Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA6	0	genome.wustl.edu	37	17	67080498	67080498	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	67080498	67080498	T	C	SNP	ABCA6	NM_080284.2	human	genbank	58_37c	-1	reviewed	splice_site	c.4261-2	e33-2	1.000	-	-	-	no_errors
ABCA7	0	genome.wustl.edu	37	19	1061826	1061827	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	1061826	1061827	TT	-	DEL	ABCA7	NM_019112.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.5509_5510	p.F1837fs	0.995:1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCC11	0	genome.wustl.edu	37	16	48245083	48245083	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	16	48245083	48245083	A	T	SNP	ABCC11	NM_032583.3	human	genbank	58_37c	-1	reviewed	missense	c.1384	p.F462I	0.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACAT1	0	genome.wustl.edu	37	11	108017053	108017053	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	108017053	108017053	A	C	SNP	ACAT1	NM_000019.3	human	genbank	58_37c	+1	reviewed	missense	c.1130	p.N377T	0.998	HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,superfamily_Thiolase-like	HMMPfam_Thiolase_N,HMMPfam_Thiolase_C,PatternScan_THIOLASE_1,PatternScan_THIOLASE_3,PatternScan_THIOLASE_2,superfamily_Thiolase-like	-	no_errors
ACSM4	0	genome.wustl.edu	37	12	7473395	7473395	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	7473395	7473395	T	G	SNP	ACSM4	NM_001080454.1	human	genbank	58_37c	+1	provisional	silent	c.996	p.L332	0.983	HMMPfam_AMP-binding,superfamily_SSF56801	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_SSF56801	-	no_errors
ACTN2	0	genome.wustl.edu	37	1	236918429	236918429	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	236918429	236918429	G	T	SNP	ACTN2	NM_001103.2	human	genbank	58_37c	+1	reviewed	silent	c.2085	p.L695	1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_efhand_Ca_insen,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,HMMPfam_efhand,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
ADAM33	0	genome.wustl.edu	37	20	3655440	3655440	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	3655440	3655440	G	C	SNP	ADAM33	NM_025220.2	human	genbank	58_37c	-1	reviewed	silent	c.390	p.L130	1.000	HMMPfam_Pep_M12B_propep	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADAMTSL3	0	genome.wustl.edu	37	15	84568455	84568455	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	84568455	84568455	G	C	SNP	ADAMTSL3	NM_207517.2	human	genbank	58_37c	+1	validated	missense	c.1672	p.E558Q	1.000	NULL	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ADCY2	0	genome.wustl.edu	37	5	7709446	7709446	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	7709446	7709446	A	G	SNP	ADCY2	NM_020546.2	human	genbank	58_37c	+1	reviewed	silent	c.1524	p.A508	0.588	HMMPfam_DUF1053	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
AHNAK2	0	genome.wustl.edu	37	14	105412163	105412163	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	14	105412163	105412163	C	G	SNP	AHNAK2	NM_138420.2	human	genbank	58_37c	-1	validated	missense	c.9625	p.V3209L	0.000	NULL	HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
ANK3	0	genome.wustl.edu	37	10	61831529	61831529	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	61831529	61831529	G	C	SNP	ANK3	NM_020987.2	human	genbank	58_37c	-1	reviewed	missense	c.9110	p.P3037R	0.934	NULL	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like	-	no_errors
ANKRD19	0	genome.wustl.edu	37	9	95599746	95599746	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	95599746	95599746	C	T	SNP	ANKRD19	NR_026868.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.252	-	-	-	pseudogene
AP4E1	0	genome.wustl.edu	37	15	51233946	51233946	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	51233946	51233946	C	T	SNP	AP4E1	NM_007347.3	human	genbank	58_37c	+1	validated	missense	c.1150	p.H384Y	1.000	HMMPfam_Adaptin_N,superfamily_ARM-type_fold	HMMPfam_Adaptin_N,HMMPfam_Coatamer_beta_C,superfamily_ARM-type_fold	-	no_errors
ARAP2	0	genome.wustl.edu	37	4	36130231	36130231	+	Silent	SNP	C	A	A	rs144887229	byFrequency	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	36130231	36130231	C	A	SNP	ARAP2	NM_015230.2	human	genbank	58_37c	-1	reviewed	silent	c.3564	p.V1188	0.364	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	HMMPfam_RA,HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_SAM/Pointed domain,superfamily_PH domain-like	-	no_errors
ARAP3	0	genome.wustl.edu	37	5	141051281	141051281	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	141051281	141051281	G	T	SNP	ARAP3	NM_022481.5	human	genbank	58_37c	-1	reviewed	missense	c.1710	p.F570L	1.000	HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP	HMMPfam_RA,HMMPfam_RhoGAP,HMMSmart_RhoGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP,HMMSmart_SAM,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,superfamily_SAM_homology,HMMPfam_SAM_2,superfamily_SSF50729	-	no_errors
ARHGEF17	0	genome.wustl.edu	37	11	73020375	73020376	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	73020375	73020376	-	CTC	INS	ARHGEF17	NM_014786.3	human	genbank	58_37c	+1	validated	in_frame_ins	c.692_693	p.235in_frame_insS	0.998:1.000	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_PH domain-like	-	no_errors
ASTN1	0	genome.wustl.edu	37	1	177001636	177001636	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	177001636	177001636	G	A	SNP	ASTN1	NM_004319.1	human	genbank	58_37c	-1	validated	missense	c.821	p.S274F	1.000	NULL	HMMSmart_MACPF,HMMSmart_FN3,HMMSmart_EGF,superfamily_FN_III-like	-	no_errors
BAAT	0	genome.wustl.edu	37	9	104125223	104125240	+	In_Frame_Del	DEL	TAGGTAAATAGCCATAGA	TAGGTAAATAGCCATAGA	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	TAGGTAAATAGCCATAGA	TAGGTAAATAGCCATAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	104125223	104125240	TAGGTAAATAGCCATAGA	-	DEL	BAAT	NM_001127610.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.744_727	p.SMAIYL243in_frame_del	0.990:0.998:0.996:0.362:0.299:0.227:0.209:0.132:0.071:0.100:0.955:1.000:1.000:1.000:0.981:0.869:0.909:0.805	HMMPfam_BAAT_C,superfamily_SSF53474	HMMPfam_Bile_Hydr_Trans,HMMPfam_BAAT_C,superfamily_SSF53474	-	no_errors
BAI3	0	genome.wustl.edu	37	6	70071303	70071303	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	70071303	70071303	C	A	SNP	BAI3	NM_001704.2	human	genbank	58_37c	+1	reviewed	missense	c.4138	p.P1380T	1.000	NULL	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
BIN2	0	genome.wustl.edu	37	12	51685681	51685681	+	Silent	SNP	C	C	T	rs113931281	byFrequency	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	51685681	51685681	C	T	SNP	BIN2	NM_016293.2	human	genbank	58_37c	-1	validated	silent	c.1209	p.K403	0.002	NULL	HMMPfam_BAR,HMMSmart_SM00721	-	no_errors
BIRC6	0	genome.wustl.edu	37	2	32654312	32654312	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	32654312	32654312	T	C	SNP	BIRC6	NM_016252.3	human	genbank	58_37c	+1	reviewed	missense	c.2971	p.S991P	0.980	NULL	HMMPfam_UQ_con,HMMSmart_SM00212,HMMPfam_BIR,HMMSmart_SM00238,superfamily_Galactose-binding domain-like,superfamily_UBC-like,superfamily_Inhibitor of apoptosis (IAP) repeat	-	no_errors
BRSK2	0	genome.wustl.edu	37	11	1464595	1464595	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	1464595	1464595	G	T	SNP	BRSK2	NM_003957.2	human	genbank	58_37c	+1	validated	missense	c.595	p.V199L	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
C10orf68	0	genome.wustl.edu	37	10	33000568	33000568	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	33000568	33000568	G	C	SNP	C10orf68	NM_024688.2	human	genbank	58_37c	+1	validated	missense	c.400	p.E134Q	0.001	NULL	NULL	-	no_errors
C15orf23	0	genome.wustl.edu	37	15	40675104	40675104	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	40675104	40675104	A	T	SNP	C15orf23	NM_033286.3	human	genbank	58_37c	+1	validated	missense	c.68	p.D23V	0.000	NULL	NULL	-	no_errors
CAPN2	0	genome.wustl.edu	37	1	223934702	223934702	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	223934702	223934702	C	G	SNP	CAPN2	NM_001748.4	human	genbank	58_37c	+1	reviewed	missense	c.564	p.I188M	1.000	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases	PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_SM00230,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III),PatternScan_EF_HAND_1,superfamily_EF-hand,superfamily_Cysteine proteinases	-	no_errors
CASC1	0	genome.wustl.edu	37	12	25311497	25311497	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	25311497	25311497	T	C	SNP	CASC1	NM_018272.3	human	genbank	58_37c	-1	validated	missense	c.107	p.E36G	1.000	NULL	NULL	-	no_errors
CCDC135	0	genome.wustl.edu	37	16	57741527	57741527	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	16	57741527	57741527	C	G	SNP	CCDC135	NM_032269.5	human	genbank	58_37c	+1	validated	missense	c.1014	p.I338M	0.008	NULL	NULL	-	no_errors
