Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA12	26154	genome.wustl.edu	37	2	215813332	215813332	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	2	215813332	215813332	C	G	SNP	ABCA12	NM_173076.2	human	genbank	58_37c	-1	reviewed	missense	c.7092	p.K2364N	0.823	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACSM5	54988	genome.wustl.edu	37	16	20442596	20442596	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	16	20442596	20442596	G	A	SNP	ACSM5	NM_017888.2	human	genbank	58_37c	+1	validated	missense	c.1261	p.V421I	0.473	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors
ARHGEF17	9828	genome.wustl.edu	37	11	73064010	73064010	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	11	73064010	73064010	C	T	SNP	ARHGEF17	NM_014786.3	human	genbank	58_37c	+1	validated	nonsense	c.3406	p.Q1136*	1.000	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_PH domain-like	-	no_errors
ATG16L2	89849	genome.wustl.edu	37	11	72537859	72537859	+	Missense_Mutation	SNP	C	C	T	rs181866073	by1000genomes	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	11	72537859	72537859	C	T	SNP	ATG16L2	NM_033388.1	human	genbank	58_37c	+1	validated	missense	c.1357	p.R453C	0.214	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_ATG16,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
B4GALNT2	124872	genome.wustl.edu	37	17	47236488	47236488	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	17	47236488	47236488	C	A	SNP	B4GALNT2	NM_153446.2	human	genbank	58_37c	+1	validated	silent	c.768	p.I256	0.917	NULL	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
C5orf13	9315	genome.wustl.edu	37	5	111066712	111066712	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	5	111066712	111066712	C	T	SNP	C5orf13	NM_001142475.1	human	genbank	58_37c	-1	validated	missense	c.245	p.R82H	1.000	NULL	NULL	-	no_errors
C6orf10	10665	genome.wustl.edu	37	6	32298378	32298378	+	Splice_Site	SNP	G	G	T	rs149522773	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	6	32298378	32298378	G	T	SNP	C6orf10	ENST00000422130	human	ensembl	58_37c	-1	known	splice_site	c.451-2	e20-2	0.979	-	-	-	no_errors
DENND3	22898	genome.wustl.edu	37	8	142161880	142161880	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	8	142161880	142161880	G	A	SNP	DENND3	NM_014957.2	human	genbank	58_37c	+1	validated	missense	c.778	p.A260T	1.000	HMMPfam_DENN,HMMSmart_SM00799	HMMPfam_DENN,HMMSmart_SM00799,HMMSmart_SM00320,HMMPfam_dDENN,HMMSmart_SM00801,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ENSG00000227572	0	genome.wustl.edu	37	2	118850876	118850876	+	Missense_Mutation	SNP	T	T	G	rs111499188	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	2	118850876	118850876	T	G	SNP	ENSG00000227572	ENST00000458348	human	ensembl	58_37c	+1	known	missense	c.39	p.D13E	0.033	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000243979	0	genome.wustl.edu	37	1	109535053	109535053	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	1	109535053	109535053	T	G	SNP	ENSG00000244716	ENST00000414070	human	ensembl	58_37c	+1	known	3_prime_untranslated_region	c.*109535053	NULL	1.000	-	-	-	no_coding_region:pseudogene
FIP1L1	81608	genome.wustl.edu	37	4	54319224	54319224	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	4	54319224	54319224	C	A	SNP	FIP1L1	NM_030917.3	human	genbank	58_37c	+1	reviewed	silent	c.1423	p.R475	0.990	NULL	HMMPfam_Fip1	-	no_errors
GABRB2	2561	genome.wustl.edu	37	5	160753407	160753407	+	Missense_Mutation	SNP	G	G	A	rs140795978	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	5	160753407	160753407	G	A	SNP	GABRB2	NM_021911.2	human	genbank	58_37c	-1	reviewed	missense	c.1159	p.R387W	1.000	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
