Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
BMPR1B	658	genome.wustl.edu	37	4	96052584	96052584	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	4	96052584	96052584	C	T	SNP	BMPR1B	NM_001203.2	human	genbank	58_37c	+1	reviewed	silent	c.997	p.L333	1.000	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_Activin_recp,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Snake toxin-like	-	no_errors
C19orf41	126123	genome.wustl.edu	37	19	50661562	50661562	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	19	50661562	50661562	C	T	SNP	C19orf41	ENST00000377002	human	ensembl	58_37c	-1	known	missense	c.463	p.D155N	0.019	NULL	NULL	-	no_errors
CD5L	922	genome.wustl.edu	37	1	157805891	157805891	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	157805891	157805891	A	C	SNP	CD5L	NM_005894.2	human	genbank	58_37c	-1	validated	missense	c.110	p.V37G	1.000	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors
CPT1A	1374	genome.wustl.edu	37	11	68574941	68574941	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	68574941	68574941	G	A	SNP	CPT1A	NM_001876.3	human	genbank	58_37c	-1	reviewed	silent	c.447	p.I149	0.983	NULL	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases	-	no_errors
CSMD1	64478	genome.wustl.edu	37	8	2910130	2910130	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	8	2910130	2910130	G	T	SNP	CSMD1	NM_033225.5	human	genbank	58_37c	-1	validated	nonsense	c.7517	p.S2506*	0.987	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
CSMD1	64478	genome.wustl.edu	37	8	3245175	3245175	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	8	3245175	3245175	C	G	SNP	CSMD1	NM_033225.5	human	genbank	58_37c	-1	validated	missense	c.2626	p.D876H	1.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
DNAH11	8701	genome.wustl.edu	37	7	21784508	21784508	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	7	21784508	21784508	G	T	SNP	DNAH11	NM_003777.3	human	genbank	58_37c	+1	reviewed	silent	c.8358	p.L2786	0.836	NULL	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EID3	493861	genome.wustl.edu	37	12	104698208	104698208	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	12	104698208	104698208	G	A	SNP	EID3	NM_001008394.1	human	genbank	58_37c	+1	provisional	missense	c.496	p.E166K	0.002	HMMPfam_Nse4	HMMPfam_Nse4	-	no_errors
EXPH5	23086	genome.wustl.edu	37	11	108383532	108383532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	108383532	108383532	G	A	SNP	EXPH5	NM_015065.2	human	genbank	58_37c	-1	validated	missense	c.2702	p.P901L	0.001	NULL	NULL	-	no_errors
F5	2153	genome.wustl.edu	37	1	169511852	169511852	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	169511852	169511852	C	T	SNP	F5	NM_000130.4	human	genbank	58_37c	-1	reviewed	missense	c.2476	p.E826K	0.003	NULL	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_LSPR,HMMPfam_Cu-oxidase_3	-	no_errors
FLRT1	23769	genome.wustl.edu	37	11	63883862	63883862	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	63883862	63883862	C	T	SNP	FLRT1	NM_013280.4	human	genbank	58_37c	+1	reviewed	silent	c.123	p.L41	0.770	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMPfam_fn3,HMMSmart_SM00364,superfamily_L domain-like	-	no_errors
GPS2	2874	genome.wustl.edu	37	17	7217872	7217875	+	Frame_Shift_Del	DEL	CTTC	CTTC	-	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	CTTC	CTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	17	7217872	7217875	CTTC	-	DEL	GPS2	NM_004489.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.139_136	p.E46fs	1.000:0.999:1.000:1.000	NULL	NULL	-	no_errors
IL18RAP	8807	genome.wustl.edu	37	2	103040327	103040327	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	2	103040327	103040327	G	C	SNP	IL18RAP	NM_003853.2	human	genbank	58_37c	+1	reviewed	missense	c.127	p.V43L	0.020	NULL	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00409,superfamily_Immunoglobulin	-	no_errors
ITPR2	3709	genome.wustl.edu	37	12	26749818	26749818	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	12	26749818	26749818	C	T	SNP	ITPR2	NM_002223.2	human	genbank	58_37c	-1	validated	missense	c.4252	p.E1418K	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2	-	no_errors