CCDC66	0	genome.wustl.edu	37	3	56591278	56591279	+	Frame_Shift_Ins	INS	-	-	GGGGTAAGCA	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	56591278	56591279	-	GGGGTAAGCA	INS	CCDC66	NM_001141947.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.8_9	p.D5fs	1.000:1.000	NULL	NULL	-	no_errors
CDC42BPG	0	genome.wustl.edu	37	11	64606639	64606639	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	64606639	64606639	C	A	SNP	CDC42BPG	NM_017525.2	human	genbank	58_37c	-1	validated	nonsense	c.742	p.E248*	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_PBD,HMMSmart_SM00133,HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_DMPK_coil,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors
CEACAM5	0	genome.wustl.edu	37	19	42221424	42221424	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	42221424	42221424	G	A	SNP	CEACAM5	NM_004363.2	human	genbank	58_37c	+1	validated	missense	c.1009	p.D337N	0.000	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
CELSR1	0	genome.wustl.edu	37	22	46790160	46790160	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	22	46790160	46790160	C	T	SNP	CELSR1	NM_014246.1	human	genbank	58_37c	-1	reviewed	splice_site	c.5844-1	e14-1	1.000	-	-	-	no_errors
CHADL	0	genome.wustl.edu	37	22	41635564	41635564	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	22	41635564	41635564	G	A	SNP	CHADL	ENST00000417999	human	ensembl	58_37c	-1	known	missense	c.62	p.P21L	0.982	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CHD5	0	genome.wustl.edu	37	1	6181593	6181593	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	6181593	6181593	G	T	SNP	CHD5	NM_015557.1	human	genbank	58_37c	-1	provisional	missense	c.4740	p.D1580E	0.648	NULL	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_CHROMO,PatternScan_CHROMO_1,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_RING,HMMSmart_PHD,PatternScan_DEAH_ATP_HELICASE,HMMPfam_DUF1086,HMMPfam_DUF1087,superfamily_FYVE_PHD_ZnF,HMMPfam_CHDCT2,HMMPfam_CHDNT,HMMSmart_DEXDc,superfamily_Chromodomain-like,HMMPfam_PHD,superfamily_SSF52540	-	no_errors
CMAS	0	genome.wustl.edu	37	12	22214246	22214246	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	22214246	22214246	G	T	SNP	CMAS	NM_018686.3	human	genbank	58_37c	+1	reviewed	nonsense	c.820	p.E274*	1.000	HMMPfam_CTP_transf_3,superfamily_HAD-like	HMMPfam_CTP_transf_3,PatternScan_B_KETOACYL_SYNTHASE,superfamily_Nucleotide-diphospho-sugar transferases,superfamily_HAD-like	-	no_errors
COL22A1	0	genome.wustl.edu	37	8	139890242	139890242	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	8	139890242	139890242	G	T	SNP	COL22A1	NM_152888.1	human	genbank	58_37c	-1	validated	missense	c.409	p.P137T	1.000	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like	-	no_errors
CPN2	0	genome.wustl.edu	37	3	194063051	194063051	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	194063051	194063051	G	A	SNP	CPN2	NM_001080513.2	human	genbank	58_37c	-1	validated	silent	c.381	p.T127	0.656	HMMSmart_SM00369,superfamily_RNI-like	HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like	-	no_errors
CTR9	0	genome.wustl.edu	37	11	10792118	10792118	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	10792118	10792118	G	A	SNP	CTR9	NM_014633.3	human	genbank	58_37c	+1	provisional	missense	c.2311	p.D771N	1.000	NULL	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
CUL7	0	genome.wustl.edu	37	6	43018922	43018940	+	Frame_Shift_Del	DEL	GCTCACATCTGCCAGCTGA	GCTCACATCTGCCAGCTGA	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	GCTCACATCTGCCAGCTGA	GCTCACATCTGCCAGCTGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	43018922	43018940	GCTCACATCTGCCAGCTGA	-	DEL	CUL7	NM_014780.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1017_999	p.L335fs	0.005:0.000:0.000:0.000:0.001:0.005:0.001:0.001:0.002:0.000:0.000:0.000:0.000:0.000:0.000:0.005:0.081:0.971:0.978	NULL	HMMPfam_Cullin,HMMPfam_APC10,superfamily_Gal_bind_like,PatternScan_CULLIN_1,superfamily_Cullin_homology,superfamily_SSF46785	-	no_errors
CYP26B1	0	genome.wustl.edu	37	2	72360334	72360334	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	72360334	72360334	G	T	SNP	CYP26B1	NM_019885.2	human	genbank	58_37c	-1	reviewed	missense	c.964	p.L322M	1.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DALRD3	0	genome.wustl.edu	37	3	49054878	49054878	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	49054878	49054878	G	A	SNP	DALRD3	NM_001009996.1	human	genbank	58_37c	-1	validated	missense	c.787	p.H263Y	0.000	NULL	HMMPfam_DALR_1,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	-	no_errors
DCUN1D1	0	genome.wustl.edu	37	3	182665361	182665361	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	182665361	182665361	C	T	SNP	DCUN1D1	NM_020640.2	human	genbank	58_37c	-1	validated	missense	c.580	p.D194N	1.000	HMMPfam_DUF298	HMMPfam_DUF298,superfamily_UBA-like	-	no_errors
DNAJA4	0	genome.wustl.edu	37	15	78566657	78566657	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	78566657	78566657	C	T	SNP	DNAJA4	NM_018602.3	human	genbank	58_37c	+1	validated	silent	c.624	p.I208	0.000	HMMPfam_DnaJ_CXXCXGXG,superfamily_HSP_DnaJ_cys-rich,superfamily_HSP40_DnaJ_pep	HMMPfam_DnaJ_CXXCXGXG,superfamily_HSP_DnaJ_cys-rich,HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,HMMPfam_DnaJ_C,superfamily_HSP40_DnaJ_pep,PatternScan_DNAJ_1	-	no_errors
DOM3Z	0	genome.wustl.edu	37	6	31937797	31937797	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	31937797	31937797	C	T	SNP	DOM3Z	NM_005510.3	human	genbank	58_37c	-1	reviewed	missense	c.1048	p.V350I	0.996	NULL	HMMPfam_RAI1	-	no_errors
DPYSL5	0	genome.wustl.edu	37	2	27165483	27165483	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	27165483	27165483	G	A	SNP	DPYSL5	NM_020134.3	human	genbank	58_37c	+1	validated	silent	c.1305	p.V435	0.754	superfamily_Metalo_hydrolase	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556	-	no_errors
EFEMP2	0	genome.wustl.edu	37	11	65638053	65638053	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	65638053	65638053	C	G	SNP	EFEMP2	NM_016938.3	human	genbank	58_37c	-1	reviewed	missense	c.444	p.Q148H	1.000	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
ENKUR	0	genome.wustl.edu	37	10	25284628	25284628	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	25284628	25284628	C	T	SNP	ENKUR	NM_145010.2	human	genbank	58_37c	-1	provisional	missense	c.394	p.D132N	1.000	NULL	NULL	-	no_errors
ENSG00000198888	0	genome.wustl.edu	37	MT	4226	4226	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	MT	4226	4226	T	C	SNP	ENSG00000198888	ENST00000361390	human	ensembl	58_37c	+1	known	missense	c.920	p.M307T	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_stop_codon:mismatch_between_exon_seq_and_reference
ENSG00000214391	0	genome.wustl.edu	37	11	90016800	90016800	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	90016800	90016800	A	G	SNP	ENSG00000214391	ENST00000318973	human	ensembl	58_37c	+1	known	silent	c.975	p.K325	1.000	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	HMMPfam_Tubulin,superfamily_Tub_FtsZ_C,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin_FtsZ	-	no_stop_codon
ENSG00000245406	0	genome.wustl.edu	37	12	49412498	49412498	+	RNA	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	49412498	49412498	C	A	SNP	ENSG00000245406	ENST00000499273	human	ensembl	58_37c	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
ESCO2	0	genome.wustl.edu	37	8	27634128	27634128	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	8	27634128	27634128	G	C	SNP	ESCO2	NM_001017420.2	human	genbank	58_37c	+1	reviewed	silent	c.303	p.L101	0.993	NULL	NULL	-	no_errors
ESPL1	0	genome.wustl.edu	37	12	53676930	53676930	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	53676930	53676930	A	G	SNP	ESPL1	NM_012291.4	human	genbank	58_37c	+1	validated	missense	c.2809	p.I937V	0.998	NULL	HMMPfam_Peptidase_C50	-	no_errors
ESPNP	0	genome.wustl.edu	37	1	17017759	17017759	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	17017759	17017759	G	C	SNP	ESPNP	NR_026567.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
ETV3	0	genome.wustl.edu	37	1	157095097	157095097	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	157095097	157095097	C	T	SNP	ETV3	NM_001145312.1	human	genbank	58_37c	-1	validated	missense	c.1075	p.V359I	0.351	NULL	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
EVC2	0	genome.wustl.edu	37	4	5624640	5624640	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	5624640	5624640	G	A	SNP	EVC2	NM_147127.4	human	genbank	58_37c	-1	reviewed	nonsense	c.2125	p.Q709*	0.838	NULL	NULL	-	no_errors
F2	0	genome.wustl.edu	37	11	46748272	46748282	+	Frame_Shift_Del	DEL	CGACCTCTGTT	CGACCTCTGTT	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	CGACCTCTGTT	CGACCTCTGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	46748272	46748282	CGACCTCTGTT	-	DEL	F2	NM_000506.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1015_1025	p.P340fs	0.998:1.000:0.981:1.000:0.999:0.873:0.960:1.000:0.999:1.000:1.000	HMMPfam_Thrombin_light	HMMPfam_Kringle,HMMSmart_KR,HMMPfam_Gla,HMMSmart_GLA,PatternScan_GLA_1,superfamily_VitK_dep_GLA,HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,superfamily_Kringle-like,PatternScan_KRINGLE_1,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,HMMPfam_Thrombin_light	-	no_errors
