Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AAMP	0	genome.wustl.edu	37	2	219134765	219134766	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	2	219134765	219134766	-	G	INS	AAMP	NM_001087.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.45_44	p.L16fs	0.977:0.997	NULL	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ABCC6	0	genome.wustl.edu	37	16	16244574	16244574	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	16	16244574	16244574	T	G	SNP	ABCC6	NM_001171.5	human	genbank	58_37c	-1	reviewed	missense	c.4264	p.I1422L	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCG2	0	genome.wustl.edu	37	4	89018761	89018761	+	Splice_Site	DEL	T	T	-	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	4	89018761	89018761	T	-	DEL	ABCG2	NM_004827.2	human	genbank	58_37c	-1	reviewed	splice_site_del	c.1493-2	e12-2	0.954	-	-	-	no_errors
ACE	0	genome.wustl.edu	37	17	61570944	61570944	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	17	61570944	61570944	C	T	SNP	ACE	NM_000789.2	human	genbank	58_37c	+1	reviewed	silent	c.3060	p.D1020	0.069	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Peptidase_M2,PatternScan_ZINC_PROTEASE,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AKT2	0	genome.wustl.edu	37	19	40761100	40761100	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	40761100	40761100	G	A	SNP	AKT2	NM_001626.3	human	genbank	58_37c	-1	reviewed	silent	c.252	p.I84	0.975	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMSmart_S_TK_X,HMMPfam_PH,HMMSmart_PH,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_SSF50729	-	no_errors
ARAP2	0	genome.wustl.edu	37	4	36126581	36126581	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	4	36126581	36126581	C	A	SNP	ARAP2	NM_015230.2	human	genbank	58_37c	-1	reviewed	missense	c.3649	p.D1217Y	0.990	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	HMMPfam_RA,HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_SAM/Pointed domain,superfamily_PH domain-like	-	no_errors
ATXN1	0	genome.wustl.edu	37	6	16328427	16328427	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	6	16328427	16328427	G	A	SNP	ATXN1	NM_000332.3	human	genbank	58_37c	-1	reviewed	missense	c.115	p.R39W	0.998	NULL	HMMSmart_SM00536,HMMPfam_AXH,superfamily_AXH domain	-	no_errors
C11orf63	0	genome.wustl.edu	37	11	122774779	122774779	+	Missense_Mutation	SNP	A	A	C	rs147035469	byFrequency	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	11	122774779	122774779	A	C	SNP	C11orf63	NM_024806.2	human	genbank	58_37c	+1	validated	missense	c.491	p.Y164S	0.054	NULL	NULL	-	no_errors
C17orf70	0	genome.wustl.edu	37	17	79508346	79508346	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	17	79508346	79508346	C	T	SNP	C17orf70	NM_025161.5	human	genbank	58_37c	-1	validated	missense	c.2050	p.A684T	0.948	NULL	NULL	-	no_errors
C2orf47	0	genome.wustl.edu	37	2	200826596	200826596	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	2	200826596	200826596	G	T	SNP	C2orf47	NM_024520.2	human	genbank	58_37c	+1	validated	missense	c.742	p.V248F	1.000	NULL	NULL	-	no_errors
C7orf51	0	genome.wustl.edu	37	7	100084731	100084731	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	7	100084731	100084731	G	A	SNP	C7orf51	NM_173564.2	human	genbank	58_37c	+1	predicted	missense	c.356	p.R119Q	1.000	NULL	NULL	-	no_errors
CALHM3	0	genome.wustl.edu	37	10	105233443	105233443	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	10	105233443	105233443	T	G	SNP	CALHM3	NM_001129742.1	human	genbank	58_37c	-1	validated	missense	c.562	p.T188P	1.000	NULL	NULL	-	no_errors
