Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA13	154664	genome.wustl.edu	37	7	48390275	48390275	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	7	48390275	48390275	G	A	SNP	ABCA13	NM_152701.3	human	genbank	58_37c	+1	reviewed	missense	c.10240	p.A3414T	0.001	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCA4	24	genome.wustl.edu	37	1	94505646	94505646	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	94505646	94505646	G	A	SNP	ABCA4	NM_000350.2	human	genbank	58_37c	-1	reviewed	missense	c.3560	p.T1187M	0.138	NULL	HMMPfam_ABC_tran,HMMSmart_AAA,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ADAMTS12	81792	genome.wustl.edu	37	5	33642057	33642057	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	5	33642057	33642057	A	T	SNP	ADAMTS12	NM_030955.2	human	genbank	58_37c	-1	reviewed	missense	c.1576	p.C526S	1.000	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADAMTSL3	57188	genome.wustl.edu	37	15	84651068	84651068	+	Silent	SNP	G	G	A	rs139222116	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	15	84651068	84651068	G	A	SNP	ADAMTSL3	NM_207517.2	human	genbank	58_37c	+1	validated	silent	c.2688	p.P896	0.942	NULL	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ATP10A	57194	genome.wustl.edu	37	15	25925334	25925334	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	15	25925334	25925334	G	T	SNP	ATP10A	NM_024490.3	human	genbank	58_37c	-1	reviewed	missense	c.3800	p.A1267D	0.163	NULL	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660	-	no_errors
ATP7B	540	genome.wustl.edu	37	13	52508972	52508972	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	13	52508972	52508972	G	A	SNP	ATP7B	NM_000053.2	human	genbank	58_37c	-1	reviewed	missense	c.4318	p.R1440W	0.655	NULL	HMMPfam_Hydrolase,HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,HMMPfam_E1-E2_ATPase,PatternScan_HMA_1,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
AURKC	6795	genome.wustl.edu	37	19	57743593	57743593	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	19	57743593	57743593	G	C	SNP	AURKC	NM_001015878.1	human	genbank	58_37c	+1	reviewed	splice_site	c.296+1	e3+1	1.000	-	-	-	no_errors
C10orf128	170371	genome.wustl.edu	37	10	50369647	50369647	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	10	50369647	50369647	T	G	SNP	C10orf128	NM_001010863.1	human	genbank	58_37c	-1	provisional	missense	c.290	p.K97T	0.003	NULL	NULL	-	no_errors
CAMSAP1	157922	genome.wustl.edu	37	9	138714775	138714775	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	9	138714775	138714775	C	T	SNP	CAMSAP1	NM_015447.3	human	genbank	58_37c	-1	validated	missense	c.1732	p.G578R	0.562	NULL	superfamily_PRC-barrel domain,HMMPfam_DUF1781,superfamily_Calponin-homology domain CH-domain	-	no_errors
CDK5RAP2	55755	genome.wustl.edu	37	9	123232463	123232463	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	9	123232463	123232463	A	C	SNP	CDK5RAP2	NM_018249.4	human	genbank	58_37c	-1	reviewed	missense	c.1894	p.Y632D	1.000	NULL	HMMPfam_Microtub_assoc	-	no_errors
CHD4	1108	genome.wustl.edu	37	12	6696712	6696712	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	12	6696712	6696712	T	C	SNP	CHD4	NM_001273.2	human	genbank	58_37c	-1	reviewed	silent	c.3717	p.K1239	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00249,PatternScan_DEAH_ATP_HELICASE,HMMPfam_DUF1086,HMMPfam_DUF1087,superfamily_FYVE/PHD zinc finger,HMMPfam_CHDCT2,HMMPfam_CHDNT,HMMSmart_SM00487,superfamily_Chromo domain-like,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CHN2	1124	genome.wustl.edu	37	7	29407574	29407574	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	7	29407574	29407574	C	T	SNP	CHN2	NM_004067.2	human	genbank	58_37c	+1	reviewed	missense	c.115	p.R39C	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_GTPase activation domain GAP,superfamily_SH2 domain,superfamily_Cysteine-rich domain	-	no_errors