F5	0	genome.wustl.edu	37	1	169498986	169498986	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	169498986	169498986	C	G	SNP	F5	NM_000130.4	human	genbank	58_37c	-1	reviewed	missense	c.5279	p.S1760T	0.991	superfamily_Cupredoxins	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_LSPR,HMMPfam_Cu-oxidase_3	-	no_errors
FAM65A	0	genome.wustl.edu	37	16	67580080	67580080	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	16	67580080	67580080	C	T	SNP	FAM65A	NM_024519.2	human	genbank	58_37c	+1	validated	nonsense	c.3508	p.Q1170*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
FAM65C	0	genome.wustl.edu	37	20	49208921	49208921	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	49208921	49208921	C	G	SNP	FAM65C	NM_080829.2	human	genbank	58_37c	-1	predicted	missense	c.2525	p.R842P	0.440	NULL	NULL	-	no_errors
FAM65C	0	genome.wustl.edu	37	20	49236530	49236530	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	49236530	49236530	C	G	SNP	FAM65C	NM_080829.2	human	genbank	58_37c	-1	predicted	missense	c.250	p.G84R	1.000	NULL	NULL	-	no_errors
FASN	0	genome.wustl.edu	37	17	80041432	80041432	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	80041432	80041432	C	T	SNP	FASN	NM_004104.4	human	genbank	58_37c	-1	reviewed	missense	c.5302	p.E1768K	1.000	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_Thioesterase,HMMPfam_adh_short,PatternScan_PHOSPHOPANTETHEINE,HMMPfam_PP-binding,superfamily_ACP-like,superfamily_GroES-like,HMMPfam_ADH_zinc_N,HMMPfam_Methyltransf_12,HMMPfam_ketoacyl-synt,HMMPfam_Ketoacyl-synt_C,HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase,superfamily_Thiolase-like,superfamily_NAD(P)-binding Rossmann-fold domains,PatternScan_B_KETOACYL_SYNTHASE,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_alpha/beta-Hydrolases	-	no_errors
FBXW7	0	genome.wustl.edu	37	4	153247168	153247168	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	153247168	153247168	T	C	SNP	FBXW7	NM_033632.2	human	genbank	58_37c	-1	reviewed	missense	c.1634	p.Y545C	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,HMMPfam_F-box,HMMSmart_SM00256,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_F-box domain	-	no_errors
FER	0	genome.wustl.edu	37	5	108516525	108516525	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	108516525	108516525	A	G	SNP	FER	NM_005246.2	human	genbank	58_37c	+1	reviewed	missense	c.2126	p.E709G	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain	-	no_errors
FKBP15	0	genome.wustl.edu	37	9	115931533	115931533	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	115931533	115931533	G	C	SNP	FKBP15	NM_015258.1	human	genbank	58_37c	-1	validated	silent	c.3456	p.L1152	0.000	NULL	HMMPfam_FKBP_C,superfamily_FKBP-like	-	no_errors
FRG1	0	genome.wustl.edu	37	4	190873403	190873403	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	190873403	190873403	G	A	SNP	FRG1	NM_004477.2	human	genbank	58_37c	+1	reviewed	missense	c.220	p.D74N	1.000	superfamily_Actin-crosslinking proteins,HMMPfam_FRG1	PatternScan_LIPOCALIN,superfamily_Actin-crosslinking proteins,HMMPfam_FRG1	-	no_errors
FRMPD2	0	genome.wustl.edu	37	10	49386172	49386172	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	49386172	49386172	G	A	SNP	FRMPD2	NM_001018071.3	human	genbank	58_37c	-1	reviewed	missense	c.2813	p.P938L	0.001	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00750,HMMPfam_FERM_N,HMMPfam_FERM_C,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like	-	no_errors
GANAB	0	genome.wustl.edu	37	11	62402465	62402465	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	62402465	62402465	C	A	SNP	GANAB	NM_198335.2	human	genbank	58_37c	-1	validated	missense	c.388	p.V130F	0.150	NULL	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2	-	no_errors
GCC1	0	genome.wustl.edu	37	7	127222558	127222558	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	127222558	127222558	G	A	SNP	GCC1	NM_024523.5	human	genbank	58_37c	-1	reviewed	missense	c.1838	p.S613F	0.128	NULL	HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors
GJA5	0	genome.wustl.edu	37	1	147230581	147230581	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	147230581	147230581	C	T	SNP	GJA5	NM_005266.5	human	genbank	58_37c	-1	reviewed	missense	c.766	p.G256S	0.004	NULL	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC	-	no_errors
GPR142	0	genome.wustl.edu	37	17	72368470	72368470	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	72368470	72368470	G	T	SNP	GPR142	NM_181790.1	human	genbank	58_37c	+1	provisional	missense	c.1120	p.V374F	0.068	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
GPR3	0	genome.wustl.edu	37	1	27720951	27720982	+	Frame_Shift_Del	DEL	TGCCGCATCGTCTGCCGCCATGCCCAGCAGAT	TGCCGCATCGTCTGCCGCCATGCCCAGCAGAT	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	TGCCGCATCGTCTGCCGCCATGCCCAGCAGAT	TGCCGCATCGTCTGCCGCCATGCCCAGCAGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	27720951	27720982	TGCCGCATCGTCTGCCGCCATGCCCAGCAGAT	-	DEL	GPR3	NM_005281.2	human	genbank	58_37c	+1	provisional	frame_shift_del	c.649_680	p.R218fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.993:1.000:1.000:0.988:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
HCFC1	0	genome.wustl.edu	37	X	153225483	153225483	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	X	153225483	153225483	G	T	SNP	HCFC1	NM_005334.2	human	genbank	58_37c	-1	reviewed	missense	c.1214	p.T405K	1.000	HMMSmart_SM00060	HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Kelch_1,superfamily_Fibronectin type III,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	-	no_errors
HCN3	0	genome.wustl.edu	37	1	155255534	155255534	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	155255534	155255534	G	C	SNP	HCN3	NM_020897.1	human	genbank	58_37c	+1	validated	missense	c.1256	p.C419S	1.000	superfamily_cNMP_binding	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Ion_trans_N,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324	-	no_errors
HSPA12A	0	genome.wustl.edu	37	10	118439100	118439100	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	118439100	118439100	C	T	SNP	HSPA12A	NM_025015.2	human	genbank	58_37c	-1	validated	silent	c.1200	p.P400	0.001	superfamily_SSF53067	PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF53067	-	no_errors
IDE	0	genome.wustl.edu	37	10	94274755	94274755	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	94274755	94274755	C	G	SNP	IDE	NM_004969.3	human	genbank	58_37c	-1	reviewed	missense	c.706	p.D236H	1.000	HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16	-	no_errors
IFI30	0	genome.wustl.edu	37	19	18286477	18286477	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	18286477	18286477	G	C	SNP	IFI30	NM_006332.3	human	genbank	58_37c	+1	reviewed	missense	c.453	p.E151D	0.002	HMMPfam_GILT	HMMPfam_GILT	-	no_errors
IGHV4-4	0	genome.wustl.edu	37	14	106478307	106478308	+	In_Frame_Ins	INS	-	-	ACCACC	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	14	106478307	106478308	-	ACCACC	INS	IGHV4-4	ENST00000390596	human	ensembl	58_37c	-1	known	in_frame_ins	c.151_150	p.50in_frame_insGG	0.000:0.002	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon
IGKV1D-42	0	genome.wustl.edu	37	2	90229346	90229346	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	90229346	90229346	G	C	SNP	IGKV1D-42	ENST00000390278	human	ensembl	58_37c	+1	known	missense	c.166	p.A56P	0.060	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon
IGSF8	0	genome.wustl.edu	37	1	160063683	160063683	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	160063683	160063683	C	G	SNP	IGSF8	NM_052868.2	human	genbank	58_37c	-1	provisional	missense	c.721	p.G241R	0.990	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
IL27	0	genome.wustl.edu	37	16	28515309	28515309	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	16	28515309	28515309	G	T	SNP	IL27	NM_145659.3	human	genbank	58_37c	-1	reviewed	missense	c.94	p.P32T	0.664	NULL	NULL	-	no_errors
ITIH1	0	genome.wustl.edu	37	3	52822258	52822258	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	52822258	52822258	C	A	SNP	ITIH1	NM_002215.2	human	genbank	58_37c	+1	reviewed	missense	c.2016	p.D672E	0.973	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00609,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_vWA-like	-	no_errors
ITIH5	0	genome.wustl.edu	37	10	7618855	7618855	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	7618855	7618855	G	T	SNP	ITIH5	NM_030569.5	human	genbank	58_37c	-1	validated	silent	c.1539	p.I513	0.892	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00609,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_vWA-like	-	no_errors
ITPR2	0	genome.wustl.edu	37	12	26877590	26877590	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	26877590	26877590	T	A	SNP	ITPR2	NM_002223.2	human	genbank	58_37c	-1	validated	missense	c.365	p.Q122L	1.000	superfamily_MIR domain (Pfam 02815),HMMPfam_Ins145_P3_rec,HMMSmart_SM00472	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2	-	no_errors
