Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AHRR	57491	genome.wustl.edu	37	5	434581	434581	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	5	434581	434581	C	G	SNP	AHRR	NM_020731.3	human	genbank	58_37c	+1	reviewed	missense	c.1792	p.P598A	0.995	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
AOAH	313	genome.wustl.edu	37	7	36552857	36552857	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	7	36552857	36552857	C	T	SNP	AOAH	ENST00000431169	human	ensembl	58_37c	-1	known	silent	c.1848	p.E616	0.604	NULL	HMMPfam_Lipase_GDSL,HMMPfam_SapB_2,HMMSmart_SM00741,superfamily_Saposin,PatternScan_EGF_1	-	no_errors
BMPER	168667	genome.wustl.edu	37	7	34192803	34192803	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	7	34192803	34192803	G	T	SNP	BMPER	NM_133468.3	human	genbank	58_37c	+1	validated	missense	c.1976	p.C659F	0.997	superfamily_Cysrich_TIL,HMMPfam_TIL	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_C8,HMMPfam_TIL	-	no_errors
CALML6	163688	genome.wustl.edu	37	1	1848228	1848228	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	1	1848228	1848228	A	G	SNP	CALML6	NM_138705.2	human	genbank	58_37c	+1	validated	silent	c.291	p.L97	0.947	HMMSmart_EFh,superfamily_SSF47473	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
DCAF8L2	347442	genome.wustl.edu	37	X	27765025	27765025	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	X	27765025	27765025	G	A	SNP	DCAF8L2	NM_001136533.1	human	genbank	58_37c	+1	provisional	missense	c.13	p.E5K	0.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
EZR	7430	genome.wustl.edu	37	6	159192434	159192434	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	6	159192434	159192434	A	-	DEL	EZR	NM_001111077.1	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.801	p.F267fs	1.000	HMMPfam_FERM_C,superfamily_SSF50729	superfamily_Moesin,HMMPfam_ERM,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF54236	-	no_errors
FAM131C	348487	genome.wustl.edu	37	1	16386385	16386385	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	1	16386385	16386385	G	A	SNP	FAM131C	NM_182623.2	human	genbank	58_37c	-1	validated	missense	c.430	p.R144C	0.508	NULL	NULL	-	no_errors
MST1P9	0	genome.wustl.edu	37	1	17083778	17083778	+	Silent	SNP	C	C	T	rs78612194	byFrequency	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	1	17083778	17083778	C	T	SNP	MST1P9	NR_002729.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
OR1N1	138883	genome.wustl.edu	37	9	125289198	125289198	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	9	125289198	125289198	G	A	SNP	OR1N1	NM_012363.1	human	genbank	58_37c	-1	provisional	silent	c.375	p.C125	0.163	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR6C1	390321	genome.wustl.edu	37	12	55714623	55714623	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	12	55714623	55714623	G	A	SNP	OR6C1	NM_001005182.1	human	genbank	58_37c	+1	provisional	silent	c.240	p.L80	0.113	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR6V1	346517	genome.wustl.edu	37	7	142749782	142749782	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	7	142749782	142749782	C	A	SNP	OR6V1	NM_001001667.1	human	genbank	58_37c	+1	provisional	missense	c.345	p.D115E	0.991	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCDHA13	56136	genome.wustl.edu	37	5	140263650	140263650	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	5	140263650	140263650	C	T	SNP	PCDHA13	NM_018904.2	human	genbank	58_37c	+1	reviewed	silent	c.1797	p.A599	0.560	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PCMTD2	55251	genome.wustl.edu	37	20	62896720	62896720	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	20	62896720	62896720	G	A	SNP	PCMTD2	NM_018257.2	human	genbank	58_37c	+1	validated	missense	c.520	p.E174K	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
PPM1L	151742	genome.wustl.edu	37	3	160783305	160783305	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	3	160783305	160783305	A	C	SNP	PPM1L	NM_139245.2	human	genbank	58_37c	+1	provisional	missense	c.689	p.D230A	1.000	HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	PatternScan_PP2C,HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	-	no_errors
PROK2	60675	genome.wustl.edu	37	3	71821981	71821981	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	3	71821981	71821981	T	C	SNP	PROK2	NM_001126128.1	human	genbank	58_37c	-1	reviewed	splice_site	c.286-2	e4-2	0.999	-	-	-	no_errors
RICTOR	253260	genome.wustl.edu	37	5	38958580	38958580	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	5	38958580	38958580	G	A	SNP	RICTOR	NM_152756.3	human	genbank	58_37c	-1	validated	silent	c.2385	p.S795	0.731	HMMPfam_RasGEF_N,superfamily_ARM repeat	HMMPfam_RasGEF_N,superfamily_ARM repeat	-	no_errors
RNASE3	6037	genome.wustl.edu	37	14	21359857	21359857	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	14	21359857	21359857	A	G	SNP	RNASE3	NM_002935.2	human	genbank	58_37c	+1	validated	silent	c.12	p.K4	0.000	NULL	HMMPfam_RnaseA,HMMSmart_RNAse_Pc,PatternScan_RNASE_PANCREATIC,superfamily_RNaseA	-	no_errors
SORCS2	57537	genome.wustl.edu	37	4	7714487	7714487	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	4	7714487	7714487	C	T	SNP	SORCS2	ENST00000507866	human	ensembl	58_37c	+1	known	nonsense	c.1795	p.R599*	0.593	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase	HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TMEM155	132332	genome.wustl.edu	37	4	122681612	122681612	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	4	122681612	122681612	C	T	SNP	TMEM155	NM_152399.2	human	genbank	58_37c	-1	validated	missense	c.230	p.R77H	0.000	NULL	NULL	-	no_errors
TMEM71	137835	genome.wustl.edu	37	8	133764098	133764098	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	8	133764098	133764098	C	T	SNP	TMEM71	NM_144649.2	human	genbank	58_37c	-1	validated	missense	c.247	p.D83N	0.923	NULL	NULL	-	no_errors
TTLL3	26140	genome.wustl.edu	37	3	9859333	9859333	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	3	9859333	9859333	G	T	SNP	TTLL3	NM_001025930.2	human	genbank	58_37c	+1	provisional	missense	c.320	p.G107V	1.000	NULL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
XPNPEP2	7512	genome.wustl.edu	37	X	128887190	128887190	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	X	128887190	128887190	A	G	SNP	XPNPEP2	NM_003399.5	human	genbank	58_37c	+1	reviewed	missense	c.1073	p.N358S	1.000	superfamily_Peptidase_M24_cat_core	HMMPfam_Creatinase_N,HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core,PatternScan_PROLINE_PEPTIDASE,superfamily_SSF53092	-	no_errors
ZNF354B	117608	genome.wustl.edu	37	5	178310408	178310408	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0H0-01A-11W-A071-09	TCGA-BH-A0H0-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	69110467-4cf5-4b5d-a2dd-b1c91e786959	49c66d20-3515-4425-a51a-975e2ce61b0c	5	178310408	178310408	A	C	SNP	ZNF354B	NM_058230.2	human	genbank	58_37c	+1	validated	missense	c.955	p.I319L	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
