Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AARS	16	genome.wustl.edu	37	16	70296374	70296374	+	Missense_Mutation	SNP	C	C	A	rs143844046	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	70296374	70296374	C	A	SNP	AARS	NM_001605.2	human	genbank	58_37c	-1	reviewed	missense	c.1546	p.V516L	0.999	HMMPfam_tRNA-synt_2c	HMMPfam_DHHA1,HMMPfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA-synt_2c,superfamily_SSF55681	-	no_errors
ACCN5	51802	genome.wustl.edu	37	4	156764876	156764876	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	4	156764876	156764876	G	A	SNP	ACCN5	NM_017419.2	human	genbank	58_37c	-1	reviewed	missense	c.818	p.S273L	0.267	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	no_errors
ADAM33	80332	genome.wustl.edu	37	20	3649962	3649962	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	20	3649962	3649962	G	C	SNP	ADAM33	NM_025220.2	human	genbank	58_37c	-1	reviewed	silent	c.2388	p.V796	0.009	NULL	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AKR1C3	8644	genome.wustl.edu	37	10	5141532	5141532	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	10	5141532	5141532	G	T	SNP	AKR1C3	NM_003739.4	human	genbank	58_37c	+1	reviewed	missense	c.461	p.C154F	0.999	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase,PatternScan_ALDOKETO_REDUCTASE_2	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3,PatternScan_ALDOKETO_REDUCTASE_1	-	no_errors
AMPD1	270	genome.wustl.edu	37	1	115236070	115236070	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	115236070	115236070	T	A	SNP	AMPD1	NM_000036.2	human	genbank	58_37c	-1	reviewed	splice_site	c.23-2	e2-2	1.000	-	-	-	no_errors
ARHGAP29	9411	genome.wustl.edu	37	1	94639535	94639535	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	94639535	94639535	C	A	SNP	ARHGAP29	NM_004815.3	human	genbank	58_37c	-1	validated	missense	c.3676	p.D1226Y	0.002	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_GTPase activation domain GAP,superfamily_Cysteine-rich domain	-	no_errors
ASH1L	55870	genome.wustl.edu	37	1	155313175	155313175	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	155313175	155313175	G	A	SNP	ASH1L	NM_018489.2	human	genbank	58_37c	-1	reviewed	silent	c.8223	p.L2741	0.818	HMMPfam_BAH,HMMSmart_SM00439	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_SET,HMMSmart_SM00317,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMSmart_SM00570,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00384,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
C8orf31	286122	genome.wustl.edu	37	8	144126108	144126108	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	8	144126108	144126108	G	C	SNP	C8orf31	NM_173687.2	human	genbank	58_37c	+1	predicted	missense	c.229	p.D77H	0.000	NULL	NULL	-	no_errors
CACNA1B	774	genome.wustl.edu	37	9	140970313	140970313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	9	140970313	140970313	C	T	SNP	CACNA1B	NM_000718.2	human	genbank	58_37c	+1	validated	missense	c.4900	p.R1634C	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CDCA2	157313	genome.wustl.edu	37	8	25365051	25365051	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	8	25365051	25365051	C	G	SNP	CDCA2	NM_152562.2	human	genbank	58_37c	+1	validated	missense	c.2869	p.P957A	0.000	NULL	NULL	-	no_errors
CDKL5	6792	genome.wustl.edu	37	X	18631363	18631363	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	X	18631363	18631363	C	A	SNP	CDKL5	NM_001037343.1	human	genbank	58_37c	+1	reviewed	missense	c.2244	p.N748K	1.000	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CENPE	1062	genome.wustl.edu	37	4	104098112	104098112	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	4	104098112	104098112	T	G	SNP	CENPE	NM_001813.2	human	genbank	58_37c	-1	validated	missense	c.1334	p.N445T	0.000	NULL	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CENPO	79172	genome.wustl.edu	37	2	25040582	25040582	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	2	25040582	25040582	T	A	SNP	CENPO	NM_024322.1	human	genbank	58_37c	+1	provisional	silent	c.810	p.S270	0.397	NULL	HMMPfam_Cenp-O	-	no_errors
CHD9	80205	genome.wustl.edu	37	16	53338403	53338403	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	53338403	53338403	G	C	SNP	CHD9	NM_025134.4	human	genbank	58_37c	+1	validated	missense	c.6485	p.G2162A	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_CHROMO,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_BRK,HMMSmart_BRK,HMMSmart_DEXDc,superfamily_Chromodomain-like,superfamily_SSF52540	-	no_errors
COL29A1	256076	genome.wustl.edu	37	3	130098667	130098667	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	3	130098667	130098667	G	A	SNP	COL6A5	NM_153264.5	human	genbank	58_37c	+1	validated	silent	c.1074	p.A358	0.000	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Collagen,superfamily_SSF53300	-	no_errors