CDH26	0	genome.wustl.edu	37	20	58547144	58547144	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	20	58547144	58547144	G	A	SNP	CDH26	NM_177980.2	human	genbank	58_37c	+1	reviewed	missense	c.359	p.R120H	0.019	HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CDK4	0	genome.wustl.edu	37	12	58144765	58144765	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	12	58144765	58144765	T	G	SNP	CDK4	NM_000075.2	human	genbank	58_37c	-1	reviewed	missense	c.463	p.K155Q	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CISH	0	genome.wustl.edu	37	3	50645186	50645187	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	3	50645186	50645187	-	G	INS	CISH	NM_013324.5	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.680_679	p.L227fs	1.000:1.000	superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SOCS_box,HMMSmart_SM00253,superfamily_SH2 domain	-	no_errors
CPSF1	0	genome.wustl.edu	37	8	145625003	145625003	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	8	145625003	145625003	C	A	SNP	CPSF1	NM_013291.2	human	genbank	58_37c	-1	validated	missense	c.1217	p.S406I	0.984	NULL	HMMPfam_CPSF_A	-	no_errors
EDEM2	0	genome.wustl.edu	37	20	33706505	33706505	+	Missense_Mutation	SNP	T	T	C	rs140405715	byFrequency	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	20	33706505	33706505	T	C	SNP	EDEM2	NM_018217.2	human	genbank	58_37c	-1	validated	missense	c.1132	p.M378V	0.999	HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases	HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases	-	no_errors
EGR1	0	genome.wustl.edu	37	5	137801480	137801480	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	5	137801480	137801480	G	A	SNP	EGR1	NM_001964.2	human	genbank	58_37c	+1	reviewed	silent	c.30	p.L10	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
EML6	0	genome.wustl.edu	37	2	55090940	55090940	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	2	55090940	55090940	A	G	SNP	EML6	NM_001039753.2	human	genbank	58_37c	+1	validated	missense	c.1846	p.S616G	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,HMMPfam_HELP,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ENSG00000221917	0	genome.wustl.edu	37	9	69443051	69443051	+	Silent	SNP	T	T	C	rs58763354	byCluster	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	9	69443051	69443051	T	C	SNP	ENSG00000221917	ENST00000333394	human	ensembl	58_37c	+1	known	silent	c.630	p.I210	0.001	NULL	NULL	-	no_errors
ENSG00000250450	0	genome.wustl.edu	37	19	19377536	19377536	+	RNA	SNP	A	A	C	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	19377536	19377536	A	C	SNP	ENSG00000250450	ENST00000513173	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.015	-	-	-	no_errors
ENSG00000251143	0	genome.wustl.edu	37	11	71727377	71727377	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	11	71727377	71727377	G	A	SNP	ENSG00000251143	ENST00000502284	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors
ERCC2	0	genome.wustl.edu	37	19	45868130	45868130	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	45868130	45868130	T	C	SNP	ERCC2	NM_000400.3	human	genbank	58_37c	-1	reviewed	missense	c.560	p.Q187R	1.000	HMMSmart_DEXDc2,HMMPfam_DEAD_2,superfamily_SSF52540	PatternScan_DEAH_ATP_HELICASE,HMMSmart_DEXDc2,HMMSmart_HELICc2,HMMPfam_DEAD_2,HMMPfam_DUF1227,superfamily_SSF52540	-	no_errors
FBN3	0	genome.wustl.edu	37	19	8176051	8176051	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	8176051	8176051	G	-	DEL	FBN3	NM_032447.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.4101	p.E1368fs	0.042	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FLOT1	0	genome.wustl.edu	37	6	30698819	30698819	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	6	30698819	30698819	C	T	SNP	FLOT1	NM_005803.2	human	genbank	58_37c	-1	reviewed	missense	c.782	p.R261Q	1.000	HMMSmart_SM00244	HMMPfam_Band_7,HMMSmart_SM00244	-	no_errors
FOXA1	0	genome.wustl.edu	37	14	38061228	38061232	+	Frame_Shift_Del	DEL	AACAT	AACAT	-	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	AACAT	AACAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	14	38061228	38061232	AACAT	-	DEL	FOXA1	NM_004496.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.761_757	p.M253fs	1.000:1.000:1.000:1.000:1.000	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785	HMMPfam_Fork_head,HMMSmart_FH,HMMPfam_Fork_head_N,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,HMMPfam_HNF_C,superfamily_SSF46785	-	no_errors
