Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
BCL2L14	0	genome.wustl.edu	37	12	12232555	12232555	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	12	12232555	12232555	C	G	SNP	BCL2L14	NM_138722.1	human	genbank	58_37c	+1	reviewed	missense	c.316	p.Q106E	0.001	NULL	HMMPfam_Bcl-2,superfamily_Bcl-2 inhibitors of programmed cell death	-	no_errors
BRD1	0	genome.wustl.edu	37	22	50217038	50217038	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	22	50217038	50217038	C	T	SNP	BRD1	NM_014577.1	human	genbank	58_37c	-1	reviewed	missense	c.928	p.E310K	1.000	NULL	HMMSmart_PWWP,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_BROMODOMAIN_1,HMMPfam_EPL1,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SSF63748	-	no_errors
C14orf68	0	genome.wustl.edu	37	14	100793545	100793545	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	14	100793545	100793545	C	T	SNP	C14orf68	NM_207117.2	human	genbank	58_37c	+1	validated	silent	c.165	p.G55	0.999	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
CDH1	0	genome.wustl.edu	37	16	68835780	68835781	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	16	68835780	68835781	-	C	INS	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.371_372	p.P127fs	0.005:0.015	superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CFTR	0	genome.wustl.edu	37	7	117180174	117180174	+	Missense_Mutation	SNP	G	G	A	rs143486492	byFrequency	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	7	117180174	117180174	G	A	SNP	CFTR	NM_000492.3	human	genbank	58_37c	+1	reviewed	missense	c.890	p.R297Q	1.000	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CH25H	0	genome.wustl.edu	37	10	90966611	90966611	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	10	90966611	90966611	G	T	SNP	CH25H	NM_003956.3	human	genbank	58_37c	-1	reviewed	missense	c.439	p.H147N	1.000	HMMPfam_FA_hydroxylase	HMMPfam_FA_hydroxylase	-	no_errors
CHML	0	genome.wustl.edu	37	1	241798530	241798530	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	1	241798530	241798530	T	G	SNP	CHML	NM_001821.3	human	genbank	58_37c	-1	reviewed	missense	c.539	p.K180T	0.075	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
CREB3L4	0	genome.wustl.edu	37	1	153941846	153941846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	1	153941846	153941846	G	A	SNP	CREB3L4	NM_130898.2	human	genbank	58_37c	+1	provisional	missense	c.458	p.C153Y	0.957	NULL	HMMSmart_BRLZ,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1	-	no_errors
CTSA	0	genome.wustl.edu	37	20	44520238	44520240	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	20	44520238	44520240	CTG	-	DEL	CTSA	NM_000308.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.85_87	p.L32in_frame_del	0.155:0.311:0.361	NULL	HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER,PatternScan_CARBOXYPEPT_SER_HIS,superfamily_alpha/beta-Hydrolases	-	no_errors
DCAF12L1	0	genome.wustl.edu	37	X	125686114	125686114	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	X	125686114	125686114	A	C	SNP	DCAF12L1	NM_178470.4	human	genbank	58_37c	-1	reviewed	missense	c.478	p.S160A	1.000	superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
DHDPSL	0	genome.wustl.edu	37	10	99359502	99359502	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	10	99359502	99359502	G	A	SNP	DHDPSL	NM_138413.3	human	genbank	58_37c	+1	validated	silent	c.534	p.L178	1.000	HMMPfam_DHDPS,PatternScan_DHDPS_2,superfamily_Aldolase	HMMPfam_DHDPS,PatternScan_DHDPS_2,superfamily_Aldolase	-	no_errors
DIP2A	0	genome.wustl.edu	37	21	47978254	47978254	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	21	47978254	47978254	G	A	SNP	DIP2A	NM_015151.3	human	genbank	58_37c	+1	reviewed	missense	c.3917	p.R1306H	0.996	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like	-	no_errors
DOC2B	0	genome.wustl.edu	37	17	6037	6037	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	17	6037	6037	G	A	SNP	DOC2B	ENST00000343572	human	ensembl	58_37c	-1	known	silent	c.897	p.N299	0.942	HMMPfam_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
ENSG00000198888	0	genome.wustl.edu	37	MT	3460	3460	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	MT	3460	3460	G	A	SNP	ENSG00000198888	ENST00000361390	human	ensembl	58_37c	+1	known	missense	c.154	p.A52T	NULL	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_stop_codon:mismatch_between_exon_seq_and_reference
FAM157C	0	genome.wustl.edu	37	16	90172888	90172888	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	16	90172888	90172888	A	G	SNP	FAM157C	XM_001714162.2	human	genbank	58_37c	+1	model	silent	c.675	p.E225	0.023	NULL	NULL	-	no_errors
