Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA4	0	genome.wustl.edu	37	1	94522223	94522223	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	1	94522223	94522223	G	A	SNP	ABCA4	NM_000350.2	human	genbank	58_37c	-1	reviewed	silent	c.2316	p.L772	1.000	NULL	HMMPfam_ABC_tran,HMMSmart_AAA,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ABCC4	0	genome.wustl.edu	37	13	95830023	95830023	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	13	95830023	95830023	G	A	SNP	ABCC4	NM_005845.3	human	genbank	58_37c	-1	reviewed	silent	c.1665	p.I555	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACTN3	0	genome.wustl.edu	37	11	66319055	66319055	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	11	66319055	66319055	G	A	SNP	ACTN3	NM_001104.1	human	genbank	58_37c	+1	reviewed	missense	c.319	p.V107I	1.000	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	PatternScan_DEHYDRATASE_SER_THR,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_efhand_Ca_insen,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	pseudogene
ALOX15	0	genome.wustl.edu	37	17	4540413	4540413	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	17	4540413	4540413	G	C	SNP	ALOX15	NM_001140.3	human	genbank	58_37c	-1	validated	missense	c.948	p.I316M	1.000	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_2,PatternScan_LIPOXYGENASE_1,superfamily_Lipoxygenase	-	no_errors
AQP12A	0	genome.wustl.edu	37	2	241631392	241631392	+	Missense_Mutation	SNP	C	C	T	rs145322760	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	2	241631392	241631392	C	T	SNP	AQP12A	NM_198998.1	human	genbank	58_37c	+1	provisional	missense	c.62	p.A21V	0.812	superfamily_MIP	PatternScan_MIP,superfamily_MIP	-	no_errors
ASH1L	0	genome.wustl.edu	37	1	155448988	155448988	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	1	155448988	155448988	G	A	SNP	ASH1L	NM_018489.2	human	genbank	58_37c	-1	reviewed	missense	c.3673	p.H1225Y	1.000	NULL	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_SET,HMMSmart_SM00317,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMSmart_SM00570,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00384,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
ATP6V1G3	0	genome.wustl.edu	37	1	198498240	198498240	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	1	198498240	198498240	C	A	SNP	ATP6V1G3	NM_133262.2	human	genbank	58_37c	-1	reviewed	missense	c.154	p.D52Y	0.997	HMMPfam_V-ATPase_G	HMMPfam_V-ATPase_G	-	no_errors
CACYBP	0	genome.wustl.edu	37	1	174977786	174977786	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	1	174977786	174977786	G	A	SNP	CACYBP	NM_014412.2	human	genbank	58_37c	+1	reviewed	silent	c.474	p.V158	0.001	superfamily_HSP20-like chaperones	HMMPfam_SGS,superfamily_HSP20-like chaperones,HMMPfam_Siah-Interact_N,HMMPfam_CS	-	no_errors
CEP120	0	genome.wustl.edu	37	5	122713082	122713082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	5	122713082	122713082	G	A	SNP	CEP120	NM_153223.3	human	genbank	58_37c	-1	reviewed	missense	c.2344	p.R782C	0.722	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
CHN1	0	genome.wustl.edu	37	2	175742762	175742762	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	2	175742762	175742762	C	T	SNP	CHN1	NM_001822.4	human	genbank	58_37c	-1	reviewed	missense	c.355	p.D119N	1.000	HMMPfam_SH2,HMMSmart_SM00252	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_GTPase activation domain GAP,superfamily_SH2 domain,superfamily_Cysteine-rich domain	-	no_errors
COL14A1	0	genome.wustl.edu	37	8	121237326	121237326	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	8	121237326	121237326	G	A	SNP	COL14A1	NM_021110.1	human	genbank	58_37c	+1	validated	splice_site	c.1738-1	e14-1	1.000	-	-	-	no_errors
ENSG00000198804	0	genome.wustl.edu	37	MT	6340	6340	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	MT	6340	6340	C	T	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	missense	c.437	p.T146I	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000198886	0	genome.wustl.edu	37	MT	11724	11724	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	MT	11724	11724	C	T	SNP	ENSG00000198886	ENST00000361381	human	ensembl	58_37c	+1	known	missense	c.965	p.T322M	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000232657	0	genome.wustl.edu	37	4	49110490	49110490	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	4	49110490	49110490	A	G	SNP	ENSG00000232657	ENST00000417204	human	ensembl	58_37c	-1	known	silent	c.12	p.N4	0.000	NULL	NULL	-	no_stop_codon
EPB41L5	0	genome.wustl.edu	37	2	120831738	120831738	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	2	120831738	120831738	C	T	SNP	EPB41L5	NM_020909.3	human	genbank	58_37c	+1	validated	missense	c.391	p.R131C	1.000	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295	HMMPfam_FA,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like	-	no_errors