JAKMIP1	0	genome.wustl.edu	37	4	6055709	6055709	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	6055709	6055709	A	C	SNP	JAKMIP1	NM_144720.3	human	genbank	58_37c	-1	validated	missense	c.1874	p.F625C	1.000	NULL	NULL	-	no_errors
KCNQ1OT1	0	genome.wustl.edu	37	11	2683441	2683441	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	2683441	2683441	G	T	SNP	KCNQ1OT1	NR_002728.2	human	genbank	58_37c	-1	reviewed	rna	NULL	NULL	0.000	-	-	-	no_errors
KCNQ3	0	genome.wustl.edu	37	8	133182580	133182580	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	8	133182580	133182580	C	A	SNP	KCNQ3	NM_004519.2	human	genbank	58_37c	-1	reviewed	splice_site	c.1235+1	e8+1	1.000	-	-	-	no_errors
KCNV1	0	genome.wustl.edu	37	8	110980364	110980364	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	8	110980364	110980364	C	T	SNP	KCNV1	NM_014379.2	human	genbank	58_37c	-1	reviewed	missense	c.1456	p.E486K	1.000	NULL	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
KIAA0368	0	genome.wustl.edu	37	9	114176865	114176865	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	114176865	114176865	C	A	SNP	KIAA0368	NM_001080398.1	human	genbank	58_37c	-1	provisional	missense	c.2365	p.A789S	1.000	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
KIAA0907	0	genome.wustl.edu	37	1	155899583	155899583	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	155899583	155899583	G	C	SNP	KIAA0907	NM_014949.2	human	genbank	58_37c	-1	predicted	missense	c.304	p.L102V	1.000	superfamily_Eukaryotic type KH-domain (KH-domain type I)	superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
KIAA1524	0	genome.wustl.edu	37	3	108301047	108301047	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	108301047	108301047	G	T	SNP	KIAA1524	NM_020890.2	human	genbank	58_37c	-1	validated	nonsense	c.360	p.C120*	0.992	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
KIF26B	0	genome.wustl.edu	37	1	245850803	245850803	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	245850803	245850803	C	T	SNP	KIF26B	NM_018012.3	human	genbank	58_37c	+1	provisional	silent	c.4518	p.F1506	0.521	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KLK14	0	genome.wustl.edu	37	19	51582880	51582912	+	In_Frame_Del	DEL	CCTGACGAACCACGCGCAGCACCTGCTGGGTGG	CCTGACGAACCACGCGCAGCACCTGCTGGGTGG	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	CCTGACGAACCACGCGCAGCACCTGCTGGGTGG	CCTGACGAACCACGCGCAGCACCTGCTGGGTGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	51582880	51582912	CCTGACGAACCACGCGCAGCACCTGCTGGGTGG	-	DEL	KLK14	NM_022046.4	human	genbank	58_37c	-1	validated	in_frame_del	c.340_308	p.ATQQVLRVVRQ103in_frame_del	1.000:1.000:1.000:1.000:0.994:0.998:0.997:0.000:0.000:0.257:0.315:0.322:0.304:0.019:0.400:0.618:0.990:0.998:0.997:0.995:0.969:0.971:1.000:1.000:1.000:1.000:1.000:0.994:0.927:1.000:1.000:0.998:1.000	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
KRTAP4-7	0	genome.wustl.edu	37	17	39240781	39240781	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	39240781	39240781	C	G	SNP	KRTAP4-7	ENST00000377731	human	ensembl	58_37c	+1	known	missense	c.323	p.T108S	0.518	HMMPfam_Keratin_B2	PatternScan_TNFR_NGFR_1,HMMPfam_Keratin_B2	-	no_errors
LAMC1	0	genome.wustl.edu	37	1	183083678	183083678	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	183083678	183083678	A	G	SNP	LAMC1	NM_002293.3	human	genbank	58_37c	+1	reviewed	missense	c.1034	p.N345S	1.000	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196	HMMPfam_Laminin_B,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF57196	-	no_errors
LBX2	0	genome.wustl.edu	37	2	74725096	74725096	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	74725096	74725096	G	A	SNP	LBX2	NM_001009812.1	human	genbank	58_37c	-1	provisional	silent	c.543	p.S181	0.007	NULL	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like	-	no_errors
LHCGR	0	genome.wustl.edu	37	2	48915906	48915906	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	48915906	48915906	C	G	SNP	LHCGR	NM_000233.3	human	genbank	58_37c	-1	reviewed	missense	c.1030	p.A344P	1.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like	-	no_errors
LILRA2	0	genome.wustl.edu	37	19	55087518	55087518	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	55087518	55087518	C	T	SNP	LILRA2	NM_001130917.1	human	genbank	58_37c	+1	validated	silent	c.1197	p.L399	0.000	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LINGO2	0	genome.wustl.edu	37	9	27950343	27950343	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	27950343	27950343	G	A	SNP	LINGO2	NM_152570.1	human	genbank	58_37c	-1	provisional	silent	c.327	p.S109	1.000	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
LOC100288570	0	genome.wustl.edu	37	2	111144544	111144544	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	111144544	111144544	A	C	SNP	LOC100288570	XM_002342255.1	human	genbank	58_37c	-1	model	missense	c.506	p.L169R	0.803	HMMPfam_Gaa1	HMMPfam_Gaa1	-	no_errors
LOC388692	0	genome.wustl.edu	37	1	149283937	149283937	+	RNA	SNP	T	T	C	rs141791884	byCluster	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	149283937	149283937	T	C	SNP	LOC388692	NR_027002.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.230	-	-	-	no_errors
LOC401777	0	genome.wustl.edu	37	14	58096963	58096963	+	RNA	SNP	A	A	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	14	58096963	58096963	A	G	SNP	LOC401777	XR_078485.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.966	-	-	-	pseudogene
LOC440233	0	genome.wustl.edu	37	15	23407440	23407440	+	RNA	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	23407440	23407440	C	A	SNP	LOC440233	XR_037636.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC441089	0	genome.wustl.edu	37	5	79647692	79647692	+	RNA	SNP	C	G	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	79647692	79647692	C	G	SNP	LOC441089	NR_003665.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC642661	0	genome.wustl.edu	37	14	19719695	19719695	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	14	19719695	19719695	G	A	SNP	LOC642661	XR_016132.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.943	-	-	-	pseudogene
LRRC32	0	genome.wustl.edu	37	11	76370691	76370691	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	76370691	76370691	C	G	SNP	LRRC32	NM_001128922.1	human	genbank	58_37c	-1	reviewed	missense	c.1946	p.C649S	0.918	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
LRRC37A3	0	genome.wustl.edu	37	17	62865212	62865212	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	62865212	62865212	C	T	SNP	LRRC37A3	NM_199340.2	human	genbank	58_37c	-1	provisional	splice_site	c.2978+1	e6+1	1.000	-	-	-	no_errors
LRRK1	0	genome.wustl.edu	37	15	101555536	101555536	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	101555536	101555536	A	G	SNP	LRRK1	NM_024652.3	human	genbank	58_37c	+1	validated	missense	c.1538	p.E513G	1.000	superfamily_L domain-like	HMMSmart_SM00219,HMMPfam_LRR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00220,HMMSmart_SM00369,superfamily_Protein kinase-like (PK-like),HMMPfam_Miro,HMMPfam_Pkinase,HMMSmart_SM00364,superfamily_L domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LSR	0	genome.wustl.edu	37	19	35758116	35758116	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	35758116	35758116	C	G	SNP	LSR	NM_205834.2	human	genbank	58_37c	+1	validated	missense	c.1393	p.P465A	0.163	NULL	PatternScan_ADH_SHORT,HMMSmart_SM00409,HMMPfam_LSR,superfamily_Immunoglobulin	-	no_errors
LYSMD4	0	genome.wustl.edu	37	15	100269499	100269508	+	Frame_Shift_Del	DEL	AAAGTAGACC	AAAGTAGACC	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	AAAGTAGACC	AAAGTAGACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	100269499	100269508	AAAGTAGACC	-	DEL	LYSMD4	NM_152449.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.723_714	p.V239fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.995	NULL	NULL	-	no_errors
LYST	0	genome.wustl.edu	37	1	235860498	235860498	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	235860498	235860498	G	T	SNP	LYST	NM_000081.2	human	genbank	58_37c	-1	reviewed	silent	c.10449	p.V3483	1.000	superfamily_WD40 repeat-like	HMMPfam_Beach,superfamily_BEACH domain,PatternScan_COPPER_BLUE,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
LZTFL1	0	genome.wustl.edu	37	3	45872443	45872443	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	45872443	45872443	C	G	SNP	LZTFL1	NM_020347.2	human	genbank	58_37c	-1	validated	missense	c.562	p.A188P	0.108	NULL	NULL	-	no_errors
MACF1	0	genome.wustl.edu	37	1	39851426	39851426	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	39851426	39851426	G	A	SNP	MACF1	ENST00000372925	human	ensembl	58_37c	+1	known	missense	c.5320	p.G1774R	1.000	HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_GAS2,HMMSmart_SM00243,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00150,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MAN2B1	0	genome.wustl.edu	37	19	12760800	12760800	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	12760800	12760800	G	T	SNP	MAN2B1	NM_000528.3	human	genbank	58_37c	-1	reviewed	missense	c.2194	p.R732S	0.997	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C	HMMPfam_Glyco_hydro_38,superfamily_Gal_mut_like,superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_SSF88688	-	no_errors