GPR125	166647	genome.wustl.edu	37	4	22390729	22390729	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	4	22390729	22390729	C	A	SNP	GPR125	NM_145290.2	human	genbank	58_37c	-1	validated	missense	c.2705	p.S902I	1.000	HMMPfam_7tm_2	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_7tm_2,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00409,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
HSPD1	3329	genome.wustl.edu	37	2	198352668	198352668	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	2	198352668	198352668	T	G	SNP	HSPD1	NM_002156.4	human	genbank	58_37c	-1	reviewed	missense	c.1483	p.M495L	0.632	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,PatternScan_CHAPERONINS_CPN60,superfamily_SSF52029,superfamily_SSF54849	-	no_errors
ITGA2	3673	genome.wustl.edu	37	5	52382807	52382807	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	5	52382807	52382807	C	T	SNP	ITGA2	NM_002203.3	human	genbank	58_37c	+1	reviewed	missense	c.3284	p.T1095M	0.380	superfamily_Integrin domains	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_vWA-like,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
ITGB1	3688	genome.wustl.edu	37	10	33217124	33217124	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	10	33217124	33217124	T	G	SNP	ITGB1	NM_033667.2	human	genbank	58_37c	-1	reviewed	missense	c.445	p.M149L	1.000	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,HMMSmart_PSI,HMMPfam_Integrin_B_tail,superfamily_Integrin_bsu_tail,PatternScan_EGF_1,HMMPfam_EGF_2,HMMPfam_Integrin_b_cyt,PatternScan_INTEGRIN_BETA,superfamily_SSF53300,superfamily_SSF57196,superfamily_SSF69179	-	no_errors
KIAA0907	22889	genome.wustl.edu	37	1	155886454	155886454	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	1	155886454	155886454	C	T	SNP	KIAA0907	NM_014949.2	human	genbank	58_37c	-1	predicted	silent	c.1515	p.K505	1.000	NULL	superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
KIAA1109	84162	genome.wustl.edu	37	4	123193467	123193467	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	4	123193467	123193467	C	T	SNP	KIAA1109	NM_015312.3	human	genbank	58_37c	+1	reviewed	missense	c.8353	p.R2785C	1.000	NULL	PatternScan_ASP_PROTEASE,HMMPfam_FSA_C	-	no_errors
MAP1A	4130	genome.wustl.edu	37	15	43818899	43818899	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	15	43818899	43818899	G	A	SNP	MAP1A	NM_002373.5	human	genbank	58_37c	+1	reviewed	missense	c.5228	p.R1743Q	0.478	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MAP7	9053	genome.wustl.edu	37	6	136686953	136686953	+	Frame_Shift_Del	DEL	A	A	-	rs34345049	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	6	136686953	136686953	A	-	DEL	MAP7	NM_003980.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1193	p.L398fs	0.000	NULL	HMMPfam_MAP7	-	no_errors
MAPK4	5596	genome.wustl.edu	37	18	48190626	48190626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	18	48190626	48190626	G	A	SNP	MAPK4	NM_002747.3	human	genbank	58_37c	+1	reviewed	missense	c.298	p.V100M	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
OR2T4	127074	genome.wustl.edu	37	1	248525348	248525348	+	Missense_Mutation	SNP	G	G	A	rs141849195	byFrequency	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	1	248525348	248525348	G	A	SNP	OR2T4	NM_001004696.1	human	genbank	58_37c	+1	provisional	missense	c.466	p.V156M	0.575	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR5K2	402135	genome.wustl.edu	37	3	98216663	98216663	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	3	98216663	98216663	G	A	SNP	OR5K2	NM_001004737.1	human	genbank	58_37c	+1	provisional	missense	c.139	p.A47T	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCDHA5	56143	genome.wustl.edu	37	5	140202966	140202966	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	5	140202966	140202966	G	A	SNP	PCDHA5	NM_018908.2	human	genbank	58_37c	+1	reviewed	missense	c.1606	p.A536T	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PCNT	5116	genome.wustl.edu	37	21	47754627	47754627	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	21	47754627	47754627	G	A	SNP	PCNT	NM_006031.5	human	genbank	58_37c	+1	reviewed	missense	c.584	p.R195H	0.008	NULL	HMMPfam_PACT_coil_coil	-	no_errors