FRMPD4	0	genome.wustl.edu	37	X	12735775	12735775	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	X	12735775	12735775	C	T	SNP	FRMPD4	NM_014728.3	human	genbank	58_37c	+1	reviewed	missense	c.2830	p.H944Y	1.000	NULL	PatternScan_WW_DOMAIN_1,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41	-	no_errors
FZD2	0	genome.wustl.edu	37	17	42636265	42636265	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	17	42636265	42636265	C	T	SNP	FZD2	NM_001466.2	human	genbank	58_37c	+1	reviewed	silent	c.1209	p.F403	0.977	HMMPfam_Frizzled	superfamily_Frizzled_Cys-rich,HMMPfam_Frizzled,HMMPfam_Fz,HMMSmart_FRI	-	no_errors
GALNT5	0	genome.wustl.edu	37	2	158115248	158115248	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	2	158115248	158115248	G	A	SNP	GALNT5	NM_014568.1	human	genbank	58_37c	+1	provisional	silent	c.654	p.V218	0.043	NULL	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,PatternScan_ALPHA_2_MACROGLOBULIN,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GMIP	0	genome.wustl.edu	37	19	19746227	19746227	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	19746227	19746227	C	T	SNP	GMIP	NM_016573.2	human	genbank	58_37c	-1	reviewed	silent	c.1557	p.E519	1.000	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889	HMMPfam_RhoGAP,HMMSmart_RhoGAP,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_Rho_GAP,superfamily_SSF57889	-	no_errors
GOLGA6L10	0	genome.wustl.edu	37	15	82635183	82635183	+	Missense_Mutation	SNP	A	A	C	rs62010119	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	15	82635183	82635183	A	C	SNP	GOLGA6L10	XM_002343330.1	human	genbank	58_37c	-1	model	missense	c.1246	p.C416G	0.264	NULL	NULL	-	no_errors
GPR108	0	genome.wustl.edu	37	19	6737533	6737534	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	6737533	6737534	-	C	INS	GPR108	NM_001080452.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.55_54	p.Q18fs	0.246:0.396	NULL	HMMPfam_Lung_7-TM_R	-	no_errors
HEATR5A	0	genome.wustl.edu	37	14	31855776	31855776	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	14	31855776	31855776	C	T	SNP	HEATR5A	NM_015473.2	human	genbank	58_37c	-1	validated	missense	c.316	p.V106I	0.077	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
HLA-DRB1	0	genome.wustl.edu	37	6	32551954	32551955	+	Frame_Shift_Del	DEL	CG	CG	-	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	CG	CG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	6	32551954	32551955	CG	-	DEL	HLA-DRB1	NM_002124.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.302_301	p.R101fs	0.173:0.112	HMMPfam_MHC_II_beta,superfamily_MHC_I/II-like_Ag-recog	HMMPfam_MHC_II_beta,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726	-	no_errors
HLA-DRB1	0	genome.wustl.edu	37	6	32551961	32551962	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	6	32551961	32551962	-	T	INS	HLA-DRB1	NM_002124.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.295_294	p.Q98fs	0.002:0.150	HMMPfam_MHC_II_beta,superfamily_MHC_I/II-like_Ag-recog	HMMPfam_MHC_II_beta,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726	-	no_errors
HLA-DRB1	0	genome.wustl.edu	37	6	32551962	32551963	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	6	32551962	32551963	-	T	INS	HLA-DRB1	NM_002124.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.294_293	p.Q99fs	0.150:0.215	HMMPfam_MHC_II_beta,superfamily_MHC_I/II-like_Ag-recog	HMMPfam_MHC_II_beta,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152186837	152186837	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	152186837	152186837	C	T	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	missense	c.7268	p.R2423Q	0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
