Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTS9	0	genome.wustl.edu	37	3	64666930	64666930	+	Missense_Mutation	SNP	C	C	T	rs146464879	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	3	64666930	64666930	C	T	SNP	ADAMTS9	NM_182920.1	human	genbank	58_37c	-1	reviewed	missense	c.626	p.R209H	0.003	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_GON,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AGL	0	genome.wustl.edu	37	1	100350009	100350009	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	100350009	100350009	T	C	SNP	AGL	NM_000028.2	human	genbank	58_37c	+1	reviewed	splice_site	c.2546+2	e18+2	1.000	-	-	-	no_errors
BTBD7	0	genome.wustl.edu	37	14	93723509	93723509	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	14	93723509	93723509	C	T	SNP	BTBD7	ENST00000436095	human	ensembl	58_37c	-1	known	silent	c.1094	p.*365	0.013	NULL	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
C15orf44	0	genome.wustl.edu	37	15	65884055	65884055	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	15	65884055	65884055	C	T	SNP	C15orf44	NM_030800.1	human	genbank	58_37c	-1	predicted	missense	c.1001	p.G334E	1.000	NULL	superfamily_vWA-like	-	no_errors
C17orf85	0	genome.wustl.edu	37	17	3725313	3725313	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	17	3725313	3725313	C	G	SNP	C17orf85	NM_001114118.1	human	genbank	58_37c	-1	provisional	missense	c.830	p.S277T	1.000	NULL	HMMPfam_DUF2414	-	no_errors
CACNA1C	0	genome.wustl.edu	37	12	2602510	2602510	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	12	2602510	2602510	C	T	SNP	CACNA1C	NM_199460.2	human	genbank	58_37c	+1	reviewed	silent	c.1071	p.F357	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CACNA1D	0	genome.wustl.edu	37	3	53810978	53810978	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	3	53810978	53810978	T	A	SNP	CACNA1D	NM_000720.2	human	genbank	58_37c	+1	validated	missense	c.4642	p.C1548S	1.000	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_SSF81324	-	no_errors
CACNA1S	0	genome.wustl.edu	37	1	201038705	201038705	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	201038705	201038705	G	T	SNP	CACNA1S	NM_000069.2	human	genbank	58_37c	-1	reviewed	silent	c.2385	p.I795	0.951	superfamily_SSF81324	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_SSF81324	-	no_errors
CKAP2	0	genome.wustl.edu	37	13	53049138	53049138	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	13	53049138	53049138	G	T	SNP	CKAP2	NM_001098525.1	human	genbank	58_37c	+1	validated	missense	c.1914	p.L638F	0.963	NULL	NULL	-	no_errors
CNST	0	genome.wustl.edu	37	1	246805311	246805311	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	246805311	246805311	G	C	SNP	CNST	NM_152609.2	human	genbank	58_37c	+1	validated	missense	c.909	p.K303N	0.918	NULL	NULL	-	no_errors
CUL1	0	genome.wustl.edu	37	7	148457520	148457520	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	7	148457520	148457520	G	C	SNP	CUL1	NM_003592.2	human	genbank	58_37c	+1	validated	missense	c.721	p.E241Q	1.000	HMMPfam_Cullin,superfamily_Cullin repeat	"HMMPfam_Cullin,PatternScan_CULLIN_1,HMMSmart_SM00182,superfamily_Cullin homology domain,superfamily_Cullin repeat,HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
DNAH1	0	genome.wustl.edu	37	3	52365312	52365312	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	3	52365312	52365312	G	T	SNP	DNAH1	NM_015512.4	human	genbank	58_37c	+1	validated	silent	c.1020	p.G340	0.027	NULL	HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DSCAML1	0	genome.wustl.edu	37	11	117306505	117306505	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	11	117306505	117306505	T	C	SNP	DSCAML1	NM_020693.2	human	genbank	58_37c	-1	provisional	silent	c.4911	p.P1637	0.750	NULL	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ENSG00000231520	0	genome.wustl.edu	37	10	42380163	42380163	+	Missense_Mutation	SNP	C	C	G	rs180787759	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	10	42380163	42380163	C	G	SNP	ENSG00000231520	ENST00000429113	human	ensembl	58_37c	-1	known	missense	c.87	p.W29C	0.000	NULL	NULL	-	no_stop_codon
EPS8	0	genome.wustl.edu	37	12	15777330	15777330	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	12	15777330	15777330	G	A	SNP	EPS8	NM_004447.5	human	genbank	58_37c	-1	reviewed	nonsense	c.2056	p.Q686*	1.000	NULL	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMSmart_PTB,HMMPfam_PTB,superfamily_SSF50729	-	no_errors
FAM190A	0	genome.wustl.edu	37	4	91549368	91549368	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	4	91549368	91549368	G	C	SNP	FAM190A	NM_001145065.1	human	genbank	58_37c	+1	validated	missense	c.1917	p.K639N	1.000	NULL	NULL	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29623224	29623224	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	20	29623224	29623224	C	A	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	silent	c.36	p.V12	1.000	HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
GBP5	0	genome.wustl.edu	37	1	89729432	89729432	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	89729432	89729432	C	T	SNP	GBP5	NM_001134486.1	human	genbank	58_37c	-1	validated	missense	c.1349	p.R450Q	0.942	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168377261	168377261	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	6	168377261	168377261	T	C	SNP	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	silent	c.72	p.Q24	0.016	NULL	NULL	-	no_errors