CST7	8530	genome.wustl.edu	37	20	24930099	24930099	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	20	24930099	24930099	C	T	SNP	CST7	NM_003650.3	human	genbank	58_37c	+1	reviewed	silent	c.24	p.H8	0.000	NULL	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin	-	no_errors
CT47B1	0	genome.wustl.edu	37	X	120009253	120009253	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	X	120009253	120009253	G	A	SNP	CT47B1	NM_001145718.1	human	genbank	58_37c	-1	validated	missense	c.272	p.T91M	0.000	NULL	NULL	-	no_errors
CTDP1	9150	genome.wustl.edu	37	18	77475211	77475211	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	18	77475211	77475211	C	T	SNP	CTDP1	NM_004715.3	human	genbank	58_37c	+1	reviewed	missense	c.1751	p.T584M	0.010	NULL	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMPfam_NIF,HMMSmart_SM00577,HMMPfam_FCP1_C,superfamily_HAD-like	-	no_errors
DLGAP1	9229	genome.wustl.edu	37	18	3567558	3567558	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	18	3567558	3567558	C	A	SNP	DLGAP1	NM_004746.2	human	genbank	58_37c	-1	provisional	missense	c.1987	p.D663Y	1.000	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
DNAJC13	23317	genome.wustl.edu	37	3	132245098	132245098	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	3	132245098	132245098	G	A	SNP	DNAJC13	NM_015268.3	human	genbank	58_37c	+1	validated	silent	c.6354	p.Q2118	1.000	superfamily_ARM repeat	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_ARM repeat	-	no_errors
DNASE2	1777	genome.wustl.edu	37	19	12989580	12989580	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	19	12989580	12989580	C	-	DEL	DNASE2	NM_001375.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.415	p.A139fs	0.001	HMMPfam_DNase_II	PatternScan_AKH,HMMPfam_DNase_II	-	no_errors
ENSG00000200238	0	genome.wustl.edu	37	3	56219180	56219184	+	RNA	DEL	AAGCT	AAGCT	-	rs138594236	byCluster;by1000genomes	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	AAGCT	AAGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	3	56219180	56219184	AAGCT	-	DEL	ENSG00000200238	ENST00000363368	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.010:0.007:0.002:0.002:0.002	-	-	-	no_errors
ENSG00000205046	0	genome.wustl.edu	37	11	51459467	51459467	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	11	51459467	51459467	G	A	SNP	OR4A5	NM_001005272.3	human	genbank	58_37c	-1	validated	5_prime_flanking_region	c.-47072	NULL	0.003	-	-	-	no_errors
ENSG00000245309	0	genome.wustl.edu	37	6	26234493	26234493	+	RNA	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	6	26234493	26234493	G	A	SNP	HIST1H1D	NM_005320.2	human	genbank	58_37c	-1	reviewed	3_prime_untranslated_region	c.*3	NULL	0.000	-	-	-	no_errors
ENSG00000247772	0	genome.wustl.edu	37	11	47377894	47377895	+	RNA	DEL	CA	CA	-	rs141558426	byCluster;by1000genomes	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	11	47377894	47377895	CA	-	DEL	SPI1	NM_001080547.1	human	genbank	58_37c	-1	reviewed	intronic	c.497-798_497-797	e5-797	0.007:0.007	-	-	-	no_errors
EVC2	132884	genome.wustl.edu	37	4	5624559	5624559	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	4	5624559	5624559	G	A	SNP	EVC2	NM_147127.4	human	genbank	58_37c	-1	reviewed	missense	c.2206	p.L736F	0.933	NULL	NULL	-	no_errors
FAM171A1	221061	genome.wustl.edu	37	10	15325912	15325912	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	10	15325912	15325912	G	-	DEL	FAM171A1	NM_001010924.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.290	p.P97fs	1.000	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
