8%	32	46.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain
PAPLN	89932	genome.wustl.edu	37	14	73739249	73739249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000381166	+1	known	p.A1104T	1.000	322	0%	131	40.5%	3	66.6%	unknown(0)	-	-	NULL
VRTN	55237	genome.wustl.edu	37	14	74824114	74824114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_018228.2	+1	validated	p.R210C	0.837	113	1.8%	118	43.2%	0	-	benign(0.007)	tolerated(0.21)	neutral(0.044)	NULL
ANGEL1	23357	genome.wustl.edu	37	14	77269819	77269819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_015305.3	-1	validated	p.R505C	0.998	362	0%	92	18.5%	11	0%	possibly_damaging(0.914)	tolerated(0.05)	deleterious(0.712)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
AHSA1	10598	genome.wustl.edu	37	14	77935521	77935521	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_012111.2	+1	validated	p.R316*	0.076	276	0%	170	39.4%	590	38.3%	-	-	-	HMMPfam_AHSA1,superfamily_Bet v1-like
CYP46A1	10858	genome.wustl.edu	37	14	100191774	100191774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_006668.1	+1	reviewed	p.P408L	0.956	148	0%	99	10.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
TDRD9	122402	genome.wustl.edu	37	14	104506669	104506669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_153046.2	+1	validated	p.E1285K	0.933	178	0%	345	42.3%	0	-	benign(0.015)	tolerated(0.88)	neutral(0.001)	NULL
PACS2	23241	genome.wustl.edu	37	14	105849172	105849172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001100913.1	+1	validated	p.T516M	1.000	30	0%	19	42.1%	55	29%	probably_damaging(0.988)	tolerated(0.12)	deleterious(0.698)	HMMPfam_Pacs-1
IGHV1-45	28466	genome.wustl.edu	37	14	106962945	106962945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000390621	-1	known	p.Y113H	1.000	251	0%	329	44.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
TRPM1	4308	genome.wustl.edu	37	15	31329970	31329970	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002420.4	-1	reviewed	p.G817*	1.000	454	0%	617	42.9%	0	-	-	-	-	NULL
SPG11	80208	genome.wustl.edu	37	15	44903051	44903051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_025137.3	-1	reviewed	p.G1093V	1.000	197	0%	225	43.1%	5	80%	probably_damaging(0.971)	tolerated(0.36)	neutral(0.433)	NULL
SLTM	79811	genome.wustl.edu	37	15	59186698	59186699	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_024755.2	-1	validated	p.E437fs	0.822:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ANKDD1A	348094	genome.wustl.edu	37	15	65208032	65208032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_182703.3	+1	validated	p.R24H	0.047	126	0%	71	52.1%	0	-	probably_damaging(0.973)	tolerated(0.13)	deleterious(0.667)	HMMPfam_Ank,superfamily_ANK
DPP8	54878	genome.wustl.edu	37	15	65756154	65756154	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_197960.2	-1	reviewed	p.D655V	1.000	207	0%	175	12.6%	2	0%	benign(0.382)	deleterious(0.02)	deleterious(0.505)	superfamily_alpha/beta-Hydrolases
IQCH	64799	genome.wustl.edu	37	15	67692530	67692530	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001031715.2	+1	validated	p.R662	0.999	328	0%	320	42.2%	0	-	-	-	-	NULL
CSK	1445	genome.wustl.edu	37	15	75094108	75094108	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001127190.1	+1	validated	p.V320	1.000	74	0%	48	52.1%	117	42.7%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
AP3B2	8120	genome.wustl.edu	37	15	83332568	83332568	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_004644.3	-1	validated	p.S788	0.129	190	0%	150	48.7%	0	-	-	-	-	NULL
LRRK1	79705	genome.wustl.edu	37	15	101606847	101606847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_024652.3	+1	validated	p.R1924H	0.475	130	0%	155	47.7%	5	20%	benign(0.057)	tolerated(0.26)	neutral(0.038)	NULL
NTHL1	4913	genome.wustl.edu	37	16	2096345	2096345	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002528.5	-1	reviewed	p.P54	0.000	40	0%	17	23.5%	39	53.8%	-	-	-	NULL
PPL	5493	genome.wustl.edu	37	16	4934330	4934330	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002705.4	-1	reviewed	p.T1442	0.959	39	0%	19	42.1%	9	11.1%	-	-	-	NULL
