Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
ABCC9	10060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	21968702	21968702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
ADD3	120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	111877147	111877147	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
AGBL1	123624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	86838616	86838616	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
AKAP9	10142	hgsc.bcm.edu;ucsc.edu	37	7	91708532	91708532	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
AMAC1L3	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	7385621	7385621	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
ANAPC5	51433	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	121758187	121758187	+	Splice_Site	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
BEND2	139105	broad.mit.edu;ucsc.edu	37	X	18219956	18219956	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
BIRC6	57448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	32631593	32631593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
BSPRY	54836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	116132237	116132237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
C10orf62	414157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	99350271	99350271	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
C13orf23	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	39587314	39587314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
C17orf68	0	hgsc.bcm.edu	37	17	8139457	8139458	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
CACNB1	782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37333729	37333729	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
CCBE1	147372	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	57136800	57136800	+	Missense_Mutation	SNP	C	C	T	rs121908251	alternate_allele	TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
CCDC15	80071	hgsc.bcm.edu;ucsc.edu	37	11	124824706	124824706	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
CCNC	892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	100009547	100009547	+	Silent	SNP	T	T	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
CHD9	80205	hgsc.bcm.edu;ucsc.edu	37	16	53296952	53296952	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
CLCA1	1179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	86947888	86947888	+	Silent	SNP	A	A	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
EHBP1	23301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	63101527	63101527	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
EIF5	1983	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	103802419	103802419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
ERBB2	2064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	37866350	37866350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
ERI2	112479	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	20802204	20802204	+	Silent	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
FAM21B	55747	hgsc.bcm.edu	37	10	47909179	47909181	+	In_Frame_Del	DEL	ATA	ATA	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	ATA	ATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
FAM5B	57795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	177250548	177250548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
GABRQ	55879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	151818948	151818948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
GLB1	2720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	33093265	33093265	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
GRM6	2916	hgsc.bcm.edu	37	5	178410194	178410195	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
HGFAC	3083	broad.mit.edu;ucsc.edu	37	4	3446996	3446996	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
HIP1R	9026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	123343990	123343990	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
HLA-A	3105	hgsc.bcm.edu	37	6	29910622	29910622	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
HOXB4	3214	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	46654154	46654154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
HR	55806	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	21985225	21985225	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
ILVBL	10994	broad.mit.edu;hgsc.bcm.edu	37	19	15227242	15227242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
KATNA1	11104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	149944376	149944376	+	Missense_Mutation	SNP	C	C	A	rs142263647	alternate_allele	TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
KBTBD7	84078	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	41767262	41767262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
KCTD8	386617	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	44450161	44450161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
KDM3A	55818	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	86712976	86712976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
KIAA0319L	79932	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	35917273	35917273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
KLHL6	89857	broad.mit.edu;ucsc.edu	37	3	183211912	183211912	+	Silent	SNP	G	T	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
KRTCAP2	200185	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155145769	155145771	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
LRRCC1	85444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	86047101	86047101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
MAN2B2	23324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	6611625	6611625	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
MXRA5	25878	hgsc.bcm.edu;ucsc.edu	37	X	3240485	3240494	+	Frame_Shift_Del	DEL	TGGAGTGTGT	TGGAGTGTGT	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	TGGAGTGTGT	TGGAGTGTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
MYH2	4620	hgsc.bcm.edu;ucsc.edu	37	17	10427079	10427079	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
MYO16	23026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	109672228	109672228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
MYOF	26509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	95076526	95076526	+	Silent	SNP	G	G	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
OAF	220323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	120096481	120096481	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
OAS3	4940	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	113379477	113379477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
ODZ1	0	hgsc.bcm.edu	37	X	123654451	123654452	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
OR5D14	219436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55563209	55563209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
OR5T2	219464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	55999686	55999686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
OR7A10	390892	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	14952067	14952067	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
OTUD4	54726	broad.mit.edu;hgsc.bcm.edu	37	4	146063450	146063450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
PABPC5	140886	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	90691350	90691350	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
PBRM1	55193	hgsc.bcm.edu;ucsc.edu	37	3	52595863	52595864	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	TC	TC	TC	-	TC	TC	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
PIK3AP1	118788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	98405300	98405300	+	Silent	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
PRKDC	5591	hgsc.bcm.edu	37	8	48805816	48805817	+	Frame_Shift_Ins	INS	-	-	G	rs11411516	bycluster;by1000genomes	TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
PRMT6	55170	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	107599560	107599560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
QTRT1	81890	hgsc.bcm.edu;ucsc.edu	37	19	10818039	10818039	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
SIPA1L2	57568	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	232538143	232538143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
SLC7A1	6541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	30098300	30098300	+	Silent	SNP	G	G	A	rs138795948	byfrequency	TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
SLC7A4	6545	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	21385823	21385823	+	Silent	SNP	C	C	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
SOX7	83595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	10583337	10583337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
SRSF4	6429	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	29475063	29475063	+	Silent	SNP	G	G	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
THSD7B	80731	hgsc.bcm.edu;ucsc.edu	37	2	137917883	137917884	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
TMEM184A	202915	hgsc.bcm.edu	37	7	1586653	1586654	+	In_Frame_Ins	INS	-	-	GCC	rs112463195	bycluster;by1000genomes	TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
TYRO3	7301	hgsc.bcm.edu	37	15	41865311	41865311	+	Splice_Site	SNP	T	T	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
VEZT	55591	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	95676229	95676229	+	Silent	SNP	A	A	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
ZFPL1	7542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64854837	64854837	+	Silent	SNP	C	C	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
ZSCAN5A	79149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	56732944	56732944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
AGRN	375790	broad.mit.edu	37	1	985094	985094	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
BCDIN3D	144233	broad.mit.edu	37	12	50236870	50236870	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
FGF6	2251	broad.mit.edu	37	12	4554409	4554409	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
GBA	2629	broad.mit.edu	37	1	155205493	155205493	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
HSPA7	3311	broad.mit.edu	37	1	161576641	161576641	+	Silent	SNP	G	T	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
PURG	29942	broad.mit.edu	37	8	30889379	30889379	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
SBK1	388228	broad.mit.edu	37	16	28331871	28331871	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
SLC5A2	6524	broad.mit.edu	37	16	31496212	31496212	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
SLC6A8	6535	broad.mit.edu	37	X	152954167	152954167	+	Silent	SNP	C	A	A	novel		TCGA-B0-5110-01A-01D-1421-08	TCGA-B0-5110-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	527f7650-6818-4c7c-8e5f-4c9e8d3c0108	2b88b60a-5378-4380-9f83-10825a34e71c	
