Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADH1B	125	genome.wustl.edu	37	4	100232778	100232778	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	4	100232778	100232778	G	T	SNP	ADH1B	NM_000668.4	human	genbank	58_37c	-1	reviewed	silent	c.864	p.G288	0.000	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains	PatternScan_ADH_ZINC,superfamily_GroES-like,HMMPfam_ADH_zinc_N,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
AKAP13	11214	genome.wustl.edu	37	15	86124520	86124520	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	15	86124520	86124520	C	T	SNP	AKAP13	NM_006738.4	human	genbank	58_37c	+1	reviewed	missense	c.3221	p.S1074F	0.000	NULL	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_PH,HMMSmart_PH,superfamily_ANK,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_RII_binding_1,superfamily_SSF50729,superfamily_SSF57889	-	no_errors
ANPEP	290	genome.wustl.edu	37	15	90347735	90347736	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	15	90347735	90347736	-	G	INS	ANPEP	NM_001150.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1011_1010	p.L338fs	0.115:1.000	HMMPfam_Peptidase_M1,superfamily_SSF55486	PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M1,superfamily_SSF55486,superfamily_SSF63737	-	no_errors
ARHGEF17	9828	genome.wustl.edu	37	11	73076908	73076908	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	11	73076908	73076908	G	A	SNP	ARHGEF17	NM_014786.3	human	genbank	58_37c	+1	validated	missense	c.5911	p.G1971S	1.000	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_PH domain-like	-	no_errors
ATP2B2	491	genome.wustl.edu	37	3	10370621	10370621	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	3	10370621	10370621	C	T	SNP	ATP2B2	NM_001001331.2	human	genbank	58_37c	-1	reviewed	silent	c.3609	p.P1203	0.788	NULL	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
BBOX1	8424	genome.wustl.edu	37	11	27148982	27148982	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	11	27148982	27148982	G	A	SNP	BBOX1	NM_003986.2	human	genbank	58_37c	+1	reviewed	silent	c.1146	p.R382	0.000	superfamily_Clavaminate synthase-like	HMMPfam_TauD,superfamily_Clavaminate synthase-like	-	no_errors
CD1C	911	genome.wustl.edu	37	1	158261934	158261934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	1	158261934	158261934	G	A	SNP	CD1C	NM_001765.2	human	genbank	58_37c	+1	reviewed	missense	c.389	p.G130D	0.001	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog	HMMPfam_MHC_I,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726	-	no_errors
CHL1	10752	genome.wustl.edu	37	3	436516	436516	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	3	436516	436516	A	T	SNP	CHL1	NM_006614.2	human	genbank	58_37c	+1	reviewed	nonsense	c.3055	p.K1019*	0.053	superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Immunoglobulin	-	no_errors
CHM	1121	genome.wustl.edu	37	X	85282501	85282501	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	X	85282501	85282501	A	G	SNP	CHM	NM_000390.2	human	genbank	58_37c	-1	reviewed	missense	c.110	p.V37A	1.000	HMMPfam_GDI,superfamily_SSF51905	HMMPfam_GDI,superfamily_SSF51905,superfamily_SSF54373	-	no_errors
CLEC17A	388512	genome.wustl.edu	37	19	14710534	14710534	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	19	14710534	14710534	G	A	SNP	CLEC17A	NM_207390.2	human	genbank	58_37c	+1	validated	missense	c.601	p.G201S	0.885	NULL	HMMPfam_Lectin_C,superfamily_C-type lectin-like	-	no_errors
COMP	1311	genome.wustl.edu	37	19	18895094	18895094	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	19	18895094	18895094	C	T	SNP	COMP	NM_000095.2	human	genbank	58_37c	-1	reviewed	missense	c.1994	p.R665Q	1.000	HMMPfam_TSP_C,superfamily_ConA_like_lec_gl	HMMSmart_EGF_CA,HMMPfam_TSP_3,HMMSmart_EGF,HMMPfam_TSP_C,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF103647,superfamily_SSF57196	-	no_errors