USP31	57478	genome.wustl.edu	37	16	23085182	23085183	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_020718.3	-1	validated	p.V732fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
HIRIP3	8479	genome.wustl.edu	37	16	30006663	30006663	+	Splice_Site	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_003609.2	-1	reviewed	e2+1	1.000	55	0%	29	41.4%	0	-	-	-	-	-
HIRIP3	8479	genome.wustl.edu	37	16	30006712	30006714	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_003609.2	-1	reviewed	p.E46in_frame_del	1.000:1.000:0.998	-	-	-	-	-	-	-	-	-	NULL
BRD7	29117	genome.wustl.edu	37	16	50368677	50368678	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_013263.3	-1	validated	p.D277fs	0.342:0.079	-	-	-	-	-	-	-	-	-	NULL
CTCF	10664	genome.wustl.edu	37	16	67655479	67655479	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_006565.2	+1	reviewed	p.R448*	1.000	578	0.3%	618	42.1%	16	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NUTF2	10204	genome.wustl.edu	37	16	67902442	67902442	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005796.1	+1	reviewed	p.A70	0.225	343	0.3%	228	44.3%	639	46.3%	-	-	-	HMMPfam_NTF2,superfamily_NTF2-like
ENSG00000205152	0	genome.wustl.edu	37	16	70268080	70268080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000378955	-1	known	p.N137D	1.000	68	1.5%	98	26.5%	0	-	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70841553	70841553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_032821.2	-1	validated	p.S5098I	0.113	525	0%	665	42.4%	12	0%	benign(0.045)	deleterious(0.04)	neutral(0.351)	NULL
PKD1L3	342372	genome.wustl.edu	37	16	71967402	71967402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000335106	-1	known	p.S1614N	0.998	72	0%	115	34.8%	0	-	-	-	-	HMMPfam_Ion_trans
YWHAE	7531	genome.wustl.edu	37	17	1265220	1265220	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_006761.4	-1	reviewed	p.E116V	1.000	198	0%	265	49.1%	232	52.5%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_14-3-3,HMMSmart_SM00101,superfamily_14-3-3 protein
ZBTB4	57659	genome.wustl.edu	37	17	7369289	7369289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001128833.1	-1	validated	p.P278T	1.000	19	0%	18	27.8%	1	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_C2H2 and C2HC zinc fingers
MYH10	4628	genome.wustl.edu	37	17	8383618	8383618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005964.1	-1	validated	p.E1772K	1.000	129	0.8%	100	44%	41	39%	possibly_damaging(0.764)	deleterious(0.01)	deleterious(0.689)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
DNAH9	1770	genome.wustl.edu	37	17	11607704	11607704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001372.3	+1	reviewed	p.I1779T	1.000	274	0.4%	285	18.9%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZNF286B	729288	genome.wustl.edu	37	17	18566166	18566166	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001145045.1	-1	validated	p.F218Y	0.475	317	0%	244	44.7%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
BLMH	642	genome.wustl.edu	37	17	28576086	28576086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000386.2	-1	reviewed	p.Q439H	1.000	393	0%	414	45.7%	79	41.7%	possibly_damaging(0.775)	deleterious(0.02)	deleterious(0.671)	HMMPfam_Peptidase_C1_2,superfamily_Cysteine proteinases
LOC100287863	100287863	genome.wustl.edu	37	17	37331737	37331737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	XM_002343513.1	+1	model	p.R17Q	0.329	78	0%	31	48.4%	0	-	-	-	-	NULL
KRT36	8689	genome.wustl.edu	37	17	39646047	39646047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_003771.4	-1	reviewed	p.G24S	0.002	21	0%	20	55%	0	-	benign(0.002)	tolerated(0.37)	neutral(0.019)	NULL
PRKCA	5578	genome.wustl.edu	37	17	64685104	64685104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_002737.2	+1	reviewed	p.Y286C	1.000	263	0%	288	42.4%	6	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FAM20A	54757	genome.wustl.edu	37	17	66538916	66538916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_017565.3	-1	validated	p.G283W	1.000	487	0%	528	41.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH17	8632	genome.wustl.edu	37	17	76525662	76525662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000389840	-1	known	p.K1133N	1.000	369	0%	236	44.5%	0	-	benign(0.126)	tolerated(0.28)	neutral(0.042)	superfamily_Spectrin repeat
