Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AP3D1	8943	genome.wustl.edu	37	19	2114127	2114127	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	19	2114127	2114127	C	-	DEL	AP3D1	NM_003938.5	human	genbank	58_37c	-1	validated	frame_shift_del	c.2598	p.K867fs	0.158	HMMPfam_BLVR	HMMPfam_Adaptin_N,HMMPfam_BLVR,superfamily_ARM repeat	-	no_errors
C2orf16	84226	genome.wustl.edu	37	2	27803312	27803312	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	2	27803312	27803312	G	C	SNP	C2orf16	NM_032266.3	human	genbank	58_37c	+1	validated	missense	c.3873	p.K1291N	0.063	NULL	NULL	-	no_errors
C9orf86	55684	genome.wustl.edu	37	9	139731969	139731969	+	Silent	SNP	C	C	T	rs2811742	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	9	139731969	139731969	C	T	SNP	C9orf86	NM_024718.4	human	genbank	58_37c	+1	validated	silent	c.981	p.A327	0.000	NULL	HMMSmart_SM00175,HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000206192	0	genome.wustl.edu	37	13	19317503	19317503	+	Silent	SNP	T	T	C	rs58051099	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	13	19317503	19317503	T	C	SNP	ENSG00000206192	ENST00000443000	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-19317503	NULL	0.003	-	-	-	no_coding_region:pseudogene
ENSG00000247188	0	genome.wustl.edu	37	2	74643418	74643418	+	RNA	DEL	G	G	-	rs147884408	by1000genomes	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	2	74643418	74643418	G	-	DEL	C2orf81	NM_001145054.1	human	genbank	58_37c	-1	predicted	intronic	c.28-50	e2-50	0.000	-	-	-	no_errors
ENSG00000247630	0	genome.wustl.edu	37	1	36180629	36180629	+	RNA	DEL	G	G	-	novel	unknown	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	1	36180629	36180629	G	-	DEL	C1orf216	NM_152374.1	human	genbank	58_37c	-1	predicted	3_prime_untranslated_region	c.*604	NULL	0.000	-	-	-	no_errors
FAM70B	348013	genome.wustl.edu	37	13	114504663	114504663	+	Missense_Mutation	SNP	G	G	A	rs41284482	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	13	114504663	114504663	G	A	SNP	FAM70B	NM_182614.2	human	genbank	58_37c	+1	provisional	missense	c.547	p.V183I	0.984	NULL	NULL	-	no_errors
GPR98	84059	genome.wustl.edu	37	5	89990148	89990149	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	5	89990148	89990149	TA	-	DEL	GPR98	NM_032119.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.7575_7576	p.I2526fs	0.154:0.184	NULL	HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
LOC100288406	0	genome.wustl.edu	37	12	92260	92260	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	12	92260	92260	G	C	SNP	LOC100288406	XM_002343141.1	human	genbank	58_37c	+1	model	missense	c.284	p.R95T	0.351	NULL	NULL	-	pseudogene
PIGQ	9091	genome.wustl.edu	37	16	624101	624101	+	Silent	SNP	G	G	A	rs61753370	byCluster;byFrequency;by1000genomes	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	16	624101	624101	G	A	SNP	PIGQ	NM_148920.1	human	genbank	58_37c	+1	reviewed	silent	c.27	p.T9	0.542	NULL	HMMPfam_Gpi1	-	no_errors
PJA2	9867	genome.wustl.edu	37	5	108698676	108698676	+	Missense_Mutation	SNP	T	T	C	rs139750867	unknown	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	5	108698676	108698676	T	C	SNP	PJA2	NM_014819.4	human	genbank	58_37c	-1	validated	missense	c.1517	p.N506S	1.000	NULL	HMMSmart_RING,PatternScan_N6_MTASE,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
RPS27L	51065	genome.wustl.edu	37	15	63448632	63448633	+	In_Frame_Ins	INS	-	-	TAC	novel	unknown	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	15	63448632	63448633	-	TAC	INS	RPS27L	NM_015920.3	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.95_94	p.F32in_frame_insCI	1.000:1.000	HMMPfam_Ribosomal_S27e,superfamily_Zn-binding ribosomal proteins	HMMPfam_Ribosomal_S27e,PatternScan_RIBOSOMAL_S27E,superfamily_Zn-binding ribosomal proteins	-	no_errors
TG	7038	genome.wustl.edu	37	8	133899093	133899093	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A03U-01B-21D-A10M-09	TCGA-AO-A03U-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1e0ecd57-5c7d-4495-874d-9e286c999c22	24b629ef-6829-4494-8843-9877a56303cf	8	133899093	133899093	A	G	SNP	TG	NM_003235.4	human	genbank	58_37c	+1	reviewed	silent	c.1476	p.R492	0.361	NULL	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_COesterase,HMMPfam_GCC2_GCC3,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases,superfamily_TNF receptor-like	-	no_errors
