Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTS14	140766	genome.wustl.edu	37	10	72517774	72517774	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	10	72517774	72517774	C	T	SNP	ADAMTS14	NM_139155.2	human	genbank	58_37c	+1	reviewed	silent	c.3003	p.N1001	0.056	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_SSF55486	-	no_errors
ANGPTL7	10218	genome.wustl.edu	37	1	11254592	11254592	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	11254592	11254592	C	T	SNP	ANGPTL7	NM_021146.2	human	genbank	58_37c	+1	provisional	silent	c.747	p.L249	1.000	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
C10orf120	399814	genome.wustl.edu	37	10	124457723	124457723	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	10	124457723	124457723	T	A	SNP	C10orf120	NM_001010912.1	human	genbank	58_37c	-1	predicted	silent	c.534	p.G178	0.000	NULL	NULL	-	no_errors
C12orf56	115749	genome.wustl.edu	37	12	64746720	64746720	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	12	64746720	64746720	C	A	SNP	C12orf56	NM_001099676.2	human	genbank	58_37c	-1	validated	missense	c.369	p.R123S	0.836	NULL	NULL	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68862203	68862204	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	16	68862203	68862204	-	C	INS	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.2291_2292	p.Q765fs	1.000:1.000	HMMPfam_Cadherin_C	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CIITA	4261	genome.wustl.edu	37	16	10996535	10996535	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	16	10996535	10996535	T	C	SNP	CIITA	NM_000246.3	human	genbank	58_37c	+1	reviewed	silent	c.649	p.L217	0.000	NULL	HMMPfam_LRR_1,HMMSmart_SM00368,HMMPfam_NACHT,superfamily_RNI-like	-	no_errors
ENSG00000245058	0	genome.wustl.edu	37	6	26056695	26056695	+	RNA	SNP	C	C	G	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	6	26056695	26056695	C	G	SNP	HIST1H1C	NM_005319.3	human	genbank	58_37c	-1	reviewed	5_prime_untranslated_region	c.-39	NULL	0.009	-	-	-	no_errors
ESR2	2100	genome.wustl.edu	37	14	64727440	64727440	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	14	64727440	64727440	G	A	SNP	ESR2	NM_001437.2	human	genbank	58_37c	-1	reviewed	missense	c.679	p.R227C	1.000	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
ITGA11	22801	genome.wustl.edu	37	15	68624257	68624257	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	15	68624257	68624257	G	A	SNP	ITGA11	NM_001004439.1	human	genbank	58_37c	-1	reviewed	silent	c.1710	p.H570	0.985	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,superfamily_vWA-like,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
MAN2C1	4123	genome.wustl.edu	37	15	75649184	75649184	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	15	75649184	75649184	G	A	SNP	MAN2C1	NM_006715.2	human	genbank	58_37c	-1	validated	silent	c.2607	p.N869	0.978	HMMPfam_Glyco_hydro_38C	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_SSF88688	-	no_errors
MBD1	4152	genome.wustl.edu	37	18	47796443	47796443	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	18	47796443	47796443	G	C	SNP	MBD1	ENST00000339998	human	ensembl	58_37c	-1	known	missense	c.1591	p.Q531E	0.001	NULL	HMMPfam_MBD,HMMSmart_MBD,HMMPfam_zf-CXXC,superfamily_DNA-binding_integrase-type	-	no_errors
NHSL2	340527	genome.wustl.edu	37	X	71359816	71359816	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	X	71359816	71359816	C	T	SNP	NHSL2	NM_001013627.2	human	genbank	58_37c	+1	provisional	silent	c.1320	p.G440	0.005	NULL	NULL	-	no_errors
OR2L2	26246	genome.wustl.edu	37	1	248202361	248202361	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	248202361	248202361	G	A	SNP	OR2L2	NM_001004686.2	human	genbank	58_37c	+1	provisional	silent	c.792	p.L264	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OSCP1	127700	genome.wustl.edu	37	1	36887790	36887790	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	36887790	36887790	A	C	SNP	OSCP1	NM_145047.4	human	genbank	58_37c	-1	validated	missense	c.810	p.H270Q	0.882	NULL	HMMPfam_Oscp1	-	no_errors
RYR2	6262	genome.wustl.edu	37	1	237550619	237550619	+	Silent	SNP	C	C	T	rs112680790	by1000genomes	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	1	237550619	237550619	C	T	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	silent	c.615	p.A205	0.000	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
TBX3	6926	genome.wustl.edu	37	12	115118894	115118895	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	12	115118894	115118895	-	T	INS	TBX3	NM_016569.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.447_446	p.Y149fs	0.891:1.000	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TTC21B	79809	genome.wustl.edu	37	2	166786867	166786867	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	166786867	166786867	C	T	SNP	TTC21B	NM_024753.3	human	genbank	58_37c	-1	validated	missense	c.902	p.R301H	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179434772	179434772	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	179434772	179434772	G	A	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.68377	p.R22793C	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UGGT1	56886	genome.wustl.edu	37	2	128884987	128884987	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	2	128884987	128884987	A	G	SNP	UGGT1	NM_020120.3	human	genbank	58_37c	+1	validated	missense	c.1187	p.N396S	1.000	NULL	PatternScan_ER_TARGET,HMMPfam_UDP-g_GGTase,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
USP17L7	0	genome.wustl.edu	37	8	11990509	11990509	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A0A4-01A-11W-A019-09	TCGA-A8-A0A4-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1fc4d542-86ac-42bc-9fbb-272c23e6aa72	db493df5-6038-4dc3-8bc7-eab44d4d9dcb	8	11990509	11990509	G	T	SNP	USP17L7	ENST00000416902	human	ensembl	58_37c	-1	known	missense	c.1010	p.S337Y	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