ENSG00000215726	0	genome.wustl.edu	37	18	697216	697216	+	RNA	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000508278	+1	novel	NULL	0.000	181	0%	115	33.9%	0	-	-	-	-	-
MYOM1	8736	genome.wustl.edu	37	18	3155005	3155005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_003803.3	-1	reviewed	p.I528T	1.000	159	0%	390	42.3%	0	-	benign(0.146)	deleterious(0.01)	neutral(0.418)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NOL4	8715	genome.wustl.edu	37	18	31463273	31463273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_003787.3	-1	validated	p.Y553C	1.000	580	0.2%	392	43.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ALPK2	115701	genome.wustl.edu	37	18	56203687	56203687	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_052947.3	-1	validated	p.S1244	0.000	38	0%	52	13.5%	0	-	-	-	-	NULL
ALPK2	115701	genome.wustl.edu	37	18	56246440	56246440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_052947.3	-1	validated	p.K523fs	0.000	-	-	-	-	-	-	-	-	-	NULL
MC4R	4160	genome.wustl.edu	37	18	58038877	58038877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005912.2	-1	reviewed	p.R236C	1.000	146	0%	117	49.6%	0	-	benign(0.015)	deleterious(0.02)	neutral(0.384)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CDH19	28513	genome.wustl.edu	37	18	64239366	64239366	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_021153.2	-1	reviewed	p.S26T	0.000	195	0%	317	47.9%	0	-	benign(0.383)	tolerated(0.5)	neutral(0.133)	NULL
CCDC102B	79839	genome.wustl.edu	37	18	66504202	66504202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001093729.1	+1	validated	p.D68N	1.000	89	0%	151	45%	0	-	benign(0.026)	tolerated(0.12)	neutral(0.262)	NULL
MUM1	84939	genome.wustl.edu	37	19	1371014	1371014	+	Silent	SNP	C	C	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_032853.3	+1	validated	p.A642	0.000	55	0%	29	48.3%	66	33.3%	-	-	-	NULL
IZUMO4	113177	genome.wustl.edu	37	19	2099263	2099263	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001039846.1	+1	validated	p.S206	0.001	20	0%	23	56.5%	17	58.8%	-	-	-	NULL
ZNF555	148254	genome.wustl.edu	37	19	2853709	2853709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_152791.4	+1	validated	p.S549L	0.008	335	0%	160	45%	10	40%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DENND1C	79958	genome.wustl.edu	37	19	6479010	6479010	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_024898.2	-1	validated	p.G78	0.875	110	0%	68	38.2%	1	0%	-	-	-	HMMPfam_uDENN,HMMSmart_uDENN
ILF3	3609	genome.wustl.edu	37	19	10793886	10793886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_017620.2	+1	reviewed	p.Y545C	0.999	40	0%	31	41.9%	176	47.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
CC2D1A	54862	genome.wustl.edu	37	19	14034176	14034176	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_017721.4	+1	reviewed	p.F558I	1.000	164	0%	44	50%	33	39.3%	benign(0.132)	deleterious(0)	neutral(0.456)	NULL
ZNF333	84449	genome.wustl.edu	37	19	14829708	14829708	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_032433.2	+1	validated	p.V523	0.008	483	0%	357	17.6%	18	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
OR10H5	284433	genome.wustl.edu	37	19	15904883	15904883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001004466.1	+1	provisional	p.V9M	0.003	1672	0%	1300	14.4%	0	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	superfamily_SSF81321
SUGP1	57794	genome.wustl.edu	37	19	19387471	19387471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_172231.2	-1	validated	p.R642W	0.689	95	0%	79	38%	183	44.2%	unknown(0)	deleterious(0)	-	NULL
GATAD2A	54815	genome.wustl.edu	37	19	19605152	19605152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_017660.3	+1	provisional	p.R195Q	1.000	121	0%	93	46.2%	20	35%	probably_damaging(0.997)	tolerated(0.1)	deleterious(0.752)	NULL
MLL4	9757	genome.wustl.edu	37	19	36228645	36228645	+	Splice_Site	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_014727.1	+1	reviewed	e34+1	1.000	171	0%	87	54%	0	-	-	-	-	-