MAPKAP1	0	genome.wustl.edu	37	9	128246850	128246850	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	128246850	128246850	T	C	SNP	MAPKAP1	NM_001006617.1	human	genbank	58_37c	-1	reviewed	missense	c.1079	p.D360G	1.000	HMMPfam_SIN1	HMMPfam_SIN1,PatternScan_LECTIN_LEGUME_BETA	-	no_errors
MDGA1	0	genome.wustl.edu	37	6	37620061	37620061	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	37620061	37620061	G	A	SNP	MDGA1	NM_153487.3	human	genbank	58_37c	-1	validated	silent	c.1038	p.N346	1.000	HMMSmart_SM00409,superfamily_Immunoglobulin	PatternScan_NITROGENASE_1_1,HMMPfam_MAM,HMMSmart_SM00137,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
MECOM	0	genome.wustl.edu	37	3	168834507	168834507	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	168834507	168834507	A	G	SNP	MECOM	ENST00000494292	human	ensembl	58_37c	-1	known	missense	c.1153	p.Y385H	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00317,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
METRNL	0	genome.wustl.edu	37	17	81043153	81043153	+	Silent	SNP	C	T	T	rs141838047	byFrequency	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	81043153	81043153	C	T	SNP	METRNL	NM_001004431.1	human	genbank	58_37c	+1	provisional	silent	c.510	p.Y170	0.996	NULL	NULL	-	no_errors
MFI2	0	genome.wustl.edu	37	3	196744075	196744075	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	196744075	196744075	C	T	SNP	MFI2	NM_005929.4	human	genbank	58_37c	-1	reviewed	missense	c.799	p.E267K	0.860	HMMPfam_Transferrin,HMMSmart_SM00094,PatternScan_TRANSFERRIN_3,superfamily_Periplasmic binding protein-like II	HMMPfam_Transferrin,HMMSmart_SM00094,PatternScan_TRANSFERRIN_1,PatternScan_TRANSFERRIN_2,PatternScan_TRANSFERRIN_3,superfamily_Periplasmic binding protein-like II	-	no_errors
MICALL1	0	genome.wustl.edu	37	22	38308003	38308003	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	22	38308003	38308003	G	C	SNP	MICALL1	NM_033386.2	human	genbank	58_37c	+1	validated	missense	c.191	p.R64P	0.984	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	HMMPfam_CH,HMMSmart_CH,HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_Calponin-homology,superfamily_SSF57716	-	no_errors
MICB	0	genome.wustl.edu	37	6	31474128	31474128	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	31474128	31474128	A	C	SNP	MICB	NM_005931.3	human	genbank	58_37c	+1	reviewed	silent	c.534	p.T178	0.000	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
MS4A7	0	genome.wustl.edu	37	11	60160252	60160252	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	60160252	60160252	A	T	SNP	MS4A7	NM_021201.4	human	genbank	58_37c	+1	reviewed	missense	c.641	p.N214I	0.000	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
MUC16	0	genome.wustl.edu	37	19	8974096	8974096	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	8974096	8974096	G	T	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.42575	p.A14192E	0.006	superfamily_SEA domain	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC16	0	genome.wustl.edu	37	19	9004897	9004897	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	9004897	9004897	C	T	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	silent	c.39921	p.E13307	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC17	0	genome.wustl.edu	37	7	100696289	100696289	+	Missense_Mutation	SNP	T	T	A	rs147971427	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	100696289	100696289	T	A	SNP	MUC17	NM_001040105.1	human	genbank	58_37c	+1	provisional	missense	c.13126	p.W4376R	1.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
MYH10	0	genome.wustl.edu	37	17	8390870	8390870	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	8390870	8390870	G	A	SNP	MYH10	NM_005964.1	human	genbank	58_37c	-1	validated	missense	c.4834	p.R1612W	1.000	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Myosin S1 fragment N-terminal domain,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NAV3	0	genome.wustl.edu	37	12	78591132	78591132	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	78591132	78591132	T	C	SNP	NAV3	NM_014903.4	human	genbank	58_37c	+1	validated	missense	c.6331	p.S2111P	1.000	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_CH,HMMSmart_SM00033,HMMSmart_SM00382,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16893721	16893721	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	16893721	16893721	A	C	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	missense	c.2792	p.F931C	0.004	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
NCRNA00201	0	genome.wustl.edu	37	1	245005588	245005588	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	245005588	245005588	C	G	SNP	NCRNA00201	NR_026778.1	human	genbank	58_37c	-1	predicted	rna	NULL	NULL	0.000	-	-	-	no_errors
NFKB1	0	genome.wustl.edu	37	4	103500040	103500040	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	103500040	103500040	C	T	SNP	NFKB1	NM_003998.3	human	genbank	58_37c	+1	reviewed	missense	c.574	p.R192W	0.071	superfamily_ANK,superfamily_P53_like_DNA_bnd,HMMPfam_RHD	PatternScan_REL_1,HMMPfam_Death,HMMSmart_DEATH,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_TIG,HMMSmart_IPT,superfamily_P53_like_DNA_bnd,superfamily_DEATH_like,HMMPfam_RHD,superfamily_Ig_E-set	-	no_errors
NGF	0	genome.wustl.edu	37	1	115829056	115829056	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	115829056	115829056	G	A	SNP	NGF	NM_002506.2	human	genbank	58_37c	-1	reviewed	missense	c.361	p.R121W	1.000	NULL	HMMPfam_NGF,HMMSmart_NGF,PatternScan_NGF_1,superfamily_SSF57501	-	no_errors
NLRP13	0	genome.wustl.edu	37	19	56423120	56423120	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	56423120	56423120	C	G	SNP	NLRP13	NM_176810.2	human	genbank	58_37c	-1	validated	missense	c.2063	p.R688T	0.615	superfamily_SSF52047	HMMPfam_LRR_1,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047	-	no_errors
NLRP14	0	genome.wustl.edu	37	11	7063859	7063859	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	7063859	7063859	C	G	SNP	NLRP14	NM_176822.3	human	genbank	58_37c	+1	reviewed	missense	c.602	p.A201G	1.000	HMMPfam_NACHT	HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047	-	no_errors
NSD1	0	genome.wustl.edu	37	5	176562116	176562116	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	176562116	176562116	C	T	SNP	NSD1	NM_022455.4	human	genbank	58_37c	+1	reviewed	silent	c.12	p.T4	1.000	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00249,HMMSmart_SM00508,HMMSmart_SM00570,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT,superfamily_SET domain	-	no_errors
NT5E	0	genome.wustl.edu	37	6	86203631	86203631	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	86203631	86203631	G	A	SNP	NT5E	NM_002526.2	human	genbank	58_37c	+1	validated	missense	c.1634	p.R545Q	1.000	superfamily_5apos-Nucleotdase_C	HMMPfam_Metallophos,PatternScan_5_NUCLEOTIDASE_1,PatternScan_5_NUCLEOTIDASE_2,HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C,superfamily_SSF56300	-	no_errors
OR13G1	0	genome.wustl.edu	37	1	247835593	247835593	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	247835593	247835593	G	T	SNP	OR13G1	NM_001005487.1	human	genbank	58_37c	-1	provisional	missense	c.751	p.P251T	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR5D14	0	genome.wustl.edu	37	11	55563515	55563515	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	55563515	55563515	C	T	SNP	OR5D14	NM_001004735.1	human	genbank	58_37c	+1	provisional	missense	c.484	p.L162F	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR6C3	0	genome.wustl.edu	37	12	55725942	55725942	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	55725942	55725942	T	A	SNP	OR6C3	NM_054104.1	human	genbank	58_37c	+1	provisional	missense	c.458	p.I153N	0.001	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR8G5	0	genome.wustl.edu	37	11	124120687	124120687	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	124120687	124120687	A	C	SNP	OR8G5	ENST00000341493	human	ensembl	58_37c	+1	known	missense	c.265	p.K89Q	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
ORC2L	0	genome.wustl.edu	37	2	201776110	201776110	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	201776110	201776110	C	G	SNP	ORC2L	NM_006190.3	human	genbank	58_37c	-1	reviewed	missense	c.1648	p.G550R	1.000	HMMPfam_ORC2	HMMPfam_ORC2	-	no_errors
OSBPL5	0	genome.wustl.edu	37	11	3147733	3147733	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	3147733	3147733	C	A	SNP	OSBPL5	NM_020896.3	human	genbank	58_37c	-1	reviewed	silent	c.189	p.P63	0.992	NULL	HMMPfam_Oxysterol_BP,HMMPfam_PH,HMMSmart_PH,PatternScan_OSBP,superfamily_SSF50729	-	no_errors