DCHS2	54798	genome.wustl.edu	37	4	155287566	155287566	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	4	155287566	155287566	G	-	DEL	DCHS2	NM_017639.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.490	p.R164fs	1.000	HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
ERI2	112479	genome.wustl.edu	37	16	20812611	20812611	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	20812611	20812611	T	A	SNP	ERI2	NM_001142725.1	human	genbank	58_37c	-1	validated	missense	c.374	p.Q125L	1.000	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T	HMMSmart_SM00479,HMMPfam_zf-GRF,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T	-	no_errors
ERN2	10595	genome.wustl.edu	37	16	23711935	23711935	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	23711935	23711935	A	T	SNP	ERN2	NM_033266.3	human	genbank	58_37c	-1	validated	missense	c.1594	p.S532T	0.002	NULL	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_PQQ,HMMSmart_SM00580,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like,HMMPfam_Pkinase,HMMSmart_SM00564	-	no_errors
HPS3	84343	genome.wustl.edu	37	3	148875176	148875176	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	3	148875176	148875176	A	C	SNP	HPS3	NM_032383.3	human	genbank	58_37c	+1	reviewed	missense	c.1549	p.S517R	1.000	NULL	NULL	-	no_errors
HSPA2	3306	genome.wustl.edu	37	14	65007625	65007625	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	14	65007625	65007625	G	T	SNP	HSPA2	NM_021979.3	human	genbank	58_37c	+1	validated	missense	c.58	p.G20W	1.000	HMMPfam_HSP70,superfamily_SSF53067	HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934,superfamily_SSF53067	-	no_errors
LIPG	9388	genome.wustl.edu	37	18	47093896	47093896	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	18	47093896	47093896	G	C	SNP	LIPG	NM_006033.2	human	genbank	58_37c	+1	reviewed	missense	c.364	p.D122H	1.000	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	-	no_errors
LOC100289653	0	genome.wustl.edu	37	6	87607052	87607052	+	Missense_Mutation	SNP	G	G	A	rs61741606	byFrequency	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	6	87607052	87607052	G	A	SNP	LOC100289653	XM_002342648.1	human	genbank	58_37c	+1	model	missense	c.217	p.E73K	0.837	NULL	superfamily_PH domain-like	-	no_errors
NCR1	9437	genome.wustl.edu	37	19	55417945	55417945	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	19	55417945	55417945	G	A	SNP	NCR1	NM_004829.5	human	genbank	58_37c	+1	validated	silent	c.135	p.V45	0.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00409,superfamily_Immunoglobulin	-	no_errors
PCDHB13	56123	genome.wustl.edu	37	5	140595375	140595375	+	Silent	SNP	C	C	T	rs77651135	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	5	140595375	140595375	C	T	SNP	PCDHB13	NM_018933.2	human	genbank	58_37c	+1	reviewed	silent	c.1680	p.F560	0.022	superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PIGQ	9091	genome.wustl.edu	37	16	625917	625917	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	625917	625917	C	A	SNP	PIGQ	NM_148920.1	human	genbank	58_37c	+1	reviewed	missense	c.768	p.H256Q	0.998	NULL	HMMPfam_Gpi1	-	no_errors
PIK3C2B	5287	genome.wustl.edu	37	1	204408104	204408104	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	204408104	204408104	A	G	SNP	PIK3C2B	NM_002646.3	human	genbank	58_37c	-1	reviewed	missense	c.3475	p.W1159R	1.000	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI3K_rbd,HMMSmart_SM00144,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_PI3Ka,HMMSmart_SM00145,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_PI3K_C2,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_Ubiquitin-like	-	no_errors
PRSS23	11098	genome.wustl.edu	37	11	86519666	86519667	+	In_Frame_Ins	INS	-	-	CAGCAG	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	11	86519666	86519667	-	CAGCAG	INS	PRSS23	NM_007173.4	human	genbank	58_37c	+1	validated	in_frame_ins	c.981_982	p.330in_frame_insQQ	0.969:0.991	superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS	-	no_errors
RAB1A	5861	genome.wustl.edu	37	2	65315732	65315732	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	2	65315732	65315732	C	G	SNP	RAB1A	NM_004161.4	human	genbank	58_37c	-1	reviewed	missense	c.513	p.E171D	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RBM12B	389677	genome.wustl.edu	37	8	94748065	94748065	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	8	94748065	94748065	G	A	SNP	RBM12B	NM_203390.2	human	genbank	58_37c	-1	validated	nonsense	c.574	p.R192*	0.998	HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RCAN3	11123	genome.wustl.edu	37	1	24859683	24859683	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	24859683	24859683	C	T	SNP	RCAN3	NM_013441.2	human	genbank	58_37c	+1	validated	silent	c.480	p.S160	0.082	HMMPfam_Calcipressin	HMMPfam_Calcipressin	-	no_errors
