Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB8	11194	genome.wustl.edu	37	7	150741305	150741305	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	7	150741305	150741305	G	T	SNP	ABCB8	NM_007188.3	human	genbank	58_37c	+1	reviewed	missense	c.2013	p.W671C	0.995	superfamily_SSF52540	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ANKRD17	26057	genome.wustl.edu	37	4	74124302	74124303	+	In_Frame_Ins	INS	-	-	GGC	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	4	74124302	74124303	-	GGC	INS	ANKRD17	NM_032217.3	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.84_83	p.31in_frame_insP	0.492:0.144	NULL	HMMPfam_MutS_V,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
ATAD2B	54454	genome.wustl.edu	37	2	24092569	24092569	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	2	24092569	24092569	C	A	SNP	ATAD2B	NM_017552.1	human	genbank	58_37c	-1	validated	missense	c.1040	p.R347I	1.000	NULL	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,PatternScan_BROMODOMAIN_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BAZ2A	11176	genome.wustl.edu	37	12	56992725	56992725	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	12	56992725	56992725	C	A	SNP	BAZ2A	NM_013449.3	human	genbank	58_37c	-1	validated	missense	c.5479	p.V1827L	1.000	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_MBD,HMMSmart_SM00391,HMMSmart_SM00249,HMMPfam_DDT,superfamily_FYVE/PHD zinc finger,superfamily_DNA-binding domain,HMMPfam_AT_hook,HMMSmart_SM00384,PatternScan_BROMODOMAIN_1,HMMSmart_SM00571,HMMPfam_PHD	-	no_errors
BIRC6	57448	genome.wustl.edu	37	2	32822992	32822992	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	2	32822992	32822992	G	T	SNP	BIRC6	NM_016252.3	human	genbank	58_37c	+1	reviewed	missense	c.13787	p.S4596I	1.000	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like	HMMPfam_UQ_con,HMMSmart_SM00212,HMMPfam_BIR,HMMSmart_SM00238,superfamily_Galactose-binding domain-like,superfamily_UBC-like,superfamily_Inhibitor of apoptosis (IAP) repeat	-	no_errors
C17orf101	79701	genome.wustl.edu	37	17	80369359	80369359	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	17	80369359	80369359	T	A	SNP	C17orf101	NM_175902.4	human	genbank	58_37c	-1	validated	missense	c.352	p.T118S	1.000	HMMSmart_SM00702	HMMSmart_SM00702	-	no_errors
CAMKK1	84254	genome.wustl.edu	37	17	3776749	3776749	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	17	3776749	3776749	T	G	SNP	CAMKK1	NM_172207.2	human	genbank	58_37c	-1	reviewed	missense	c.1118	p.D373A	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CNOT3	4849	genome.wustl.edu	37	19	54650352	54650352	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	19	54650352	54650352	G	C	SNP	CNOT3	NM_014516.2	human	genbank	58_37c	+1	validated	missense	c.853	p.D285H	1.000	NULL	HMMPfam_Not3,HMMPfam_NOT2_3_5	-	no_errors
DDR2	4921	genome.wustl.edu	37	1	162743378	162743378	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	1	162743378	162743378	G	C	SNP	DDR2	NM_001014796.1	human	genbank	58_37c	+1	reviewed	missense	c.1848	p.K616N	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,PatternScan_PROTEIN_KINASE_TYR,superfamily_Gal_bind_like,superfamily_Kinase_like	-	no_errors
DPY19L3	147991	genome.wustl.edu	37	19	32968544	32968544	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	19	32968544	32968544	G	A	SNP	DPY19L3	NM_207325.2	human	genbank	58_37c	+1	validated	missense	c.1814	p.R605K	1.000	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors
DSPP	1834	genome.wustl.edu	37	4	88535329	88535329	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	4	88535329	88535329	T	A	SNP	DSPP	NM_014208.3	human	genbank	58_37c	+1	reviewed	missense	c.1515	p.S505R	0.998	NULL	NULL	-	no_errors
ENSG00000245321	0	genome.wustl.edu	37	21	44520691	44520691	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	21	44520691	44520691	T	C	SNP	U2AF1	ENST00000475639	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-44520691	NULL	1.000	-	-	-	no_coding_region
