Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
MLL3	58508	genome.wustl.edu	37	7	151859200	151859200	+	Splice_Site	DEL	A	A	-	novel	unknown	TCGA-BH-A0DV-01A-21D-A12Q-09	TCGA-BH-A0DV-11A-22D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	24ee6b1d-3594-4d12-91b3-8ad1b3c98f28	6d183062-662c-4ecb-9a40-01da78c6e733	7	151859200	151859200	A	-	DEL	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	splice_site_del	c.11460+2	e43+2	1.000	-	-	-	no_errors
NUAK2	81788	genome.wustl.edu	37	1	205274440	205274440	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0DV-01A-21D-A12Q-09	TCGA-BH-A0DV-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	24ee6b1d-3594-4d12-91b3-8ad1b3c98f28	6d183062-662c-4ecb-9a40-01da78c6e733	1	205274440	205274440	C	A	SNP	NUAK2	NM_030952.1	human	genbank	58_37c	-1	provisional	missense	c.710	p.G237V	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-BH-A0DV-01A-21D-A12Q-09	TCGA-BH-A0DV-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	24ee6b1d-3594-4d12-91b3-8ad1b3c98f28	6d183062-662c-4ecb-9a40-01da78c6e733	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RSAD1	55316	genome.wustl.edu	37	17	48557115	48557115	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DV-01A-21D-A12Q-09	TCGA-BH-A0DV-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	24ee6b1d-3594-4d12-91b3-8ad1b3c98f28	6d183062-662c-4ecb-9a40-01da78c6e733	17	48557115	48557115	G	A	SNP	RSAD1	NM_018346.1	human	genbank	58_37c	+1	provisional	silent	c.261	p.G87	1.000	HMMSmart_Elp3,HMMPfam_Radical_SAM,superfamily_SSF102114	HMMSmart_Elp3,HMMPfam_Radical_SAM,HMMPfam_HemN_C,superfamily_SSF102114	-	no_errors
SHANK1	50944	genome.wustl.edu	37	19	51165616	51165616	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0DV-01A-21D-A12Q-09	TCGA-BH-A0DV-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	24ee6b1d-3594-4d12-91b3-8ad1b3c98f28	6d183062-662c-4ecb-9a40-01da78c6e733	19	51165616	51165616	C	A	SNP	SHANK1	NM_016148.2	human	genbank	58_37c	-1	validated	missense	c.6092	p.G2031V	1.000	NULL	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_SH3_2	-	no_errors