FAM82B	51115	genome.wustl.edu	37	8	87498796	87498796	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	8	87498796	87498796	C	A	SNP	FAM82B	NM_016033.2	human	genbank	58_37c	-1	validated	nonsense	c.412	p.E138*	0.968	superfamily_Prenyl_trans	superfamily_Prenyl_trans	-	no_errors
FBXO7	25793	genome.wustl.edu	37	22	32881084	32881084	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	22	32881084	32881084	G	A	SNP	FBXO7	NM_012179.3	human	genbank	58_37c	+1	reviewed	silent	c.675	p.P225	0.011	NULL	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383	-	no_errors
GJA9	81025	genome.wustl.edu	37	1	39340570	39340570	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	39340570	39340570	T	C	SNP	GJA9	NM_030772.3	human	genbank	58_37c	-1	provisional	missense	c.1201	p.M401V	0.000	NULL	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC	-	no_errors
HYDIN	54768	genome.wustl.edu	37	16	71103181	71103181	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	16	71103181	71103181	C	A	SNP	HYDIN	NM_032821.2	human	genbank	58_37c	-1	validated	missense	c.1963	p.A655S	0.980	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
IGSF9B	22997	genome.wustl.edu	37	11	133801654	133801654	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	11	133801654	133801654	G	A	SNP	IGSF9B	NM_014987.1	human	genbank	58_37c	-1	validated	nonsense	c.1147	p.R383*	1.000	HMMSmart_IG,superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
IL34	146433	genome.wustl.edu	37	16	70690933	70690933	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	16	70690933	70690933	C	T	SNP	IL34	NM_152456.2	human	genbank	58_37c	+1	validated	missense	c.311	p.S104L	0.002	NULL	NULL	-	no_errors
ITPR2	3709	genome.wustl.edu	37	12	26752146	26752146	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	12	26752146	26752146	A	T	SNP	ITPR2	NM_002223.2	human	genbank	58_37c	-1	validated	missense	c.3934	p.F1312I	1.000	HMMPfam_RYDR_ITPR	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2	-	no_errors
IVNS1ABP	10625	genome.wustl.edu	37	1	185269464	185269465	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	185269464	185269465	AT	-	DEL	IVNS1ABP	NM_006469.4	human	genbank	58_37c	-1	validated	frame_shift_del	c.1254_1253	p.Y418fs	1.000:1.000	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
KANK4	163782	genome.wustl.edu	37	1	62734091	62734091	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	62734091	62734091	T	C	SNP	KANK4	NM_181712.4	human	genbank	58_37c	-1	validated	missense	c.2099	p.D700G	0.003	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
KCNK18	338567	genome.wustl.edu	37	10	118969429	118969429	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	10	118969429	118969429	G	T	SNP	KCNK18	NM_181840.1	human	genbank	58_37c	+1	provisional	missense	c.774	p.L258F	0.000	superfamily_SSF81324	HMMPfam_Ion_trans_2,superfamily_SSF81324	-	no_errors
KCNQ3	3786	genome.wustl.edu	37	8	133187705	133187705	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	8	133187705	133187705	C	G	SNP	KCNQ3	NM_004519.2	human	genbank	58_37c	-1	reviewed	missense	c.928	p.G310R	1.000	HMMPfam_Ion_trans,superfamily_SSF81324	HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_SSF81324	-	no_errors
LYN	4067	genome.wustl.edu	37	8	56922638	56922638	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	8	56922638	56922638	C	A	SNP	LYN	NM_002350.2	human	genbank	58_37c	+1	validated	missense	c.1508	p.A503D	1.000	superfamily_Protein kinase-like (PK-like)	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain	-	no_errors
MECP2	4204	genome.wustl.edu	37	X	153296841	153296841	+	Silent	SNP	G	G	A	rs61748386	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	X	153296841	153296841	G	A	SNP	MECP2	NM_001110792.1	human	genbank	58_37c	-1	reviewed	silent	c.474	p.G158	0.999	HMMPfam_MBD,HMMSmart_MBD,superfamily_DNA-binding_integrase-type	HMMPfam_MBD,HMMSmart_MBD,superfamily_DNA-binding_integrase-type,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