GATA3	0	genome.wustl.edu	37	10	8115737	8115749	+	Frame_Shift_Del	DEL	CCAGACCAGAAAC	CCAGACCAGAAAC	-	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	CCAGACCAGAAAC	CCAGACCAGAAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	10	8115737	8115749	CCAGACCAGAAAC	-	DEL	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1086_1098	p.Q363fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GIT1	0	genome.wustl.edu	37	17	27903567	27903567	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	17	27903567	27903567	G	A	SNP	GIT1	NM_001085454.1	human	genbank	58_37c	-1	validated	silent	c.1380	p.S460	0.995	NULL	HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_GIT_SHD,HMMSmart_GIT	-	no_errors
IGSF3	0	genome.wustl.edu	37	1	117122285	117122286	+	In_Frame_Ins	INS	-	-	TCC	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	1	117122285	117122286	-	TCC	INS	IGSF3	NM_001542.2	human	genbank	58_37c	-1	validated	in_frame_ins	c.3123_3122	p.1041in_frame_insE	0.040:0.030	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
LOC100286979	0	genome.wustl.edu	37	2	87355912	87355912	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	2	87355912	87355912	C	T	SNP	LOC100286979	XR_078255.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
LOC100289581	0	genome.wustl.edu	37	10	135491060	135491060	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	10	135491060	135491060	T	G	SNP	LOC100289581	XM_002343041.1	human	genbank	58_37c	+1	model	missense	c.671	p.L224R	0.911	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	pseudogene
POMT2	0	genome.wustl.edu	37	14	77767528	77767528	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	14	77767528	77767528	C	T	SNP	POMT2	NM_013382.5	human	genbank	58_37c	-1	reviewed	missense	c.721	p.G241R	1.000	HMMPfam_PMT	PatternScan_SERPIN,HMMPfam_PMT,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472	-	no_errors
ROS1	0	genome.wustl.edu	37	6	117642471	117642471	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	6	117642471	117642471	G	A	SNP	ROS1	NM_002944.2	human	genbank	58_37c	-1	reviewed	nonsense	c.5728	p.R1910*	0.587	NULL	HMMSmart_LY,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF63825	-	no_errors
RYR2	0	genome.wustl.edu	37	1	237813233	237813233	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	1	237813233	237813233	C	T	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	silent	c.7569	p.A2523	0.816	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SCGB2A1	0	genome.wustl.edu	37	11	61977888	61977888	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	11	61977888	61977888	C	G	SNP	SCGB2A1	NM_002407.2	human	genbank	58_37c	+1	validated	missense	c.59	p.S20C	0.874	HMMPfam_Uteroglobin,superfamily_Secretoglobin	HMMPfam_Uteroglobin,superfamily_Secretoglobin	-	no_errors
TBX3	0	genome.wustl.edu	37	12	115120616	115120616	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	12	115120616	115120616	C	T	SNP	TBX3	NM_016569.3	human	genbank	58_37c	-1	reviewed	splice_site	c.389+1	e1+1	1.000	-	-	-	no_errors
TOP3B	0	genome.wustl.edu	37	22	22318370	22318370	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	22	22318370	22318370	G	A	SNP	TOP3B	NM_003935.3	human	genbank	58_37c	-1	reviewed	missense	c.1129	p.R377C	1.000	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00437,HMMPfam_Topoisom_bac	PatternScan_TOPOISOMERASE_I_PROK,superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00436,HMMSmart_SM00437,HMMSmart_SM00493,HMMPfam_Toprim,HMMPfam_Topoisom_bac	-	no_errors
TPM2	0	genome.wustl.edu	37	9	35685029	35685029	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	9	35685029	35685029	C	A	SNP	TPM2	ENST00000378309	human	ensembl	58_37c	-1	known	missense	c.671	p.W224L	0.000	HMMPfam_Tropomyosin	HMMPfam_Tropomyosin	-	no_errors
TTLL4	0	genome.wustl.edu	37	2	219609846	219609846	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	2	219609846	219609846	T	C	SNP	TTLL4	NM_014640.4	human	genbank	58_37c	+1	validated	missense	c.1676	p.I559T	0.070	NULL	HMMPfam_TTL,superfamily_SSF56059	-	no_errors
USH2A	0	genome.wustl.edu	37	1	216172264	216172264	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A28Q-01A-11D-A16D-09	TCGA-BH-A28Q-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0698379c-8f4e-460d-b7da-d3f6179dafd7	99e69ff4-d3d5-42b6-b7c2-292e502b9fcf	1	216172264	216172264	C	T	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	missense	c.6622	p.V2208I	0.392	HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