ZFP82	284406	genome.wustl.edu	37	19	36884781	36884781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_133466.2	-1	provisional	p.R154H	0.001	408	0%	448	42.9%	0	-	benign(0.005)	tolerated(0.64)	neutral(0.003)	superfamily_C2H2 and C2HC zinc fingers
DHDH	27294	genome.wustl.edu	37	19	49437065	49437065	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_014475.3	+1	reviewed	p.H29	1.000	23	0%	12	50%	2	50%	-	-	-	HMMPfam_GFO_IDH_MocA,superfamily_NAD(P)-bd
ZNF468	90333	genome.wustl.edu	37	19	53352445	53352445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001008801.1	-1	validated	p.V13M	0.997	715	0%	738	9.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF347	84671	genome.wustl.edu	37	19	53643668	53643668	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_032584.2	-1	validated	p.L805V	0.002	401	0%	430	44.4%	1	100%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_C2H2 and C2HC zinc fingers
CACNG7	59284	genome.wustl.edu	37	19	54445326	54445326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_031896.3	+1	reviewed	p.R203C	1.000	150	0%	76	48.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP9	338321	genome.wustl.edu	37	19	56244361	56244361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_176820.2	-1	reviewed	p.A279V	0.000	333	0%	302	45.7%	0	-	benign(0.344)	tolerated(0.07)	neutral(0.427)	HMMPfam_NACHT
ZNF549	256051	genome.wustl.edu	37	19	58049460	58049460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_153263.1	+1	provisional	p.C350Y	0.844	230	0%	254	41.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF8	7554	genome.wustl.edu	37	19	58805558	58805558	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_021089.2	+1	validated	p.P128	0.000	147	0%	122	13.9%	6	33.3%	-	-	-	NULL
EBF4	57593	genome.wustl.edu	37	20	2736410	2736410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000449079	+1	known	p.A621V	1.000	12	0%	14	28.6%	5	0%	unknown(0)	tolerated(0.1)	-	NULL
ProSAPiP1	9762	genome.wustl.edu	37	20	3145345	3145345	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_014731.2	-1	validated	p.R593fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Fez1
THBD	7056	genome.wustl.edu	37	20	23028480	23028480	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000361.2	-1	reviewed	p.C554	0.088	31	0%	26	30.8%	4	0%	-	-	-	NULL
MYH7B	57644	genome.wustl.edu	37	20	33584223	33584223	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_020884.3	+1	reviewed	p.L1048	0.968	55	0%	15	66.7%	12	41.6%	-	-	-	superfamily_tRNA-binding arm
SOGA1	140710	genome.wustl.edu	37	20	35434276	35434276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_199181.2	-1	validated	p.D729N	1.000	895	0%	322	45.3%	3	33.3%	benign(0.105)	tolerated(0.24)	neutral(0.045)	NULL
SERINC3	10955	genome.wustl.edu	37	20	43142579	43142579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_006811.2	-1	validated	p.L48M	1.000	421	0%	419	38.7%	11	36.3%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_Serinc
PREX1	57580	genome.wustl.edu	37	20	47351101	47351101	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_020820.3	-1	reviewed	p.T167	0.170	195	0.5%	124	38.7%	1	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
TIAM1	7074	genome.wustl.edu	37	21	32595761	32595761	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_003253.2	-1	validated	p.G652	0.999	111	0%	158	47.5%	0	-	-	-	-	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37620744	37620744	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_005128.2	+1	validated	p.R1626*	0.838	137	0%	103	50.5%	2	0%	-	-	-	NULL
PIWIL3	440822	genome.wustl.edu	37	22	25119106	25119106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001008496.2	-1	validated	p.R792M	0.932	432	0%	413	38.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Piwi,superfamily_RNaseH_fold
CHEK2	11200	genome.wustl.edu	37	22	29130714	29130714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000398017	-1	known	p.V9A	0.000	242	0%	244	36.9%	10	50%	unknown(0)	-	-	NULL
APOL4	80832	genome.wustl.edu	37	22	36587217	36587217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000352371	-1	known	p.S320Y	0.001	93	0%	116	39.7%	12	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_ApoL