HMOX2	0	genome.wustl.edu	37	16	4558020	4558020	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	16	4558020	4558020	G	A	SNP	HMOX2	NM_001127204.1	human	genbank	58_37c	+1	reviewed	missense	c.511	p.A171T	1.000	HMMPfam_Heme_oxygenase,superfamily_Heme oxygenase-like	HMMPfam_Heme_oxygenase,superfamily_Heme oxygenase-like,PatternScan_HEME_OXYGENASE	-	no_errors
LAMA2	0	genome.wustl.edu	37	6	129823915	129823915	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	6	129823915	129823915	C	T	SNP	LAMA2	NM_000426.3	human	genbank	58_37c	+1	reviewed	missense	c.8356	p.R2786C	1.000	HMMSmart_LamG,superfamily_ConA_like_lec_gl	HMMPfam_Laminin_B,HMMSmart_LamG,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF56399,superfamily_SSF57196	-	no_errors
LOC389873	0	genome.wustl.edu	37	X	72989770	72989770	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	X	72989770	72989770	G	A	SNP	LOC389873	XR_038740.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC645202	0	genome.wustl.edu	37	15	28595893	28595894	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	15	28595893	28595894	AT	-	DEL	LOC645202	XM_001724153.2	human	genbank	58_37c	-1	model	frame_shift_del	c.1217_1216	p.M406fs	0.611:0.619	NULL	NULL	-	no_errors
LOC646214	0	genome.wustl.edu	37	15	21936319	21936319	+	RNA	SNP	A	A	G	rs190175763	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	15	21936319	21936319	A	G	SNP	LOC646214	NR_027053.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.239	-	-	-	pseudogene
LOXL2	0	genome.wustl.edu	37	8	23217687	23217687	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	8	23217687	23217687	C	G	SNP	LOXL2	NM_002318.2	human	genbank	58_37c	-1	reviewed	missense	c.447	p.K149N	1.000	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor	HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,HMMSmart_SR,superfamily_Srcr_receptor,PatternScan_LYSYL_OXIDASE	-	no_errors
LRP8	0	genome.wustl.edu	37	1	53729901	53729901	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	53729901	53729901	C	T	SNP	LRP8	NM_004631.3	human	genbank	58_37c	-1	reviewed	missense	c.1595	p.R532H	0.058	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
MIRLET7G	0	genome.wustl.edu	37	3	52302332	52302332	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	3	52302332	52302332	G	C	SNP	MIRLET7G	ENST00000362280	human	ensembl	58_37c	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100643088	100643088	+	Missense_Mutation	SNP	A	A	G	rs145334771	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	7	100643088	100643088	A	G	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.9673	p.I3225V	0.000	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100648354	100648354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	7	100648354	100648354	C	T	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.14939	p.S4980L	0.210	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MYH6	0	genome.wustl.edu	37	14	23863422	23863422	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	14	23863422	23863422	G	A	SNP	MYH6	NM_002471.3	human	genbank	58_37c	-1	validated	missense	c.2540	p.T847M	1.000	NULL	HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OR2L13	0	genome.wustl.edu	37	1	248262902	248262902	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	248262902	248262902	C	A	SNP	OR2L13	NM_175911.2	human	genbank	58_37c	+1	provisional	silent	c.225	p.T75	0.001	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR5AK2	0	genome.wustl.edu	37	11	56756390	56756390	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	11	56756390	56756390	T	C	SNP	OR5AK2	NM_001005323.1	human	genbank	58_37c	+1	provisional	missense	c.2	p.M1T	0.933	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR5K2	0	genome.wustl.edu	37	3	98217306	98217306	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	3	98217306	98217306	G	A	SNP	OR5K2	NM_001004737.1	human	genbank	58_37c	+1	provisional	missense	c.782	p.R261K	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCDHGB1	0	genome.wustl.edu	37	5	140730085	140730085	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	5	140730085	140730085	G	A	SNP	PCDHGB1	NM_018922.2	human	genbank	58_37c	+1	reviewed	silent	c.258	p.R86	0.989	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	3	178928079	178928079	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1357	p.E453K	1.000	HMMPfam_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PPRC1	0	genome.wustl.edu	37	10	103899095	103899095	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	10	103899095	103899095	A	C	SNP	PPRC1	NM_015062.3	human	genbank	58_37c	+1	reviewed	missense	c.830	p.H277P	0.969	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
PTDSS2	0	genome.wustl.edu	37	11	489687	489687	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	11	489687	489687	G	A	SNP	PTDSS2	NM_030783.1	human	genbank	58_37c	+1	provisional	missense	c.1069	p.V357M	1.000	HMMPfam_PSS	HMMPfam_PSS	-	no_errors