PIKFYVE	200576	genome.wustl.edu	37	2	209190253	209190253	+	Silent	SNP	C	C	T	rs61752187	byCluster;byFrequency	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	2	209190253	209190253	C	T	SNP	PIKFYVE	NM_015040.3	human	genbank	58_37c	+1	reviewed	silent	c.2718	p.Y906	0.000	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_DEP,HMMSmart_SM00049,HMMPfam_Cpn60_TCP1,HMMPfam_PIP5K,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00330,superfamily_""Winged helix"" DNA-binding domain,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like,superfamily_SAICAR synthase-like"	-	no_errors
PLCZ1	89869	genome.wustl.edu	37	12	18876408	18876408	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	12	18876408	18876408	C	T	SNP	PLCZ1	NM_033123.2	human	genbank	58_37c	-1	provisional	silent	c.204	p.T68	0.226	superfamily_EF-hand	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand	-	no_errors
POLR1A	25885	genome.wustl.edu	37	2	86258493	86258493	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	2	86258493	86258493	T	C	SNP	POLR1A	NM_015425.3	human	genbank	58_37c	-1	validated	missense	c.4538	p.D1513G	0.983	HMMPfam_RNA_pol_Rpb1_5,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	-	no_errors
POM121L10P	0	genome.wustl.edu	37	22	25041412	25041412	+	RNA	SNP	T	T	C	rs57463766	byCluster;by1000genomes	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	22	25041412	25041412	T	C	SNP	POM121L10P	NR_024593.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
RAB25	57111	genome.wustl.edu	37	1	156038083	156038083	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	1	156038083	156038083	G	A	SNP	RAB25	NM_020387.2	human	genbank	58_37c	+1	provisional	missense	c.262	p.A88T	1.000	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RASGRP1	10125	genome.wustl.edu	37	15	38805032	38805032	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	15	38805032	38805032	C	T	SNP	RASGRP1	NM_005739.3	human	genbank	58_37c	-1	reviewed	silent	c.801	p.T267	1.000	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF	HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_RasGEF,HMMSmart_SM00147,HMMSmart_SM00054,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Ras GEF,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Cysteine-rich domain	-	no_errors
RBM33	155435	genome.wustl.edu	37	7	155493674	155493674	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	7	155493674	155493674	C	G	SNP	RBM33	ENST00000392759	human	ensembl	58_37c	+1	known	missense	c.895	p.L299V	0.001	NULL	NULL	-	no_errors
SEC24B	10427	genome.wustl.edu	37	4	110442693	110442693	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	4	110442693	110442693	C	G	SNP	SEC24B	NM_006323.2	human	genbank	58_37c	+1	reviewed	missense	c.2419	p.R807G	1.000	HMMPfam_Sec23_trunk,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24	PatternScan_MIP,HMMPfam_zf-Sec23_Sec24,superfamily_Zn-finger domain of Sec23/24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24,superfamily_C-terminal gelsolin-like domain of Sec23/24	-	no_errors
SERPINB7	8710	genome.wustl.edu	37	18	61463607	61463607	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	18	61463607	61463607	T	C	SNP	SERPINB7	NM_001040147.1	human	genbank	58_37c	+1	validated	silent	c.444	p.N148	0.085	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