FAM169A	26049	genome.wustl.edu	37	5	74077801	74077803	+	In_Frame_Del	DEL	CAT	CAT	-	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	CAT	CAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	5	74077801	74077803	CAT	-	DEL	FAM169A	NM_015566.1	human	genbank	58_37c	-1	validated	in_frame_del	c.1497_1495	p.M499in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors
FAM26D	221301	genome.wustl.edu	37	6	116879271	116879271	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	6	116879271	116879271	T	C	SNP	FAM26D	NM_153036.2	human	genbank	58_37c	+1	validated	missense	c.284	p.L95S	0.033	NULL	NULL	-	no_errors
FAM46A	55603	genome.wustl.edu	37	6	82459981	82459982	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	6	82459981	82459982	TC	-	DEL	FAM46A	NM_017633.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.760_759	p.E253fs	1.000:1.000	HMMPfam_DUF1693	HMMPfam_DUF1693	-	no_errors
FOLH1	2346	genome.wustl.edu	37	11	49221856	49221856	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	11	49221856	49221856	T	C	SNP	FOLH1	NM_004476.1	human	genbank	58_37c	-1	reviewed	missense	c.362	p.N121S	0.998	superfamily_Transferrin receptor ectodomain apical domain	HMMPfam_PA,HMMPfam_TFR_dimer,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_Peptidase_M28,superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases	-	no_errors
GP1BA	2811	genome.wustl.edu	37	17	4837763	4837763	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	17	4837763	4837763	C	T	SNP	GP1BA	NM_000173.5	human	genbank	58_37c	+1	reviewed	silent	c.1825	p.L609	0.984	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
KCNIP2	30819	genome.wustl.edu	37	10	103588945	103588945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	10	103588945	103588945	C	T	SNP	KCNIP2	NM_014591.4	human	genbank	58_37c	-1	reviewed	missense	c.280	p.D94N	1.000	NULL	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
KRTAP4-6	81871	genome.wustl.edu	37	17	39296423	39296423	+	Missense_Mutation	SNP	C	C	T	rs349790	byFrequency;by1000genomes	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	17	39296423	39296423	C	T	SNP	KRTAP4-6	ENST00000345847	human	ensembl	58_37c	-1	known	missense	c.317	p.R106H	0.000	NULL	HMMPfam_Keratin_B2	-	no_errors
LOC100128511	0	genome.wustl.edu	37	10	21462603	21462603	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	10	21462603	21462603	A	G	SNP	LOC100128511	XM_001716027.2	human	genbank	58_37c	+1	model	silent	c.402	p.S134	0.001	NULL	NULL	-	no_errors
LTBP2	4053	genome.wustl.edu	37	14	74975371	74975371	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	14	74975371	74975371	G	A	SNP	LTBP2	NM_000428.2	human	genbank	58_37c	-1	reviewed	silent	c.3588	p.H1196	0.304	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
MUC2	4583	genome.wustl.edu	37	11	1101090	1101090	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	11	1101090	1101090	G	A	SNP	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	missense	c.7477	p.V2493I	0.000	HMMSmart_SM00214,PatternScan_VWFC_1	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
NID1	4811	genome.wustl.edu	37	1	236157078	236157078	+	Silent	SNP	G	G	A	rs151147666	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	1	236157078	236157078	G	A	SNP	NID1	NM_002508.2	human	genbank	58_37c	-1	reviewed	silent	c.2622	p.F874	0.989	HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMSmart_SM00179,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
OBSCN	84033	genome.wustl.edu	37	1	228506585	228506585	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	1	228506585	228506585	T	C	SNP	OBSCN	NM_001098623.1	human	genbank	58_37c	+1	reviewed	missense	c.14132	p.V4711A	0.993	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