FAM184A	0	genome.wustl.edu	37	6	119301436	119301436	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	6	119301436	119301436	G	A	SNP	FAM184A	NM_024581.4	human	genbank	58_37c	-1	validated	missense	c.2168	p.T723M	1.000	NULL	NULL	-	no_errors
FAM38A	0	genome.wustl.edu	37	16	88787608	88787610	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	16	88787608	88787610	CTT	-	DEL	FAM38A	ENST00000451779	human	ensembl	58_37c	-1	known	in_frame_del	c.4245_4243	p.K1415in_frame_del	0.920:0.883:0.537	NULL	PatternScan_IG_MHC	-	no_errors
FLJ36000	0	genome.wustl.edu	37	17	21904194	21904194	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	17	21904194	21904194	C	A	SNP	FLJ36000	NR_027084.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.020	-	-	-	no_errors
FLJ42393	0	genome.wustl.edu	37	3	187896882	187896883	+	RNA	INS	-	-	AGAG	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	3	187896882	187896883	-	AGAG	INS	FLJ42393	NR_024413.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29623224	29623224	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	20	29623224	29623224	C	A	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	silent	c.36	p.V12	1.000	HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
GPR22	0	genome.wustl.edu	37	7	107115253	107115253	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	7	107115253	107115253	C	A	SNP	GPR22	NM_005295.2	human	genbank	58_37c	+1	reviewed	missense	c.748	p.Q250K	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
HS3ST5	0	genome.wustl.edu	37	6	114378876	114378876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	6	114378876	114378876	C	T	SNP	HS3ST5	NM_153612.3	human	genbank	58_37c	-1	validated	missense	c.586	p.V196M	1.000	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
IFNG	0	genome.wustl.edu	37	12	68551735	68551735	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	12	68551735	68551735	G	C	SNP	IFNG	NM_000619.2	human	genbank	58_37c	-1	reviewed	missense	c.324	p.N108K	0.000	HMMPfam_IFN-gamma,superfamily_4-helical cytokines	HMMPfam_IFN-gamma,superfamily_4-helical cytokines	-	no_errors
KRT17P1	0	genome.wustl.edu	37	17	16748911	16748913	+	In_Frame_Del	DEL	GCT	GCT	-	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	17	16748911	16748913	GCT	-	DEL	KRT17P1	ENST00000399211	human	ensembl	58_37c	-1	known	in_frame_del	c.219_217	p.S73in_frame_del	0.992:0.992:0.992	NULL	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
LARS	0	genome.wustl.edu	37	5	145531429	145531429	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	5	145531429	145531429	T	A	SNP	LARS	NM_020117.9	human	genbank	58_37c	-1	reviewed	missense	c.1421	p.E474V	1.000	superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Nucleotidylyl transferase	PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1,HMMPfam_tRNA-synt_1g,superfamily_Nucleotidylyl transferase	-	no_errors
LOC100132306	0	genome.wustl.edu	37	1	149648577	149648577	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	1	149648577	149648577	G	A	SNP	LOC100132306	XR_037921.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC100289576	0	genome.wustl.edu	37	17	72436047	72436047	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	17	72436047	72436047	C	T	SNP	LOC100289576	XM_002343581.1	human	genbank	58_37c	-1	model	missense	c.1336	p.V446I	1.000	NULL	NULL	-	no_errors
LOC646030	0	genome.wustl.edu	37	17	29374405	29374405	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	17	29374405	29374405	G	A	SNP	LOC646030	XR_039347.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.010	-	-	-	pseudogene
LOC646396	0	genome.wustl.edu	37	15	22570906	22570906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	15	22570906	22570906	G	A	SNP	LOC646396	XM_001726976.2	human	genbank	58_37c	+1	model	missense	c.1819	p.A607T	0.000	NULL	NULL	-	no_errors
MEGF8	0	genome.wustl.edu	37	19	42841015	42841015	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	19	42841015	42841015	C	T	SNP	MEGF8	NM_001410.2	human	genbank	58_37c	+1	validated	missense	c.1301	p.T434M	0.987	superfamily_Gal_oxid_central	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,HMMSmart_EGF_CA,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_PSI,HMMSmart_PSI,HMMSmart_EGF,HMMPfam_Kelch_1,superfamily_Gal_oxid_central,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF57196	-	no_errors
MSTO2P	0	genome.wustl.edu	37	1	155720597	155720597	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	1	155720597	155720597	G	A	SNP	MSTO2P	NR_024117.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.001	-	-	-	pseudogene