OTOG	0	genome.wustl.edu	37	11	17573591	17573591	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	17573591	17573591	G	T	SNP	OTOG	XM_002343051.1	human	genbank	58_37c	+1	model	missense	c.294	p.R98S	0.992	NULL	HMMPfam_VWC,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,HMMSmart_SM00215,HMMPfam_AbfB,superfamily_AbfB domain (Pfam 05270),superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
OVGP1	0	genome.wustl.edu	37	1	111966173	111966173	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	111966173	111966173	A	C	SNP	OVGP1	NM_002557.3	human	genbank	58_37c	-1	reviewed	missense	c.475	p.L159V	0.963	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain	-	no_errors
P2RX2	0	genome.wustl.edu	37	12	133198288	133198288	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	133198288	133198288	T	G	SNP	P2RX2	NM_170683.2	human	genbank	58_37c	+1	reviewed	missense	c.1224	p.C408W	0.672	HMMPfam_P2X_receptor	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR	-	no_errors
PABPC3	0	genome.wustl.edu	37	13	25671097	25671098	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	13	25671097	25671098	-	T	INS	PABPC3	NM_030979.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.761_762	p.K254fs	1.000:1.000	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_PABP,HMMSmart_SM00517,superfamily_PABC (PABP) domain,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
PAQR8	0	genome.wustl.edu	37	6	52268806	52268806	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	52268806	52268806	C	G	SNP	PAQR8	NM_133367.4	human	genbank	58_37c	+1	validated	silent	c.795	p.P265	0.024	HMMPfam_HlyIII	HMMPfam_HlyIII	-	no_errors
PC	0	genome.wustl.edu	37	11	66620009	66620009	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	66620009	66620009	A	C	SNP	PC	NM_000920.3	human	genbank	58_37c	-1	reviewed	missense	c.1726	p.S576A	1.000	HMMPfam_HMGL-like,superfamily_SSF51569	HMMPfam_Biotin_lipoyl,HMMPfam_HMGL-like,PatternScan_BIOTIN,HMMPfam_PYC_OADA,HMMPfam_CPSase_L_D2,HMMPfam_CPSase_L_chain,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,superfamily_Rudmnt_hyb_motif,superfamily_PreATP-grasp-like,superfamily_SSF51569,superfamily_SSF56059,superfamily_SSF89000	-	no_errors
PCDHGB4	0	genome.wustl.edu	37	5	140769218	140769218	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	140769218	140769218	A	T	SNP	PCDHGB4	NM_003736.2	human	genbank	58_37c	+1	reviewed	silent	c.1767	p.V589	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PDXDC1	0	genome.wustl.edu	37	16	15103550	15103550	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	16	15103550	15103550	C	T	SNP	PDXDC1	NM_015027.2	human	genbank	58_37c	+1	validated	silent	c.661	p.L221	0.998	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases	-	no_errors
PHACTR3	0	genome.wustl.edu	37	20	58349443	58349443	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	58349443	58349443	G	C	SNP	PHACTR3	NM_080672.3	human	genbank	58_37c	+1	reviewed	missense	c.1072	p.E358Q	0.989	NULL	HMMPfam_RPEL,HMMSmart_SM00707	-	no_errors
PHF11	0	genome.wustl.edu	37	13	50098309	50098309	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	13	50098309	50098309	T	G	SNP	PHF11	NM_001040443.1	human	genbank	58_37c	+1	validated	missense	c.726	p.H242Q	0.059	NULL	HMMSmart_PHD	-	no_errors
PLIN4	0	genome.wustl.edu	37	19	4510826	4510826	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	4510826	4510826	A	T	SNP	PLIN4	NM_001080400.1	human	genbank	58_37c	-1	provisional	missense	c.3104	p.L1035H	0.000	NULL	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-	no_errors
PNMAL2	0	genome.wustl.edu	37	19	46997557	46997571	+	In_Frame_Del	DEL	TTCACGCGGGTCCCG	TTCACGCGGGTCCCG	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	TTCACGCGGGTCCCG	TTCACGCGGGTCCCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	46997557	46997571	TTCACGCGGGTCCCG	-	DEL	PNMAL2	NM_020709.1	human	genbank	58_37c	-1	validated	in_frame_del	c.1166_1152	p.NGTRV384in_frame_del	0.405:0.411:0.431:0.414:0.383:0.305:0.313:0.308:0.291:0.282:0.176:0.164:0.176:0.159:0.001	NULL	NULL	-	no_errors
PNPLA8	0	genome.wustl.edu	37	7	108131874	108131874	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	108131874	108131874	T	C	SNP	PNPLA8	NM_015723.2	human	genbank	58_37c	-1	provisional	missense	c.1663	p.R555G	1.000	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like	HMMPfam_Patatin,superfamily_ARM repeat,superfamily_FabD/lysophospholipase-like	-	no_errors
PPP2CA	0	genome.wustl.edu	37	5	133541707	133541725	+	Frame_Shift_Del	DEL	CCACCAATTCTAAACAGTT	CCACCAATTCTAAACAGTT	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	CCACCAATTCTAAACAGTT	CCACCAATTCTAAACAGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	133541707	133541725	CCACCAATTCTAAACAGTT	-	DEL	PPP2CA	NM_002715.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.218_200	p.E67fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.989:1.000:1.000:1.000:1.000	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases	HMMPfam_Metallophos,HMMSmart_SM00156,PatternScan_SER_THR_PHOSPHATASE,superfamily_Metallo-dependent phosphatases	-	no_errors
PPRC1	0	genome.wustl.edu	37	10	103909715	103909715	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	103909715	103909715	G	A	SNP	PPRC1	NM_015062.3	human	genbank	58_37c	+1	reviewed	missense	c.4924	p.V1642I	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
PRPF4	0	genome.wustl.edu	37	9	116053191	116053191	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	116053191	116053191	A	C	SNP	PRPF4	NM_004697.3	human	genbank	58_37c	+1	provisional	missense	c.1270	p.T424P	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	HMMSmart_SM00320,HMMSmart_SM00500,superfamily_WD40 repeat-like,HMMPfam_PRP4,PatternScan_WD_REPEATS_1,HMMPfam_WD40,PatternScan_PEROXIDASE_2	-	no_errors
PSMA5	0	genome.wustl.edu	37	1	109957929	109957929	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	109957929	109957929	C	T	SNP	PSMA5	NM_002790.2	human	genbank	58_37c	-1	reviewed	silent	c.153	p.E51	1.000	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	HMMPfam_Proteasome_A_N,PatternScan_PROTEASOME_A,HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	-	no_errors
PSMD4	0	genome.wustl.edu	37	1	151227268	151227268	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	151227268	151227268	G	C	SNP	PSMD4	NM_002810.2	human	genbank	58_37c	+1	reviewed	missense	c.10	p.E4Q	1.000	HMMSmart_SM00327	HMMSmart_SM00327,HMMPfam_UIM,HMMSmart_SM00726,superfamily_vWA-like	-	no_errors
PSME3	0	genome.wustl.edu	37	17	40993571	40993571	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	40993571	40993571	C	T	SNP	PSME3	NM_176863.1	human	genbank	58_37c	+1	reviewed	silent	c.780	p.S260	1.000	HMMPfam_PA28_beta,superfamily_Prot_act_regA	HMMPfam_PA28_alpha,HMMPfam_PA28_beta,superfamily_Prot_act_regA	-	no_errors
PTCD1	0	genome.wustl.edu	37	7	99026733	99026734	+	Frame_Shift_Ins	INS	-	-	CGTAC	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	99026733	99026734	-	CGTAC	INS	PTCD1	NM_015545.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.908_907	p.A303fs	0.795:0.768	NULL	HMMPfam_PPR	-	no_errors
PTPRN	0	genome.wustl.edu	37	2	220155281	220155281	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	220155281	220155281	C	A	SNP	PTPRN	NM_002846.2	human	genbank	58_37c	-1	reviewed	silent	c.2847	p.R949	0.998	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RAD23A	0	genome.wustl.edu	37	19	13059325	13059325	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	13059325	13059325	C	G	SNP	RAD23A	NM_005053.2	human	genbank	58_37c	+1	reviewed	nonsense	c.431	p.S144*	1.000	NULL	HMMPfam_UBA,HMMPfam_ubiquitin,HMMSmart_UBQ,HMMSmart_STI1,superfamily_UBA_like,HMMPfam_XPC-binding,superfamily_XPC-bd,HMMSmart_UBA,PatternScan_UBIQUITIN_1,superfamily_SSF54236	-	no_errors
RASSF4	0	genome.wustl.edu	37	10	45487443	45487443	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	45487443	45487443	A	T	SNP	RASSF4	NM_032023.3	human	genbank	58_37c	+1	reviewed	missense	c.898	p.T300S	1.000	NULL	HMMPfam_RA,HMMSmart_SM00314	-	no_errors
RESP18	0	genome.wustl.edu	37	2	220193616	220193644	+	Splice_Site	DEL	TTCAATGCCTATTTTAAACTCAATACTTA	TTCAATGCCTATTTTAAACTCAATACTTA	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	TTCAATGCCTATTTTAAACTCAATACTTA	TTCAATGCCTATTTTAAACTCAATACTTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	220193616	220193644	TTCAATGCCTATTTTAAACTCAATACTTA	-	DEL	RESP18	NM_001007089.3	human	genbank	58_37c	-1	validated	splice_site_del	c.640+2_640+1	e6+2	0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.002:0.002:0.002:0.002:0.003:0.001:0.002:0.003:0.001:0.000:0.006:0.007:0.046:0.016:0.008:0.001:0.000:0.000:0.000:0.000	-	-	-	no_errors
RIMBP2	0	genome.wustl.edu	37	12	130898669	130898669	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	130898669	130898669	C	A	SNP	RIMBP2	NM_015347.4	human	genbank	58_37c	-1	validated	splice_site	c.2652+1	e12+1	1.000	-	-	-	no_errors