MLH3	27030	genome.wustl.edu	37	14	75498872	75498872	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	14	75498872	75498872	C	G	SNP	MLH3	NM_001040108.1	human	genbank	58_37c	-1	reviewed	missense	c.3726	p.E1242D	1.000	HMMPfam_MutL_C	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_DNA_mis_repair,PatternScan_DNA_MISMATCH_REPAIR_1,HMMPfam_MutL_C,superfamily_Ribosomal protein S5 domain 2-like	-	no_errors
MPDZ	8777	genome.wustl.edu	37	9	13206024	13206025	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	9	13206024	13206025	CA	-	DEL	MPDZ	NM_003829.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.1365_1364	p.V455fs	0.692:0.996	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_L27_2,superfamily_L27 domain	-	no_errors
MRE11A	4361	genome.wustl.edu	37	11	94194141	94194141	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	11	94194141	94194141	T	C	SNP	MRE11A	NM_005591.3	human	genbank	58_37c	-1	reviewed	silent	c.1287	p.V429	0.980	HMMPfam_Mre11_DNA_bind	HMMPfam_Metallophos,HMMPfam_Mre11_DNA_bind,superfamily_Metallo-dependent phosphatases	-	no_errors
MTMR15	22909	genome.wustl.edu	37	15	31202935	31202935	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	15	31202935	31202935	C	T	SNP	MTMR15	NM_014967.4	human	genbank	58_37c	+1	reviewed	silent	c.1494	p.D498	0.001	NULL	HMMSmart_SM00734,HMMPfam_VRR_NUC	-	no_errors
MYPN	84665	genome.wustl.edu	37	10	69948709	69948709	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	10	69948709	69948709	G	C	SNP	MYPN	NM_032578.2	human	genbank	58_37c	+1	validated	missense	c.2751	p.E917D	1.000	NULL	PatternScan_ER_TARGET,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
NPY	4852	genome.wustl.edu	37	7	24331283	24331283	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	7	24331283	24331283	C	T	SNP	NPY	NM_000905.3	human	genbank	58_37c	+1	reviewed	missense	c.271	p.L91F	1.000	NULL	HMMPfam_Hormone_3,HMMSmart_SM00309,PatternScan_PANCREATIC_HORMONE_1	-	no_errors
NSDHL	50814	genome.wustl.edu	37	X	152036194	152036194	+	Nonsense_Mutation	SNP	C	C	T	rs150512355	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	X	152036194	152036194	C	T	SNP	NSDHL	NM_001129765.1	human	genbank	58_37c	+1	reviewed	nonsense	c.766	p.R256*	0.001	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd	-	no_errors
OR1M1	125963	genome.wustl.edu	37	19	9204487	9204487	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	19	9204487	9204487	C	A	SNP	OR1M1	NM_001004456.1	human	genbank	58_37c	+1	provisional	nonsense	c.567	p.C189*	0.083	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR2D3	120775	genome.wustl.edu	37	11	6943082	6943082	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	11	6943082	6943082	A	G	SNP	OR2D3	NM_001004684.1	human	genbank	58_37c	+1	provisional	missense	c.850	p.K284E	0.004	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR5D14	219436	genome.wustl.edu	37	11	55563102	55563102	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	11	55563102	55563102	A	T	SNP	OR5D14	NM_001004735.1	human	genbank	58_37c	+1	provisional	missense	c.71	p.K24M	0.138	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OTOP2	92736	genome.wustl.edu	37	17	72929557	72929557	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	17	72929557	72929557	A	T	SNP	OTOP2	NM_178160.2	human	genbank	58_37c	+1	validated	missense	c.1606	p.I536F	1.000	HMMPfam_DUF270	HMMPfam_DUF270	-	no_errors
PARK2	5071	genome.wustl.edu	37	6	161781222	161781222	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	6	161781222	161781222	C	T	SNP	PARK2	NM_004562.2	human	genbank	58_37c	-1	reviewed	missense	c.1183	p.E395K	0.268	NULL	HMMPfam_ubiquitin,HMMSmart_SM00213,HMMPfam_IBR,HMMSmart_SM00647,superfamily_Ubiquitin-like,superfamily_RING/U-box	-	no_errors