CROT	54677	genome.wustl.edu	37	7	87005203	87005203	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	7	87005203	87005203	G	A	SNP	CROT	NM_001143935.1	human	genbank	58_37c	+1	reviewed	silent	c.894	p.Q298	1.000	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases	-	no_errors
CSTF2	1478	genome.wustl.edu	37	X	100083082	100083082	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	X	100083082	100083082	C	T	SNP	CSTF2	NM_001325.2	human	genbank	58_37c	+1	reviewed	missense	c.880	p.R294W	0.762	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
DBH	1621	genome.wustl.edu	37	9	136516770	136516770	+	Silent	SNP	C	C	T	rs143743431	byFrequency	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	9	136516770	136516770	C	T	SNP	DBH	NM_000787.3	human	genbank	58_37c	+1	reviewed	silent	c.1206	p.S402	0.001	superfamily_PHM_PNGase_F,HMMPfam_Cu2_monoox_C	HMMPfam_Cu2_monooxygen,PatternScan_CU2_MONOOXYGENASE_1,HMMSmart_DoH,superfamily_PHM_PNGase_F,HMMPfam_DOMON,HMMPfam_Cu2_monoox_C,PatternScan_CU2_MONOOXYGENASE_2	-	no_errors
DNAJB8	165721	genome.wustl.edu	37	3	128181429	128181429	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	3	128181429	128181429	C	T	SNP	DNAJB8	NM_153330.2	human	genbank	58_37c	-1	validated	silent	c.660	p.V220	0.724	NULL	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,PatternScan_DNAJ_1	-	no_errors
ENSG00000214627	0	genome.wustl.edu	37	16	31987200	31987200	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	16	31987200	31987200	G	T	SNP	ENSG00000214627	ENST00000398685	human	ensembl	58_37c	+1	known	missense	c.3	p.M1I	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_RhoGAP,HMMSmart_PH,superfamily_Rho_GAP,superfamily_SSF50729	-	no_errors
ENSG00000222037	0	genome.wustl.edu	37	22	23055588	23055588	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	22	23055588	23055588	A	G	SNP	IGLV3-21	ENST00000390308	human	ensembl	58_37c	+1	known	missense	c.251	p.N84S	0.815	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
GABPA	2551	genome.wustl.edu	37	21	27141488	27141488	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	21	27141488	27141488	C	G	SNP	GABPA	NM_002040.3	human	genbank	58_37c	+1	validated	missense	c.1310	p.P437R	1.000	NULL	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
GPATCH2	55105	genome.wustl.edu	37	1	217688214	217688214	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	1	217688214	217688214	T	G	SNP	GPATCH2	NM_018040.2	human	genbank	58_37c	-1	provisional	silent	c.1116	p.P372	0.191	NULL	HMMPfam_G-patch,HMMSmart_SM00443	-	no_errors
HIST2H2BF	440689	genome.wustl.edu	37	1	149783828	149783828	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	1	149783828	149783828	C	A	SNP	HIST2H2BF	ENST00000427880	human	ensembl	58_37c	-1	known	missense	c.51	p.K17N	0.854	superfamily_Histone-fold	HMMSmart_H2B,PatternScan_HISTONE_H2B,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
IFNE	338376	genome.wustl.edu	37	9	21481249	21481249	+	Nonsense_Mutation	SNP	G	G	A	rs147478752	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	9	21481249	21481249	G	A	SNP	IFNE	NM_176891.4	human	genbank	58_37c	-1	validated	nonsense	c.445	p.R149*	0.142	HMMPfam_Interferon,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D,superfamily_4_helix_cytokine	HMMPfam_Interferon,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D,superfamily_4_helix_cytokine	-	no_errors
INHBA	3624	genome.wustl.edu	37	7	41729515	41729515	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	7	41729515	41729515	C	T	SNP	INHBA	NM_002192.2	human	genbank	58_37c	-1	reviewed	nonsense	c.1014	p.W338*	1.000	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines	HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines	-	no_errors