RGS20	8601	genome.wustl.edu	37	8	54791869	54791869	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	8	54791869	54791869	G	A	SNP	RGS20	NM_170587.2	human	genbank	58_37c	+1	validated	missense	c.217	p.G73S	0.001	NULL	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS	-	no_errors
SELL	6402	genome.wustl.edu	37	1	169673765	169673765	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	169673765	169673765	T	C	SNP	SELL	NM_000655.4	human	genbank	58_37c	-1	reviewed	missense	c.710	p.E237G	0.000	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_Lectin_C,HMMSmart_CLECT,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement_control_module,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF57196	-	no_errors
SELPLG	6404	genome.wustl.edu	37	12	109017607	109017607	+	Silent	SNP	C	C	T	rs141750417	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	12	109017607	109017607	C	T	SNP	SELPLG	NM_003006.3	human	genbank	58_37c	-1	reviewed	silent	c.447	p.T149	0.000	NULL	NULL	-	no_errors
SERINC1	57515	genome.wustl.edu	37	6	122775305	122775305	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	6	122775305	122775305	A	G	SNP	SERINC1	NM_020755.2	human	genbank	58_37c	-1	provisional	missense	c.442	p.F148L	1.000	HMMPfam_Serinc	HMMPfam_Serinc	-	no_errors
SLITRK1	114798	genome.wustl.edu	37	13	84454496	84454496	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	13	84454496	84454496	G	C	SNP	SLITRK1	NM_052910.1	human	genbank	58_37c	-1	reviewed	missense	c.1147	p.R383G	0.996	superfamily_SSF52058	HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
SMC6	79677	genome.wustl.edu	37	2	17902510	17902510	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	2	17902510	17902510	G	A	SNP	SMC6	NM_001142286.1	human	genbank	58_37c	-1	validated	missense	c.745	p.R249C	1.000	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SUB1	10923	genome.wustl.edu	37	5	32601185	32601185	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	5	32601185	32601185	C	T	SNP	SUB1	NM_006713.3	human	genbank	58_37c	+1	validated	silent	c.379	p.L127	1.000	superfamily_ssDNA-binding transcriptional regulator domain	HMMPfam_PC4,superfamily_ssDNA-binding transcriptional regulator domain	-	no_errors
SYT9	143425	genome.wustl.edu	37	11	7335088	7335088	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	11	7335088	7335088	C	A	SNP	SYT9	NM_175733.3	human	genbank	58_37c	+1	validated	silent	c.960	p.G320	1.000	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
TNXB	7148	genome.wustl.edu	37	6	32063896	32063896	+	Silent	SNP	G	G	A	rs150780601	by1000genomes	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	6	32063896	32063896	G	A	SNP	TNXB	NM_019105.6	human	genbank	58_37c	-1	reviewed	silent	c.1734	p.D578	0.003	HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00181,superfamily_Fibronectin type III,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578257	7578257	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	17	7578257	7578257	C	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.592	p.E198*	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPR	7175	genome.wustl.edu	37	1	186325525	186325525	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	186325525	186325525	C	T	SNP	TPR	NM_003292.2	human	genbank	58_37c	-1	reviewed	missense	c.1781	p.R594H	1.000	NULL	superfamily_Prefoldin,HMMPfam_TPR_MLP1_2	-	no_errors
TSC2	7249	genome.wustl.edu	37	16	2136343	2136343	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	2136343	2136343	C	A	SNP	TSC2	NM_000548.3	human	genbank	58_37c	+1	reviewed	silent	c.4812	p.G1604	0.994	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)	HMMPfam_Rap_GAP,superfamily_ARM repeat,HMMPfam_Tuberin,superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
UBR2	23304	genome.wustl.edu	37	6	42629951	42629951	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	6	42629951	42629951	G	A	SNP	UBR2	NM_015255.2	human	genbank	58_37c	+1	reviewed	missense	c.3472	p.D1158N	0.994	NULL	PatternScan_RCC1_2,PatternScan_LIPOCALIN,HMMPfam_zf-UBR,HMMPfam_ClpS,HMMSmart_SM00396,superfamily_ClpS-like	-	no_errors
USP21	27005	genome.wustl.edu	37	1	161134356	161134356	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	1	161134356	161134356	T	-	DEL	USP21	NM_001014443.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1338	p.S446fs	1.000	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
WWP2	11060	genome.wustl.edu	37	16	69922069	69922069	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	16	69922069	69922069	A	C	SNP	WWP2	NM_007014.3	human	genbank	58_37c	+1	reviewed	silent	c.831	p.T277	0.016	NULL	HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB	-	no_errors
ZNF473	25888	genome.wustl.edu	37	19	50548416	50548416	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9253ecc-cfac-4cc5-8dab-1e502d34d103	5554cf4e-b4a0-4938-b5d4-852a5bca8de7	19	50548416	50548416	A	T	SNP	ZNF473	NM_001006656.1	human	genbank	58_37c	+1	validated	missense	c.716	p.H239L	0.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