PARS2	25973	genome.wustl.edu	37	1	55224704	55224704	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	55224704	55224704	C	T	SNP	PARS2	NM_152268.3	human	genbank	58_37c	-1	validated	missense	c.131	p.R44H	0.201	NULL	HMMPfam_tRNA-synt_2b,HMMPfam_HGTP_anticodon,superfamily_Anticodon-binding domain of Class II aaRS,superfamily_Class II aaRS and biotin synthetases	-	no_errors
PELP1	27043	genome.wustl.edu	37	17	4576579	4576579	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	17	4576579	4576579	G	A	SNP	PELP1	NM_014389.2	human	genbank	58_37c	-1	validated	missense	c.1811	p.A604V	1.000	HMMPfam_NUC202	HMMPfam_NUC201,HMMPfam_NUC202	-	no_errors
PHC1B	0	genome.wustl.edu	37	12	55805942	55805942	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	12	55805942	55805942	C	T	SNP	PHC1B	ENST00000326184	human	ensembl	58_37c	-1	known	missense	c.2579	p.R860H	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_zf-FCS,superfamily_SAM/Pointed domain	-	no_errors
PIAS3	10401	genome.wustl.edu	37	1	145578592	145578592	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	1	145578592	145578592	C	T	SNP	PIAS3	ENST00000369299	human	ensembl	58_37c	+1	known	silent	c.555	p.G185	0.206	NULL	HMMPfam_SAP,HMMSmart_SAP	-	no_errors
PRDM1	639	genome.wustl.edu	37	6	106547224	106547224	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	6	106547224	106547224	A	G	SNP	PRDM1	NM_001198.3	human	genbank	58_37c	+1	reviewed	missense	c.461	p.E154G	1.000	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199	HMMPfam_SET,HMMSmart_SET,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667,superfamily_SSF82199	-	no_errors
PRICKLE3	4007	genome.wustl.edu	37	X	49032341	49032341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	X	49032341	49032341	C	T	SNP	PRICKLE3	NM_006150.3	human	genbank	58_37c	-1	reviewed	missense	c.1529	p.R510H	0.000	NULL	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_PET,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
RBM26	64062	genome.wustl.edu	37	13	79911273	79911273	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	13	79911273	79911273	C	T	SNP	RBM26	ENST00000411438	human	ensembl	58_37c	-1	known	missense	c.95	p.R32Q	0.927	NULL	NULL	-	no_errors
RNF10	9921	genome.wustl.edu	37	12	121002888	121002888	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	12	121002888	121002888	G	A	SNP	RNF10	NM_014868.4	human	genbank	58_37c	+1	reviewed	missense	c.1679	p.R560H	1.000	NULL	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
SERPINB3	6317	genome.wustl.edu	37	18	61322965	61322965	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	18	61322965	61322965	G	C	SNP	SERPINB3	NM_006919.2	human	genbank	58_37c	-1	validated	missense	c.1099	p.H367D	1.000	HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins	HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins	-	no_errors
SP3	6670	genome.wustl.edu	37	2	174820722	174820722	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	2	174820722	174820722	A	C	SNP	SP3	NM_003111.4	human	genbank	58_37c	-1	reviewed	missense	c.518	p.I173R	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SRCAP	10847	genome.wustl.edu	37	16	30750833	30750833	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	16	30750833	30750833	C	G	SNP	SRCAP	NM_006662.2	human	genbank	58_37c	+1	validated	missense	c.9472	p.Q3158E	0.989	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,HMMPfam_AT_hook,HMMSmart_SM00384,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