HTR1E	0	genome.wustl.edu	37	6	87726143	87726144	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	6	87726143	87726144	-	T	INS	HTR1E	NM_000865.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1091_1092	p.T365fs	1.000:0.102	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
IGSF9B	0	genome.wustl.edu	37	11	133790845	133790845	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	11	133790845	133790845	T	G	SNP	IGSF9B	NM_014987.1	human	genbank	58_37c	-1	validated	silent	c.2775	p.P925	1.000	NULL	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
KDM5B	0	genome.wustl.edu	37	1	202746170	202746170	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	202746170	202746170	C	T	SNP	KDM5B	NM_006618.3	human	genbank	58_37c	-1	validated	missense	c.257	p.R86H	0.987	superfamily_ARID-like	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00249,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,HMMPfam_zf-C5HC2,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,HMMPfam_PLU-1,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
KIAA1211	0	genome.wustl.edu	37	4	57182797	57182797	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	4	57182797	57182797	A	C	SNP	KIAA1211	NM_020722.1	human	genbank	58_37c	+1	validated	silent	c.3129	p.P1043	0.751	NULL	NULL	-	no_errors
LDLRAD1	0	genome.wustl.edu	37	1	54479916	54479916	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	54479916	54479916	G	A	SNP	LDLRAD1	NM_001010978.2	human	genbank	58_37c	-1	provisional	silent	c.195	p.C65	0.001	NULL	HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	-	no_errors
LOC729057	0	genome.wustl.edu	37	22	16123092	16123092	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	22	16123092	16123092	G	C	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LRRC70	0	genome.wustl.edu	37	5	61876059	61876059	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	5	61876059	61876059	G	C	SNP	LRRC70	NM_181506.4	human	genbank	58_37c	+1	validated	missense	c.794	p.R265T	0.995	superfamily_SSF52058	HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
MAGEB6	0	genome.wustl.edu	37	X	26212915	26212915	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	X	26212915	26212915	G	T	SNP	MAGEB6	NM_173523.2	human	genbank	58_37c	+1	reviewed	missense	c.952	p.D318Y	0.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAS1L	0	genome.wustl.edu	37	6	29454672	29454672	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	6	29454672	29454672	C	T	SNP	MAS1L	NM_052967.1	human	genbank	58_37c	-1	provisional	silent	c.1008	p.A336	0.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
MPP3	0	genome.wustl.edu	37	17	41909250	41909250	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	17	41909250	41909250	C	A	SNP	MPP3	NM_001932.3	human	genbank	58_37c	-1	reviewed	missense	c.25	p.G9C	0.983	NULL	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00569,HMMPfam_Guanylate_kin,HMMSmart_SM00072,HMMPfam_SH3_2,HMMPfam_L27,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MTOR	0	genome.wustl.edu	37	1	11319442	11319442	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	11319442	11319442	C	T	SNP	MTOR	NM_004958.3	human	genbank	58_37c	-1	reviewed	missense	c.25	p.A9T	0.981	NULL	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_FAT,HMMPfam_FATC,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF48452	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195511959	195511959	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	3	195511959	195511959	G	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	silent	c.6492	p.T2164	0.632	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NBPF10	0	genome.wustl.edu	37	1	145323666	145323666	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	145323666	145323666	A	G	SNP	NBPF10	NM_001039703.4	human	genbank	58_37c	+1	provisional	missense	c.3728	p.D1243G	0.004	NULL	HMMPfam_DUF1220	-	no_errors