RIN3	0	genome.wustl.edu	37	14	93022208	93022208	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	14	93022208	93022208	C	G	SNP	RIN3	NM_024832.3	human	genbank	58_37c	+1	validated	missense	c.157	p.L53V	1.000	superfamily_SH2 domain	HMMSmart_SM00252,HMMPfam_VPS9,HMMSmart_SM00167,superfamily_VPS9 domain (Pfam 02204),superfamily_SH2 domain	-	no_errors
RPA3	0	genome.wustl.edu	37	7	7676652	7676652	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	7676652	7676652	T	A	SNP	RPA3	NM_002947.3	human	genbank	58_37c	-1	validated	missense	c.345	p.L115F	0.992	superfamily_Nucleic acid-binding proteins	HMMPfam_Rep_fac-A_3,superfamily_Nucleic acid-binding proteins	-	no_errors
RPE65	0	genome.wustl.edu	37	1	68903958	68903958	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	68903958	68903958	C	T	SNP	RPE65	NM_000329.2	human	genbank	58_37c	-1	reviewed	missense	c.1040	p.R347H	1.000	HMMPfam_RPE65	HMMPfam_RPE65	-	no_errors
RPS15	0	genome.wustl.edu	37	19	1440145	1440145	+	Missense_Mutation	SNP	C	C	T	rs146047499	byFrequency	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	1440145	1440145	C	T	SNP	RPS15	NM_001018.3	human	genbank	58_37c	+1	reviewed	missense	c.217	p.P73S	1.000	HMMPfam_Ribosomal_S19,superfamily_Ribosomal protein S19	HMMPfam_Ribosomal_S19,PatternScan_RIBOSOMAL_S19,superfamily_Ribosomal protein S19	-	no_errors
RTL1	0	genome.wustl.edu	37	14	101350433	101350433	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	14	101350433	101350433	G	A	SNP	RTL1	NM_001134888.2	human	genbank	58_37c	-1	reviewed	silent	c.693	p.F231	0.192	NULL	HMMPfam_Retrotrans_gag,superfamily_Acid proteases,superfamily_DNA/RNA polymerases	-	no_errors
RUFY2	0	genome.wustl.edu	37	10	70153888	70153888	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	10	70153888	70153888	T	A	SNP	RUFY2	NM_017987.4	human	genbank	58_37c	-1	validated	silent	c.633	p.G211	1.000	NULL	HMMPfam_FYVE,HMMSmart_FYVE,HMMPfam_RUN,HMMSmart_RUN,superfamily_FYVE_PHD_ZnF	-	no_errors
RXFP2	0	genome.wustl.edu	37	13	32340136	32340136	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	13	32340136	32340136	T	G	SNP	RXFP2	NM_130806.3	human	genbank	58_37c	+1	reviewed	missense	c.469	p.F157V	1.000	HMMSmart_SM00369,superfamily_L domain-like	HMMPfam_7tm_1,HMMPfam_LRR_1,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMSmart_SM00369,superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like	-	no_errors
SDCBP2	0	genome.wustl.edu	37	20	1299057	1299057	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	1299057	1299057	A	G	SNP	SDCBP2	NM_080489.3	human	genbank	58_37c	-1	validated	missense	c.130	p.Y44H	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
SEC22B	0	genome.wustl.edu	37	1	145115815	145115815	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	145115815	145115815	A	C	SNP	SEC22B	NM_004892.4	human	genbank	58_37c	+1	reviewed	missense	c.574	p.T192P	1.000	NULL	HMMPfam_Synaptobrevin,superfamily_SNARE-like	-	pseudogene
SERHL2	0	genome.wustl.edu	37	22	42962330	42962330	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	22	42962330	42962330	C	A	SNP	SERHL2	NM_014509.3	human	genbank	58_37c	+1	provisional	missense	c.634	p.Q212K	0.761	superfamily_alpha/beta-Hydrolases	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases	-	no_errors
SERPINE1	0	genome.wustl.edu	37	7	100777023	100777023	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	100777023	100777023	C	G	SNP	SERPINE1	NM_000602.3	human	genbank	58_37c	+1	reviewed	missense	c.748	p.P250A	1.000	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SI	0	genome.wustl.edu	37	3	164733798	164733798	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	164733798	164733798	T	A	SNP	SI	NM_001041.3	human	genbank	58_37c	-1	reviewed	missense	c.3830	p.D1277V	0.002	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL	-	no_errors
SIN3B	0	genome.wustl.edu	37	19	16964996	16964996	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	16964996	16964996	C	G	SNP	SIN3B	NM_015260.1	human	genbank	58_37c	+1	provisional	missense	c.982	p.L328V	1.000	HMMPfam_PAH,superfamily_PAH2 domain	HMMPfam_PAH,superfamily_PAH2 domain,HMMPfam_HDAC_interact,HMMSmart_SM00761	-	no_errors
SLC12A8	0	genome.wustl.edu	37	3	124829135	124829135	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	124829135	124829135	C	G	SNP	SLC12A8	NM_024628.5	human	genbank	58_37c	-1	validated	silent	c.957	p.S319	0.370	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC4A5	0	genome.wustl.edu	37	2	74462341	74462341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	74462341	74462341	C	T	SNP	SLC4A5	NM_021196.3	human	genbank	58_37c	-1	reviewed	missense	c.2320	p.V774I	1.000	HMMPfam_HCO3_cotransp	HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein	-	no_errors
SLIT3	0	genome.wustl.edu	37	5	168727598	168727598	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	168727598	168727598	G	C	SNP	SLIT3	NM_003062.2	human	genbank	58_37c	-1	validated	missense	c.116	p.T39S	1.000	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like	PatternScan_ASX_HYDROXYL,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00282,HMMSmart_SM00179,HMMSmart_SM00368,HMMSmart_SM00369,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like,superfamily_EGF/Laminin	-	no_errors
SSC5D	0	genome.wustl.edu	37	19	56029455	56029455	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	56029455	56029455	C	A	SNP	SSC5D	NM_001144950.1	human	genbank	58_37c	+1	provisional	missense	c.3812	p.P1271H	0.001	NULL	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors
STK31	0	genome.wustl.edu	37	7	23809335	23809335	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	7	23809335	23809335	C	G	SNP	STK31	NM_031414.3	human	genbank	58_37c	+1	reviewed	missense	c.1673	p.T558S	0.998	NULL	HMMSmart_SM00220,HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Protein kinase-like (PK-like),superfamily_Tudor/PWWP/MBT	-	no_errors
STXBP5	0	genome.wustl.edu	37	6	147636833	147636833	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	147636833	147636833	A	C	SNP	STXBP5	NM_001127715.1	human	genbank	58_37c	+1	reviewed	silent	c.1585	p.R529	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
SYN2	0	genome.wustl.edu	37	3	12203643	12203643	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	12203643	12203643	C	T	SNP	SYN2	ENST00000426379	human	ensembl	58_37c	+1	known	missense	c.995	p.T332I	1.000	NULL	HMMPfam_Synapsin_N,PatternScan_SYNAPSIN_1	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SYNPO2	0	genome.wustl.edu	37	4	119951302	119951302	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	4	119951302	119951302	C	A	SNP	SYNPO2	NM_133477.2	human	genbank	58_37c	+1	validated	missense	c.1372	p.Q458K	0.010	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
SYNPR	0	genome.wustl.edu	37	3	63466633	63466633	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	63466633	63466633	G	A	SNP	SYNPR	NM_001130003.1	human	genbank	58_37c	+1	validated	splice_site	c.209+1	e3+1	1.000	-	-	-	no_errors
TBC1D13	0	genome.wustl.edu	37	9	131553046	131553046	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	131553046	131553046	T	C	SNP	TBC1D13	NM_018201.3	human	genbank	58_37c	+1	validated	missense	c.130	p.C44R	1.000	HMMSmart_TBC,superfamily_RabGAP_TBC	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC	-	no_errors
TBC1D20	0	genome.wustl.edu	37	20	420924	420924	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	420924	420924	G	T	SNP	TBC1D20	NM_144628.2	human	genbank	58_37c	-1	validated	missense	c.736	p.H246N	1.000	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
TCEB1	0	genome.wustl.edu	37	8	74859004	74859004	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	8	74859004	74859004	G	A	SNP	TCEB1	NM_005648.2	human	genbank	58_37c	-1	reviewed	missense	c.200	p.S67L	1.000	HMMSmart_SM00512,superfamily_POZ domain,HMMPfam_Skp1_POZ	HMMSmart_SM00512,superfamily_POZ domain,HMMPfam_Skp1_POZ	-	no_errors
TCP10	0	genome.wustl.edu	37	6	167789534	167789534	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	167789534	167789534	T	A	SNP	TCP10	NM_004610.3	human	genbank	58_37c	-1	validated	missense	c.608	p.N203I	0.000	HMMPfam_Tcp10_C	HMMPfam_Tcp10_C	-	no_errors
TGM2	0	genome.wustl.edu	37	20	36759526	36759526	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	20	36759526	36759526	C	A	SNP	TGM2	NM_004613.2	human	genbank	58_37c	-1	reviewed	missense	c.1882	p.G628C	0.997	HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_SM00460,HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains,PatternScan_TRANSGLUTAMINASES,superfamily_E set domains,superfamily_Cysteine proteinases	-	no_errors
THBS1	0	genome.wustl.edu	37	15	39884927	39884927	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	39884927	39884927	T	C	SNP	THBS1	NM_003246.2	human	genbank	58_37c	+1	reviewed	silent	c.2691	p.D897	0.981	HMMPfam_TSP_3,superfamily_TSP type-3 repeat	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMSmart_SM00179,HMMSmart_SM00210,HMMPfam_TSP_3,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_TSP_C,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,superfamily_TSP type-3 repeat,superfamily_EGF/Laminin	-	no_errors