MYBPC2	0	genome.wustl.edu	37	19	50939080	50939080	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	19	50939080	50939080	G	A	SNP	MYBPC2	NM_004533.3	human	genbank	58_37c	+1	validated	missense	c.157	p.V53I	0.001	superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726	-	no_errors
MYLK	0	genome.wustl.edu	37	3	123457877	123457877	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	3	123457877	123457877	C	T	SNP	MYLK	NM_053025.3	human	genbank	58_37c	-1	reviewed	missense	c.455	p.R152H	0.997	NULL	HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Immunoglobulin	-	no_errors
NWD1	0	genome.wustl.edu	37	19	16926010	16926010	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	19	16926010	16926010	G	A	SNP	NWD1	NM_001007525.2	human	genbank	58_37c	+1	validated	nonsense	c.4160	p.W1387*	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PIK3R1	0	genome.wustl.edu	37	5	67589611	67589612	+	In_Frame_Ins	INS	-	-	AAAAGT	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	5	67589611	67589612	-	AAAAGT	INS	PIK3R1	NM_181523.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.1374_1375	p.460in_frame_insKS	1.000:1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_GTPase activation domain GAP,superfamily_SH2 domain	-	no_errors
PIP	0	genome.wustl.edu	37	7	142829239	142829239	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	7	142829239	142829239	C	T	SNP	PIP	NM_002652.2	human	genbank	58_37c	+1	validated	silent	c.30	p.A10	0.000	HMMPfam_SVA	HMMPfam_SVA	-	no_errors
PIPSL	0	genome.wustl.edu	37	10	95720748	95720748	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	10	95720748	95720748	C	T	SNP	PIPSL	NR_002319.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
POLR2C	0	genome.wustl.edu	37	16	57504903	57504903	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	16	57504903	57504903	G	T	SNP	POLR2C	NM_032940.2	human	genbank	58_37c	+1	reviewed	nonsense	c.700	p.E234*	1.000	superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMSmart_SM00662	PatternScan_RNA_POL_D_30KD,superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMPfam_RNA_pol_A_bac,superfamily_Insert subdomain of RNA polymerase alpha subunit,HMMSmart_SM00662,PatternScan_EF_HAND_1	-	no_errors
PRDM12	0	genome.wustl.edu	37	9	133543701	133543702	+	Splice_Site	DEL	GT	GT	-	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	9	133543701	133543702	GT	-	DEL	PRDM12	NM_021619.2	human	genbank	58_37c	+1	validated	splice_site_del	c.570+1_570+1	e3+1	0.938:0.797	-	-	-	no_errors
PTEN	0	genome.wustl.edu	37	10	89690810	89690811	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	10	89690810	89690811	GA	-	DEL	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	frame_shift_del	c.217_218	p.E73fs	1.000:1.000	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RBM23	0	genome.wustl.edu	37	14	23371265	23371266	+	In_Frame_Ins	INS	-	-	GCA	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	14	23371265	23371266	-	GCA	INS	RBM23	NM_001077351.1	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.1170_1169	p.394in_frame_insA	0.106:0.764	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RBM41	0	genome.wustl.edu	37	X	106310811	106310811	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	X	106310811	106310811	C	G	SNP	RBM41	NM_018301.3	human	genbank	58_37c	-1	validated	silent	c.1188	p.A396	0.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RFC1	0	genome.wustl.edu	37	4	39347084	39347084	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	4	39347084	39347084	G	A	SNP	RFC1	NM_002913.3	human	genbank	58_37c	-1	reviewed	missense	c.145	p.R49C	0.753	NULL	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT,HMMSmart_AAA,HMMPfam_AAA,superfamily_Pol_clamp_load_C,HMMPfam_RFC1,superfamily_SSF52540	-	no_errors
SERPINA7	0	genome.wustl.edu	37	X	105278233	105278233	+	Missense_Mutation	SNP	A	A	T	rs113057755	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	X	105278233	105278233	A	T	SNP	SERPINA7	NM_000354.5	human	genbank	58_37c	-1	reviewed	missense	c.1037	p.L346H	1.000	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
STX2	0	genome.wustl.edu	37	12	131306288	131306288	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	12	131306288	131306288	C	G	SNP	STX2	NM_194356.1	human	genbank	58_37c	-1	reviewed	missense	c.151	p.E51Q	0.734	HMMPfam_Syntaxin,HMMSmart_SM00503,superfamily_t-snare proteins	HMMPfam_SNARE,HMMSmart_SM00397,HMMPfam_Syntaxin,HMMSmart_SM00503,PatternScan_SYNTAXIN,superfamily_t-snare proteins	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A26F-01A-21D-A167-09	TCGA-A7-A26F-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fc73db72-d0ac-48d0-b809-2f7540482ec5	7d94bbca-3e31-4a95-819a-def4981d43e8	17	7578403	7578403	C	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.527	p.C176F	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