NCDN	0	genome.wustl.edu	37	1	36028200	36028200	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	36028200	36028200	A	C	SNP	NCDN	NM_001014839.1	human	genbank	58_37c	+1	reviewed	missense	c.1351	p.T451P	0.988	HMMPfam_Neurochondrin	HMMPfam_Neurochondrin	-	no_errors
NLRP2	0	genome.wustl.edu	37	19	55494133	55494133	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	55494133	55494133	T	G	SNP	NLRP2	NM_017852.3	human	genbank	58_37c	+1	validated	missense	c.1067	p.V356G	0.030	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NPC1	0	genome.wustl.edu	37	18	21114479	21114479	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	18	21114479	21114479	C	T	SNP	NPC1	NM_000271.4	human	genbank	58_37c	-1	reviewed	silent	c.3522	p.A1174	0.000	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
NPHS2	0	genome.wustl.edu	37	1	179523663	179523663	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	179523663	179523663	C	T	SNP	NPHS2	NM_014625.2	human	genbank	58_37c	-1	reviewed	missense	c.742	p.A248T	0.996	HMMPfam_Band_7,HMMSmart_SM00244,PatternScan_BAND_7	HMMPfam_Band_7,HMMSmart_SM00244,PatternScan_BAND_7	-	no_errors
NPIPL2	0	genome.wustl.edu	37	16	74424113	74424113	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	16	74424113	74424113	A	C	SNP	NPIPL2	XM_002344099.1	human	genbank	58_37c	+1	model	missense	c.776	p.H259P	0.016	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
OBSCN	0	genome.wustl.edu	37	1	228464221	228464221	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	228464221	228464221	G	-	DEL	OBSCN	NM_001098623.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.6291	p.V2098fs	1.000	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
OBSCN	0	genome.wustl.edu	37	1	228464225	228464226	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	1	228464225	228464226	-	G	INS	OBSCN	NM_001098623.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.6295_6296	p.Q2099fs	1.000:1.000	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
OSGIN2	0	genome.wustl.edu	37	8	90937095	90937095	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	8	90937095	90937095	A	G	SNP	OSGIN2	NM_001126111.1	human	genbank	58_37c	+1	validated	missense	c.985	p.M329V	0.992	superfamily_FAD/NAD(P)-binding domain	superfamily_FAD/NAD(P)-binding domain	-	no_errors
PHLDB2	0	genome.wustl.edu	37	3	111604184	111604184	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	3	111604184	111604184	A	G	SNP	PHLDB2	NM_001134438.1	human	genbank	58_37c	+1	validated	silent	c.1260	p.S420	0.434	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
PIK3R1	0	genome.wustl.edu	37	5	67589613	67589614	+	In_Frame_Ins	INS	-	-	AAGTCGAGAATATGATAG	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	5	67589613	67589614	-	AAGTCGAGAATATGATAG	INS	PIK3R1	NM_181523.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.1376_1377	p.463in_frame_insYDRSRE	1.000:1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_GTPase activation domain GAP,superfamily_SH2 domain	-	no_errors
PRPF6	0	genome.wustl.edu	37	20	62655955	62655955	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	20	62655955	62655955	A	G	SNP	PRPF6	NM_012469.3	human	genbank	58_37c	+1	reviewed	missense	c.1817	p.K606R	1.000	HMMSmart_HAT,superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_HAT,HMMPfam_PRP1_N,superfamily_SSF48452	-	no_errors
PTGIS	0	genome.wustl.edu	37	20	48160880	48160881	+	Frame_Shift_Ins	INS	-	-	TG	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	20	48160880	48160881	-	TG	INS	PTGIS	NM_000961.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.483_482	p.E161fs	0.496:0.591	superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
RIMS1	0	genome.wustl.edu	37	6	73023340	73023340	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	6	73023340	73023340	G	T	SNP	RIMS1	NM_014989.4	human	genbank	58_37c	+1	reviewed	missense	c.4095	p.M1365I	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