KIAA1012	22878	genome.wustl.edu	37	18	29497565	29497565	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	18	29497565	29497565	C	A	SNP	KIAA1012	NM_014939.3	human	genbank	58_37c	-1	validated	nonsense	c.418	p.E140*	1.000	NULL	superfamily_TPR-like	-	no_errors
MIR648	0	genome.wustl.edu	37	22	18463645	18463645	+	RNA	SNP	C	C	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	22	18463645	18463645	C	A	SNP	MIR648	ENST00000385046	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors
MKI67	4288	genome.wustl.edu	37	10	129905447	129905447	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	10	129905447	129905447	C	A	SNP	MKI67	NM_002417.4	human	genbank	58_37c	-1	reviewed	missense	c.4657	p.A1553S	0.000	HMMPfam_K167R	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain,HMMPfam_K167R	-	no_errors
MTERFD1	51001	genome.wustl.edu	37	8	97263275	97263277	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	8	97263275	97263277	AGG	-	DEL	MTERFD1	NM_015942.3	human	genbank	58_37c	-1	provisional	in_frame_del	c.536_534	p.L180in_frame_del	1.000:1.000:0.998	HMMPfam_mTERF,HMMSmart_SM00733	HMMPfam_mTERF,HMMSmart_SM00733	-	no_errors
PCDHA6	56142	genome.wustl.edu	37	5	140209782	140209782	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	5	140209782	140209782	C	T	SNP	PCDHA6	NM_018909.2	human	genbank	58_37c	+1	reviewed	silent	c.2106	p.I702	0.016	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RERE	473	genome.wustl.edu	37	1	8421506	8421506	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	1	8421506	8421506	A	C	SNP	RERE	NM_001042681.1	human	genbank	58_37c	-1	reviewed	missense	c.2061	p.S687R	1.000	HMMPfam_Atrophin-1	HMMPfam_GATA,HMMSmart_SM00401,HMMPfam_ELM2,HMMSmart_SM00717,HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_Atrophin-1,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
RNF157	114804	genome.wustl.edu	37	17	74154520	74154520	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	17	74154520	74154520	G	A	SNP	RNF157	NM_052916.2	human	genbank	58_37c	-1	validated	missense	c.1367	p.S456L	0.998	NULL	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
TARBP1	6894	genome.wustl.edu	37	1	234566040	234566040	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	1	234566040	234566040	G	T	SNP	TARBP1	NM_005646.3	human	genbank	58_37c	-1	reviewed	missense	c.2402	p.T801K	0.001	NULL	HMMPfam_SpoU_methylase,superfamily_ARM-type_fold,superfamily_SSF75217	-	no_errors
TCF7L2	6934	genome.wustl.edu	37	10	114849224	114849224	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	10	114849224	114849224	T	C	SNP	TCF7L2	ENST00000355717	human	ensembl	58_37c	+1	known	silent	c.159	p.T53	1.000	HMMPfam_CTNNB1_binding	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box,HMMPfam_CTNNB1_binding	-	no_errors
UNC13B	10497	genome.wustl.edu	37	9	35398604	35398604	+	Silent	SNP	G	G	A	rs111762507	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	9	35398604	35398604	G	A	SNP	UNC13B	NM_006377.3	human	genbank	58_37c	+1	reviewed	silent	c.3639	p.T1213	0.379	HMMPfam_DUF1041	HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889	-	no_errors
ZNF292	23036	genome.wustl.edu	37	6	87966725	87966747	+	Frame_Shift_Del	DEL	ATATGCTGCATTTAAAATGCAGC	ATATGCTGCATTTAAAATGCAGC	-	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	ATATGCTGCATTTAAAATGCAGC	ATATGCTGCATTTAAAATGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1b08a181-a73b-4506-aaa3-3521f2c57207	1acce21e-7513-402f-b586-423415f7cc2c	6	87966725	87966747	ATATGCTGCATTTAAAATGCAGC	-	DEL	ZNF292	NM_015021.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.3378_3400	p.Y1127fs	0.807:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