STAG2	10735	genome.wustl.edu	37	X	123195113	123195113	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	X	123195113	123195113	G	A	SNP	STAG2	NM_001042749.1	human	genbank	58_37c	+1	validated	missense	c.1456	p.D486N	1.000	superfamily_ARM-type_fold	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors
STAG3L3	442578	genome.wustl.edu	37	7	72470053	72470053	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	7	72470053	72470053	G	T	SNP	STAG3L3	NM_001013739.2	human	genbank	58_37c	-1	validated	silent	c.288	p.I96	0.980	NULL	NULL	-	no_errors
STAT4	6775	genome.wustl.edu	37	2	191896229	191896229	+	Silent	SNP	T	T	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	2	191896229	191896229	T	A	SNP	STAT4	NM_003151.2	human	genbank	58_37c	-1	reviewed	silent	c.2058	p.T686	1.000	superfamily_SSF55550	HMMPfam_SH2,HMMSmart_SH2,superfamily_P53_like_DNA_bnd,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_SSF55550	-	no_errors
TBC1D28	254272	genome.wustl.edu	37	17	18544650	18544650	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	17	18544650	18544650	C	T	SNP	TBC1D28	NM_001039397.2	human	genbank	58_37c	-1	validated	missense	c.16	p.D6N	0.665	NULL	superfamily_RabGAP_TBC	-	no_errors
TMEM182	130827	genome.wustl.edu	37	2	103414461	103414461	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	2	103414461	103414461	T	C	SNP	TMEM182	NM_144632.3	human	genbank	58_37c	+1	validated	splice_site	c.469+2	e4+2	1.000	-	-	-	no_errors
TMTC4	84899	genome.wustl.edu	37	13	101288959	101288959	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	13	101288959	101288959	C	A	SNP	TMTC4	NM_032813.2	human	genbank	58_37c	-1	validated	missense	c.1029	p.L343F	1.000	HMMPfam_DUF1736	HMMPfam_TPR_1,HMMPfam_TPR_2,HMMPfam_DUF1736,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578526	7578526	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	17	7578526	7578526	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.404	p.C135Y	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRO	7216	genome.wustl.edu	37	X	54955699	54955699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	X	54955699	54955699	G	A	SNP	TRO	NM_001039705.1	human	genbank	58_37c	+1	reviewed	missense	c.2542	p.G848S	0.937	NULL	HMMPfam_MAGE	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179641907	179641907	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	2	179641907	179641907	T	A	SNP	TTN	NM_133379.3	human	genbank	58_37c	-1	reviewed	missense	c.4783	p.I1595F	1.000	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726	PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726	-	no_errors
UGT8	7368	genome.wustl.edu	37	4	115544067	115544067	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	4	115544067	115544067	C	T	SNP	UGT8	NM_001128174.1	human	genbank	58_37c	+1	validated	silent	c.31	p.L11	1.000	NULL	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
UNC93A	54346	genome.wustl.edu	37	6	167709557	167709557	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	6	167709557	167709557	G	A	SNP	UNC93A	NM_018974.3	human	genbank	58_37c	+1	validated	missense	c.307	p.G103R	0.988	HMMPfam_DUF895,superfamily_MFS_gen_substrate_transporter	HMMPfam_DUF895,superfamily_MFS_gen_substrate_transporter	-	no_errors
UTRN	7402	genome.wustl.edu	37	6	144832252	144832252	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	6	144832252	144832252	C	G	SNP	UTRN	NM_007124.2	human	genbank	58_37c	+1	reviewed	missense	c.4937	p.T1646S	0.915	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF47473	-	no_errors
VCPIP1	80124	genome.wustl.edu	37	8	67547342	67547342	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	d2291482-9bbb-4f8f-a65b-c0737cf3acea	eba08b28-762e-4d9d-a5ee-c180ce7621ec	8	67547342	67547342	G	A	SNP	VCPIP1	NM_025054.4	human	genbank	58_37c	-1	validated	silent	c.3063	p.N1021	0.999	NULL	HMMPfam_OTU	-	no_errors
