Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
TKTL1	0	genome.wustl.edu	36	X	153211088	153211088	+	Silent	SNP	C	C	T			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	X	153211088	153211088	C	T	SNP	TKTL1	NM_012253.1	human	genbank	54_36p	1	validated	silent	c.1647	p.A549	0.915	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like	HMMPfam_Transketolase_N,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like,superfamily_Thiamin diphosphate-binding fold (THDP-binding)	-	no_errors	602	17	2.75	308	215	41.11	0	0	0
GUCA2A	0	genome.wustl.edu	36	1	42401777	42401777	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	1	42401777	42401777	A	G	SNP	GUCA2A	NM_033553.2	human	genbank	54_36p	-1	validated	missense	c.167	p.F56S	0	HMMPfam_Guanylin,superfamily_Proguanylin	HMMPfam_Guanylin,superfamily_Proguanylin,PatternScan_2FE2S_FER_1	-	no_errors	246	3	1.2	150	109	42.08	0	0	0
DNMT3A	0	genome.wustl.edu	36	2	25310665	25310665	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	A	A	A	C	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	2	25310665	25310665	A	C	SNP	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	missense	c.2726	p.F909C	1	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors	703	21	2.9	329	274	45.44	54	41	43.16
SLC17A3	0	genome.wustl.edu	36	6	25958309	25958309	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	6	25958309	25958309	G	A	SNP	SLC17A3	NM_001098486.1	human	genbank	54_36p	-1	validated	missense	c.1069	p.L357F	1	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors	810	29	3.45	762	619	44.82	0	0	0
LRWD1	0	genome.wustl.edu	36	7	101893698	101893698	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	7	101893698	101893698	C	A	SNP	LRWD1	NM_152892.1	human	genbank	54_36p	1	provisional	missense	c.408	p.N136K	0.923	superfamily_SSF52058	HMMPfam_LRR_1,HMMSmart_WD40,HMMSmart_LRR_TYP,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_SSF52058	-	no_errors	194	2	1.02	110	95	46.34	12	19	61.29
BAAT	0	genome.wustl.edu	36	9	103164661	103164661	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	9	103164661	103164661	G	A	SNP	BAAT	NM_001701.1	human	genbank	54_36p	-1	reviewed	missense	c.1127	p.T376M	0	HMMPfam_BAAT_C,superfamily_SSF53474	HMMPfam_Bile_Hydr_Trans,HMMPfam_BAAT_C,superfamily_SSF53474	-	no_errors	757	20	2.57	641	600	48.35	0	0	0
MUC5B	0	genome.wustl.edu	36	11	1226345	1226345	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	11	1226345	1226345	C	A	SNP	MUC5B	NM_002458.1	human	genbank	54_36p	1	validated	missense	c.11668	p.P3890T	0	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors	4	1	20	8	12	60	0	0	0
MUC5B	0	genome.wustl.edu	36	11	1228728	1228728	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	11	1228728	1228728	C	T	SNP	MUC5B	NM_002458.1	human	genbank	54_36p	1	validated	missense	c.14051	p.T4684I	0.023	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors	3	0	0	0	1	100	0	0	0
SCEL	0	genome.wustl.edu	36	13	77114864	77114864	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	13	77114864	77114864	T	C	SNP	SCEL	NM_144777.2	human	genbank	54_36p	1	reviewed	missense	c.1970	p.L657S	1	HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1	HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1	-	no_errors	467	17	3.51	72	449	86.18	0	0	0
ANG	0	genome.wustl.edu	36	14	20231582	20231582	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	14	20231582	20231582	G	A	SNP	ANG	NM_001097577.2	human	genbank	54_36p	1	reviewed	missense	c.19	p.V7I	0.001	NULL	HMMPfam_RnaseA,HMMSmart_SM00092,PatternScan_RNASE_PANCREATIC,superfamily_RNase A-like	-	no_errors	551	5	0.9	346	314	47.43	0	0	0
SPTBN5	0	genome.wustl.edu	36	15	39955685	39955685	+	Silent	SNP	G	G	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	15	39955685	39955685	G	A	SNP	SPTBN5	NM_016642.2	human	genbank	54_36p	-1	validated	silent	c.4041	p.N1347	0.001	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like	-	no_errors	194	7	3.48	105	102	49.28	0	0	0
PKD1L3	0	genome.wustl.edu	36	16	70573608	70573608	+	Silent	SNP	G	G	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	16	70573608	70573608	G	A	SNP	PKD1L3	ENST00000335106	human	ensembl	54_36p	-1	known	silent	c.994	p.L332	0.72	NULL	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Ion_trans,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),superfamily_C-type lectin-like	-	no_errors	599	14	2.28	323	309	48.74	0	1	100
ABCA10	0	genome.wustl.edu	36	17	64682512	64682512	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	17	64682512	64682512	T	C	SNP	ABCA10	NM_080282.3	human	genbank	54_36p	-1	reviewed	missense	c.2879	p.K960R	0.597	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	461	7	1.5	363	305	45.66	0	0	0
MYH14	0	genome.wustl.edu	36	19	55475196	55475196	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	19	55475196	55475196	C	G	SNP	MYH14	NM_001077186.1	human	genbank	54_36p	1	reviewed	missense	c.4024	p.L1342V	1	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	896	31	3.34	317	293	47.95	0	0	0
CDH4	0	genome.wustl.edu	36	20	59752224	59752224	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	20	59752224	59752224	C	T	SNP	CDH4	NM_001794.2	human	genbank	54_36p	1	reviewed	missense	c.380	p.P127L	0	superfamily_Cadherin	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin	-	no_errors	289	6	2.03	131	121	48.02	0	0	0
LOC400879	0	genome.wustl.edu	36	22	14537982	14537982	+	RNA	SNP	G	G	T			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	22	14537982	14537982	G	T	SNP	LOC400879	XR_041650.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	no_errors	4	2	33.33	4	0	0	0	0	0
NEFH	0	genome.wustl.edu	36	22	28215618	28215618	+	Silent	SNP	T	T	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	22	28215618	28215618	T	A	SNP	NEFH	NM_021076.3	human	genbank	54_36p	1	reviewed	silent	c.1989	p.P663	0.041	NULL	HMMPfam_DUF1388,HMMPfam_Filament,PatternScan_IF	-	no_errors	375	1	0.26	528	121	18.33	4	0	0
NPM1	0	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	CATG			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	-	-	-	CATG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	5	170770152	170770153	-	CATG	INS	NPM1	NM_002520.1	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
FLT3	0	genome.wustl.edu	36	13	27506214	27506215	+	In_Frame_Ins	INS	-	-	TTACCAAACTCTAAATTTTCTCTTGGAAACTCCCAT			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	-	-	-	TTACCAAACTCTAAATTTTCTCTTGGAAACTCCCAT	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	c46cad3f-6265-4baf-9ee9-fa7394a27373	fe6bea4d-e433-4977-ab67-b7aa610de359	13	27506214	27506215	-	TTACCAAACTCTAAATTTTCTCTTGGAAACTCCCAT	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins		in_frame_ins	0.779:0.796	-	-	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