SETD1B	0	genome.wustl.edu	37	12	122243990	122244003	+	Frame_Shift_Del	DEL	CACGTGGAGCTGGA	CACGTGGAGCTGGA	-	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	CACGTGGAGCTGGA	CACGTGGAGCTGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	12	122243990	122244003	CACGTGGAGCTGGA	-	DEL	SETD1B	NM_015048.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.523_536	p.V176fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMSmart_RRM,superfamily_SSF54928	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET,superfamily_SSF54928,superfamily_SSF82199	-	no_errors
SIN3B	0	genome.wustl.edu	37	19	16942408	16942408	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	16942408	16942408	G	A	SNP	SIN3B	NM_015260.1	human	genbank	58_37c	+1	provisional	missense	c.331	p.D111N	1.000	NULL	HMMPfam_PAH,superfamily_PAH2 domain,HMMPfam_HDAC_interact,HMMSmart_SM00761	-	no_errors
SLC6A1	0	genome.wustl.edu	37	3	11059119	11059119	+	Silent	SNP	C	C	T	rs139045747	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	3	11059119	11059119	C	T	SNP	SLC6A1	NM_003042.3	human	genbank	58_37c	+1	validated	silent	c.222	p.C74	0.792	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
SMCR8	0	genome.wustl.edu	37	17	18226154	18226154	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	17	18226154	18226154	A	C	SNP	SMCR8	NM_144775.2	human	genbank	58_37c	+1	validated	missense	c.2584	p.T862P	0.994	NULL	NULL	-	no_errors
TGM1	0	genome.wustl.edu	37	14	24727530	24727530	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	14	24727530	24727530	A	C	SNP	TGM1	NM_000359.2	human	genbank	58_37c	-1	reviewed	missense	c.1363	p.W455G	1.000	HMMPfam_Transglut_core,HMMSmart_TGc,superfamily_SSF54001	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_TGc,HMMPfam_Transglut_C,superfamily_Transglut_C,PatternScan_TRANSGLUTAMINASES,superfamily_Ig_E-set,superfamily_SSF54001	-	no_errors
TSGA10	0	genome.wustl.edu	37	2	99725408	99725408	+	Missense_Mutation	SNP	C	C	T	rs143573112	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	2	99725408	99725408	C	T	SNP	TSGA10	NM_025244.2	human	genbank	58_37c	-1	validated	missense	c.98	p.R33H	1.000	NULL	NULL	-	no_errors
UTP3	0	genome.wustl.edu	37	4	71554620	71554622	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	4	71554620	71554622	GAG	-	DEL	UTP3	NM_020368.2	human	genbank	58_37c	+1	validated	in_frame_del	c.226_228	p.E79in_frame_del	0.044:0.001:0.001	NULL	HMMPfam_Sas10_Utp3,HMMPfam_Sas10_Utp3_C	-	no_errors
WWC3	0	genome.wustl.edu	37	X	10106889	10106889	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	X	10106889	10106889	C	T	SNP	WWC3	NM_015691.3	human	genbank	58_37c	+1	validated	silent	c.2997	p.D999	0.921	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
XCR1	0	genome.wustl.edu	37	3	46063031	46063031	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	3	46063031	46063031	T	G	SNP	XCR1	NM_001024644.1	human	genbank	58_37c	-1	reviewed	missense	c.409	p.T137P	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
ZNF615	0	genome.wustl.edu	37	19	52497121	52497121	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	52497121	52497121	C	T	SNP	ZNF615	NM_198480.2	human	genbank	58_37c	-1	provisional	missense	c.1208	p.S403N	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF676	0	genome.wustl.edu	37	19	22363549	22363549	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	19	22363549	22363549	G	A	SNP	ZNF676	NM_001001411.2	human	genbank	58_37c	-1	provisional	missense	c.970	p.L324F	0.561	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZP1	0	genome.wustl.edu	37	11	60642669	60642669	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A08S-01A-11W-A050-09	TCGA-A8-A08S-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c981525-80af-4f79-b94a-be00131ab872	91135c15-292f-49d0-9eb0-ca16ac6a6a32	11	60642669	60642669	G	T	SNP	ZP1	NM_207341.2	human	genbank	58_37c	+1	validated	silent	c.1722	p.G574	0.545	NULL	superfamily_P_trefoil,HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_P_TREFOIL,PatternScan_ZP_1	-	no_errors
