Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
C11orf40	0	genome.wustl.edu	37	11	4592708	4592709	+	Frame_Shift_Ins	INS	-	-	AG	novel	unknown	TCGA-BH-A1FE-06A-11D-A20S-09	TCGA-BH-A1FE-11B-14D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ab32f53-5f20-4361-ba27-a7c2eb3ac180	e4e4b299-d680-4777-bd54-f0fdc60aae0b	11	4592708	4592709	-	AG	INS	C11orf40	NM_144663.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.599_598	p.C200fs	0.001:0.002	NULL	NULL	-	no_errors
FLT4	0	genome.wustl.edu	37	5	180046493	180046494	+	Splice_Site	DEL	AG	AG	-	novel	unknown	TCGA-BH-A1FE-06A-11D-A20S-09	TCGA-BH-A1FE-11B-14D-A13O-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ab32f53-5f20-4361-ba27-a7c2eb3ac180	e4e4b299-d680-4777-bd54-f0fdc60aae0b	5	180046493	180046494	AG	-	DEL	FLT4	ENST00000376868	human	ensembl	58_37c	-1	known	splice_site_del	c.2247+1_2247+1	e14+1	0.000:0.001	-	-	-	no_errors
IGLV3-22	0	genome.wustl.edu	37	22	23047145	23047146	+	Frame_Shift_Ins	INS	-	-	TGATATA	novel	unknown	TCGA-BH-A1FE-06A-11D-A20S-09	TCGA-BH-A1FE-11B-14D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ab32f53-5f20-4361-ba27-a7c2eb3ac180	e4e4b299-d680-4777-bd54-f0fdc60aae0b	22	23047145	23047146	-	TGATATA	INS	IGLV3-22	ENST00000390307	human	ensembl	58_37c	+1	known	frame_shift_ins	c.183_184	p.P61fs	0.993:0.993	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
LOC642661	0	genome.wustl.edu	37	14	19719682	19719682	+	RNA	SNP	C	C	A	rs61970251	unknown	TCGA-BH-A1FE-06A-11D-A20S-09	TCGA-BH-A1FE-11B-14D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ab32f53-5f20-4361-ba27-a7c2eb3ac180	e4e4b299-d680-4777-bd54-f0fdc60aae0b	14	19719682	19719682	C	A	SNP	LOC642661	XR_016132.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
LOC644496	0	genome.wustl.edu	37	10	52467884	52467886	+	RNA	DEL	TCC	TCC	-	novel	unknown	TCGA-BH-A1FE-06A-11D-A20S-09	TCGA-BH-A1FE-11B-14D-A13O-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ab32f53-5f20-4361-ba27-a7c2eb3ac180	e4e4b299-d680-4777-bd54-f0fdc60aae0b	10	52467884	52467886	TCC	-	DEL	LOC644496	XR_016762.3	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000:1.000:1.000	-	-	-	pseudogene
LOC729057	0	genome.wustl.edu	37	22	16123616	16123616	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A1FE-06A-11D-A20S-09	TCGA-BH-A1FE-11B-14D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ab32f53-5f20-4361-ba27-a7c2eb3ac180	e4e4b299-d680-4777-bd54-f0fdc60aae0b	22	16123616	16123616	C	T	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.992	-	-	-	no_errors
MST1	0	genome.wustl.edu	37	3	49723916	49723916	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-BH-A1FE-06A-11D-A20S-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ab32f53-5f20-4361-ba27-a7c2eb3ac180	e4e4b299-d680-4777-bd54-f0fdc60aae0b	3	49723916	49723916	T	G	SNP	MST1	NM_020998.3	human	genbank	58_37c	-1	reviewed	splice_site	c.848-2	e8-2	0.527	-	-	-	no_errors
TNK2	0	genome.wustl.edu	37	3	195595043	195595043	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FE-06A-11D-A20S-09	TCGA-BH-A1FE-11B-14D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0ab32f53-5f20-4361-ba27-a7c2eb3ac180	e4e4b299-d680-4777-bd54-f0fdc60aae0b	3	195595043	195595043	C	T	SNP	TNK2	NM_001010938.1	human	genbank	58_37c	-1	reviewed	missense	c.2315	p.G772E	0.005	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_GTPase_binding,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