STRBP	55342	genome.wustl.edu	37	9	125923337	125923337	+	Silent	SNP	C	C	T	rs150511866	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	9	125923337	125923337	C	T	SNP	STRBP	NM_018387.4	human	genbank	58_37c	-1	validated	silent	c.546	p.S182	1.000	HMMPfam_DZF,HMMSmart_SM00572	HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_DZF,HMMSmart_SM00572,superfamily_dsRNA-binding domain-like	-	no_errors
SYT17	51760	genome.wustl.edu	37	16	19195122	19195133	+	In_Frame_Del	DEL	ACCGTGCGCGTG	ACCGTGCGCGTG	-	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	ACCGTGCGCGTG	ACCGTGCGCGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	16	19195122	19195133	ACCGTGCGCGTG	-	DEL	SYT17	NM_016524.2	human	genbank	58_37c	+1	validated	in_frame_del	c.604_615	p.TVRV202in_frame_del	0.395:0.395:0.347:0.999:0.998:0.242:0.052:0.391:0.298:0.996:1.000:1.000	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
TATDN2	9797	genome.wustl.edu	37	3	10301826	10301826	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	3	10301826	10301826	T	C	SNP	TATDN2	NM_014760.3	human	genbank	58_37c	+1	validated	silent	c.420	p.D140	1.000	NULL	HMMPfam_TatD_DNase,PatternScan_TATD_2,PatternScan_TATD_3,PatternScan_TATD_1,superfamily_SSF51556	-	no_errors
TFPI2	7980	genome.wustl.edu	37	7	93518420	93518420	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	7	93518420	93518420	C	-	DEL	TFPI2	NM_006528.2	human	genbank	58_37c	-1	provisional	frame_shift_del	c.387	p.C130fs	0.000	HMMPfam_Kunitz_BPTI,HMMSmart_KU,superfamily_Prot_inh_Kunz-m	HMMPfam_Kunitz_BPTI,HMMSmart_KU,PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m	-	no_errors
TIGD2	166815	genome.wustl.edu	37	4	90035623	90035623	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	4	90035623	90035623	C	A	SNP	TIGD2	NM_145715.2	human	genbank	58_37c	+1	reviewed	missense	c.1498	p.L500M	0.998	NULL	HMMPfam_DDE,HMMSmart_CENPB,HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind	-	no_errors
TMEM48	55706	genome.wustl.edu	37	1	54293701	54293701	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	1	54293701	54293701	A	C	SNP	TMEM48	NM_018087.4	human	genbank	58_37c	-1	validated	missense	c.426	p.F142L	0.166	HMMPfam_Ndc1_Nup	HMMPfam_Ndc1_Nup	-	no_errors
TPM1	7168	genome.wustl.edu	37	15	63336291	63336291	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	15	63336291	63336291	C	-	DEL	TPM1	NM_000366.5	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.180	p.S61fs	1.000	HMMPfam_Tropomyosin	HMMPfam_Tropomyosin,PatternScan_TROPOMYOSIN	-	no_errors
TRAF6	7189	genome.wustl.edu	37	11	36518753	36518753	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	11	36518753	36518753	T	C	SNP	TRAF6	NM_004620.2	human	genbank	58_37c	-1	reviewed	missense	c.511	p.K171E	0.987	HMMPfam_zf-TRAF	HMMPfam_zf-TRAF,HMMSmart_RING,HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
TRPM6	140803	genome.wustl.edu	37	9	77423061	77423061	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	9	77423061	77423061	G	T	SNP	TRPM6	NM_017662.4	human	genbank	58_37c	-1	reviewed	silent	c.1527	p.T509	0.013	NULL	HMMPfam_Alpha_kinase,HMMSmart_SM00811,HMMPfam_Ion_trans,superfamily_Protein kinase-like (PK-like)	-	no_errors
WDR62	284403	genome.wustl.edu	37	19	36584983	36584983	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B1-01A-12W-A071-09	TCGA-BH-A0B1-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	de20290a-1560-41fd-896b-a3ae1103423e	eb76d20f-0575-49c2-a173-c370be9eef44	19	36584983	36584983	G	A	SNP	WDR62	NM_001083961.1	human	genbank	58_37c	+1	validated	missense	c.2384	p.G795E	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