RAB11A	0	genome.wustl.edu	37	15	66161954	66161954	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	15	66161954	66161954	C	T	SNP	RAB11A	NM_004663.3	human	genbank	58_37c	+1	reviewed	missense	c.31	p.L11F	1.000	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RALY	0	genome.wustl.edu	37	20	32661659	32661659	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	20	32661659	32661659	G	A	SNP	RALY	NM_016732.1	human	genbank	58_37c	+1	reviewed	missense	c.364	p.D122N	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RHPN2	0	genome.wustl.edu	37	19	33493752	33493752	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	19	33493752	33493752	G	A	SNP	RHPN2	NM_033103.4	human	genbank	58_37c	-1	reviewed	silent	c.915	p.F305	0.079	HMMPfam_BRO1	HMMPfam_HR1,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_BRO1,HMMSmart_Hr1,superfamily_PKN_effector	-	no_errors
RYR3	0	genome.wustl.edu	37	15	33858967	33858967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	15	33858967	33858967	G	A	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	missense	c.1235	p.R412Q	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SLC22A1	0	genome.wustl.edu	37	6	160543262	160543262	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	6	160543262	160543262	G	A	SNP	SLC22A1	NM_003057.2	human	genbank	58_37c	+1	reviewed	missense	c.295	p.A99T	0.306	NULL	PatternScan_SUGAR_TRANSPORT_1,HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC22A6	0	genome.wustl.edu	37	11	62751063	62751063	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	11	62751063	62751063	G	A	SNP	SLC22A6	NM_004790.3	human	genbank	58_37c	-1	reviewed	missense	c.574	p.R192W	1.000	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
THSD7A	0	genome.wustl.edu	37	7	11630106	11630106	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	7	11630106	11630106	A	T	SNP	THSD7A	NM_015204.2	human	genbank	58_37c	-1	validated	missense	c.1434	p.S478R	0.000	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	-	no_errors
THSD7B	0	genome.wustl.edu	37	2	138373750	138373750	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	2	138373750	138373750	C	T	SNP	THSD7B	NM_001080427.1	human	genbank	58_37c	+1	provisional	silent	c.3342	p.C1114	1.000	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	-	no_errors
TINAG	0	genome.wustl.edu	37	6	54214608	54214608	+	Missense_Mutation	SNP	C	C	T	rs35758529	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	6	54214608	54214608	C	T	SNP	TINAG	NM_014464.3	human	genbank	58_37c	+1	validated	missense	c.994	p.R332W	1.000	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases	PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C1,HMMSmart_SM00645,HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Cysteine proteinases	-	no_errors
TMEM71	0	genome.wustl.edu	37	8	133764157	133764157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	8	133764157	133764157	C	T	SNP	TMEM71	NM_144649.2	human	genbank	58_37c	-1	validated	missense	c.188	p.R63Q	1.000	NULL	NULL	-	no_errors
TNS3	0	genome.wustl.edu	37	7	47408046	47408046	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	7	47408046	47408046	G	C	SNP	TNS3	NM_022748.10	human	genbank	58_37c	-1	validated	missense	c.2197	p.P733A	0.003	NULL	HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,HMMSmart_SM00462,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTB,HMMPfam_PTEN_C2,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors
UBQLN3	0	genome.wustl.edu	37	11	5529582	5529582	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	11	5529582	5529582	T	G	SNP	UBQLN3	NM_017481.2	human	genbank	58_37c	-1	reviewed	missense	c.1207	p.I403L	0.606	NULL	HMMPfam_UBA,HMMPfam_ubiquitin,HMMSmart_UBQ,HMMSmart_STI1,superfamily_UBA_like,HMMSmart_UBA,PatternScan_UBIQUITIN_1,superfamily_SSF54236	-	no_errors
VWA3A	0	genome.wustl.edu	37	16	22122217	22122217	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	16	22122217	22122217	C	T	SNP	VWA3A	NM_173615.3	human	genbank	58_37c	+1	validated	silent	c.591	p.I197	0.692	superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	-	no_errors
ZCCHC11	0	genome.wustl.edu	37	1	52891167	52891167	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	52891167	52891167	C	T	SNP	ZCCHC11	NM_001009881.1	human	genbank	58_37c	-1	validated	missense	c.4724	p.R1575Q	1.000	NULL	HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_PAP_assoc,HMMPfam_NTP_transf_2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Retrovirus zinc finger-like domains,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain	-	no_errors
ZNF281	0	genome.wustl.edu	37	1	200377724	200377724	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	200377724	200377724	G	C	SNP	ZNF281	NM_012482.3	human	genbank	58_37c	-1	provisional	silent	c.1110	p.V370	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF642	0	genome.wustl.edu	37	1	40961166	40961166	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A0Y5-01A-11D-A14K-09	TCGA-AQ-A0Y5-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4aa80fbd-a337-49b6-9371-223cbcfbc85d	d116ee66-1d8f-4319-b8d6-be4213550093	1	40961166	40961166	G	A	SNP	ZNF642	NM_198494.2	human	genbank	58_37c	+1	validated	missense	c.1016	p.R339H	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