TM2D2	0	genome.wustl.edu	37	8	38852899	38852899	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	8	38852899	38852899	C	G	SNP	TM2D2	NM_078473.2	human	genbank	58_37c	-1	validated	missense	c.253	p.D85H	1.000	NULL	HMMPfam_TM2	-	no_errors
TMC6	0	genome.wustl.edu	37	17	76121839	76121853	+	In_Frame_Del	DEL	AGGTCGTACAGGCGG	AGGTCGTACAGGCGG	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	AGGTCGTACAGGCGG	AGGTCGTACAGGCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	76121839	76121853	AGGTCGTACAGGCGG	-	DEL	TMC6	NM_001127198.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.398_384	p.RLYDL129in_frame_del	0.999:0.983:1.000:1.000:1.000:0.938:0.975:0.977:0.974:0.991:0.996:0.996:1.000:1.000:0.995	NULL	HMMPfam_TMC	-	no_errors
TMEM145	0	genome.wustl.edu	37	19	42821924	42821924	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	19	42821924	42821924	C	G	SNP	TMEM145	NM_173633.2	human	genbank	58_37c	+1	validated	missense	c.964	p.L322V	1.000	HMMPfam_GpcrRhopsn4	HMMPfam_GpcrRhopsn4	-	no_errors
TMPRSS6	0	genome.wustl.edu	37	22	37465386	37465390	+	Splice_Site	DEL	TGGGG	TGGGG	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	TGGGG	TGGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	22	37465386	37465390	TGGGG	-	DEL	TMPRSS6	NM_153609.2	human	genbank	58_37c	-1	reviewed	splice_site_del	c.1869-6_1869-2	e16-2	1.000:1.000:0.989:0.978:0.614	-	-	-	no_errors
TNIK	0	genome.wustl.edu	37	3	170875269	170875269	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	170875269	170875269	G	C	SNP	TNIK	NM_015028.2	human	genbank	58_37c	-1	validated	missense	c.1201	p.Q401E	1.000	NULL	HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TP53	0	genome.wustl.edu	37	17	7579359	7579360	+	Frame_Shift_Ins	INS	-	-	GA	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	7579359	7579360	-	GA	INS	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.328_327	p.R109fs	0.028:0.864	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TSPAN32	0	genome.wustl.edu	37	11	2337833	2337849	+	Frame_Shift_Del	DEL	CTGTGGTTTGCCATCCG	CTGTGGTTTGCCATCCG	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	CTGTGGTTTGCCATCCG	CTGTGGTTTGCCATCCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	11	2337833	2337849	CTGTGGTTTGCCATCCG	-	DEL	TSPAN32	NM_139022.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.655_671	p.F221fs	1.000:1.000:1.000:0.998:0.989:0.833:0.658:0.632:0.558:0.565:0.605:0.584:0.455:0.422:0.317:0.272:0.024	HMMPfam_Tetraspannin	superfamily_Tetraspanin,HMMPfam_Tetraspannin	-	no_errors
TTC24	0	genome.wustl.edu	37	1	156551191	156551191	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	156551191	156551191	G	A	SNP	TTC24	ENST00000368237	human	ensembl	58_37c	+1	known	missense	c.35	p.R12K	0.193	superfamily_SSF48452	HMMPfam_TPR_1,HMMPfam_TPR_4,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
TTN	0	genome.wustl.edu	37	2	179614480	179614480	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	179614480	179614480	A	T	SNP	TTN	NM_133379.3	human	genbank	58_37c	-1	reviewed	nonsense	c.12647	p.L4216*	0.935	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726	PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726	-	no_errors
UBE2CBP	0	genome.wustl.edu	37	6	83728709	83728709	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	83728709	83728709	G	A	SNP	UBE2CBP	NM_198920.1	human	genbank	58_37c	-1	provisional	silent	c.993	p.I331	1.000	HMMPfam_DUF2351	HMMPfam_DUF2351	-	no_errors
UBE2R2	0	genome.wustl.edu	37	9	33900241	33900241	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	9	33900241	33900241	G	A	SNP	UBE2R2	NM_017811.3	human	genbank	58_37c	+1	reviewed	missense	c.334	p.E112K	1.000	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like	HMMPfam_UQ_con,HMMSmart_SM00212,PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBC-like	-	no_errors
UGT1A4	0	genome.wustl.edu	37	2	234627956	234627956	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	234627956	234627956	T	C	SNP	UGT1A4	NM_007120.2	human	genbank	58_37c	+1	reviewed	missense	c.490	p.Y164H	0.000	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
UNC45A	0	genome.wustl.edu	37	15	91493734	91493734	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	91493734	91493734	A	G	SNP	UNC45A	NM_018671.3	human	genbank	58_37c	+1	validated	missense	c.2192	p.Y731C	1.000	superfamily_ARM repeat	HMMPfam_TPR_1,HMMPfam_TPR_2,superfamily_ARM repeat,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
USP32	0	genome.wustl.edu	37	17	58288421	58288421	+	Missense_Mutation	SNP	C	C	T	rs146577219	byFrequency	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	58288421	58288421	C	T	SNP	USP32	NM_032582.3	human	genbank	58_37c	-1	validated	missense	c.2377	p.E793K	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,HMMSmart_EFh,HMMSmart_DUSP,HMMPfam_DUF1055,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473,superfamily_SSF54001	-	no_errors
USP34	0	genome.wustl.edu	37	2	61515816	61515816	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	2	61515816	61515816	G	A	SNP	USP34	NM_014709.3	human	genbank	58_37c	-1	validated	missense	c.4745	p.T1582I	1.000	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
VGLL2	0	genome.wustl.edu	37	6	117589357	117589357	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	117589357	117589357	T	C	SNP	VGLL2	NM_182645.2	human	genbank	58_37c	+1	provisional	missense	c.94	p.Y32H	1.000	NULL	HMMPfam_Vg_Tdu	-	no_errors
VTI1B	0	genome.wustl.edu	37	14	68126640	68126640	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	14	68126640	68126640	C	G	SNP	VTI1B	NM_006370.2	human	genbank	58_37c	-1	validated	splice_site	c.175-1	e3-1	1.000	-	-	-	no_errors
VWA5B2	0	genome.wustl.edu	37	3	183959139	183959139	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	3	183959139	183959139	G	T	SNP	VWA5B2	NM_138345.1	human	genbank	58_37c	+1	provisional	missense	c.3127	p.D1043Y	0.003	NULL	HMMSmart_VWA,superfamily_SSF53300	-	no_errors
WASH2P	0	genome.wustl.edu	37	15	102516424	102516424	+	Silent	SNP	G	G	T	rs71252253	byFrequency	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	15	102516424	102516424	G	T	SNP	WASH2P	ENST00000423286	human	ensembl	58_37c	+1	known	silent	c.1353	p.P451	0.990	NULL	NULL	-	no_errors
WASH7P	0	genome.wustl.edu	37	1	14677	14677	+	RNA	SNP	G	A	A	rs112391680	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	1	14677	14677	G	A	SNP	WASH7P	NR_024540.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.041	-	-	-	pseudogene
WFIKKN2	0	genome.wustl.edu	37	17	48917309	48917309	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	48917309	48917309	G	A	SNP	WFIKKN2	NM_175575.5	human	genbank	58_37c	+1	reviewed	silent	c.660	p.S220	0.003	HMMPfam_I-set,superfamily_SSF48726	HMMPfam_Kunitz_BPTI,HMMSmart_KU,PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m,HMMSmart_KAZAL,PatternScan_KAZAL,HMMSmart_IGc2,HMMPfam_WAP,HMMSmart_WAP,superfamily_WAP,superfamily_TIMP_like,HMMPfam_Kazal_2,HMMPfam_I-set,PatternScan_4_DISULFIDE_CORE,superfamily_SSF100895,superfamily_SSF48726	-	no_errors
WRAP53	0	genome.wustl.edu	37	17	7592245	7592245	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	17	7592245	7592245	C	T	SNP	WRAP53	NM_018081.2	human	genbank	58_37c	+1	validated	silent	c.279	p.I93	0.001	NULL	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
XPO5	0	genome.wustl.edu	37	6	43535019	43535020	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	43535019	43535020	-	C	INS	XPO5	NM_020750.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.721_720	p.S240fs	0.998:1.000	HMMPfam_Xpo1,superfamily_ARM repeat	HMMPfam_Xpo1,superfamily_ARM repeat	-	no_errors
XPO5	0	genome.wustl.edu	37	6	43535023	43535025	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	6	43535023	43535025	AGA	-	DEL	XPO5	NM_020750.2	human	genbank	58_37c	-1	validated	in_frame_del	c.717_715	p.S239in_frame_del	0.304:0.952:0.935	HMMPfam_Xpo1,superfamily_ARM repeat	HMMPfam_Xpo1,superfamily_ARM repeat	-	no_errors
ZNF280B	0	genome.wustl.edu	37	22	22842463	22842463	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	22	22842463	22842463	G	A	SNP	ZNF280B	NM_080764.2	human	genbank	58_37c	-1	reviewed	missense	c.1261	p.H421Y	1.000	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_RING/U-box	-	no_errors
ZNF608	0	genome.wustl.edu	37	5	124080554	124080556	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	5	124080554	124080556	CTT	-	DEL	ZNF608	NM_020747.2	human	genbank	58_37c	-1	validated	in_frame_del	c.129_127	p.K43in_frame_del	1.000:1.000:1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF705A	0	genome.wustl.edu	37	12	8328517	8328517	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A256-01A-11D-A167-09	TCGA-AR-A256-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ea43434b-197e-48ac-ae2e-46bc7f3776de	09f34836-fc9a-4ff4-a0c9-fd93259e32f3	12	8328517	8328517	C	A	SNP	ZNF705A	NM_001004328.2	human	genbank	58_37c	+1	validated	missense	c.297	p.D99E	0.028	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