LYSMD3	116068	genome.wustl.edu	37	5	89815239	89815251	+	Frame_Shift_Del	DEL	AGACCTAAGGGCA	AGACCTAAGGGCA	-	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	AGACCTAAGGGCA	AGACCTAAGGGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	5	89815239	89815251	AGACCTAAGGGCA	-	DEL	LYSMD3	NM_198273.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.318_306	p.F102fs	0.656:0.998:0.998:0.998:1.000:1.000:1.000:1.000:0.978:0.053:1.000:1.000:1.000	HMMSmart_SM00257	HMMSmart_SM00257,HMMPfam_LysM	-	no_errors
MAP3K15	389840	genome.wustl.edu	37	X	19478185	19478185	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	X	19478185	19478185	C	T	SNP	MAP3K15	ENST00000338883	human	ensembl	58_37c	-1	known	missense	c.806	p.R269Q	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MICALCL	84953	genome.wustl.edu	37	11	12316344	12316345	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	12316344	12316345	-	CTC	INS	MICALCL	NM_032867.2	human	genbank	58_37c	+1	validated	in_frame_ins	c.1366_1367	p.460in_frame_insP	0.004:0.006	NULL	NULL	-	no_errors
MORC4	79710	genome.wustl.edu	37	X	106229353	106229353	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	X	106229353	106229353	G	T	SNP	MORC4	NM_024657.4	human	genbank	58_37c	-1	reviewed	missense	c.386	p.S129Y	1.000	HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,HMMPfam_zf-CW	-	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1266662	1266662	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	1266662	1266662	C	G	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.8561	p.S2854W	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MYLK	4638	genome.wustl.edu	37	3	123444902	123444902	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	3	123444902	123444902	G	A	SNP	MYLK	NM_053025.3	human	genbank	58_37c	-1	reviewed	missense	c.1540	p.P514S	1.000	HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Immunoglobulin	-	no_errors
NEU2	4759	genome.wustl.edu	37	2	233899336	233899346	+	Frame_Shift_Del	DEL	AGCCACCTCCG	AGCCACCTCCG	-	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	AGCCACCTCCG	AGCCACCTCCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	2	233899336	233899346	AGCCACCTCCG	-	DEL	NEU2	NM_005383.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.712_722	p.H239fs	1.000:1.000:0.993:0.003:0.002:0.001:0.008:0.000:0.001:0.002:0.005	superfamily_Sialidase	superfamily_Sialidase	-	no_errors
NUMA1	4926	genome.wustl.edu	37	11	71717272	71717272	+	Missense_Mutation	SNP	G	G	A	rs141331520	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	71717272	71717272	G	A	SNP	NUMA1	NM_006185.2	human	genbank	58_37c	-1	validated	missense	c.5501	p.S1834L	1.000	NULL	superfamily_Prefoldin	-	no_errors
OR7G1	125962	genome.wustl.edu	37	19	9225564	9225564	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	19	9225564	9225564	C	T	SNP	OR7G1	NM_001005192.1	human	genbank	58_37c	-1	provisional	silent	c.876	p.L292	1.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PTEN	5728	genome.wustl.edu	37	10	89692780	89692780	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	10	89692780	89692780	T	A	SNP	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	nonsense	c.264	p.Y88*	1.000	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RAB39	54734	genome.wustl.edu	37	11	107833060	107833060	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	11	107833060	107833060	G	A	SNP	RAB39	NM_017516.1	human	genbank	58_37c	+1	provisional	missense	c.616	p.E206K	1.000	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RLF	6018	genome.wustl.edu	37	1	40701837	40701838	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	40701837	40701838	-	A	INS	RLF	NM_012421.3	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1463_1464	p.D489fs	1.000:0.996	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZBED1	9189	genome.wustl.edu	37	X	2408413	2408413	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	X	2408413	2408413	G	A	SNP	ZBED1	NM_004729.3	human	genbank	58_37c	-1	reviewed	silent	c.348	p.H116	0.869	NULL	HMMPfam_zf-BED,HMMSmart_ZnF_BED,HMMPfam_hATC	-	no_errors
ZNF683	257101	genome.wustl.edu	37	1	26688342	26688342	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0JA-01A-11W-A071-09	TCGA-AO-A0JA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0215d4f1-6697-4e8f-afc4-ff7c6439e56d	55ed9925-691d-43df-8472-2d6a52bc9068	1	26688342	26688342	G	T	SNP	ZNF683	NM_001114759.1	human	genbank	58_37c	-1	validated	missense	c.1315	p.Q439K	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