APOL4	80832	genome.wustl.edu	37	22	36587860	36587860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000352371	-1	known	p.E106G	0.001	305	0%	348	40.8%	5	100%	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	HMMPfam_ApoL
TRIOBP	11078	genome.wustl.edu	37	22	38130445	38130445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001039141.2	+1	reviewed	p.R1368W	0.001	19	0.000	9	0.667	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40677282	40677282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000454349	+1	known	p.A1205T	1.000	373	0%	384	44%	0	-	benign(0.29)	tolerated(0.34)	neutral(0.112)	NULL
MAPK8IP2	23542	genome.wustl.edu	37	22	51041769	51041771	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000329492	+1	known	p.E100in_frame_del	0.996:0.991:0.021	-	-	-	-	-	-	-	-	-	NULL
ARSE	415	genome.wustl.edu	37	X	2864057	2864057	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000047.2	-1	reviewed	p.E325*	1.000	544	0%	308	41.6%	5	0%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
RPS6KA3	6197	genome.wustl.edu	37	X	20179840	20179840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_004586.2	-1	reviewed	p.E627D	1.000	189	0%	249	40.6%	5	0%	benign(0)	tolerated(0.53)	neutral(0.007)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ZNF630	57232	genome.wustl.edu	37	X	47918479	47918479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001037735.2	-1	validated	p.R451K	1.000	329	0%	338	40.2%	7	0%	possibly_damaging(0.936)	tolerated(0.31)	neutral(0.409)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MAGED1	9500	genome.wustl.edu	37	X	51641401	51641401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001005333.1	+1	reviewed	p.R643C	1.000	847	0%	648	14.2%	155	9%	unknown(0)	deleterious(0.01)	-	HMMPfam_MAGE
IL2RG	3561	genome.wustl.edu	37	X	70327660	70327660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_000206.2	-1	reviewed	p.P346S	0.981	325	0%	266	45.1%	18	0%	benign(0.023)	deleterious(0.03)	neutral(0.365)	NULL
ZCCHC5	203430	genome.wustl.edu	37	X	77913051	77913051	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_152694.2	-1	reviewed	p.W289*	0.000	139	0%	172	12.2%	0	-	-	-	-	NULL
TBC1D8B	54885	genome.wustl.edu	37	X	106083361	106083361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_017752.2	+1	validated	p.K479N	1.000	446	0%	493	43.2%	2	0%	benign(0.01)	deleterious(0.01)	neutral(0.406)	superfamily_Ypt/Rab-GAP domain of gyp1p
IRS4	8471	genome.wustl.edu	37	X	107977929	107977929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_003604.2	-1	reviewed	p.G549D	0.493	258	0%	154	15.6%	0	-	unknown(0)	deleterious(0)	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123779079	123779079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_014253.3	-1	reviewed	p.I597T	1.000	245	0%	338	40.2%	0	-	possibly_damaging(0.815)	tolerated(0.16)	neutral(0.367)	HMMSmart_EGF,HMMPfam_EGF_2
DCAF12L2	340578	genome.wustl.edu	37	X	125299580	125299580	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001013628.2	-1	reviewed	p.Q110*	1.000	60	0%	54	13%	0	-	-	-	-	superfamily_WD40_like
CCDC160	347475	genome.wustl.edu	37	X	133378949	133378949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_001101357.1	+1	provisional	p.S40I	0.000	86	0%	87	10.3%	2	0%	benign(0.303)	tolerated(0.06)	neutral(0.416)	NULL
FAM122C	159091	genome.wustl.edu	37	X	133988256	133988256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	ENST00000370784	+1	known	p.T193I	0.226	399	0%	351	43.3%	4	0%	unknown(0)	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135455083	135455083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_153834.3	+1	reviewed	p.T2546A	0.026	571	0%	942	43%	0	-	benign(0.001)	tolerated(1)	-	NULL
CD99L2	83692	genome.wustl.edu	37	X	149944656	149944656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GI-01A-11W-A062-09	TCGA-A5-A0GI-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	322fb74a-d3c3-4b28-bc78-f32d4e2f3751	0ca254d3-b2c3-4eb6-b4ac-cdfd88b2cf6c	NM_031462.3	-1	reviewed	p.S216G	1.000	111	0%	79	16.5%	2	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