OLFML2B	25903	genome.wustl.edu	37	1	161954711	161954711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	1	161954711	161954711	G	A	SNP	OLFML2B	NM_015441.1	human	genbank	58_37c	-1	provisional	missense	c.1534	p.R512W	1.000	HMMPfam_OLF,HMMSmart_SM00284	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors
OR5R1	219479	genome.wustl.edu	37	11	56185039	56185039	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	11	56185039	56185039	C	T	SNP	OR5R1	NM_001004744.1	human	genbank	58_37c	-1	provisional	missense	c.670	p.A224T	0.003	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PEX2	0	genome.wustl.edu	37	8	77895909	77895909	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	8	77895909	77895909	C	T	SNP	PEX2	NM_000318.2	human	genbank	58_37c	-1	reviewed	missense	c.506	p.R169H	1.000	HMMPfam_Pex2_Pex12	HMMSmart_SM00184,HMMPfam_Pex2_Pex12,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
PRKCE	5581	genome.wustl.edu	37	2	46070194	46070194	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	2	46070194	46070194	C	T	SNP	PRKCE	NM_005400.2	human	genbank	58_37c	+1	reviewed	missense	c.404	p.S135L	0.749	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_Cysteine-rich domain	-	no_errors
RPGRIP1	57096	genome.wustl.edu	37	14	21796707	21796707	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	14	21796707	21796707	A	T	SNP	RPGRIP1	NM_020366.3	human	genbank	58_37c	+1	reviewed	missense	c.3020	p.H1007L	1.000	NULL	HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
SMCR8	140775	genome.wustl.edu	37	17	18221324	18221324	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	17	18221324	18221324	G	A	SNP	SMCR8	NM_144775.2	human	genbank	58_37c	+1	validated	missense	c.2221	p.A741T	0.280	NULL	NULL	-	no_errors
SNAI1	6615	genome.wustl.edu	37	20	48604456	48604456	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	20	48604456	48604456	C	T	SNP	SNAI1	NM_005985.2	human	genbank	58_37c	+1	reviewed	missense	c.658	p.R220C	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
SPHK2	56848	genome.wustl.edu	37	19	49129267	49129267	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	19	49129267	49129267	C	T	SNP	SPHK2	NM_020126.3	human	genbank	58_37c	+1	provisional	silent	c.159	p.G53	1.000	NULL	HMMPfam_DAGK_cat,HMMSmart_SM00046	-	no_errors
TFAP2A	7020	genome.wustl.edu	37	6	10410138	10410138	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	6	10410138	10410138	A	G	SNP	TFAP2A	NM_003220.2	human	genbank	58_37c	-1	reviewed	missense	c.476	p.V159A	1.000	NULL	HMMPfam_TF_AP-2	-	no_errors
TRPC1	7220	genome.wustl.edu	37	3	142503607	142503607	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	3	142503607	142503607	G	A	SNP	TRPC1	NM_003304.4	human	genbank	58_37c	+1	validated	missense	c.920	p.G307D	1.000	NULL	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,HMMPfam_TRP_2	-	no_errors
VAV1	7409	genome.wustl.edu	37	19	6833625	6833625	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	19	6833625	6833625	G	A	SNP	VAV1	NM_005428.2	human	genbank	58_37c	+1	reviewed	missense	c.1697	p.R566Q	0.665	HMMPfam_C1_1,superfamily_SSF57889	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_SH2,HMMSmart_SH2,PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_Calponin-homology,superfamily_SSF50729,superfamily_SSF55550,superfamily_SSF57889	-	no_errors
WDR44	54521	genome.wustl.edu	37	X	117540916	117540916	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	X	117540916	117540916	C	T	SNP	WDR44	NM_019045.4	human	genbank	58_37c	+1	reviewed	missense	c.1460	p.A487V	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
YSK4	80122	genome.wustl.edu	37	2	135745195	135745195	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A13F-01A-11D-A12Q-09	TCGA-A7-A13F-10A-01D-A12Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f9ad889c-2135-40e3-97e6-c022d7eb6a92	8060bafc-8b8c-44ba-91ba-8a9035b52f44	2	135745195	135745195	G	C	SNP	YSK4	NM_025052.3	human	genbank	58_37c	-1	validated	missense	c.1247	p.A416G	0.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
